1
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Bakels S, Daly S, Doğan B, Baerenfaenger M, Commandeur J, Rijs AM. Probing High-Order Transient Oligomers Using Ion Mobility Mass Spectrometry Coupled with Infrared Action Spectroscopy. Anal Chem 2024; 96. [PMID: 39150274 PMCID: PMC11359389 DOI: 10.1021/acs.analchem.4c02749] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2024] [Revised: 07/23/2024] [Accepted: 08/09/2024] [Indexed: 08/17/2024]
Abstract
Understanding and controlling peptide aggregation are critical due to its neurotoxic implications. However, structural information about the key intermediates, the oligomers, is obscured by a cascade of coinciding events occurring at various time and energy scales, which results in complex and heterogeneous mixtures of oligomers. To address this challenge, we have developed the Photo-Synapt, a novel, multidimensional spectrometer that integrates ion mobility mass spectrometry with infrared (IR) action spectroscopy within a single experiment. By combining three different orthogonal analytical dimensions, we can select and isolate individual oligomers by mass, charge, size, and shape and provide a unique molecular fingerprint for each oligomer. The broad application of this technology is demonstrated by its application to oligosaccharide analysis from glycoproteins, which are challenging to analyze due to the minute differences between isomers. By integration of IR action spectroscopy with ion mobility mass spectrometry, this approach adds an analytical dimension that effectively addresses this limitation, offering a unique molecular fingerprint for each isomer.
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Affiliation(s)
- Sjors Bakels
- Division
of Bioanalytical Chemistry, Department of Chemistry and Pharmaceutical
Sciences, Amsterdam Institute of Molecular and Life Sciences, Vrije Universiteit Amsterdam, De Boelelaan 1105, 1081 HV Amsterdam, The Netherlands
- Centre
for Analytical Sciences Amsterdam, 1098 XH Amsterdam, The Netherlands
| | - Steven Daly
- MS
Vision, Spectrometry Vision B.V., Televisieweg 40, Almere 1322 AM, The Netherlands
| | - Berk Doğan
- MS
Vision, Spectrometry Vision B.V., Televisieweg 40, Almere 1322 AM, The Netherlands
| | - Melissa Baerenfaenger
- Division
of Bioanalytical Chemistry, Department of Chemistry and Pharmaceutical
Sciences, Amsterdam Institute of Molecular and Life Sciences, Vrije Universiteit Amsterdam, De Boelelaan 1105, 1081 HV Amsterdam, The Netherlands
- Centre
for Analytical Sciences Amsterdam, 1098 XH Amsterdam, The Netherlands
| | - Jan Commandeur
- MS
Vision, Spectrometry Vision B.V., Televisieweg 40, Almere 1322 AM, The Netherlands
| | - Anouk M. Rijs
- Division
of Bioanalytical Chemistry, Department of Chemistry and Pharmaceutical
Sciences, Amsterdam Institute of Molecular and Life Sciences, Vrije Universiteit Amsterdam, De Boelelaan 1105, 1081 HV Amsterdam, The Netherlands
- Centre
for Analytical Sciences Amsterdam, 1098 XH Amsterdam, The Netherlands
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2
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Ashworth EK, Ashworth SH, Bull JN. Spectroscopy and dynamics of isolated anions: Versatile instrumentation for photodetachment and photoelectron spectroscopy. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2024; 95:075103. [PMID: 38984887 DOI: 10.1063/5.0207759] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/11/2024] [Accepted: 06/19/2024] [Indexed: 07/11/2024]
Abstract
Molecular anions are appealing targets for study because, compared with their neutral and cationic counterparts, they can be probed with conventional laboratory lasers without the need for multiphoton ionization schemes, and they provide spectroscopic details on the corresponding neutral molecules. Here, we describe a section of a modular instrument designed to perform high-throughput photoelectron and photodetachment spectroscopy of gas-phase anions, with future provision for time-resolved and isomer-selective spectroscopy. The instrument framework allows for the incorporation and adaptation of several ion sources, as demonstrated here with plasma (electric) discharge sources providing variable hard to soft ion generation conditions. The generated anions are separated according to their mass-to-charge ratio through time-of-flight mass spectrometry (m/zΔm/z = 500-600) and are focused into a set of perpendicular velocity-map imaging electrodes (ΔEE≈4%), where mass-selected anions are probed using laser light and the ejected electrons are velocity-map imaged. Instrument performance is demonstrated through the acquisition of photodetachment and photoelectron spectra for CH2CN-, showing sharp resonances in the vicinity of the detachment threshold assigned to rovibrational states of a dipole-bound anion and broader lifetime-limited spectral features at photon energies well above the threshold assigned to prompt autodetachment from a temporary anion resonance. Similar measurements could be performed on any molecular anions generated in the sources.
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Affiliation(s)
- Eleanor K Ashworth
- School of Chemistry, University of East Anglia, Norwich NR4 7TJ, United Kingdom
| | - Stephen H Ashworth
- School of Chemistry, University of East Anglia, Norwich NR4 7TJ, United Kingdom
| | - James N Bull
- School of Chemistry, University of East Anglia, Norwich NR4 7TJ, United Kingdom
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3
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Zima V, Vlk M, Wan J, Cvačka J, Tureček F. Tracking Isomerizations of High-Energy Adenine Cation Radicals by UV-Vis Action Spectroscopy and Cyclic Ion Mobility Mass Spectrometry. J Phys Chem A 2023. [PMID: 37433135 DOI: 10.1021/acs.jpca.3c03179] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/13/2023]
Abstract
We report experimental and computational studies of protonated adenine C-8 σ-radicals that are presumed yet elusive reactive intermediates of oxidative damage to nucleic acids. The radicals were generated in the gas phase by the collision-induced dissociation of C-8-Br and C-8-I bonds in protonated 8-bromo- and 8-iodoadenine as well as by 8-bromo- and 8-iodo-9-methyladenine. Protonation by electrospray of 8-bromo- and 8-iodoadenine was shown by cyclic-ion mobility mass spectrometry (c-IMS) to form the N-1-H, N-9-H and N-3-H, N-7-H protomers in 85:15 and 81:19 ratios, respectively, in accordance with the equilibrium populations of these protomers in water-solvated ions that were calculated by density functional theory (DFT). Protonation of 8-halogenated 9-methyladenines yielded single N-1-H protomers, which was consistent with their thermodynamic stability. The radicals produced from the 8-bromo and 8-iodo adenine cations were characterized by UV-vis photodissociation action spectroscopy (UVPD) and c-IMS. UVPD revealed the formation of C-8 σ-radicals along with N-3-H, N-7-H-adenine π-radicals that arose as secondary products by hydrogen atom migrations. The isomers were identified by matching their action spectra against the calculated vibronic absorption spectra. Deuterium isotope effects were found to slow the isomerization and increase the population of C-8 σ-radicals. The adenine cation radicals were separated by c-IMS and identified by their collision cross sections, which were measured relative to the canonical N-9-H adenine cation radical that was cogenerated in situ as an internal standard. Ab initio CCSD(T)/CBS calculations of isomer energies showed that the adenine C-8 σ-radicals were local energy minima with relative energies at 76-79 kJ mol-1 above that of the canonical adenine cation radical. Rice-Ramsperger-Kassel-Marcus calculations of unimolecular rate constants for hydrogen and deuterium migrations resulting in exergonic isomerizations showed kinetic shifts of 10-17 kJ mol-1, stabilizing the C-8 σ-radicals. C-8 σ-radicals derived from N-1-protonated 9-methyladenine were also thermodynamically unstable and readily isomerized upon formation.
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Affiliation(s)
- Václav Zima
- Department of Chemistry, University of Washington, Seattle, Washington 98195-1700, United States
| | - Mikuláš Vlk
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, 16610 Prague 6, Czech Republic
- Department of Analytical Chemistry, Faculty of Science, Charles University, 12800 Prague, Czech Republic
| | - Jiahao Wan
- Department of Chemistry, University of Washington, Seattle, Washington 98195-1700, United States
| | - Josef Cvačka
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, 16610 Prague 6, Czech Republic
- Department of Analytical Chemistry, Faculty of Science, Charles University, 12800 Prague, Czech Republic
| | - František Tureček
- Department of Chemistry, University of Washington, Seattle, Washington 98195-1700, United States
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4
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Marlton SJP, Buntine JT, Watkins P, Liu C, Jacovella U, Carrascosa E, Bull JN, Bieske EJ. Probing Colossal Carbon Rings. J Phys Chem A 2023; 127:1168-1178. [PMID: 36703560 DOI: 10.1021/acs.jpca.2c07068] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
Carbon aggregates containing between 10 and 30 atoms preferentially arrange themselves as planar rings. To learn more about this exotic allotrope of carbon, electronic spectra are measured for even cyclo[n]carbon radical cations (C14+-C36+) using two-color photodissociation action spectroscopy. To eliminate spectral contributions from other isomers, the target cyclo[n]carbon radical cations are isomer-selected using a drift tube ion mobility spectrometer prior to spectroscopic interrogation. The electronic spectra exhibit sharp transitions spanning the visible and near-infrared spectral regions with the main absorption band shifting progressively to longer wavelength by ≈100 nm for every additional two carbon atoms. This behavior is rationalized with a Hückel theory model describing the energies of the in-plane and out-of-plane π orbitals. Photoexcitation of smaller carbon rings leads preferentially to neutral C3 and C5 loss, whereas rings larger than C24+ tend to also decompose into two smaller rings, which, when possible, have aromatic stability. Generally, the observed charged photofragments correspond to low energy fragment pairs, as predicted by density functional theory calculations (CAM-B3LYP-D3(BJ)/cc-pVDZ). Using action spectroscopy it is confirmed that C14+ and C18+ photofragments from C28+ rings have cyclic structures.
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Affiliation(s)
- Samuel J P Marlton
- School of Chemistry, The University of Melbourne, Victoria, Australia3010
| | - Jack T Buntine
- School of Chemistry, The University of Melbourne, Victoria, Australia3010
| | - Patrick Watkins
- School of Chemistry, The University of Melbourne, Victoria, Australia3010
| | - Chang Liu
- School of Chemistry, The University of Melbourne, Victoria, Australia3010
| | - Ugo Jacovella
- Université Paris-Saclay, CNRS, Institut des Sciences Moléculaires d'Orsay, 91405Orsay, France
| | - Eduardo Carrascosa
- Bruker Daltonics GmbH & Co. KG, Fahrenheitstrasse 4, 28359Bremen, Germany
| | - James N Bull
- School of Chemistry, Norwich Research Park, University of East Anglia, NorwichNR4 7TJ, United Kingdom
| | - Evan J Bieske
- School of Chemistry, The University of Melbourne, Victoria, Australia3010
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5
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Fu D, Habtegabir SG, Wang H, Feng S, Han Y. Understanding of protomers/deprotomers by combining mass spectrometry and computation. Anal Bioanal Chem 2023:10.1007/s00216-023-04574-1. [PMID: 36737499 DOI: 10.1007/s00216-023-04574-1] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2022] [Revised: 01/19/2023] [Accepted: 01/27/2023] [Indexed: 02/05/2023]
Abstract
Multifunctional compounds may form different prototropic isomers under different conditions, which are known as protomers/deprotomers. In biological systems, these protomer/deprotomer isomers affect the interaction modes and conformational landscape between compounds and enzymes and thus present different biological activities. Study on protomers/deprotomers is essentially the study on the acidity/basicity of each intramolecular functional group and its effect on molecular structure. In recent years, the combination of mass spectrometry (MS) and computational chemistry has been proven to be a powerful and effective means to study prototropic isomers. MS-based technologies are developed to discriminate and characterize protomers/deprotomers to provide structural information and monitor transformations, showing great superiority than other experimental methods. Computational chemistry is used to predict the thermodynamic stability of protomers/deprotomers, provide the simulated MS/MS spectra, infrared spectra, and calculate collision cross-section values. By comparing the theoretical data with the corresponding experimental results, the researchers can not only determine the protomer/deprotomer structure, but also investigate the structure-activity relationship in a given system. This review covers various MS methods and theoretical calculations and their devotion to isomer discrimination, structure identification, conformational transformation, and phase transition investigation of protomers/deprotomers.
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Affiliation(s)
- Dali Fu
- State Key Laboratory of Heavy Oil Processing, College of Chemical Engineering and Environment, China University of Petroleum-Beijing, Beijing, 102249, People's Republic of China
| | - Sara Girmay Habtegabir
- State Key Laboratory of Heavy Oil Processing, College of Chemical Engineering and Environment, China University of Petroleum-Beijing, Beijing, 102249, People's Republic of China
| | - Haodong Wang
- State Key Laboratory of Heavy Oil Processing, College of Chemical Engineering and Environment, China University of Petroleum-Beijing, Beijing, 102249, People's Republic of China
| | - Shijie Feng
- State Key Laboratory of Heavy Oil Processing, College of Chemical Engineering and Environment, China University of Petroleum-Beijing, Beijing, 102249, People's Republic of China
| | - Yehua Han
- State Key Laboratory of Heavy Oil Processing, College of Chemical Engineering and Environment, China University of Petroleum-Beijing, Beijing, 102249, People's Republic of China.
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6
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Ashworth E, Coughlan NJA, Hopkins WS, Bieske EJ, Bull JN. Excited-State Barrier Controls E → Z Photoisomerization in p-Hydroxycinnamate Biochromophores. J Phys Chem Lett 2022; 13:9028-9034. [PMID: 36149746 PMCID: PMC9549896 DOI: 10.1021/acs.jpclett.2c02613] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2022] [Accepted: 09/21/2022] [Indexed: 06/16/2023]
Abstract
Molecules based on the deprotonated p-hydroxycinnamate moiety are widespread in nature, including serving as UV filters in the leaves of plants and as the biochromophore in photoactive yellow protein. The photophysical behavior of these chromophores is centered around a rapid E → Z photoisomerization by passage through a conical intersection seam. Here, we use photoisomerization and photodissociation action spectroscopies with deprotonated 4-hydroxybenzal acetone (pCK-) to characterize a wavelength-dependent bifurcation between electron autodetachment (spontaneous ejection of an electron from the S1 state because it is situated in the detachment continuum) and E → Z photoisomerization. While autodetachment occurs across the entire S1(ππ*) band (370-480 nm), E → Z photoisomerization occurs only over a blue portion of the band (370-430 nm). No E → Z photoisomerization is observed when the ketone functional group in pCK- is replaced with an ester or carboxylic acid. The wavelength-dependent bifurcation is consistent with potential energy surface calculations showing that a barrier separates the Franck-Condon region from the E → Z isomerizing conical intersection. The barrier height, which is substantially higher in the gas phase than in solution, depends on the functional group and governs whether E → Z photoisomerization occurs more rapidly than autodetachment.
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Affiliation(s)
- Eleanor
K. Ashworth
- School
of Chemistry, University of East Anglia, Norwich NR4 7TJ, United Kingdom
| | - Neville J. A. Coughlan
- Department
of Chemistry, University of Waterloo, Waterloo, Ontario N2L 3G1, Canada
- WaterMine
Innovation, Inc., Waterloo, Ontario N0B 2T0, Canada
| | - W. Scott Hopkins
- Department
of Chemistry, University of Waterloo, Waterloo, Ontario N2L 3G1, Canada
- WaterMine
Innovation, Inc., Waterloo, Ontario N0B 2T0, Canada
| | - Evan J. Bieske
- School
of Chemistry, University of Melbourne, Parkville, VIC 3010, Australia
| | - James N. Bull
- School
of Chemistry, University of East Anglia, Norwich NR4 7TJ, United Kingdom
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7
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Buntine JT, Carrascosa E, Bull JN, Muller G, Jacovella U, Glasson CR, Vamvounis G, Bieske EJ. Photo-induced 6π-electrocyclisation and cycloreversion of isolated dithienylethene anions. Phys Chem Chem Phys 2022; 24:16628-16636. [PMID: 35766319 DOI: 10.1039/d2cp01240e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The diarylethene chromophore is commonly used in light-triggered molecular switches. The chromophore undergoes reversible 6π-electrocyclisation (ring closing) and cycloreversion (ring opening) reactions upon exposure to UV and visible light, respectively, providing bidirectional photoswitching. Here, we investigate the gas-phase photoisomerisation of meta- (m) and para- (p) substituted dithienylethene carboxylate anions (DTE-) using tandem ion mobility mass spectrometry coupled with laser excitation. The ring-closed forms of p-DTE- and m-DTE- are found to undergo cycloreversion in the gas phase with maximum responses associated with bands in the visible (λmax ≈ 600 nm) and the ultraviolet (λmax ≈ 360 nm). The ring-open p-DTE- isomer undergoes 6π-electrocyclisation in the ultraviolet region at wavelengths shorter than 350 nm, whereas no evidence is found for the corresponding electrocyclisation of ring-open m-DTE-, a situation attributed to the fact that the antiparallel geometry required for electrocyclisation of m-DTE- is energetically disfavoured. This highlights the influence of the carboxylate substitution position on the photochemical properties of DTE molecules. We find no evidence for the formation in the gas phase of the undesirable cyclic byproduct, which causes fatigue of DTE photoswitches in solution.
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Affiliation(s)
- Jack T Buntine
- School of Chemistry, The University of Melbourne, Parkville, Victoria 3010, Australia.
| | - Eduardo Carrascosa
- Bruker Daltonics GmbH & Co. KG, Fahrenheitstrasse 4, 28359 Bremen, Germany
| | - James N Bull
- School of Chemistry, Norwich Research Park, University of East Anglia, Norwich NR4 7TJ, UK
| | - Giel Muller
- School of Chemistry, The University of Melbourne, Parkville, Victoria 3010, Australia.
| | - Ugo Jacovella
- Université Paris-Saclay, CNRS, Institut des Sciences Moléculaires d'Orsay, 91405 Orsay, France
| | - Christopher R Glasson
- Environmental Research Institute, School of Science, University of Waikato, Tauranga, 3110, New Zealand
| | - George Vamvounis
- College of Science and Engineering, James Cook University, Townsville, Queensland 4811, Australia
| | - Evan J Bieske
- School of Chemistry, The University of Melbourne, Parkville, Victoria 3010, Australia.
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8
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Buntine JT, Carrascosa E, Bull JN, Jacovella U, Cotter MI, Watkins P, Liu C, Scholz MS, Adamson BD, Marlton SJP, Bieske EJ. An ion mobility mass spectrometer coupled with a cryogenic ion trap for recording electronic spectra of charged, isomer-selected clusters. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2022; 93:043201. [PMID: 35489918 DOI: 10.1063/5.0085680] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/18/2022] [Accepted: 02/28/2022] [Indexed: 06/14/2023]
Abstract
Infrared and electronic spectra are indispensable for understanding the structural and energetic properties of charged molecules and clusters in the gas phase. However, the presence of isomers can potentially complicate the interpretation of spectra, even if the target molecules or clusters are mass-selected beforehand. Here, we describe an instrument for spectroscopically characterizing charged molecular clusters that have been selected according to both their isomeric form and their mass-to-charge ratio. Cluster ions generated by laser ablation of a solid sample are selected according to their collision cross sections with helium buffer gas using a drift tube ion mobility spectrometer and their mass-to-charge ratio using a quadrupole mass filter. The mobility- and mass-selected target ions are introduced into a cryogenically cooled, three-dimensional quadrupole ion trap where they are thermalized through inelastic collisions with an inert buffer gas (He or He/N2 mixture). Spectra of the molecular ions are obtained by tagging them with inert atoms or molecules (Ne and N2), which are dislodged following resonant excitation of an electronic transition, or by photodissociating the cluster itself following absorption of one or more photons. An electronic spectrum is generated by monitoring the charged photofragment yield as a function of wavelength. The capacity of the instrument is illustrated with the resonance-enhanced photodissociation action spectra of carbon clusters (Cn +) and polyacetylene cations (HC2nH+) that have been selected according to the mass-to-charge ratio and collision cross section with He buffer gas and of mass-selected Au2 + and Au2Ag+ clusters.
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Affiliation(s)
- Jack T Buntine
- School of Chemistry, The University of Melbourne, Victoria 3010, Australia
| | - Eduardo Carrascosa
- School of Chemistry, The University of Melbourne, Victoria 3010, Australia
| | - James N Bull
- School of Chemistry, The University of Melbourne, Victoria 3010, Australia
| | - Ugo Jacovella
- School of Chemistry, The University of Melbourne, Victoria 3010, Australia
| | - Mariah I Cotter
- School of Chemistry, The University of Melbourne, Victoria 3010, Australia
| | - Patrick Watkins
- School of Chemistry, The University of Melbourne, Victoria 3010, Australia
| | - Chang Liu
- School of Chemistry, The University of Melbourne, Victoria 3010, Australia
| | - Michael S Scholz
- School of Chemistry, The University of Melbourne, Victoria 3010, Australia
| | - Brian D Adamson
- School of Chemistry, The University of Melbourne, Victoria 3010, Australia
| | - Samuel J P Marlton
- School of Chemistry, The University of Melbourne, Victoria 3010, Australia
| | - Evan J Bieske
- School of Chemistry, The University of Melbourne, Victoria 3010, Australia
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9
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Marlton SJP, Trevitt A. Laser Photodissocation, Action Spectroscopy and Mass Spectrometry Unite to Detect and Separate Isomers. Chem Commun (Camb) 2022; 58:9451-9467. [DOI: 10.1039/d2cc02101c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The separation and detection of isomers remains a challenge for many areas of mass spectrometry. This article highlights laser photodissociation and ion mobility strategies that have been deployed to tackle...
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10
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Carrascosa E, Bull JN, Martínez-Núñez E, Scholz MS, Buntine JT, Bieske EJ. Photoisomerization of Linear and Stacked Isomers of a Charged Styryl Dye: A Tandem Ion Mobility Study. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2021; 32:2842-2851. [PMID: 34787413 PMCID: PMC8640989 DOI: 10.1021/jasms.1c00264] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/30/2021] [Revised: 10/21/2021] [Accepted: 11/01/2021] [Indexed: 06/13/2023]
Abstract
The photoisomerization behavior of styryl 9M, a common dye used in material sciences, is investigated using tandem ion mobility spectrometry (IMS) coupled with laser spectroscopy. Styryl 9M has two alkene linkages, potentially allowing for four geometric isomers. IMS measurements demonstrate that at least three geometric isomers are generated using electrospray ionization with the most abundant forms assigned to a combination of EE (major) and ZE (minor) geometric isomers, which are difficult to distinguish using IMS as they have similar collision cross sections. Two additional but minor isomers are generated by collisional excitation of the electrosprayed styryl 9M ions and are assigned to the EZ and ZZ geometric isomers, with the latter predicted to have a π-stacked configuration. The isomer assignments are supported through calculations of equilibrium structures, collision cross sections, and statistical isomerization rates. Photoexcitation of selected isomers using an IMS-photo-IMS strategy shows that each geometric isomer photoisomerizes following absorption of near-infrared and visible light, with the EE isomer possessing a S1 ← S0 electronic transition with a band maximum near 680 nm and shorter wavelength S2 ← S0 electronic transition with a band maximum near 430 nm. The study demonstrates the utility of the IMS-photo-IMS strategy for providing fundamental gas-phase photochemical information on molecular systems with multiple isomerizable bonds.
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Affiliation(s)
- Eduardo Carrascosa
- School
of Chemistry, The University of Melbourne, Parkville, Victoria 3010, Australia
| | - James N. Bull
- School
of Chemistry, The University of Melbourne, Parkville, Victoria 3010, Australia
- School
of Chemistry, Norwich Research Park, University
of East Anglia, Norwich NR4 7TJ, United Kingdom
| | - Emilio Martínez-Núñez
- Departamento
de Química Física, Universidade
de Santiago de Compostela, 15782 Santiago de Compostela, Spain
| | - Michael S. Scholz
- School
of Chemistry, The University of Melbourne, Parkville, Victoria 3010, Australia
| | - Jack T. Buntine
- School
of Chemistry, The University of Melbourne, Parkville, Victoria 3010, Australia
| | - Evan J. Bieske
- School
of Chemistry, The University of Melbourne, Parkville, Victoria 3010, Australia
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11
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Liu FC, Ridgeway ME, Winfred JSRV, Polfer NC, Lee J, Theisen A, Wootton CA, Park MA, Bleiholder C. Tandem-trapped ion mobility spectrometry/mass spectrometry coupled with ultraviolet photodissociation. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2021; 35:e9192. [PMID: 34498312 PMCID: PMC9195479 DOI: 10.1002/rcm.9192] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2021] [Revised: 09/02/2021] [Accepted: 09/03/2021] [Indexed: 05/05/2023]
Abstract
RATIONALE Tandem-ion mobility spectrometry/mass spectrometry methods have recently gained traction for the structural characterization of proteins and protein complexes. However, ion activation techniques currently coupled with tandem-ion mobility spectrometry/mass spectrometry methods are limited in their ability to characterize structures of proteins and protein complexes. METHODS Here, we describe the coupling of the separation capabilities of tandem-trapped ion mobility spectrometry/mass spectrometry (tTIMS/MS) with the dissociation capabilities of ultraviolet photodissociation (UVPD) for protein structure analysis. RESULTS We establish the feasibility of dissociating intact proteins by UV irradiation at 213 nm between the two TIMS devices in tTIMS/MS and at pressure conditions compatible with ion mobility spectrometry (2-3 mbar). We validate that the fragments produced by UVPD under these conditions result from a radical-based mechanism in accordance with prior literature on UVPD. The data suggest stabilization of fragment ions produced from UVPD by collisional cooling due to the elevated pressures used here ("UVnoD2"), which otherwise do not survive to detection. The data account for a sequence coverage for the protein ubiquitin comparable to recent reports, demonstrating the analytical utility of our instrument in mobility-separating fragment ions produced from UVPD. CONCLUSIONS The data demonstrate that UVPD carried out at elevated pressures of 2-3 mbar yields extensive fragment ions rich in information about the protein and that their exhaustive analysis requires IMS separation post-UVPD. Therefore, because UVPD and tTIMS/MS each have been shown to be valuable techniques on their own merit in proteomics, our contribution here underscores the potential of combining tTIMS/MS with UVPD for structural proteomics.
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Affiliation(s)
- Fanny C. Liu
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, FL 32306-4389, USA
| | - Mark E. Ridgeway
- Bruker Daltonics, Inc., 40 Manning Rd., Billerica, MA 01821, USA
| | | | - Nicolas C. Polfer
- Athénée de Luxembourg, 24 boulevard Pierre Dupont, L-1430 Luxembourg, Grand-Duchy of Luxembourg
| | - Jusung Lee
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, FL 32306-4389, USA
| | | | | | - Melvin A. Park
- Bruker Daltonics, Inc., 40 Manning Rd., Billerica, MA 01821, USA
- Correspondence to: ,
| | - Christian Bleiholder
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, FL 32306-4389, USA
- Institute of Molecular Biophysics, Florida State University, Tallahassee, FL 32306-4389, USA
- Correspondence to: ,
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12
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Niedner‐Schatteburg G, Kappes MM. Advancing Inorganic Coordination Chemistry by Spectroscopy of Isolated Molecules: Methods and Applications. Chemistry 2021; 27:15027-15042. [PMID: 34636096 PMCID: PMC8596414 DOI: 10.1002/chem.202102815] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2021] [Indexed: 12/14/2022]
Abstract
A unique feature of the work carried out in the Collaborative Research Center 3MET continues to be its emphasis on innovative, advanced experimental methods which hyphenate mass-selection with further analytical tools such as laser spectroscopy for the study of isolated molecular ions. This allows to probe the intrinsic properties of the species of interest free of perturbing solvent or matrix effects. This review explains these methods and uses examples from past and ongoing 3MET studies of specific classes of multicenter metal complexes to illustrate how coordination chemistry can be advanced by applying them. As a corollary, we will show how the challenges involved in providing well-defined, for example monoisomeric, samples of the molecular ions have helped to further improve the methods themselves thus also making them applicable to many other areas of chemistry.
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Affiliation(s)
| | - Manfred M. Kappes
- Institute of Physical Chemistry and Institute of NanotechnologyKarlsruhe Institute of Technology (KIT)76128KarlsruheGermany
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13
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Le Fèvre A, Dugourd P, Chirot F. Exploring Conformational Landscapes Using Trap and Release Tandem Ion Mobility Spectrometry. Anal Chem 2021; 93:4183-4190. [PMID: 33625848 DOI: 10.1021/acs.analchem.0c04520] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The dynamics and thermodynamics of structural changes in isolated glu-fibrinopeptide B (GluFib) were investigated by tandem ion mobility spectrometry (IMS). Doubly protonated GluFib2+ ions were first selected by IMS and then stored for a controlled duration in a thermalized ion trap. Temperature-induced conformational changes were finally monitored by IMS as a function of trapping time. Based on this procedure, isomerization rates and equilibrium populations of the different conformers were determined as a function of temperature. We demonstrate that the measured thermodynamic quantities can be directly compared to simulated observables from ensemble molecular modeling based on appropriate order parameters. We obtained good qualitative agreement with replica-exchange molecular dynamics simulations based on the AMOEBA force field and processed using the weighted histogram analysis method. This suggests that the balance between Coulomb repulsion and optimal charge solvation is the main source of the observed conformational bistability. Our results emphasize the differences between the kinetically driven quasi-equilibrium distributions obtained after collisional activation and the thermodynamically driven distributions from the present equilibrium experiments due to entropic effects. As a consequence, our measurements not only allow straightforward determination of Arrhenius activation energies but also yield the relative enthalpy and entropy changes associated to a structural transition.
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Affiliation(s)
- Aurélien Le Fèvre
- Université Lyon, Université Claude Bernard Lyon 1, CNRS, UMR5280 Institut des Sciences Analytiques, 5 rue de la Doua, Villeurbanne F-69100, France
| | - Philippe Dugourd
- Université Lyon, Université Claude Bernard Lyon 1, CNRS, UMR5306 Institut Lumière Matière, 5 rue de la Doua, Villeurbanne F-69100, France
| | - Fabien Chirot
- Université Lyon, Université Claude Bernard Lyon 1, CNRS, UMR5280 Institut des Sciences Analytiques, 5 rue de la Doua, Villeurbanne F-69100, France
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14
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Stockett MH, Kjær C, Daly S, Bieske EJ, Verlet JRR, Nielsen SB, Bull JN. Photophysics of Isolated Rose Bengal Anions. J Phys Chem A 2020; 124:8429-8438. [PMID: 32966075 DOI: 10.1021/acs.jpca.0c07123] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Dye molecules based on the xanthene moiety are widely used as fluorescent probes in bioimaging and technological applications due to their large absorption cross-section for visible light and high fluorescence quantum yield. These applications require a clear understanding of the dye's inherent photophysics and the effect of a condensed-phase environment. Here, the gas-phase photophysics of the rose bengal doubly deprotonated dianion [RB - 2H]2-, deprotonated monoanion [RB - H]-, and doubly deprotonated radical anion [RB - 2H]•- is investigated using photodetachment, photoelectron, and dispersed fluorescence action spectroscopies, and tandem ion mobility spectrometry (IMS) coupled with laser excitation. For [RB - 2H]2-, photodetachment action spectroscopy reveals a clear band in the visible (450-580 nm) with vibronic structure. Electron affinity and repulsive Coulomb barrier (RCB) properties of the dianion are characterized using frequency-resolved photoelectron spectroscopy, revealing a decreased RCB compared with that of fluorescein dianions due to electron delocalization over halogen atoms. Monoanions [RB - H]- and [RB - 2H]•- differ in nominal mass by 1 Da but are difficult to study individually using action spectroscopies that isolate target ions using low-resolution mass spectrometry. This work shows that the two monoanions are readily distinguished and probed using the IMS-photo-IMS and photo-IMS-photo-IMS strategies, providing distinct but overlapping photodissociation action spectra in the visible spectral range. Gas-phase fluorescence was not detected from photoexcited [RB - 2H]2- due to rapid electron ejection. However, both [RB - H]- and [RB - 2H]•- show a weak fluorescence signal. The [RB - H]- action spectra show a large Stokes shift of ∼1700 cm-1, while the [RB - 2H]•- action spectra show no appreciable Stokes shift. This difference is explained by considering geometries of the ground and fluorescing states.
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Affiliation(s)
- Mark H Stockett
- Department of Physics, Stockholm University, SE-10691 Stockholm, Sweden
| | - Christina Kjær
- Department of Physics and Astronomy, Aarhus University, Aarhus 8000, Denmark
| | - Steven Daly
- Université Lyon, Université Claude Bernard Lyon 1, CNRS, Institut Lumiére Matiére UMR 5306, F-69100 Villeurbanne, France
| | - Evan J Bieske
- School of Chemistry, University of Melbourne, Parkville VIC 3010, Australia
| | - Jan R R Verlet
- Department of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
| | | | - James N Bull
- School of Chemistry, Norwich Research Park, University of East Anglia, Norwich NR4 7TJ, United Kingdom
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15
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Ohshimo K, Sato R, Misaizu F. Intramolecular Dispersion Attraction in Tetraalkylammonium Cations Revealed by Cryogenic Ion Mobility Mass Spectrometry. J Phys Chem A 2020; 124:7999-8004. [DOI: 10.1021/acs.jpca.0c04817] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Keijiro Ohshimo
- Department of Chemistry, Graduate School of Science, Tohoku University, 6-3 Aoba, Aramaki,
Aoba-ku, Sendai 980-8578, Japan
| | - Ryosuke Sato
- Department of Chemistry, Graduate School of Science, Tohoku University, 6-3 Aoba, Aramaki,
Aoba-ku, Sendai 980-8578, Japan
| | - Fuminori Misaizu
- Department of Chemistry, Graduate School of Science, Tohoku University, 6-3 Aoba, Aramaki,
Aoba-ku, Sendai 980-8578, Japan
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16
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Jacovella U, Carrascosa E, Buntine JT, Ree N, Mikkelsen KV, Jevric M, Moth-Poulsen K, Bieske EJ. Photo- and Collision-Induced Isomerization of a Charge-Tagged Norbornadiene-Quadricyclane System. J Phys Chem Lett 2020; 11:6045-6050. [PMID: 32539402 PMCID: PMC7416310 DOI: 10.1021/acs.jpclett.0c01198] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2020] [Accepted: 06/15/2020] [Indexed: 06/11/2023]
Abstract
Molecular photoswitches based on the norbornadiene-quadricylane (NBD-QC) couple have been proposed as key elements of molecular solar thermal energy storage schemes. To characterize the intrinsic properties of such systems, reversible isomerization of a charge-tagged NBD-QC carboxylate couple is investigated in a tandem ion mobility mass spectrometer, using light to induce intramolecular [2 + 2] cycloaddition of NBD carboxylate to form the QC carboxylate and driving the back reaction with molecular collisions. The NBD carboxylate photoisomerization action spectrum recorded by monitoring the QC carboxylate photoisomer extends from 290 to 360 nm with a maximum at 315 nm, and in the longer wavelength region resembles the NBD carboxylate absorption spectrum recorded in solution. Key structural and photochemical properties of the NBD-QC carboxylate system, including the gas-phase absorption spectrum and the energy storage capacity, are determined through computational studies using density functional theory.
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Affiliation(s)
- Ugo Jacovella
- School
of Chemistry, The University of Melbourne, Victoria 3010, Australia
| | - Eduardo Carrascosa
- School
of Chemistry, The University of Melbourne, Victoria 3010, Australia
| | - Jack T. Buntine
- School
of Chemistry, The University of Melbourne, Victoria 3010, Australia
| | - Nicolai Ree
- Department
of Chemistry, University of Copenhagen, Universitetsparken 5, 2100 Copenhagen Ø, Denmark
| | - Kurt V. Mikkelsen
- Department
of Chemistry, University of Copenhagen, Universitetsparken 5, 2100 Copenhagen Ø, Denmark
| | - Martyn Jevric
- Department
of Chemistry and Chemical Engineering, Chalmers
University of Technology, 41296 Gothenburg, Sweden
| | - Kasper Moth-Poulsen
- Department
of Chemistry and Chemical Engineering, Chalmers
University of Technology, 41296 Gothenburg, Sweden
| | - Evan J. Bieske
- School
of Chemistry, The University of Melbourne, Victoria 3010, Australia
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17
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Carrascosa E, Petermayer C, Scholz MS, Bull JN, Dube H, Bieske EJ. Reversible Photoswitching of Isolated Ionic Hemiindigos with Visible Light. Chemphyschem 2020; 21:680-685. [PMID: 31736199 PMCID: PMC7277040 DOI: 10.1002/cphc.201900963] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2019] [Indexed: 01/06/2023]
Abstract
Indigoid chromophores have emerged as versatile molecular photoswitches, offering efficient reversible photoisomerization upon exposure to visible light. Here we report synthesis of a new class of permanently charged hemiindigos (HIs) and characterization of photochemical properties in gas phase and solution. Gas-phase studies, which involve exposing mobility-selected ions in a tandem ion mobility mass spectrometer to tunable wavelength laser radiation, demonstrate that the isolated HI ions are photochromic and can be reversibly photoswitched between Z and E isomers. The Z and E isomers have distinct photoisomerization response spectra with maxima separated by 40-80 nm, consistent with theoretical predictions for their absorption spectra. Solvation of the HI molecules in acetonitrile displaces the absorption bands to lower energy. Together, gas-phase action spectroscopy and solution NMR and UV/Vis absorption spectroscopy represent a powerful approach for studying the intrinsic photochemical properties of HI molecular switches.
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Affiliation(s)
- Eduardo Carrascosa
- School of ChemistryThe University of Melbourne3010Parkville (VIC)Australia
| | - Christian Petermayer
- Department für Chemie and Munich Center for Integrated Protein Science CIPSMLudwig-Maximilians-Universität München81377MunichGermany
| | - Michael S. Scholz
- School of ChemistryThe University of Melbourne3010Parkville (VIC)Australia
| | - James N. Bull
- School of ChemistryThe University of Melbourne3010Parkville (VIC)Australia
- School of Chemistry, Norwich Research ParkUniversity of East AngliaNorwichNR4 7TJUnited Kingdom
| | - Henry Dube
- Department für Chemie and Munich Center for Integrated Protein Science CIPSMLudwig-Maximilians-Universität München81377MunichGermany
| | - Evan J. Bieske
- School of ChemistryThe University of Melbourne3010Parkville (VIC)Australia
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18
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Coughlan NJA, Carr PJJ, Walker SC, Zhou C, Guna M, Campbell JL, Hopkins WS. Measuring Electronic Spectra of Differential Mobility-Selected Ions in the Gas Phase. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2020; 31:405-410. [PMID: 32031386 DOI: 10.1021/jasms.9b00039] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
We describe the modification of a commercially available tandem differential mobility mass spectrometer (DMS) that has been retrofitted to facilitate photodissociation (PD) of differential mobility-separated, mass-selected molecular ions. We first show that a mixture of protonated quinoline/isoquinoline (QH+/iQH+) can be separated using differential mobility spectrometry. Efficient separation is facilitated by addition of methanol to the DMS environment and increased residence time within the DMS. In action spectroscopy experiments, we gate each isomer using appropriate DMS settings, trap the ions in the third quadrupole of a triple quadrupole mass spectrometer, and irradiate them with tunable light from an optical parametric oscillator (OPO). The resulting mass spectra are recorded as the OPO wavelength is scanned, giving PD action spectra. We compare our PD spectra with previously recorded spectra for the same species and show that our instrument reproduces previous works faithfully.
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Affiliation(s)
- Neville J A Coughlan
- Department of Chemistry , University of Waterloo , 200 University Avenue West , Waterloo , ON N2L 3G1 , Canada
| | - Patrick J J Carr
- Department of Chemistry , University of Waterloo , 200 University Avenue West , Waterloo , ON N2L 3G1 , Canada
| | - Stephen C Walker
- Department of Chemistry , University of Waterloo , 200 University Avenue West , Waterloo , ON N2L 3G1 , Canada
| | - Ce Zhou
- Department of Chemistry , University of Waterloo , 200 University Avenue West , Waterloo , ON N2L 3G1 , Canada
| | - Mircea Guna
- SCIEX , Four Valley Drive , Concord , ON L4K 4V8 , Canada
| | - J Larry Campbell
- Department of Chemistry , University of Waterloo , 200 University Avenue West , Waterloo , ON N2L 3G1 , Canada
- SCIEX , Four Valley Drive , Concord , ON L4K 4V8 , Canada
| | - W Scott Hopkins
- Department of Chemistry , University of Waterloo , 200 University Avenue West , Waterloo , ON N2L 3G1 , Canada
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19
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Carrascosa E, Bull JN, Buntine JT, da Silva G, Santos PF, Bieske EJ. Near-infrared reversible photoswitching of an isolated azobenzene-stilbene dye. Chem Phys Lett 2020. [DOI: 10.1016/j.cplett.2019.137065] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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20
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Ma HZ, McKay AI, Mravak A, Scholz MS, White JM, Mulder RJ, Bieske EJ, Bonačić-Koutecký V, O'Hair RAJ. Structural characterization and gas-phase studies of the [Ag 10H 8(L) 6] 2+ nanocluster dication. NANOSCALE 2019; 11:22880-22889. [PMID: 31763652 DOI: 10.1039/c9nr08321a] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
The reactions between silver salts and borohydrides produce a rich set of products that range from discrete mononuclear compounds through to silver nanoparticles and colloids. Previous studies using electrospray ionization mass spectrometry (ESI-MS) to track the cationic products in solutions containing sodium borohydride, silver(i) tetrafluoroborate and the bisphosphine ligands, L, bis(diphenylphosphino)methane (dppm) and bis(diphenylphosphino)amine (dppa) have identified the dications [Ag10H8(L)6]2+. Here we isolate and structurally characterize [Ag10H8(dppa)6](BF4)2, and [Ag10H8(dppa)6](NO3)2via X-ray crystallography. Both dications have nearly identical structural features consisting of a Ag10 scaffold with the atoms lying on vertices of a bicapped square antiprism. DFT calculations were carried out to suggest potential sites for the hydrides. Ion-mobility mass spectrometry experiments revealed that [Ag10H8(dppa)6]2+ and [Ag10H8(dppm)6]2+ have similar collision cross sections, while multistage mass spectrometry experiments were used to compare their unimolecular gas-phase chemistry. Although the same initial sequential ligand loss followed by cluster fission and H2 evolution is observed, the more acidic N-H of the dppa provides a more labile H for H2 loss and H/D scrambling processes as revealed by isotope labelled experiments.
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Affiliation(s)
- Howard Z Ma
- School of Chemistry and Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, 30 Flemington Rd, Parkville, Victoria 3010, Australia.
| | - Alasdair I McKay
- School of Chemistry and Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, 30 Flemington Rd, Parkville, Victoria 3010, Australia.
| | - Antonija Mravak
- Center of Excellence for Science and Technology-Integration of Mediterranean Region (STIM) at Interdisciplinary Center for Advanced Sciences and Technology (ICAST), University of Split, Poljička cesta 35, Split 21000, Croatia
| | - Michael S Scholz
- School of Chemistry and Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, 30 Flemington Rd, Parkville, Victoria 3010, Australia.
| | - Jonathan M White
- School of Chemistry and Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, 30 Flemington Rd, Parkville, Victoria 3010, Australia.
| | - Roger J Mulder
- CSIRO Manufacturing, Research Way, Clayton, Victoria 3168, Australia
| | - Evan J Bieske
- School of Chemistry and Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, 30 Flemington Rd, Parkville, Victoria 3010, Australia.
| | - Vlasta Bonačić-Koutecký
- Center of Excellence for Science and Technology-Integration of Mediterranean Region (STIM) at Interdisciplinary Center for Advanced Sciences and Technology (ICAST), University of Split, Poljička cesta 35, Split 21000, Croatia and Chemistry Department, Humboldt University of Berlin, Brook-Taylor-Strasse 2, Berlin 12489, Germany
| | - Richard A J O'Hair
- School of Chemistry and Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, 30 Flemington Rd, Parkville, Victoria 3010, Australia.
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21
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Eaton RM, Allen SJ, Bush MF. Principles of Ion Selection, Alignment, and Focusing in Tandem Ion Mobility Implemented Using Structures for Lossless Ion Manipulations (SLIM). JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2019; 30:1115-1125. [PMID: 30963456 DOI: 10.1007/s13361-019-02170-1] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/16/2019] [Revised: 02/20/2019] [Accepted: 02/20/2019] [Indexed: 06/09/2023]
Abstract
Tandem ion mobility (IM) enables the characterization of subpopulations of ions from larger ensembles, including differences that cannot be resolved in a single dimension of IM. Tandem IM consists of at least two IM regions that are each separated by an ion selection region. In many implementations of tandem IM, ions eluting from a dimension of separation are filtered and immediately transferred to the subsequent dimension of separation (selection-only experiments). We recently reported a mode of operation in which ions eluting from a dimension are trapped prior to the subsequent dimension (selection-trapping experiments), which was implemented on an instrument constructed using the structures for lossless ion manipulations (SLIM) architecture. Here, we use a combination of experiments and trajectory simulations to characterize aspects of the selection, trapping, and separation processes underlying these modes of operation. For example, the actual temporal profile of filtered ions can be very similar to the width of the waveforms used for selection, but depending on experimental parameters, can differ by up to ± 500 μs. Experiments and simulations indicate that ions in selection-trapping experiments can be spatially focused between dimensions, which removes the broadening that occurred during the preceding dimension. During focusing, individual ions are thermalized, which aligns and establishes common initial conditions for the subsequent dimension. Therefore, selection-trapping experiments appear to offer significant advantages relative to selection-only experiments, which we anticipate will become more pronounced in future experiments that make use of longer IM separations, additional dimensions of analysis, and the outcomes of this study. Graphical Abstract.
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Affiliation(s)
- Rachel M Eaton
- Department of Chemistry, University of Washington, Box 351700, Seattle, WA, 98195-1700, USA
| | - Samuel J Allen
- Department of Chemistry, University of Washington, Box 351700, Seattle, WA, 98195-1700, USA
| | - Matthew F Bush
- Department of Chemistry, University of Washington, Box 351700, Seattle, WA, 98195-1700, USA.
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22
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Bull JN, West CW, Anstöter CS, da Silva G, Bieske EJ, Verlet JRR. Ultrafast photoisomerisation of an isolated retinoid. Phys Chem Chem Phys 2019; 21:10567-10579. [PMID: 31073587 DOI: 10.1039/c9cp01624d] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
The photoinduced excited state dynamics of gas-phase trans-retinoate (deprotonated trans-retinoic acid, trans-RA-) are studied using tandem ion mobility spectrometry coupled with laser spectroscopy, and frequency-, angle- and time-resolved photoelectron imaging. Photoexcitation of the bright S3(ππ*) ← S0 transition leads to internal conversion to the S1(ππ*) state on a ≈80 fs timescale followed by recovery of S0 and concomitant isomerisation to give the 13-cis (major) and 9-cis (minor) photoisomers on a ≈180 fs timescale. The sub-200 fs stereoselective photoisomerisation parallels that for the retinal protonated Schiff base chromophore in bacteriorhodopsin. Measurements on trans-RA- in methanol using the solution photoisomerisation action spectroscopy technique show that 13-cis-RA- is also the principal photoisomer, although the 13-cis and 9-cis photoisomers are formed with an inverted branching ratio with photon energy in methanol when compared with the gas phase, presumably due to solvent-induced modification of potential energy surfaces and inhibition of electron detachment processes. Comparison of the gas-phase time-resolved data with transient absorption spectroscopy measurements on retinoic acid in methanol suggest that photoisomerisation is roughly six times slower in solution. This work provides clear evidence that solvation significantly affects the photoisomerisation dynamics of retinoid molecules.
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Affiliation(s)
- James N Bull
- School of Chemistry, Norwich Research Park, University of East Anglia, Norwich NR4 7TJ, UK.
| | - Christopher W West
- Department of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa Oiwake-cho, Sakyo-Ku, Kyoto 606-8502, Japan
| | - Cate S Anstöter
- Department of Chemistry, Durham University, Durham DH1 3LE, UK
| | - Gabriel da Silva
- Department of Chemical Engineering, University of Melbourne, Parkville, VIC 3010, Australia
| | - Evan J Bieske
- School of Chemistry, University of Melbourne, Parkville, VIC 3010, Australia
| | - Jan R R Verlet
- Department of Chemistry, Durham University, Durham DH1 3LE, UK
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23
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Choi CM, Kulesza A, Daly S, MacAleese L, Antoine R, Dugourd P, Chirot F. Ion mobility resolved photo-fragmentation to discriminate protomers. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2019; 33 Suppl 1:28-34. [PMID: 29885203 DOI: 10.1002/rcm.8202] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2018] [Revised: 06/01/2018] [Accepted: 06/04/2018] [Indexed: 06/08/2023]
Abstract
RATIONALE Among the sources of structural diversity in biomolecular ions, the co-existence of protomers is particularly difficult to take into account, which in turn complicates structural interpretation of gas-phase data. METHODS We investigated the sensitivity of gas-phase photo-fragmentation measurements and ion mobility spectrometry (IMS) to the protonation state of a model peptide derivatized with chromophores. Accessible interconversion pathways between the different identified conformers were probed by tandem ion mobility measurement. Furthermore, the excitation coupling between the chromophores has been probed through photo-fragmentation measurements on mobility-selected ions. All results were interpreted based on molecular dynamics simulations. RESULTS We show that protonation can significantly affect the photo-fragmentation yields. Especially, conformers with very close collision cross sections (CCSs) may display dramatically different photo-fragmentation yields in relation with different protonation patterns. CONCLUSIONS We show that, even if precise structure assignment based on molecular modeling is in principle difficult for large biomolecular assemblies, the combination of photo-fragmentation and IMS can help to identify the signature of protomer co-existence for a population of biomolecular ions in the gas phase. Such spectroscopic data are particularly suitable to follow conformational changes.
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Affiliation(s)
- Chang Min Choi
- Mass Spectrometry and Advanced Instrumentation Research Group, Div. of Scientific Instrumentation, Korea Basic Science Institute, Cheongju, Republic of Korea
| | - Alexander Kulesza
- CNRS, UMR5306 Institut Lumière Matière, Univ Lyon, Université Claude Bernard Lyon 1, 69622, Villeurbanne cedex, France
| | - Steven Daly
- CNRS, UMR5306 Institut Lumière Matière, Univ Lyon, Université Claude Bernard Lyon 1, 69622, Villeurbanne cedex, France
| | - Luke MacAleese
- CNRS, UMR5306 Institut Lumière Matière, Univ Lyon, Université Claude Bernard Lyon 1, 69622, Villeurbanne cedex, France
| | - Rodolphe Antoine
- CNRS, UMR5306 Institut Lumière Matière, Univ Lyon, Université Claude Bernard Lyon 1, 69622, Villeurbanne cedex, France
| | - Philippe Dugourd
- CNRS, UMR5306 Institut Lumière Matière, Univ Lyon, Université Claude Bernard Lyon 1, 69622, Villeurbanne cedex, France
| | - Fabien Chirot
- CNRS, Ens de Lyon, UMR5280 Institut Sciences Analytiques, Univ Lyon, Université Claude Bernard Lyon 1, 69100, Villeurbanne, France
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24
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Bull JN, Silva GD, Scholz MS, Carrascosa E, Bieske EJ. Photoinitiated Intramolecular Proton Transfer in Deprotonated para-Coumaric Acid. J Phys Chem A 2019; 123:4419-4430. [DOI: 10.1021/acs.jpca.9b02023] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- James N. Bull
- School of Chemistry, University of Melbourne, Parkville, VIC 3010, Australia
- School of Chemistry, Norwich Research Park, University of East Anglia, Norwich NR4 7TJ, United Kingdom
| | - Gabriel da Silva
- Department of Chemical Engineering, University of Melbourne, Parkville, VIC 3010, Australia
| | - Michael S. Scholz
- School of Chemistry, University of Melbourne, Parkville, VIC 3010, Australia
| | - Eduardo Carrascosa
- School of Chemistry, University of Melbourne, Parkville, VIC 3010, Australia
| | - Evan J. Bieske
- School of Chemistry, University of Melbourne, Parkville, VIC 3010, Australia
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25
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A strategy for absolute quantitation of isomers using high performance liquid chromatography-ion mobility mass spectrometry and material balance principle. J Chromatogr A 2018; 1571:140-146. [DOI: 10.1016/j.chroma.2018.08.007] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2018] [Revised: 07/24/2018] [Accepted: 08/03/2018] [Indexed: 02/01/2023]
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26
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Lalande M, Comby-Zerbino C, Bouakil M, Dugourd P, Chirot F, Poully JC. Isolated Collagen Mimetic Peptide Assemblies Have Stable Triple-Helix Structures. Chemistry 2018; 24:13728-13733. [PMID: 30025188 DOI: 10.1002/chem.201802929] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2018] [Indexed: 11/07/2022]
Abstract
The origin of the triple-helix structure and high stability of collagen has been debated for many years. As models of the triple helix and building blocks for new biomaterials, collagen mimetic peptide (CMP) assemblies have been deeply studied in the condensed phase. In particular, it was found that hydroxylation of proline, an abundant post-translational modification in collagen, increases its stability. Two main hypotheses emerged to account for this behavior: 1) intra-helix stereoelectronic effects, and 2) the role of water molecules H-bound to hydroxyproline side-chains. However, in condensed-phase investigations, the influence of water cannot be fully removed. Therefore, we employed a combination of tandem ion mobility and mass spectrometries to assess the structure and stability of CMP assemblies in the gas phase. These results show a conservation of the structure and stability properties of triple helix models in the absence of solvent, supporting an important role of stereoelectronic effects. Moreover, evidence that small triple helix assemblies with controlled stoichiometry can be studied in the gas phase is given, which opens new perspectives in the understanding of the first steps of collagen fiber growth.
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Affiliation(s)
- Mathieu Lalande
- CIMAP laboratory, UMR 6252 (CEA/CNRS/ENSICAEN/Université de Caen Normandie), Boulevard Becquerel, 14070, Caen, France
| | - Clothilde Comby-Zerbino
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, UMR5306 Institut Lumière Matière, 69622, Villeurbanne cedex, France
| | - Mathilde Bouakil
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, UMR5306 Institut Lumière Matière, 69622, Villeurbanne cedex, France
| | - Philippe Dugourd
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, UMR5306 Institut Lumière Matière, 69622, Villeurbanne cedex, France
| | - Fabien Chirot
- Univ Lyon, Université Claude Bernard Lyon 1, ENS de Lyon, UMR5280 Institut Sciences Analytiques, 69100, Villeurbanne, France
| | - Jean-Christophe Poully
- CIMAP laboratory, UMR 6252 (CEA/CNRS/ENSICAEN/Université de Caen Normandie), Boulevard Becquerel, 14070, Caen, France
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27
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Bull JN, Carrascosa E, Giacomozzi L, Bieske EJ, Stockett MH. Ion mobility action spectroscopy of flavin dianions reveals deprotomer-dependent photochemistry. Phys Chem Chem Phys 2018; 20:19672-19681. [PMID: 30014081 PMCID: PMC6063075 DOI: 10.1039/c8cp03244k] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
Photo-induced proton transfer, deprotomer-dependent photochemistry, and intramolecular charge transfer in flavin anions are investigated using action spectroscopy.
The intrinsic optical properties and photochemistry of flavin adenine dinucleotide (FAD) dianions are investigated using a combination of tandem ion mobility spectrometry and action spectroscopy. Two principal isomers are observed, the more stable form being deprotonated on the isoalloxazine group and a phosphate (N-3,PO4 deprotomer), and the other on the two phosphates (PO4,PO4 deprotomer). Ion mobility data and electronic action spectra suggest that photo-induced proton transfer occurs from the isoalloxazine group to a phosphate group, converting the PO4,PO4 deprotomer to the N-3,PO4 deprotomer. Comparisons of the isomer selective action spectra of FAD dianions and flavin monoanions with solution spectra and gas-phase photodissociation action spectra suggests that solvation shifts the electronic absorption of the deprotonated isoalloxazine group to higher energy. This is interpreted as evidence for significant charge transfer in the lowest optical transition of deprotonated isoalloxazine. Overall, this work demonstrates that the site of deprotonation of flavin anions strongly affects their electronic absorptions and photochemistry.
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Affiliation(s)
- James N Bull
- School of Chemistry, University of Melbourne, Melbourne, VIC 3010, Australia
| | - Eduardo Carrascosa
- School of Chemistry, University of Melbourne, Melbourne, VIC 3010, Australia
| | | | - Evan J Bieske
- School of Chemistry, University of Melbourne, Melbourne, VIC 3010, Australia
| | - Mark H Stockett
- School of Chemistry, University of Melbourne, Melbourne, VIC 3010, Australia and Department of Physics, Stockholm University, Stockholm, Sweden.
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28
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Kamrath MZ, Rizzo TR. Combining Ion Mobility and Cryogenic Spectroscopy for Structural and Analytical Studies of Biomolecular Ions. Acc Chem Res 2018; 51:1487-1495. [PMID: 29746100 DOI: 10.1021/acs.accounts.8b00133] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Ion mobility spectrometry (IMS) has become a valuable tool in biophysical and bioanalytical chemistry because of its ability to separate and characterize the structure of gas-phase biomolecular ions on the basis of their collisional cross section (CCS). Its importance has grown with the realization that in many cases, biomolecular ions retain important structural characteristics when produced in the gas phase by electrospray ionization (ESI). While a CCS can help distinguish between structures of radically different types, one cannot expect a single number to differentiate similar conformations of a complex molecule. Molecular spectroscopy has also played an increasingly important role for structural characterization of biomolecular ions. Spectroscopic measurements, particularly when performed at cryogenic temperatures, can be extremely sensitive to small changes in a molecule's conformation and provide tight constraints for calculations of biomolecular structures. However, spectra of complex molecules can be heavily congested due to the presence of multiple stable conformations, each of which can have a distinct spectrum. This congestion can inhibit spectral analysis and complicate the extraction of structural information. Even when a single conformation is present, the conformational search process needed to match a measured spectrum with a computed structure can be overwhelming for peptides of more than a few amino acids, for example. We have recently combined ion mobility spectrometry and cryogenic ion spectroscopy (CIS) to characterize the structures of gas-phase biomolecular ions. In this Account, we illustrate how the coupling of IMS and CIS is by nature synergistic. On the one hand, IMS can be used as a conformational filter to reduce spectral congestion that arises from heterogeneous samples, facilitating structural analysis. On the other hand, highly resolved, cryogenic spectra can serve as a selective detector for IMS that can increase the effective resolution and hence the maximum number of distinct species that can be detected. Taken together, spectra and CCS measurements on the same system facilitates structural analysis and strengthens the conclusions that can be drawn from each type of data. After describing different approaches to combining these two techniques in such a way as to simplify the data obtained from each one separately, we present two examples that illustrate the type of insight gained from using spectra and CCS data together for characterizing gas-phase biomolecular ions. In one example, the CCS is used as a constraint for quantum chemical structure calculations of kinetically trapped species, where a lowest-energy criterion is not applicable. In a second example, we use both the CCS and a cryogenic infrared spectrum as a means to distinguish isomeric glycans.
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Affiliation(s)
- Michael Z. Kamrath
- Laboratoire de Chimie Physique Moléculaire, École Polytechnique Fédérale de Lausanne, EPFL SB ISIC LCPM, Station 6, CH-1015 Lausanne, Switzerland
| | - Thomas R. Rizzo
- Laboratoire de Chimie Physique Moléculaire, École Polytechnique Fédérale de Lausanne, EPFL SB ISIC LCPM, Station 6, CH-1015 Lausanne, Switzerland
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29
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Bull JN, Scholz MS, Carrascosa E, da Silva G, Bieske EJ. Double Molecular Photoswitch Driven by Light and Collisions. PHYSICAL REVIEW LETTERS 2018; 120:223002. [PMID: 29906145 DOI: 10.1103/physrevlett.120.223002] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/21/2017] [Indexed: 06/08/2023]
Abstract
The shapes of many molecules can be transformed by light or heat. Here we investigate collision- and photon-induced interconversions of EE, EZ, and ZZ isomers of the isolated Congo red (CR) dianion, a double molecular switch containing two ─N═N─ azo groups, each of which can have the E or Z configuration. We find that collisional activation of CR dianions drives a one-way ZZ→EZ→EE cascade towards the lowest-energy isomer, whereas the absorption of a single photon over the 270-600 nm range can switch either azo group from E to Z or Z to E, driving the CR dianion to lower- or higher-energy forms. The experimental results, which are interpreted with the aid of calculated statistical isomerization rates, indicate that photoisomerization of CR in the gas phase involves a passage through conical intersection seams linking the excited and ground state potential energy surfaces rather than through isomerization on the ground state potential energy surface following internal conversion.
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Affiliation(s)
- James N Bull
- School of Chemistry, University of Melbourne, Parkville, Victoria 3010, Australia
| | - Michael S Scholz
- School of Chemistry, University of Melbourne, Parkville, Victoria 3010, Australia
| | - Eduardo Carrascosa
- School of Chemistry, University of Melbourne, Parkville, Victoria 3010, Australia
| | - Gabriel da Silva
- Department of Chemical Engineering, University of Melbourne, Parkville, Victoria 3010, Australia
| | - Evan J Bieske
- School of Chemistry, University of Melbourne, Parkville, Victoria 3010, Australia
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30
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Carrascosa E, Bull JN, Scholz MS, Coughlan NJA, Olsen S, Wille U, Bieske EJ. Reversible Photoisomerization of the Isolated Green Fluorescent Protein Chromophore. J Phys Chem Lett 2018; 9:2647-2651. [PMID: 29724104 DOI: 10.1021/acs.jpclett.8b01201] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Fluorescent proteins have revolutionized the visualization of biological processes, prompting efforts to understand and control their intrinsic photophysics. Here we investigate the photoisomerization of deprotonated p-hydroxybenzylidene-2,3-dimethylimidazolinone anion (HBDI-), the chromophore in green fluorescent protein and in Dronpa protein, where it plays a role in switching between fluorescent and nonfluorescent states. In the present work, isolated HBDI- molecules are switched between the Z and E forms in the gas phase in a tandem ion mobility mass spectrometer outfitted for selecting the initial and final isomers. Excitation of the S1 ← S0 transition provokes both Z → E and E → Z photoisomerization, with a maximum response for both processes at 480 nm. Photodetachment is a minor channel at low light intensity. At higher light intensities, absorption of several photons in the drift region drives photofragmentation, through channels involving CH3 loss and concerted CO and CH3CN loss, although isomerization remains the dominant process.
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Affiliation(s)
- Eduardo Carrascosa
- School of Chemistry , The University of Melbourne , Parkville , Victoria 3010 , Australia
| | - James N Bull
- School of Chemistry , The University of Melbourne , Parkville , Victoria 3010 , Australia
| | - Michael S Scholz
- School of Chemistry , The University of Melbourne , Parkville , Victoria 3010 , Australia
| | - Neville J A Coughlan
- School of Chemistry , The University of Melbourne , Parkville , Victoria 3010 , Australia
| | - Seth Olsen
- School of Chemistry , Monash University , Clayton , Victoria 3800 , Australia
| | - Uta Wille
- School of Chemistry , The University of Melbourne , Parkville , Victoria 3010 , Australia
| | - Evan J Bieske
- School of Chemistry , The University of Melbourne , Parkville , Victoria 3010 , Australia
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31
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Scholz MS, Bull JN, Carrascosa E, Adamson BD, Kosgei GK, Rack JJ, Bieske EJ. Linkage Photoisomerization of an Isolated Ruthenium Sulfoxide Complex: Sequential versus Concerted Rearrangement. Inorg Chem 2018; 57:5701-5706. [PMID: 29663799 DOI: 10.1021/acs.inorgchem.8b00871] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Ruthenium sulfoxide complexes undergo thermally reversible linkage isomerization of sulfoxide ligands from S- to O-bound in response to light. Here, we report photoisomerization action spectra for a ruthenium bis-sulfoxide molecular photoswitch, [Ru(bpy)2(bpSO)]2+, providing the first direct evidence for photoisomerization of a transition metal complex in the gas phase. The linkage isomers are separated and isolated in a tandem drift tube ion mobility spectrometer and exposed to tunable laser radiation provoking photoisomerization. Direct switching of the S,S-isomer to the O,O-isomer following absorption of a single photon is the predominant isomerization pathway in the gas phase, unlike in solution, where stepwise isomerization is observed with each sulfoxide ligand switching in turn. The change in isomerization dynamics is attributed to rapid vibrational quenching that suppresses isomerization in solution. Supporting electronic structure calculations predict the wavelengths and intensities of the peaks in the photoisomerization action spectra of the S,S- and S,O-isomers, indicating that they correspond to metal-to-ligand charge transfer (MLCT) and ligand-centered ππ* transitions.
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Affiliation(s)
- Michael S Scholz
- School of Chemistry , University of Melbourne , Parkville , Victoria 3010 , Australia
| | - James N Bull
- School of Chemistry , University of Melbourne , Parkville , Victoria 3010 , Australia
| | - Eduardo Carrascosa
- School of Chemistry , University of Melbourne , Parkville , Victoria 3010 , Australia
| | - Brian D Adamson
- School of Chemistry , University of Melbourne , Parkville , Victoria 3010 , Australia.,Sandia National Laboratories, Livermore , California 94550 , United States
| | - Gilbert K Kosgei
- Department of Chemistry and Chemical Biology , University of New Mexico , Albuquerque , New Mexico 87131 , United States
| | - Jeffrey J Rack
- Department of Chemistry and Chemical Biology , University of New Mexico , Albuquerque , New Mexico 87131 , United States
| | - Evan J Bieske
- School of Chemistry , University of Melbourne , Parkville , Victoria 3010 , Australia
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32
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Poad BLJ, Maccarone AT, Yu H, Mitchell TW, Saied EM, Arenz C, Hornemann T, Bull JN, Bieske EJ, Blanksby SJ. Differential-Mobility Spectrometry of 1-Deoxysphingosine Isomers: New Insights into the Gas Phase Structures of Ionized Lipids. Anal Chem 2018; 90:5343-5351. [PMID: 29608293 DOI: 10.1021/acs.analchem.8b00469] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Separation and structural identification of lipids remain a major challenge for contemporary lipidomics. Regioisomeric lipids differing only in position(s) of unsaturation are often not differentiated by conventional liquid chromatography-mass spectrometry approaches leading to the incomplete, or sometimes incorrect, assignation of molecular structure. Here we describe an investigation of the gas phase separations by differential-mobility spectrometry (DMS) of a series of synthetic analogues of the recently described 1-deoxysphingosine. The dependence of the DMS behavior on the position of the carbon-carbon double bond within the ionized lipid is systematically explored and compared to trends from complementary investigations, including collision cross-sections measured by drift tube ion mobility, reaction efficiency with ozone, and molecular dynamics simulations. Consistent trends across these modes of interrogation point to the importance of direct, through-space interactions between the charge site and the carbon-carbon double bond. Differences in the geometry and energetics of this intramolecular interaction underpin DMS separations and influence reactivity trends between regioisomers. Importantly, the disruption and reformation of these intramolecular solvation interactions during DMS are proposed to be the causative factor in the observed separations of ionized lipids which are shown to have otherwise identical collision cross-sections. These findings provide key insights into the strengths and limitations of current ion-mobility technologies for lipid isomer separations and can thus guide a more systematic approach to improved analytical separations in lipidomics.
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Affiliation(s)
- Berwyck L J Poad
- Central Analytical Research Facility, Institute for Future Environments , Queensland University of Technology , Brisbane , Queensland 4001 , Australia
| | - Alan T Maccarone
- Mass Spectrometry User Resource and Research Facility , University of Wollongong , Wollongong , New South Wales 2522 , Australia.,School of Chemistry , University of Wollongong , Wollongong , New South Wales 2522 , Australia
| | - Haibo Yu
- School of Chemistry , University of Wollongong , Wollongong , New South Wales 2522 , Australia
| | - Todd W Mitchell
- School of Medicine , University of Wollongong , Wollongong , New South Wales 2522 , Australia
| | - Essa M Saied
- Institute for Chemistry , Humboldt Universität zu Berlin , 12489 Berlin , Germany.,Chemistry Department, Faculty of Science , Suez Canal University , 41522 Ismailia , Egypt
| | - Christoph Arenz
- Institute for Chemistry , Humboldt Universität zu Berlin , 12489 Berlin , Germany
| | - Thorsten Hornemann
- Institute of Clinical Chemistry , University Hospital of Zurich , CH-8091 Zurich , Switzerland
| | - James N Bull
- School of Chemistry , University of Melbourne , Parkville , Victoria 3010 , Australia
| | - Evan J Bieske
- School of Chemistry , University of Melbourne , Parkville , Victoria 3010 , Australia
| | - Stephen J Blanksby
- Central Analytical Research Facility, Institute for Future Environments , Queensland University of Technology , Brisbane , Queensland 4001 , Australia
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33
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Bull JN, Carrascosa E, Mallo N, Scholz MS, da Silva G, Beves JE, Bieske EJ. Photoswitching an Isolated Donor-Acceptor Stenhouse Adduct. J Phys Chem Lett 2018; 9:665-671. [PMID: 29356541 DOI: 10.1021/acs.jpclett.7b03402] [Citation(s) in RCA: 33] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Donor-acceptor Stenhouse adducts (DASAs) are a new class of photoswitching molecules with excellent fatigue resistance and synthetic tunability. Here, tandem ion mobility mass spectrometry coupled with laser excitation is used to characterize the photocyclization reaction of isolated, charge-tagged DASA molecules over the 450-580 nm range. The experimental maximum response at 530 nm agrees with multireference perturbation theory calculations for the S1 ← S0 transition maximum at 533 nm. Photocyclization in the gas phase involves absorption of at least two photons; the first photon induces Z-E isomerization from the linear isomer to metastable intermediate isomers, while the second photon drives another E-Z isomerization and 4π-electrocyclization reaction. Cyclization is thermally reversible in the gas phase with collisional excitation.
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Affiliation(s)
- James N Bull
- School of Chemistry, University of Melbourne , Parkville, Victoria 3010, Australia
| | - Eduardo Carrascosa
- School of Chemistry, University of Melbourne , Parkville, Victoria 3010, Australia
| | - Neil Mallo
- School of Chemistry, UNSW Sydney , High Street, Kensington, New South Wales 2052, Australia
| | - Michael S Scholz
- School of Chemistry, University of Melbourne , Parkville, Victoria 3010, Australia
| | - Gabriel da Silva
- Department of Chemical Engineering, University of Melbourne , Parkville, Victoria 3010, Australia
| | - Jonathon E Beves
- School of Chemistry, UNSW Sydney , High Street, Kensington, New South Wales 2052, Australia
| | - Evan J Bieske
- School of Chemistry, University of Melbourne , Parkville, Victoria 3010, Australia
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34
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Czerwinska I, Kulesza A, Choi C, Chirot F, Simon AL, Far J, Kune C, de Pauw E, Dugourd P. Supramolecular influence on cis-trans isomerization probed by ion mobility spectrometry. Phys Chem Chem Phys 2018; 18:32331-32336. [PMID: 27853790 DOI: 10.1039/c6cp06168k] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
We used tandem ion mobility spectrometry measurements to investigate how the photo-isomerization of a chromophore (a methylpyridinium derivative) is affected by the complexation with a crown ether. A dramatic blue-shift of the photo-isomerization spectrum was observed upon complexation, which could be well reproduced by ab initio calculations. Our results support that the observed changes in the photo-physical properties of the chromophore originate from the charge-solvation of its pyridinium moiety by the host cage.
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Affiliation(s)
- Izabella Czerwinska
- Mass Spectrometry Laboratory, University of Liège, Quartier Agora, Allée du Six Aout 11, B-4000 Liège, Belgium
| | - Alexander Kulesza
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, Institut Lumière Matière, F-69622, Villeurbanne, France
| | - Changmin Choi
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, Institut Lumière Matière, F-69622, Villeurbanne, France
| | - Fabien Chirot
- Univ Lyon, Université Claude Bernard Lyon 1, Ens de Lyon, CNRS, Institut des Sciences Analytiques, UMR 5280, 5 rue de la Doua, F-69100, Villeurbanne, France.
| | - Anne-Laure Simon
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, Institut Lumière Matière, F-69622, Villeurbanne, France
| | - Johann Far
- Mass Spectrometry Laboratory, University of Liège, Quartier Agora, Allée du Six Aout 11, B-4000 Liège, Belgium
| | | | - Edwin de Pauw
- Mass Spectrometry Laboratory, University of Liège, Quartier Agora, Allée du Six Aout 11, B-4000 Liège, Belgium
| | - Philippe Dugourd
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, Institut Lumière Matière, F-69622, Villeurbanne, France
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35
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Bull JN, Scholz MS, Carrascosa E, Bieske EJ. FromEtoZand back again: reversible photoisomerisation of an isolated charge-tagged azobenzene. Phys Chem Chem Phys 2018; 20:509-513. [DOI: 10.1039/c7cp07278c] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Substituted azobenzenes serve as chromophores and actuators in a wide range of molecular photoswitches.
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Affiliation(s)
- James N. Bull
- School of Chemistry
- University of Melbourne
- Parkville
- Australia
| | | | | | - Evan J. Bieske
- School of Chemistry
- University of Melbourne
- Parkville
- Australia
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36
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Scholz MS, Bull JN, Coughlan NJA, Carrascosa E, Adamson BD, Bieske EJ. Photoisomerization of Protonated Azobenzenes in the Gas Phase. J Phys Chem A 2017; 121:6413-6419. [DOI: 10.1021/acs.jpca.7b05902] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
| | - James N. Bull
- School
of Chemistry, University of Melbourne, Melbourne, Australia
| | - Neville J. A. Coughlan
- School
of Chemistry, University of Melbourne, Melbourne, Australia
- Department
of Chemistry, University of Oxford, Oxford, United Kingdom
| | | | - Brian D. Adamson
- School
of Chemistry, University of Melbourne, Melbourne, Australia
- Sandia National Laboratories, Livermore, California 94551, United States
| | - Evan J. Bieske
- School
of Chemistry, University of Melbourne, Melbourne, Australia
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37
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Bull JN, Coughlan NJA, Bieske EJ. Protomer-Specific Photochemistry Investigated Using Ion Mobility Mass Spectrometry. J Phys Chem A 2017; 121:6021-6027. [DOI: 10.1021/acs.jpca.7b05800] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- James N. Bull
- School of Chemistry, University of Melbourne, Parkville, VIC 3010, Australia
| | | | - Evan J. Bieske
- School of Chemistry, University of Melbourne, Parkville, VIC 3010, Australia
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38
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Georgiou DC, Haghighatbin MA, Hogan CF, Scholz MS, Bull JN, Bieske EJ, Wilson DJD, Dutton JL. A Strong
cis
‐Effect in an Imidazole‐Imidazolium‐Substituted Alkene. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201702287] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Dayne C. Georgiou
- Department of Chemistry and Physics La Trobe Institute for Molecular Science La Trobe University Melbourne Victoria 3086 Australia
| | - Mohammad A. Haghighatbin
- Department of Chemistry and Physics La Trobe Institute for Molecular Science La Trobe University Melbourne Victoria 3086 Australia
| | - Conor F. Hogan
- Department of Chemistry and Physics La Trobe Institute for Molecular Science La Trobe University Melbourne Victoria 3086 Australia
| | - Michael S. Scholz
- School of Chemistry University of Melbourne Parkville Victoria 3010 Australia
| | - James N. Bull
- School of Chemistry University of Melbourne Parkville Victoria 3010 Australia
| | - Evan J. Bieske
- School of Chemistry University of Melbourne Parkville Victoria 3010 Australia
| | - David J. D. Wilson
- Department of Chemistry and Physics La Trobe Institute for Molecular Science La Trobe University Melbourne Victoria 3086 Australia
| | - Jason L. Dutton
- Department of Chemistry and Physics La Trobe Institute for Molecular Science La Trobe University Melbourne Victoria 3086 Australia
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39
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Lim SF, Harris BL, Khairallah GN, Bieske EJ, Maître P, da Silva G, Adamson BD, Scholz MS, Coughlan NJA, O'Hair RAJ, Rathjen M, Stares D, White JM. Seleniranium Ions Undergo π-Ligand Exchange via an Associative Mechanism in the Gas Phase. J Org Chem 2017; 82:6289-6297. [PMID: 28530810 DOI: 10.1021/acs.joc.7b00877] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Collision-induced dissociation mass spectrometry of the ammonium ions 4a and 4b results in the formation of the seleniranium ion 5, the structure and purity of which were verified using gas-phase infrared spectroscopy coupled to mass spectrometry and gas-phase ion-mobility measurements. Ion-molecule reactions between the ion 5 (m/z = 261) and cyclopentene, cyclohexene, cycloheptene, and cyclooctene resulted in the formation of the seleniranium ions 7 (m/z = 225), 6 (m/z = 239), 8 (m/z = 253), and 9 (m/z = 267), respectively. Further reaction of seleniranium 6 with cyclopentene resulted in further π-ligand exchange giving seleniranium ion 7, confirming that direct π-ligand exchange between seleniranium ion 5 and cycloalkenes occurs in the gas phase. Pseudo-first-order kinetics established relative reaction efficiencies for π-ligand exchange for cyclopentene, cyclohexene, cycloheptene. and cyclooctene as 0.20, 0.07, 0.43, and 4.32. respectively. DFT calculations at the M06/6-31+G(d) level of theory provide the following insights into the mechanism of the π-ligand exchange reactions; the cycloalkene forms a complex with the seleniranium ion 5 with binding energies of 57 and 62 kJ/mol for cyclopentene and cyclohexene, respectively, with transition states for π-ligand exchange having barriers of 17.8 and 19.3 kJ/mol for cyclopentene and cyclohexene, respectively.
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Affiliation(s)
- S Fern Lim
- School of Chemistry and Bio21 Institute, University of Melbourne , Parkville, Melbourne 3010, Australia
| | - Benjamin L Harris
- School of Chemistry and Bio21 Institute, University of Melbourne , Parkville, Melbourne 3010, Australia
| | - George N Khairallah
- School of Chemistry and Bio21 Institute, University of Melbourne , Parkville, Melbourne 3010, Australia.,Accurate Mass Scientific Pty Ltd., P.O. Box 92, Keilor, VIC 3036, Australia
| | - E J Bieske
- School of Chemistry and Bio21 Institute, University of Melbourne , Parkville, Melbourne 3010, Australia
| | - Philippe Maître
- Laboratoire de Chimie Physique, Université Paris-Sud, CNRS, Université Paris-Saclay , F-91405 Orsay, France
| | - Gabriel da Silva
- Chemical and Biomolecular Engineering, University of Melbourne , Parkville, Melbourne 3010, Australia
| | - Brian D Adamson
- School of Chemistry and Bio21 Institute, University of Melbourne , Parkville, Melbourne 3010, Australia
| | - Michael S Scholz
- School of Chemistry and Bio21 Institute, University of Melbourne , Parkville, Melbourne 3010, Australia
| | - Neville J A Coughlan
- School of Chemistry and Bio21 Institute, University of Melbourne , Parkville, Melbourne 3010, Australia
| | - Richard A J O'Hair
- School of Chemistry and Bio21 Institute, University of Melbourne , Parkville, Melbourne 3010, Australia
| | - Michael Rathjen
- School of Chemistry and Bio21 Institute, University of Melbourne , Parkville, Melbourne 3010, Australia
| | - Daniel Stares
- School of Chemistry and Bio21 Institute, University of Melbourne , Parkville, Melbourne 3010, Australia
| | - Jonathan M White
- School of Chemistry and Bio21 Institute, University of Melbourne , Parkville, Melbourne 3010, Australia
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40
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Georgiou DC, Haghighatbin MA, Hogan CF, Scholz MS, Bull JN, Bieske EJ, Wilson DJD, Dutton JL. A Strong
cis
‐Effect in an Imidazole‐Imidazolium‐Substituted Alkene. Angew Chem Int Ed Engl 2017; 56:8473-8480. [DOI: 10.1002/anie.201702287] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2017] [Indexed: 01/02/2023]
Affiliation(s)
- Dayne C. Georgiou
- Department of Chemistry and Physics La Trobe Institute for Molecular Science La Trobe University Melbourne Victoria 3086 Australia
| | - Mohammad A. Haghighatbin
- Department of Chemistry and Physics La Trobe Institute for Molecular Science La Trobe University Melbourne Victoria 3086 Australia
| | - Conor F. Hogan
- Department of Chemistry and Physics La Trobe Institute for Molecular Science La Trobe University Melbourne Victoria 3086 Australia
| | - Michael S. Scholz
- School of Chemistry University of Melbourne Parkville Victoria 3010 Australia
| | - James N. Bull
- School of Chemistry University of Melbourne Parkville Victoria 3010 Australia
| | - Evan J. Bieske
- School of Chemistry University of Melbourne Parkville Victoria 3010 Australia
| | - David J. D. Wilson
- Department of Chemistry and Physics La Trobe Institute for Molecular Science La Trobe University Melbourne Victoria 3086 Australia
| | - Jason L. Dutton
- Department of Chemistry and Physics La Trobe Institute for Molecular Science La Trobe University Melbourne Victoria 3086 Australia
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41
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Zheng X, Renslow RS, Makola MM, Webb IK, Deng L, Thomas DG, Govind N, Ibrahim YM, Kabanda MM, Dubery IA, Heyman HM, Smith RD, Madala NE, Baker ES. Structural Elucidation of cis/trans Dicaffeoylquinic Acid Photoisomerization Using Ion Mobility Spectrometry-Mass Spectrometry. J Phys Chem Lett 2017; 8:1381-1388. [PMID: 28267339 PMCID: PMC5627994 DOI: 10.1021/acs.jpclett.6b03015] [Citation(s) in RCA: 38] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
Due to the recently uncovered health benefits and anti-HIV activities of dicaffeoylquinic acids (diCQAs), understanding their structures and functions is of great interest for drug discovery efforts. DiCQAs are analytically challenging to identify and quantify since they commonly exist as a diverse mixture of positional and geometric (cis/trans) isomers. In this work, we utilized ion mobility spectrometry coupled with mass spectrometry to separate the various isomers before and after UV irradiation. The experimental collision cross sections were then compared with theoretical structures to differentiate and identify the diCQA isomers. Our analyses found that naturally the diCQAs existed predominantly as trans/trans isomers, but after 3 h of UV irradiation, cis/cis, cis/trans, trans/cis, and trans/trans isomers were all present in the mixture. This is the first report of successful differentiation of cis/trans diCQA isomers individually, which shows the great promise of IMS coupled with theoretical calculations for determining the structure and activity relationships of different isomers in drug discovery studies.
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Affiliation(s)
- Xueyun Zheng
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington 99354, United States
| | - Ryan S. Renslow
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington 99354, United States
| | - Mpho M. Makola
- Department of Biochemistry, University of Johannesburg, P.O. Box 524, Auckland Park 2006, South Africa
| | - Ian K. Webb
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington 99354, United States
| | - Liulin Deng
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington 99354, United States
| | - Dennis G. Thomas
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington 99354, United States
| | - Niranjan Govind
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington 99354, United States
| | - Yehia M. Ibrahim
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington 99354, United States
| | - Mwadham M. Kabanda
- Department of Chemistry, Faculty of Agriculture, Science and Technology, North-West University, Mafikeng Campus, Private Bag X 2046, Mmabatho 2735, South Africa
- Material Science Innovation and Modelling (MaSIM) Research Focus Area, School of Mathematical and Physical Science, North-West University, Mafikeng Campus, Private Bag X 2046, Mmabatho 2735, South Africa
| | - Ian A. Dubery
- Department of Biochemistry, University of Johannesburg, P.O. Box 524, Auckland Park 2006, South Africa
| | - Heino M. Heyman
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington 99354, United States
| | - Richard D. Smith
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington 99354, United States
| | - Ntakadzeni E. Madala
- Department of Biochemistry, University of Johannesburg, P.O. Box 524, Auckland Park 2006, South Africa
- Corresponding Authors: (E.S.B) Address: 902 Battelle Blvd., P.O. Box 999, MSIN K8-98 Richland, WA 99352. Phone: 509-371-6219; . (N.E.M.) Address: P.O. Box 524, Auckland Park, 2006, South Africa. Phone: +27115594573;
| | - Erin S. Baker
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington 99354, United States
- Corresponding Authors: (E.S.B) Address: 902 Battelle Blvd., P.O. Box 999, MSIN K8-98 Richland, WA 99352. Phone: 509-371-6219; . (N.E.M.) Address: P.O. Box 524, Auckland Park, 2006, South Africa. Phone: +27115594573;
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42
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Greisch JF, Chmela J, Harding ME, Wunderlich D, Schäfer B, Ruben M, Klopper W, Schooss D, Kappes MM. Correlation of the structural information obtained for europium-chelate ensembles from gas-phase photoluminescence and ion-mobility spectroscopy with density-functional computations and ligand-field theory. Phys Chem Chem Phys 2017; 19:6105-6112. [PMID: 28191564 DOI: 10.1039/c6cp04656h] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We report a combined investigation of europium(iii)9-oxo-phenalen-1-one (PLN) coordination complexes, [Eu(PLN)4AE]+ with AE = Mg, Ca, and Sr, using gas-phase photoluminescence, trapped ion-mobility spectrometry and density-functional computations. In order to sort out the structural impact of the alkali earth dications on the photoluminescence spectra, the experimental data are compared to the predicted ligand-field splittings as well as to the collision cross-sections for different isomers of [Eu(PLN)4AE]+. The best fitting interpretation is that one isomer family predominantly contributes to the recorded luminescence. The present work demonstrates the complexity of the coordination patterns of multicenter lanthanoid chelates involved in dynamical equilibria and the pertinence of using isolation techniques to elucidate their photophysical properties.
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Affiliation(s)
- Jean-François Greisch
- Institute of Nanotechnology, Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany.
| | - Jiří Chmela
- Institute of Physical Chemistry, Karlsruhe Institute of Technology (KIT), Fritz-Haber-Weg 2, 76131 Karlsruhe, Germany
| | - Michael E Harding
- Institute of Nanotechnology, Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany.
| | - Dirk Wunderlich
- Bruker Daltonik GmbH, Fahrenheitstraße 4, 28359 Bremen, Germany.
| | - Bernhard Schäfer
- Institute of Nanotechnology, Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany.
| | - Mario Ruben
- Institute of Nanotechnology, Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany. and Institut de Physique et Chimie des Matériaux de Strasbourg (IPCMS), CNRS-Université de Strasbourg, Rue du Loess 23, BP 43, 67034 Strasbourg Cedex 2, France
| | - Wim Klopper
- Institute of Nanotechnology, Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany. and Institute of Physical Chemistry, Karlsruhe Institute of Technology (KIT), Fritz-Haber-Weg 2, 76131 Karlsruhe, Germany
| | - Detlef Schooss
- Institute of Nanotechnology, Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany. and Institute of Physical Chemistry, Karlsruhe Institute of Technology (KIT), Fritz-Haber-Weg 2, 76131 Karlsruhe, Germany
| | - Manfred M Kappes
- Institute of Nanotechnology, Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany. and Institute of Physical Chemistry, Karlsruhe Institute of Technology (KIT), Fritz-Haber-Weg 2, 76131 Karlsruhe, Germany
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43
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Bull JN, Carrascosa E, Scholz MS, Coughlan NJA, Bieske EJ. Online measurement of photoisomerisation efficiency in solution using ion mobility mass spectrometry. Analyst 2017; 142:2100-2103. [DOI: 10.1039/c7an00398f] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
A new method for probing the photoisomerisation of molecules in solution using ion mobility mass spectrometry is described and demonstrated with a azoheteroarene photoswitch.
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Affiliation(s)
- James N. Bull
- School of Chemistry
- University of Melbourne
- Melbourne
- Australia
| | | | | | | | - Evan J. Bieske
- School of Chemistry
- University of Melbourne
- Melbourne
- Australia
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44
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Bull JN, Scholz MS, Coughlan NJA, Bieske EJ. Isomerisation of an intramolecular hydrogen-bonded photoswitch: protonated azobis(2-imidazole). Phys Chem Chem Phys 2017; 19:12776-12783. [DOI: 10.1039/c7cp01733b] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Reversible E–Z photoswitching of a protonated azoheteroarene is demonstrated using ion mobility mass spectrometry.
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Affiliation(s)
- James N. Bull
- School of Chemistry
- University of Melbourne
- Parkville
- Australia
| | | | | | - Evan J. Bieske
- School of Chemistry
- University of Melbourne
- Parkville
- Australia
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45
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Bull JN, Scholz MS, Coughlan NJA, Kawai A, Bieske EJ. Monitoring Isomerization of Molecules in Solution Using Ion Mobility Mass Spectrometry. Anal Chem 2016; 88:11978-11981. [DOI: 10.1021/acs.analchem.6b04000] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- James N. Bull
- School
of Chemistry, University of Melbourne, Melbourne, Victoria 3010, Australia
| | - Michael S. Scholz
- School
of Chemistry, University of Melbourne, Melbourne, Victoria 3010, Australia
| | | | - Akio Kawai
- Department
of Chemistry, Graduate School of Science and Engineering, Tokyo Institute of Technology, Ohokayama, Meguro-ku, Tokyo 152-8551, Japan
| | - Evan J. Bieske
- School
of Chemistry, University of Melbourne, Melbourne, Victoria 3010, Australia
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46
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Coughlan NJA, Scholz MS, Hansen CS, Trevitt AJ, Adamson BD, Bieske EJ. Photo and Collision Induced Isomerization of a Cyclic Retinal Derivative: An Ion Mobility Study. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2016; 27:1483-1490. [PMID: 27278825 DOI: 10.1007/s13361-016-1427-8] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2016] [Revised: 05/10/2016] [Accepted: 05/20/2016] [Indexed: 06/06/2023]
Abstract
A cationic degradation product, formed in solution from retinal Schiff base (RSB), is examined in the gas phase using ion mobility spectrometry, photoisomerization action spectroscopy, and collision induced dissociation (CID). The degradation product is found to be N-n-butyl-2-(β-ionylidene)-4-methylpyridinium (BIP) produced through 6π electrocyclization of RSB followed by protonation and loss of dihydrogen. Ion mobility measurements show that BIP exists as trans and cis isomers that can be interconverted through buffer gas collisions and by exposure to light, with a maximum response at λ = 420 nm.Graphical Abstract.
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Affiliation(s)
| | - Michael S Scholz
- School of Chemistry, University of Melbourne, Melbourne, Australia
| | | | - Adam J Trevitt
- School of Chemistry, University of Wollongong, Wollongong, Australia
| | - Brian D Adamson
- School of Chemistry, University of Melbourne, Melbourne, Australia
| | - Evan J Bieske
- School of Chemistry, University of Melbourne, Melbourne, Australia.
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47
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Coughlan NJA, Wallace CM, Adamson BD, Bieske EJ. Photoisomerization of β-Ionone Protonated Schiff Base in the Gas Phase. J Phys Chem A 2016; 120:6557-62. [PMID: 27483192 DOI: 10.1021/acs.jpca.6b05645] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
The photoisomerization of β-ionone protonated Schiff base (BIPSB) is investigated in the gas phase by irradiating mobility-selected ions in a tandem ion mobility spectrometer with tunable radiation. Four distinguishable isomers are produced by electrospray ionization whose structures are deduced from their collision cross sections and photoisomerization behavior along with density functional theory calculations. They include two geometric isomers of BIPSB with trans or cis configurations about the polyene chain's terminal C═N double bond, a bicyclic structure formed through electrocyclization of the polyene chain, and a Z-retro-γ-ionone isomer. Although trans-BIPSB and 9-cis-BIPSB have similar photoisomerization action spectra, with a maximum response at 375 nm, they photoconvert to different isomers. The trans-BIPSB isomer transforms to the bicyclic form upon exposure to light over the 320-400 nm range, whereas the cis-BIPSB isomer is prevented by steric hindrance from forming the bicyclic BIPSB isomer following irradiation and is proposed instead to form the 7,9-di-cis isomer. Neither the bicyclic isomer nor the Z-retro-γ-ionone isomer respond strongly to near-UV light.
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Affiliation(s)
| | - Claire M Wallace
- School of Chemistry, The University of Melbourne , Victoria 3010, Australia
| | - Brian D Adamson
- School of Chemistry, The University of Melbourne , Victoria 3010, Australia
| | - Evan J Bieske
- School of Chemistry, The University of Melbourne , Victoria 3010, Australia
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48
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Webb IK, Garimella SVB, Norheim RV, Baker ES, Ibrahim YM, Smith RD. A Structures for Lossless Ion Manipulations (SLIM) Module for Collision Induced Dissociation. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2016; 27:1285-8. [PMID: 27098413 PMCID: PMC4899216 DOI: 10.1007/s13361-016-1397-x] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2016] [Revised: 03/15/2016] [Accepted: 03/23/2016] [Indexed: 05/13/2023]
Abstract
A collision induced dissociation (CID) structure for lossless ion manipulations (SLIM) module is introduced and coupled to a quadrupole time-of-flight (QTOF) mass spectrometer. The SLIM CID module was mounted after an ion mobility (IM) drift tube to enable IM/CID/MS studies. The efficiency of CID was studied by using the model peptide leucine enkephalin. CID efficiencies (62%) compared favorably with other beam-type CID methods. Additionally, the SLIM CID module was used to fragment a mixture of nine peptides after IM separation. This work also represents the first application of SLIM in the 0.3 to 0.5 Torr pressure regime, an order of magnitude lower in pressure than previously studied. Graphical Abstract ᅟ.
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Affiliation(s)
- Ian K Webb
- Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, 3335 Innovation Ave. (K8-98), P.O. Box 999, Richland, WA, 99352, USA
| | - Sandilya V B Garimella
- Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, 3335 Innovation Ave. (K8-98), P.O. Box 999, Richland, WA, 99352, USA
| | - Randolph V Norheim
- Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, 3335 Innovation Ave. (K8-98), P.O. Box 999, Richland, WA, 99352, USA
| | - Erin S Baker
- Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, 3335 Innovation Ave. (K8-98), P.O. Box 999, Richland, WA, 99352, USA
| | - Yehia M Ibrahim
- Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, 3335 Innovation Ave. (K8-98), P.O. Box 999, Richland, WA, 99352, USA
| | - Richard D Smith
- Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, 3335 Innovation Ave. (K8-98), P.O. Box 999, Richland, WA, 99352, USA.
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49
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Rijs NJ, Weiske T, Schlangen M, Schwarz H. Effect of adduct formation with molecular nitrogen on the measured collisional cross sections of transition metal-1,10-phenanthroline complexes in traveling wave ion-mobility spectrometry: N2 is not always an "inert" buffer gas. Anal Chem 2015; 87:9769-76. [PMID: 26378338 DOI: 10.1021/acs.analchem.5b01985] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
The number of separations and analyses of molecular species using traveling wave ion-mobility spectrometry-mass spectrometry (TWIMS-MS) is increasing, including those extending the technique to analytes containing metal atoms. A critical aspect of such applications of TWIMS-MS is the validity of the collisional cross sections (CCSs) measured and whether they can be accurately calibrated against other ion-mobility spectrometry (IMS) techniques. Many metal containing species have potential reactivity toward molecular nitrogen, which is present in high concentration in the typical Synapt-G2 TWIMS cell. Here, we analyze the effect of nitrogen on the drift time of a series of cationic 1,10-phenanthroline complexes of the late transition metals, [(phen)M](+), (M = Ni, Pd, Pt, Cu, Ag, Au, Zn, Cd, and Hg) in order to understand potential deviations from expected drift time behaviors. These metal complexes were chosen for their metal open-coordination site and lack of rotameric species. The target species were generated via electrospray ionization (ESI), analyzed using TWIMS in N2 drift gas, and the observed drift time trends compared. Theoretically derived CCSs for all species (via both the projection approximation and trajectory method) were also compared. The results show that, indeed, for metal containing species in this size regime, reaction with molecular nitrogen has a dramatic effect on measured drift times and must not be ignored when comparing and interpreting TWIMS arrival time distributions. Density-functional theory (DFT) calculations are employed to analyze the periodic differences due to the metal's interaction with nitrogen (and background water) in detail.
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Affiliation(s)
- Nicole J Rijs
- Institut für Chemie, Technische Universität Berlin , Strasse des 17. Juni 135, 10623 Berlin, Germany
| | - Thomas Weiske
- Institut für Chemie, Technische Universität Berlin , Strasse des 17. Juni 135, 10623 Berlin, Germany
| | - Maria Schlangen
- Institut für Chemie, Technische Universität Berlin , Strasse des 17. Juni 135, 10623 Berlin, Germany
| | - Helmut Schwarz
- Institut für Chemie, Technische Universität Berlin , Strasse des 17. Juni 135, 10623 Berlin, Germany
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50
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Alata I, Scuderi D, Lepere V, Steinmetz V, Gobert F, Thiao-Layel L, Le Barbu-Debus K, Zehnacker-Rentien A. Exotic Protonated Species Produced by UV-Induced Photofragmentation of a Protonated Dimer: Metastable Protonated Cinchonidine. J Phys Chem A 2015; 119:10007-15. [DOI: 10.1021/acs.jpca.5b06506] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Ivan Alata
- Institut des Sciences
Moléculaires d’Orsay (ISMO), CNRS, Univ Paris-Sud, Université Paris Saclay, F-91405 Orsay, France
| | - Debora Scuderi
- Laboratoire de
Chimie Physique (LCP), CNRS, Univ Paris-Sud, Université Paris Saclay, F-91405 Orsay, France
| | - Valeria Lepere
- Institut des Sciences
Moléculaires d’Orsay (ISMO), CNRS, Univ Paris-Sud, Université Paris Saclay, F-91405 Orsay, France
| | - Vincent Steinmetz
- Laboratoire de
Chimie Physique (LCP), CNRS, Univ Paris-Sud, Université Paris Saclay, F-91405 Orsay, France
| | - Fabrice Gobert
- Laboratoire de
Chimie Physique (LCP), CNRS, Univ Paris-Sud, Université Paris Saclay, F-91405 Orsay, France
| | - Loïc Thiao-Layel
- Laboratoire de
Chimie Physique (LCP), CNRS, Univ Paris-Sud, Université Paris Saclay, F-91405 Orsay, France
| | - Katia Le Barbu-Debus
- Institut des Sciences
Moléculaires d’Orsay (ISMO), CNRS, Univ Paris-Sud, Université Paris Saclay, F-91405 Orsay, France
| | - Anne Zehnacker-Rentien
- Institut des Sciences
Moléculaires d’Orsay (ISMO), CNRS, Univ Paris-Sud, Université Paris Saclay, F-91405 Orsay, France
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