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Wątorek M, Szydło P, Kwapień J, Drożdż S. Correlations versus noise in the NFT market. CHAOS (WOODBURY, N.Y.) 2024; 34:073112. [PMID: 38958538 DOI: 10.1063/5.0214399] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2024] [Accepted: 06/14/2024] [Indexed: 07/04/2024]
Abstract
The non-fungible token (NFT) market emerges as a recent trading innovation leveraging blockchain technology, mirroring the dynamics of the cryptocurrency market. The current study is based on the capitalization changes and transaction volumes across a large number of token collections on the Ethereum platform. In order to deepen the understanding of the market dynamics, the inter-collection dependencies are examined by using the multivariate formalism of detrended correlation coefficient and correlation matrix. It appears that correlation strength is lower here than that observed in previously studied markets. Consequently, the eigenvalue spectra of the correlation matrix more closely follow the Marchenko-Pastur distribution, still, some departures indicating the existence of correlations remain. The comparison of results obtained from the correlation matrix built from the Pearson coefficients and, independently, from the detrended cross-correlation coefficients suggests that the global correlations in the NFT market arise from higher frequency fluctuations. Corresponding minimal spanning trees for capitalization variability exhibit a scale-free character while, for the number of transactions, they are somewhat more decentralized.
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Affiliation(s)
- Marcin Wątorek
- Faculty of Computer Science and Telecommunications, Cracow University of Technology, ul. Warszawska 24, 31-155 Kraków, Poland
| | - Paweł Szydło
- Faculty of Computer Science and Telecommunications, Cracow University of Technology, ul. Warszawska 24, 31-155 Kraków, Poland
| | - Jarosław Kwapień
- Complex Systems Theory Department, Institute of Nuclear Physics, Polish Academy of Sciences, ul. Radzikowskiego 152, 31-342 Kraków, Poland
| | - Stanisław Drożdż
- Faculty of Computer Science and Telecommunications, Cracow University of Technology, ul. Warszawska 24, 31-155 Kraków, Poland
- Complex Systems Theory Department, Institute of Nuclear Physics, Polish Academy of Sciences, ul. Radzikowskiego 152, 31-342 Kraków, Poland
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2
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Szydło P, Wątorek M, Kwapień J, Drożdż S. Characteristics of price related fluctuations in non-fungible token (NFT) market. CHAOS (WOODBURY, N.Y.) 2024; 34:013108. [PMID: 38194369 DOI: 10.1063/5.0185306] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2023] [Accepted: 12/11/2023] [Indexed: 01/11/2024]
Abstract
A non-fungible token (NFT) market is a new trading invention based on the blockchain technology, which parallels the cryptocurrency market. In the present work, we study capitalization, floor price, the number of transactions, the inter-transaction times, and the transaction volume value of a few selected popular token collections. The results show that the fluctuations of all these quantities are characterized by heavy-tailed probability distribution functions, in most cases well described by the stretched exponentials, with a trace of power-law scaling at times, long-range memory, persistence, and in several cases even the fractal organization of fluctuations, mostly restricted to the larger fluctuations, however. We conclude that the NFT market-even though young and governed by somewhat different mechanisms of trading-shares several statistical properties with the regular financial markets. However, some differences are visible in the specific quantitative indicators.
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Affiliation(s)
- Paweł Szydło
- Faculty of Computer Science and Telecommunications, Cracow University of Technology, ul. Warszawska 24, 31-155 Kraków, Poland
| | - Marcin Wątorek
- Faculty of Computer Science and Telecommunications, Cracow University of Technology, ul. Warszawska 24, 31-155 Kraków, Poland
| | - Jarosław Kwapień
- Complex Systems Theory Department, Institute of Nuclear Physics, Polish Academy of Sciences, ul. Radzikowskiego 152, 31-342 Kraków, Poland
| | - Stanisław Drożdż
- Faculty of Computer Science and Telecommunications, Cracow University of Technology, ul. Warszawska 24, 31-155 Kraków, Poland
- Complex Systems Theory Department, Institute of Nuclear Physics, Polish Academy of Sciences, ul. Radzikowskiego 152, 31-342 Kraków, Poland
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3
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Wang W, Meng J, Li H, Fan J. Non-negative matrix factorization for overlapping community detection in directed weighted networks with sparse constraints. CHAOS (WOODBURY, N.Y.) 2023; 33:2890081. [PMID: 37163995 DOI: 10.1063/5.0152280] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2023] [Accepted: 04/19/2023] [Indexed: 05/12/2023]
Abstract
Detecting overlapping communities is essential for analyzing the structure and function of complex networks. However, most existing approaches only consider network topology and overlook the benefits of attribute information. In this paper, we propose a novel attribute-information non-negative matrix factorization approach that integrates sparse constraints and optimizes an objective function for detecting communities in directed weighted networks. Our algorithm updates the basic non-negative matrix adaptively, incorporating both network topology and attribute information. We also add a sparsity constraint term of graph regularization to maintain the intrinsic geometric structure between nodes. Importantly, we provide strict proof of convergence for the multiplication update rule used in our algorithm. We apply our proposed algorithm to various artificial and real-world networks and show that it is more effective for detecting overlapping communities. Furthermore, our study uncovers the intricate iterative process of system evolution toward convergence and investigates the impact of various variables on network detection. These findings provide insights into building more robust and operable complex systems.
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Affiliation(s)
- Wenxuan Wang
- School of Science, Beijing University of Posts and Telecommunications, Beijing 100876, China
| | - Jun Meng
- School of Science, Beijing University of Posts and Telecommunications, Beijing 100876, China
| | - Huijia Li
- School of Science, Beijing University of Posts and Telecommunications, Beijing 100876, China
| | - Jingfang Fan
- School of Systems Science/Institute of Nonequilibrium Systems, Beijing Normal University, Beijing 100875, China
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4
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Strzelecki A. The Apple Mobility Trends Data in Human Mobility Patterns during Restrictions and Prediction of COVID-19: A Systematic Review and Meta-Analysis. Healthcare (Basel) 2022; 10:2425. [PMID: 36553949 PMCID: PMC9778143 DOI: 10.3390/healthcare10122425] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2022] [Revised: 11/24/2022] [Accepted: 11/29/2022] [Indexed: 12/03/2022] Open
Abstract
The objective of this systematic review with PRISMA guidelines is to discover how population movement information has epidemiological implications for the spread of COVID-19. In November 2022, the Web of Science and Scopus databases were searched for relevant reports for the review. The inclusion criteria are: (1) the study uses data from Apple Mobility Trends Reports, (2) the context of the study is about COVID-19 mobility patterns, and (3) the report is published in a peer-reviewed venue in the form of an article or conference paper in English. The review included 35 studies in the period of 2020-2022. The main strategy used for data extraction in this review is a matrix proposal to present each study from a perspective of research objective and outcome, study context, country, time span, and conducted research method. We conclude by pointing out that these data are not often used in studies and it is better to study a single country instead of doing multiple-country research. We propose topic classifications for the context of the studies as transmission rate, transport policy, air quality, re-increased activities, economic activities, and financial markets.
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Affiliation(s)
- Artur Strzelecki
- Department of Informatics, University of Economics in Katowice, 40-287 Katowice, Poland
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5
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Her PH, Saeed S, Tram KH, Bhatnagar SR. Novel mobility index tracks COVID-19 transmission following stay-at-home orders. Sci Rep 2022; 12:7654. [PMID: 35538129 PMCID: PMC9088135 DOI: 10.1038/s41598-022-10941-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2021] [Accepted: 04/12/2022] [Indexed: 12/13/2022] Open
Abstract
Considering the emergence of SARS-CoV-2 variants and low vaccine access and uptake, minimizing human interactions remains an effective strategy to mitigate the spread of SARS-CoV-2. Using a functional principal component analysis, we created a multidimensional mobility index (MI) using six metrics compiled by SafeGraph from all counties in Illinois, Ohio, Michigan and Indiana between January 1 to December 8, 2020. Changes in mobility were defined as a time-updated 7-day rolling average. Associations between our MI and COVID-19 cases were estimated using a quasi-Poisson hierarchical generalized additive model adjusted for population density and the COVID-19 Community Vulnerability Index. Individual mobility metrics varied significantly by counties and by calendar time. More than 50% of the variability in the data was explained by the first principal component by each state, indicating good dimension reduction. While an individual metric of mobility was not associated with surges of COVID-19, our MI was independently associated with COVID-19 cases in all four states given varying time-lags. Following the expiration of stay-at-home orders, a single metric of mobility was not sensitive enough to capture the complexity of human interactions. Monitoring mobility can be an important public health tool, however, it should be modelled as a multidimensional construct.
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Affiliation(s)
- Peter Hyunwuk Her
- Department of Pharmacology and Therapeutics, McGill University, Montreal, Canada.,Department of Medical Biophysics, University of Toronto, Toronto, Canada
| | - Sahar Saeed
- Division of Infectious Diseases, Department of Medicine, Washington University School of Medicine, St. Louis, USA.,Department of Public Health Sciences, Queen's University, Ontario, Canada
| | - Khai Hoan Tram
- Division of Infectious Diseases, Department of Medicine, University of Washington, Seattle, USA
| | - Sahir R Bhatnagar
- Department of Epidemiology, Biostatistics and Occupational Health, McGill University, Montreal, Canada. .,Department of Diagnostic Radiology, McGill University, Montreal, Canada.
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6
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James N, Menzies M, Bondell H. Comparing the dynamics of COVID-19 infection and mortality in the United States, India, and Brazil. PHYSICA D. NONLINEAR PHENOMENA 2022; 432:133158. [PMID: 35075315 PMCID: PMC8769590 DOI: 10.1016/j.physd.2022.133158] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2021] [Revised: 12/06/2021] [Accepted: 01/08/2022] [Indexed: 05/07/2023]
Abstract
This paper compares and contrasts the spread and impact of COVID-19 in the three countries most heavily impacted by the pandemic: the United States (US), India and Brazil. All three of these countries have a federal structure, in which the individual states have largely determined the response to the pandemic. Thus, we perform an extensive analysis of the individual states of these three countries to determine patterns of similarity within each. First, we analyse structural similarity and anomalies in the trajectories of cases and deaths as multivariate time series. Next, we study the lengths of the different waves of the virus outbreaks across the three countries and their states. Finally, we investigate suitable time offsets between cases and deaths as a function of the distinct outbreak waves. In all these analyses, we consistently reveal more characteristically distinct behaviour between US and Indian states, while Brazilian states exhibit less structure in their wave behaviour and changing progression between cases and deaths.
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Affiliation(s)
- Nick James
- School of Mathematics and Statistics, University of Melbourne, Victoria, Australia
| | - Max Menzies
- Beijing Institute of Mathematical Sciences and Applications, Tsinghua University, Beijing, China
| | - Howard Bondell
- School of Mathematics and Statistics, University of Melbourne, Victoria, Australia
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7
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Fritz C, Dorigatti E, Rügamer D. Combining graph neural networks and spatio-temporal disease models to improve the prediction of weekly COVID-19 cases in Germany. Sci Rep 2022; 12:3930. [PMID: 35273252 PMCID: PMC8913758 DOI: 10.1038/s41598-022-07757-5] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2021] [Accepted: 02/23/2022] [Indexed: 12/11/2022] Open
Abstract
During 2020, the infection rate of COVID-19 has been investigated by many scholars from different research fields. In this context, reliable and interpretable forecasts of disease incidents are a vital tool for policymakers to manage healthcare resources. In this context, several experts have called for the necessity to account for human mobility to explain the spread of COVID-19. Existing approaches often apply standard models of the respective research field, frequently restricting modeling possibilities. For instance, most statistical or epidemiological models cannot directly incorporate unstructured data sources, including relational data that may encode human mobility. In contrast, machine learning approaches may yield better predictions by exploiting these data structures yet lack intuitive interpretability as they are often categorized as black-box models. We propose a combination of both research directions and present a multimodal learning framework that amalgamates statistical regression and machine learning models for predicting local COVID-19 cases in Germany. Results and implications: the novel approach introduced enables the use of a richer collection of data types, including mobility flows and colocation probabilities, and yields the lowest mean squared error scores throughout the observational period in the reported benchmark study. The results corroborate that during most of the observational period more dispersed meeting patterns and a lower percentage of people staying put are associated with higher infection rates. Moreover, the analysis underpins the necessity of including mobility data and showcases the flexibility and interpretability of the proposed approach.
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Affiliation(s)
- Cornelius Fritz
- Department of Statistics, Ludwig Maximilian Universität, München, Germany
| | - Emilio Dorigatti
- Department of Statistics, Ludwig Maximilian Universität, München, Germany
- Institute for Computational Biology, Helmholtz Zentrum München-German Research Center for Environmental Health, Neuherberg, Germany
| | - David Rügamer
- Department of Statistics, Ludwig Maximilian Universität, München, Germany.
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8
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Bousquet A, Conrad WH, Sadat SO, Vardanyan N, Hong Y. Deep learning forecasting using time-varying parameters of the SIRD model for Covid-19. Sci Rep 2022; 12:3030. [PMID: 35194090 PMCID: PMC8863886 DOI: 10.1038/s41598-022-06992-0] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2021] [Accepted: 02/10/2022] [Indexed: 11/09/2022] Open
Abstract
Accurate epidemiological models are necessary for governments, organizations, and individuals to respond appropriately to the ongoing novel coronavirus pandemic. One informative metric epidemiological models provide is the basic reproduction number ([Formula: see text]), which can describe if the infected population is growing ([Formula: see text]) or shrinking ([Formula: see text]). We introduce a novel algorithm that incorporates the susceptible-infected-recovered-dead model (SIRD model) with the long short-term memory (LSTM) neural network that allows for real-time forecasting and time-dependent parameter estimates, including the contact rate, [Formula: see text], and deceased rate, [Formula: see text]. With an accurate prediction of [Formula: see text] and [Formula: see text], we can directly derive [Formula: see text], and find a numerical solution of compartmental models, such as the SIR-type models. Incorporating the epidemiological model dynamics of the SIRD model into the LSTM network, the new algorithm improves forecasting accuracy. Furthermore, we utilize mobility data from cellphones and positive test rate in our prediction model, and we also present a vaccination model. Leveraging mobility and vaccination schedule is important for capturing behavioral changes by individuals in response to the pandemic as well as policymakers.
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Affiliation(s)
- Arthur Bousquet
- Department of Mathematics and Data Science, Lake Forest College, Lake Forest, CA, USA
| | - William H Conrad
- Department of Chemistry, Lake Forest College, Lake Forest, CA, USA
| | - Said Omer Sadat
- Department of Mathematics and Data Science, Lake Forest College, Lake Forest, CA, USA
| | - Nelli Vardanyan
- Department of Mathematics and Data Science, Lake Forest College, Lake Forest, CA, USA
| | - Youngjoon Hong
- Department Mathematics, Sungkyunkwan University, Suwon, South Korea.
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9
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Effectiveness of wireless emergency alerts for social distancing against COVID-19 in Korea. Sci Rep 2022; 12:2627. [PMID: 35173227 PMCID: PMC8850604 DOI: 10.1038/s41598-022-06575-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2021] [Accepted: 01/28/2022] [Indexed: 12/03/2022] Open
Abstract
This study aimed to evaluate the effectiveness of wireless emergency alerts (WEAs) on social distancing policy. The Republic of Korea has been providing information to the public through WEAs using mobile phones. This study used five data sets: WEA messages, news articles including the keyword “COVID-19,” the number of confirmed COVID-19 patients, public foot traffic data, and the government’s social distancing level. The WEAs were classified into two topics—“warning” and “guidance”—using a random forest model. The results of the correlation analysis and further detailed analysis confirmed that the “warning” WEA topic and number of news articles significantly affected public foot traffic. However, the “guidance” topic was not significantly associated with public foot traffic. In general, the Korean government’s WEAs were effective at encouraging the public to follow social distance recommendations during the COVID-19 pandemic. In particular, the “warning” WEA topic, by providing information about the relative risk directly concerning the recipients, was significantly more effective than the “guidance” topic.
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10
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Bhattacharjee S, Liao S, Paul D, Chaudhuri S. Inference on the dynamics of COVID-19 in the United States. Sci Rep 2022; 12:2253. [PMID: 35145115 PMCID: PMC8831615 DOI: 10.1038/s41598-021-04494-z] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2021] [Accepted: 12/17/2021] [Indexed: 01/01/2023] Open
Abstract
The evolution of the COVID-19 pandemic is described through a time-dependent stochastic dynamic model in discrete time. The proposed multi-compartment model is expressed through a system of difference equations. Information on the social distancing measures and diagnostic testing rates are incorporated to characterize the dynamics of the various compartments of the model. In contrast with conventional epidemiological models, the proposed model involves interpretable temporally static and dynamic epidemiological rate parameters. A model fitting strategy built upon nonparametric smoothing is employed for estimating the time-varying parameters, while profiling over the time-independent parameters. Confidence bands of the parameters are obtained through a residual bootstrap procedure. A key feature of the methodology is its ability to estimate latent unobservable compartments such as the number of asymptomatic but infected individuals who are known to be the key vectors of COVID-19 spread. The nature of the disease dynamics is further quantified by relevant epidemiological markers that make use of the estimates of latent compartments. The methodology is applied to understand the true extent and dynamics of the pandemic in various states within the United States (US).
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Affiliation(s)
| | - Shuting Liao
- Graduate Group in BioStatistics, University of California, Davis, 95616, USA
| | - Debashis Paul
- Department of Statistics, University of California, Davis, 95616, USA
| | - Sanjay Chaudhuri
- Department of Statistics and Applied Probability, National University of Singapore, Singapore, 117546, Singapore.
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11
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Lehnig CL, Oren E, Vaidya NK. Effectiveness of alternative semester break schedules on reducing COVID-19 incidence on college campuses. Sci Rep 2022; 12:2116. [PMID: 35136172 PMCID: PMC8825861 DOI: 10.1038/s41598-022-06260-1] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2021] [Accepted: 01/20/2022] [Indexed: 12/11/2022] Open
Abstract
Despite COVID-19 vaccination programs, the threat of new SARS-CoV-2 strains and continuing pockets of transmission persists. While many U.S. universities replaced their traditional nine-day spring 2021 break with multiple breaks of shorter duration, the effects these schedules have on reducing COVID-19 incidence remains unclear. The main objective of this study is to quantify the impact of alternative break schedules on cumulative COVID-19 incidence on university campuses. Using student mobility data and Monte Carlo simulations of returning infectious student size, we developed a compartmental susceptible-exposed-infectious-asymptomatic-recovered (SEIAR) model to simulate transmission dynamics among university students. As a case study, four alternative spring break schedules were derived from a sample of universities and evaluated. Across alternative multi-break schedules, the median percent reduction of total semester COVID-19 incidence, relative to a traditional nine-day break, ranged from 2 to 4% (for 2% travel destination prevalence) and 8-16% (for 10% travel destination prevalence). The maximum percent reduction from an alternate break schedule was estimated to be 37.6%. Simulation results show that adjusting academic calendars to limit student travel can reduce disease burden. Insights gleaned from our simulations could inform policies regarding appropriate planning of schedules for upcoming semesters upon returning to in-person teaching modalities.
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Affiliation(s)
- Chris L Lehnig
- Computational Science Research Center, San Diego State University, San Diego, USA
| | - Eyal Oren
- Division of Epidemiology and Biostatistics, School of Public Health, San Diego State University, San Diego, USA
| | - Naveen K Vaidya
- Computational Science Research Center, San Diego State University, San Diego, USA.
- Department of Mathematics and Statistics, San Diego State University, San Diego, USA.
- Viral Information Institute, San Diego State University, San Diego, USA.
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12
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James N, Menzies M, Bondell H. In search of peak human athletic potential: A mathematical investigation. CHAOS (WOODBURY, N.Y.) 2022; 32:023110. [PMID: 35232056 DOI: 10.1063/5.0073141] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2021] [Accepted: 01/21/2022] [Indexed: 06/14/2023]
Abstract
This paper applies existing and new approaches to study trends in the performance of elite athletes over time. We study both track and field scores of men and women athletes on a yearly basis from 2001 to 2019, revealing several trends and findings. First, we perform a detailed regression study to reveal the existence of an "Olympic effect," where average performance improves during Olympic years. Next, we study the rate of change in athlete performance and fail to reject the notion that athlete scores are leveling off, at least among the top 100 annual scores. Third, we examine the relationship in performance trends among men and women's categories of the same event, revealing striking similarity, together with some anomalous events. Finally, we analyze the geographic composition of the world's top athletes, attempting to understand how the diversity by country and continent varies over time across events. We challenge a widely held conception of athletics that certain events are more geographically dominated than others. Our methods and findings could be applied more generally to identify evolutionary dynamics in group performance and highlight spatiotemporal trends in group composition.
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Affiliation(s)
- Nick James
- School of Mathematics and Statistics, University of Melbourne, Melbourne, Victoria 3010, Australia
| | - Max Menzies
- Beijing Institute of Mathematical Sciences and Applications, Tsinghua University, Beijing 101408, China
| | - Howard Bondell
- School of Mathematics and Statistics, University of Melbourne, Melbourne, Victoria 3010, Australia
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13
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Newcomb K, Smith ME, Donohue RE, Wyngaard S, Reinking C, Sweet CR, Levine MJ, Unnasch TR, Michael E. Iterative data-driven forecasting of the transmission and management of SARS-CoV-2/COVID-19 using social interventions at the county-level. Sci Rep 2022; 12:890. [PMID: 35042958 PMCID: PMC8766467 DOI: 10.1038/s41598-022-04899-4] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2021] [Accepted: 12/23/2021] [Indexed: 12/24/2022] Open
Abstract
The control of the initial outbreak and spread of SARS-CoV-2/COVID-19 via the application of population-wide non-pharmaceutical mitigation measures have led to remarkable successes in dampening the pandemic globally. However, with countries beginning to ease or lift these measures fully to restart activities, concern is growing regarding the impacts that such reopening of societies could have on the subsequent transmission of the virus. While mathematical models of COVID-19 transmission have played important roles in evaluating the impacts of these measures for curbing virus transmission, a key need is for models that are able to effectively capture the effects of the spatial and social heterogeneities that drive the epidemic dynamics observed at the local community level. Iterative forecasting that uses new incoming epidemiological and social behavioral data to sequentially update locally-applicable transmission models can overcome this gap, potentially resulting in better predictions and policy actions. Here, we present the development of one such data-driven iterative modelling tool based on publicly available data and an extended SEIR model for forecasting SARS-CoV-2 at the county level in the United States. Using data from the state of Florida, we demonstrate the utility of such a system for exploring the outcomes of the social measures proposed by policy makers for containing the course of the pandemic. We provide comprehensive results showing how the locally identified models could be employed for accessing the impacts and societal tradeoffs of using specific social protective strategies. We conclude that it could have been possible to lift the more disruptive social interventions related to movement restriction/social distancing measures earlier if these were accompanied by widespread testing and contact tracing. These intensified social interventions could have potentially also brought about the control of the epidemic in low- and some medium-incidence county settings first, supporting the development and deployment of a geographically-phased approach to reopening the economy of Florida. We have made our data-driven forecasting system publicly available for policymakers and health officials to use in their own locales, so that a more efficient coordinated strategy for controlling SARS-CoV-2 region-wide can be developed and successfully implemented.
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Affiliation(s)
- Ken Newcomb
- Center for Global Health Infectious Disease Research, University of South Florida, Tampa, FL, USA
| | - Morgan E Smith
- Department of Biological Sciences, University of Notre Dame, Notre Dame, IN, USA
| | - Rose E Donohue
- Department of Biological Sciences, University of Notre Dame, Notre Dame, IN, USA
| | - Sebastian Wyngaard
- Center for Research Computing, University of Notre Dame, Notre Dame, IN, USA
| | - Caleb Reinking
- Center for Research Computing, University of Notre Dame, Notre Dame, IN, USA
| | - Christopher R Sweet
- Center for Research Computing, University of Notre Dame, Notre Dame, IN, USA
| | - Marissa J Levine
- Center for Leadership in Public Health Practice, University of South Florida, Tampa, FL, USA
| | - Thomas R Unnasch
- Center for Global Health Infectious Disease Research, University of South Florida, Tampa, FL, USA
| | - Edwin Michael
- Center for Global Health Infectious Disease Research, University of South Florida, Tampa, FL, USA.
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14
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James N, Menzies M. Estimating a continuously varying offset between multivariate time series with application to COVID-19 in the United States. THE EUROPEAN PHYSICAL JOURNAL. SPECIAL TOPICS 2022; 231:3419-3426. [PMID: 35035778 PMCID: PMC8749119 DOI: 10.1140/epjs/s11734-022-00430-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/28/2021] [Accepted: 12/18/2021] [Indexed: 05/04/2023]
Abstract
This paper introduces new methods to track the offset between two multivariate time series on a continuous basis. We then apply this framework to COVID-19 counts on a state-by-state basis in the United States to determine the progression from cases to deaths as a function of time. Across multiple approaches, we reveal an "up-down-up" pattern in the estimated offset between reported cases and deaths as the pandemic progresses. This analysis could be used to predict imminent increased load on a healthcare system and aid the allocation of additional resources in advance.
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Affiliation(s)
- Nick James
- School of Mathematics and Statistics, University of Melbourne, Parkville, VIC 3010 Australia
| | - Max Menzies
- Beijing Institute of Mathematical Sciences and Applications, Tsinghua University, Beijing, 101408 China
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15
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Predicting regional COVID-19 hospital admissions in Sweden using mobility data. Sci Rep 2021; 11:24171. [PMID: 34921175 PMCID: PMC8683437 DOI: 10.1038/s41598-021-03499-y] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2021] [Accepted: 11/30/2021] [Indexed: 02/07/2023] Open
Abstract
The transmission of COVID-19 is dependent on social mixing, the basic rate of which varies with sociodemographic, cultural, and geographic factors. Alterations in social mixing and subsequent changes in transmission dynamics eventually affect hospital admissions. We employ these observations to model and predict regional hospital admissions in Sweden during the COVID-19 pandemic. We use an SEIR-model for each region in Sweden in which the social mixing is assumed to depend on mobility data from public transport utilisation and locations for mobile phone usage. The results show that the model could capture the timing of the first and beginning of the second wave of the pandemic 3 weeks in advance without any additional assumptions about seasonality. Further, we show that for two major regions of Sweden, models with public transport data outperform models using mobile phone usage. We conclude that a model based on routinely collected mobility data makes it possible to predict future hospital admissions for COVID-19 3 weeks in advance.
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16
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Kwapień J, Wątorek M, Drożdż S. Cryptocurrency Market Consolidation in 2020-2021. ENTROPY (BASEL, SWITZERLAND) 2021; 23:1674. [PMID: 34945980 PMCID: PMC8700307 DOI: 10.3390/e23121674] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/18/2021] [Revised: 12/06/2021] [Accepted: 12/09/2021] [Indexed: 12/26/2022]
Abstract
Time series of price returns for 80 of the most liquid cryptocurrencies listed on Binance are investigated for the presence of detrended cross-correlations. A spectral analysis of the detrended correlation matrix and a topological analysis of the minimal spanning trees calculated based on this matrix are applied for different positions of a moving window. The cryptocurrencies become more strongly cross-correlated among themselves than they used to be before. The average cross-correlations increase with time on a specific time scale in a way that resembles the Epps effect amplification when going from past to present. The minimal spanning trees also change their topology and, for the short time scales, they become more centralized with increasing maximum node degrees, while for the long time scales they become more distributed, but also more correlated at the same time. Apart from the inter-market dependencies, the detrended cross-correlations between the cryptocurrency market and some traditional markets, like the stock markets, commodity markets, and Forex, are also analyzed. The cryptocurrency market shows higher levels of cross-correlations with the other markets during the same turbulent periods, in which it is strongly cross-correlated itself.
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Affiliation(s)
- Jarosław Kwapień
- Complex Systems Theory Department, Institute of Nuclear Physics, Polish Academy of Sciences, ul. Radzikowskiego 152, 31-342 Kraków, Poland;
| | - Marcin Wątorek
- Faculty of Computer Science and Telecommunications, Cracow University of Technology, ul. Warszawska 24, 31-155 Kraków, Poland;
| | - Stanisław Drożdż
- Complex Systems Theory Department, Institute of Nuclear Physics, Polish Academy of Sciences, ul. Radzikowskiego 152, 31-342 Kraków, Poland;
- Faculty of Computer Science and Telecommunications, Cracow University of Technology, ul. Warszawska 24, 31-155 Kraków, Poland;
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Marqués-Sánchez P, Pinto-Carral A, Fernández-Villa T, Vázquez-Casares A, Liébana-Presa C, Benítez-Andrades JA. Identification of cohesive subgroups in a university hall of residence during the COVID-19 pandemic using a social network analysis approach. Sci Rep 2021; 11:22055. [PMID: 34764333 PMCID: PMC8586037 DOI: 10.1038/s41598-021-01390-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2021] [Accepted: 10/22/2021] [Indexed: 11/29/2022] Open
Abstract
THE AIMS (i) analyze connectivity between subgroups of university students, (ii) assess which bridges of relational contacts are essential for connecting or disconnecting subgroups and (iii) to explore the similarities between the attributes of the subgroup nodes in relation to the pandemic context. During the COVID-19 pandemic, young university students have experienced significant changes in their relationships, especially in the halls of residence. Previous research has shown the importance of relationship structure in contagion processes. However, there is a lack of studies in the university setting, where students live closely together. The case study methodology was applied to carry out a descriptive study. The participation consisted of 43 university students living in the same hall of residence. Social network analysis has been applied for data analysis. Factions and Girvan-Newman algorithms have been applied to detect the existing cohesive subgroups. The UCINET tool was used for the calculation of the SNA measure. A visualization of the global network will be carried out using Gephi software. After applying the Girvan-Newman and Factions, in both cases it was found that the best division into subgroups was the one that divided the network into 4 subgroups. There is high degree of cohesion within the subgroups and a low cohesion between them. The relationship between subgroup membership and gender was significant. The degree of COVID-19 infection is related to the degree of clustering between the students. College students form subgroups in their residence. Social network analysis facilitates an understanding of structural behavior during the pandemic. The study provides evidence on the importance of gender, race and the building where they live in creating network structures that favor, or not, contagion during a pandemic.
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Affiliation(s)
- Pilar Marqués-Sánchez
- SALBIS Research Group, Department of Nursing and Physiotherapy, Universidad de León, Campus de Ponferrada s/n, 24400, Ponferrada, Spain
| | - Arrate Pinto-Carral
- SALBIS Research Group, Department of Nursing and Physiotherapy, Universidad de León, Campus de Ponferrada s/n, 24400, Ponferrada, Spain.
| | - Tania Fernández-Villa
- The Research Group in Gen-Environment and Health Interactions (GIIGAS), Institute of Biomedicine (IBIOMED), Universidad de León, 24071, León, Spain
| | - Ana Vázquez-Casares
- Department of Nursing and Physiotherapy, Universidad de León, Campus de Vegazana s/n, 24071, León, Spain
| | - Cristina Liébana-Presa
- SALBIS Research Group, Department of Nursing and Physiotherapy, Universidad de León, Campus de Ponferrada s/n, 24400, Ponferrada, Spain
| | - José Alberto Benítez-Andrades
- SALBIS Research Group, Department of Electric, Systems and Automatics Engineering, Universidad de León, Campus of Vegazana s/n, 24071, León, Spain
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Syga S, David-Rus D, Schälte Y, Hatzikirou H, Deutsch A. Inferring the effect of interventions on COVID-19 transmission networks. Sci Rep 2021; 11:21913. [PMID: 34754025 PMCID: PMC8578219 DOI: 10.1038/s41598-021-01407-y] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2021] [Accepted: 10/12/2021] [Indexed: 12/11/2022] Open
Abstract
Countries around the world implement nonpharmaceutical interventions (NPIs) to mitigate the spread of COVID-19. Design of efficient NPIs requires identification of the structure of the disease transmission network. We here identify the key parameters of the COVID-19 transmission network for time periods before, during, and after the application of strict NPIs for the first wave of COVID-19 infections in Germany combining Bayesian parameter inference with an agent-based epidemiological model. We assume a Watts-Strogatz small-world network which allows to distinguish contacts within clustered cliques and unclustered, random contacts in the population, which have been shown to be crucial in sustaining the epidemic. In contrast to other works, which use coarse-grained network structures from anonymized data, like cell phone data, we consider the contacts of individual agents explicitly. We show that NPIs drastically reduced random contacts in the transmission network, increased network clustering, and resulted in a previously unappreciated transition from an exponential to a constant regime of new cases. In this regime, the disease spreads like a wave with a finite wave speed that depends on the number of contacts in a nonlinear fashion, which we can predict by mean field theory.
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Affiliation(s)
- Simon Syga
- Center for Information Services and High Performance Computing, Technische Universität Dresden, Nöthnitzer Straße 46, 01062, Dresden, Germany
| | - Diana David-Rus
- Bavarian Health and Food Safety State Authority (LGL), Veterinärstraße 2, 85764, Oberschleißheim, Germany
| | - Yannik Schälte
- Institute of Computational Biology, Helmholtz Zentrum München - German Research Center for Environmental Health, 85764, Neuherberg, Germany
- Center for Mathematics, Technische Universität München, 85748, Garching, Germany
| | | | - Andreas Deutsch
- Center for Information Services and High Performance Computing, Technische Universität Dresden, Nöthnitzer Straße 46, 01062, Dresden, Germany.
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