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Suárez-Santiago VN, Provan J, Romero-García AT, Ben-Menni Schuler S. Genetic Diversity and Phylogeography of the Relict Tree Fern Culcita macrocarpa: Influence of Clonality and Breeding System on Genetic Variation. PLANTS (BASEL, SWITZERLAND) 2024; 13:1587. [PMID: 38931019 PMCID: PMC11207926 DOI: 10.3390/plants13121587] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2024] [Revised: 06/02/2024] [Accepted: 06/05/2024] [Indexed: 06/28/2024]
Abstract
The tree fern Culcita macrocarpa, a threatened Iberian-Macaronesian endemism, represents the sole European species of the order Cyatheales. Considered a Tertiary relict of European Palaeotropical flora, its evolutionary history and genetic diversity, potentially influenced by presumed high clonal propagation, remain largely unknown. This study elucidates the phylogeographic history of C. macrocarpa, assessing the impact of vegetative reproduction on population dynamics and genetic variability. We provide genetic data from eight newly identified nuclear microsatellite loci and one plastid DNA region for 17 populations spanning the species' range, together with species distribution modeling data. Microsatellites reveal pervasive clonality in C. macrocarpa, which has varied among populations. We assess the impact of clonality on genetic diversity and evaluate how estimates of intra-population genetic diversity indices and genetic structuring are affected by the chosen definition of "individual" (focusing exclusively on genetically distinct individuals, genets, as opposed to considering all independent clonal replicates, ramets). We identify two main population groups, one in the northern Iberian Peninsula and the other in the Macaronesian archipelagos and southern Iberian Peninsula. Within each group, we found relict populations (in the Azores and the Cantabrian Cornice) as well as recent originated populations. This population structure suggests colonization dynamics in which recent populations originated from one or a few genets of relict populations and became established through intra-gametophytic self-fertilization and vegetative expansion. DAPC analysis facilitated the identification of alleles that most significantly contributed to the observed population structure. The current Andalusian populations appear to have originated from colonization events from the Azores and the Cantabrian Cornice. Our findings suggest that C. macrocarpa persisted through the Last Glacial Maximum in two refugia: the Azores and the Cantabrian Cornice. Colonization into new areas occurred presumably from these refuges, generating two large population groups with structured genetic diversity. This study underscores the significance of clonality in establishing new populations and shaping genetic structure.
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Affiliation(s)
| | - Jim Provan
- Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, Aberystwyth SY23 3DA, UK
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Rincón-Barrado M, Villaverde T, Perez MF, Sanmartín I, Riina R. The sweet tabaiba or there and back again: phylogeographical history of the Macaronesian Euphorbia balsamifera. ANNALS OF BOTANY 2024; 133:883-904. [PMID: 38197716 PMCID: PMC11082519 DOI: 10.1093/aob/mcae001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2023] [Accepted: 03/01/2024] [Indexed: 01/11/2024]
Abstract
BACKGROUND AND AIMS Biogeographical relationships between the Canary Islands and north-west Africa are often explained by oceanic dispersal and geographical proximity. Sister-group relationships between Canarian and eastern African/Arabian taxa, the 'Rand Flora' pattern, are rare among plants and have been attributed to the extinction of north-western African populations. Euphorbia balsamifera is the only representative species of this pattern that is distributed in the Canary Islands and north-west Africa; it is also one of few species present in all seven islands. Previous studies placed African populations of E. balsamifera as sister to the Canarian populations, but this relationship was based on herbarium samples with highly degraded DNA. Here, we test the extinction hypothesis by sampling new continental populations; we also expand the Canarian sampling to examine the dynamics of island colonization and diversification. METHODS Using target enrichment with genome skimming, we reconstructed phylogenetic relationships within E. balsamifera and between this species and its disjunct relatives. A single nucleotide polymorphism dataset obtained from the target sequences was used to infer population genetic diversity patterns. We used convolutional neural networks to discriminate among alternative Canary Islands colonization scenarios. KEY RESULTS The results confirmed the Rand Flora sister-group relationship between western E. balsamifera and Euphorbia adenensis in the Eritreo-Arabian region and recovered an eastern-western geographical structure among E. balsamifera Canarian populations. Convolutional neural networks supported a scenario of east-to-west island colonization, followed by population extinctions in Lanzarote and Fuerteventura and recolonization from Tenerife and Gran Canaria; a signal of admixture between the eastern island and north-west African populations was recovered. CONCLUSIONS Our findings support the Surfing Syngameon Hypothesis for the colonization of the Canary Islands by E. balsamifera, but also a recent back-colonization to the continent. Populations of E. balsamifera from northwest Africa are not the remnants of an ancestral continental stock, but originated from migration events from Lanzarote and Fuerteventura. This is further evidence that oceanic archipelagos are not a sink for biodiversity, but may be a source of new genetic variability.
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Affiliation(s)
- Mario Rincón-Barrado
- Real Jardín Botánico (RJB), CSIC, Madrid, 28014, Spain
- Centro Nacional de Biotecnología (CNB), CSIC, Madrid, 28049, Spain
| | - Tamara Villaverde
- Universidad Rey Juan Carlos (URJC), Área de Biodiversidad y Conservación, Móstoles, 28933, Spain
| | - Manolo F Perez
- Institut de Systématique, Evolution, Biodiversité (ISYEB – URM 7205 CNRS), Muséum National d’Histoire Naturelle, SU, EPHE & UA, Paris, France
| | | | - Ricarda Riina
- Real Jardín Botánico (RJB), CSIC, Madrid, 28014, Spain
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Dowle EJ, Trewick SA, Morgan-Richards M. Fossil-calibrated phylogenies of Southern cave wētā show dispersal and extinction confound biogeographic signal. ROYAL SOCIETY OPEN SCIENCE 2024; 11:231118. [PMID: 38356874 PMCID: PMC10864783 DOI: 10.1098/rsos.231118] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/15/2023] [Accepted: 01/19/2024] [Indexed: 02/16/2024]
Abstract
The biota of continents and islands are commonly considered to have a source-sink relationship, but small islands can harbour distinctive taxa. The distribution of four monotypic genera of Orthoptera on young subantarctic islands indicates a role for long-distance dispersal and extinction. Phylogenetic relationships were inferred from whole mtDNA genomes and nuclear sequences (45S cassette; four histones). We used a fossil and one palaeogeographic event to calibrate molecular clock analysis. We confirm that neither the Australian nor Aotearoa-New Zealand Rhaphidophoridae faunas are monophyletic. The radiation of Macropathinae may have begun in the late Jurassic, but trans-oceanic dispersal is required to explain the current distribution of some lineages within this subfamily. Dating the most recent common ancestor of seven island endemic species with their nearest mainland relative suggests that each existed long before their island home was available. Time estimates from our fossil-calibrated molecular clock analysis suggest several lineages have not been detected on mainland New Zealand, Australia, or elsewhere most probably due to their extinction, providing evidence that patterns of extinction, which are not consistently linked to range size or lineage age, confound biogeographic signal.
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Affiliation(s)
- Eddy J. Dowle
- Department of Anatomy, University of Otago, 9016 Dunedin, New Zealand
| | - Steven A. Trewick
- Ecology, School of Natural Sciences, Massey University Manawatū, Private Bag 11 222, Palmerston North 4410, New Zealand
| | - Mary Morgan-Richards
- Ecology, School of Natural Sciences, Massey University Manawatū, Private Bag 11 222, Palmerston North 4410, New Zealand
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Fichant T, Ledent A, Collart F, Vanderpoorten A. Dispersal capacities of pollen, seeds and spores: insights from comparative analyses of spatial genetic structures in bryophytes and spermatophytes. FRONTIERS IN PLANT SCIENCE 2023; 14:1289240. [PMID: 37965033 PMCID: PMC10642818 DOI: 10.3389/fpls.2023.1289240] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/05/2023] [Accepted: 10/17/2023] [Indexed: 11/16/2023]
Abstract
Introduction The dramatic fluctuations of climate conditions since the late Tertiary era have resulted in major species range shifts. These movements were conditioned by geographic barriers and species dispersal capacities. In land plants, gene flow occurs through the movement of male gametes (sperm cells, pollen grains), which carry nDNA, and diaspores (spores, seeds), which carry both cpDNA and nDNA, making them an ideal model to compare the imprints of past climate change on the spatial genetic structures of different genomic compartments. Based on a meta-analysis of cpDNA and nDNA sequence data in western Europe, we test the hypotheses that nDNA genetic structures are similar in bryophytes and spermatophytes due to the similar size of spores and pollen grains, whereas genetic structures derived from the analysis of cpDNA are significantly stronger in spermatophytes than in bryophytes due to the substantially larger size of seeds as compared to spores. Methods Sequence data at 1-4 loci were retrieved for 11 bryophyte and 17 spermatophyte species across their entire European range. Genetic structures between and within southern and northern populations were analyzed through F and N statistics and Mantel tests. Results and discussion Gst and Nst between southern and northern Europe derived from cpDNA were significantly higher, and the proportion of significant tests was higher in spermatophytes than in bryophytes. This suggests that in the latter, migrations across mountain ranges were sufficient to maintain a homogenous allelic structure across Europe, evidencing the minor role played by mountain ranges in bryophyte migrations. With nDNA, patterns of genetic structure did not significantly differ between bryophytes and spermatophytes, in line with the hypothesis that spores and pollen grains exhibit similar dispersal capacities due to their size similarity. Stronger levels of genetic differentiation between southern and northern Europe, and within southern Europe, in spermatophytes than in bryophytes, caused by higher long-distance dispersal capacities of spores as compared to seeds, may account for the strikingly higher levels of endemism in spermatophytes than in bryophytes in the Mediterranean biodiversity hotspot.
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Affiliation(s)
- T. Fichant
- Institute of Botany, University of Liège, Liège, Belgium
| | - A. Ledent
- Institute of Botany, University of Liège, Liège, Belgium
| | - F. Collart
- Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland
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Mercado-Díaz JA, Lücking R, Moncada B, C St E Campbell K, Delnatte C, Familia L, Falcón-Hidalgo B, Motito-Marín A, Rivera-Queralta Y, Widhelm TJ, Thorsten Lumbsch H. Species assemblages of insular Caribbean Sticta (lichenized Ascomycota: Peltigerales) over ecological and evolutionary time scales. Mol Phylogenet Evol 2023:107830. [PMID: 37247703 DOI: 10.1016/j.ympev.2023.107830] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2022] [Revised: 01/28/2023] [Accepted: 05/26/2023] [Indexed: 05/31/2023]
Abstract
Phylogenetic approaches to macroevolution have provided unique insight into evolutionary relationships, ancestral ranges, and diversification patterns for many taxa. Similar frameworks have also been developed to assess how environmental and/or spatial variables shape species diversity and distribution patterns at different spatial/temporal scales, but studies implementing these are still scarce for many groups, including lichens. Here, we combine phylogeny-based ancestral range reconstruction and diversification analysis with community phylogenetics to reconstruct evolutionary origins and assess patterns of taxonomic and phylogenetic relatedness between island communities of the lichenized fungal genus Sticta in the Caribbean. Sampling was carried out in the Greater Antilles (Cuba, Jamaica, Dominican Republic, and Puerto Rico) and Lesser Antilles (Dominica, Guadeloupe, and Martinique). Data for six molecular loci were obtained for 64 candidate Caribbean species and used to perform both macroevolutionary phylogenetics, which also included worldwide taxa, and phylobetadiversity analyses, which emphasized island-level communities. Our work uncovered high levels of island endemism (∼59%) in Caribbean Sticta. We estimate initial colonization of the region occurred about 19 Mya from a South American ancestor. Reverse migration events by Caribbean lineages to South America were also inferred. We found no evidence for increased diversification rates associated with range expansion into the Caribbean. Taxonomic and phylogenetic turnover between island-level communities was most strongly correlated with environmental variation rather than with geographic distance. We observed less dissimilarity among communities from the Dominican Republic and Jamaica than between these islands and the Lesser Antilles/Puerto Rico. High levels of hidden diversity and endemism in Caribbean Sticta reaffirm that islands are crucial for the maintenance of global biodiversity of lichenized fungi. Altogether, our findings suggest that strong evolutionary links exist between Caribbean and South American biotas but at regional scales, species assemblages exhibit complex taxonomic and phylogenetic relationships that are determined by local environments and shared evolutionary histories.
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Affiliation(s)
- Joel A Mercado-Díaz
- Committee on Evolutionary Biology, University of Chicago 1025 E. 57th Street, Chicago, Illinois 60637, U.S.A; Science & Education, The Field Museum, 1400 S. Lake Shore Drive, Chicago, Illinois 60605, U.S.A.
| | - Robert Lücking
- Botanischer Garten und Botanisches Museum, Königin-Luise-Straße 6-8, 14195 Berlin, Germany.
| | - Bibiana Moncada
- Licenciatura en Biología, Universidad Distrital Francisco José de Caldas, Cra. 4 No. 26B-54, Torre de Laboratorios, Herbario, Bogotá, Colombia.
| | - Keron C St E Campbell
- Natural History Museum of Jamaica, Institute of Jamaica, 10-16 East Street, Kingston, Jamaica.
| | - Cesar Delnatte
- Biotope Amazonie, 3 rue Mezin Gildon, F-97354 Rémire-Montjoly, Guyane française.
| | - Lemuel Familia
- Departamento de Vida Silvestre, Ministerio de Medio Ambiente y Recursos Naturales, Avenida Cayetano Germosén esq. Avenida Gregorio Luperón, Ensanche El Pedregal, Santo Domingo, República Dominicana.
| | - Banessa Falcón-Hidalgo
- Jardín Botánico Nacional, Universidad de La Habana, Carretera "El Rocío" km 3.5, Calabazar, Boyeros, La Habana, Cuba.
| | - Angel Motito-Marín
- Departamento de Biología Vegetal, Centro Oriental de Ecosistemas y Biodiversidad (BioEco), Código Postal 90100, José A. Saco 601, Esquina Barnada, Santiago de Cuba, Cuba.
| | - Yoira Rivera-Queralta
- Departamento de Biología Vegetal, Centro Oriental de Ecosistemas y Biodiversidad (BioEco), Código Postal 90100, José A. Saco 601, Esquina Barnada, Santiago de Cuba, Cuba.
| | - Todd J Widhelm
- Science & Education, The Field Museum, 1400 S. Lake Shore Drive, Chicago, Illinois 60605, U.S.A.
| | - H Thorsten Lumbsch
- Science & Education, The Field Museum, 1400 S. Lake Shore Drive, Chicago, Illinois 60605, U.S.A.
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Zhang Z, Li J, Suddee S, Bouamanivong S, Averyanov LV, Gale SW. Exploring island syndromes: Variable matrix permeability in Phalaenopsis pulcherrima (Orchidaceae), a specialist lithophyte of tropical Asian inselbergs. FRONTIERS IN PLANT SCIENCE 2023; 14:1097113. [PMID: 36890904 PMCID: PMC9986494 DOI: 10.3389/fpls.2023.1097113] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/13/2022] [Accepted: 01/19/2023] [Indexed: 06/18/2023]
Abstract
INTRODUCTION Plants confined to island-like habitats are hypothesised to possess a suite of functional traits that promote on-spot persistence and recruitment, but this may come at the cost of broad-based colonising potential. Ecological functions that define this island syndrome are expected to generate a characteristic genetic signature. Here we examine genetic structuring in the orchid Phalaenopsis pulcherrima, a specialist lithophyte of tropical Asian inselbergs, both at the scale of individual outcrops and across much of its range in Indochina and on Hainan Island, to infer patterns of gene flow in the context of an exploration of island syndrome traits. METHODS We sampled 323 individuals occurring in 20 populations on 15 widely scattered inselbergs, and quantified genetic diversity, isolation-by-distance and genetic structuring using 14 microsatellite markers. To incorporate a temporal dimension, we inferred historical demography and estimated direction of gene flow using Bayesian approaches. RESULTS We uncovered high genotypic diversity, high heterozygosity and low rates of inbreeding, as well as strong evidence for the occurrence of two genetic clusters, one comprising the populations of Hainan Island and the other those of mainland Indochina. Connectivity was greater within, rather than between the two clusters, with the former unequivocally supported as ancestral. DISCUSSION Despite a strong capacity for on-spot persistence conferred by clonality, incomplete self-sterility and an ability to utilize multiple magnet species for pollination, our data reveal that P. pulcherrima also possesses traits that promote landscape-scale gene flow, including deceptive pollination and wind-borne seed dispersal, generating an ecological profile that neither fully conforms to, nor fully contradicts, a putative island syndrome. A terrestrial matrix is shown to be significantly more permeable than open water, with the direction of historic gene flow indicating that island populations can serve as refugia for postglacial colonisation of continental landmasses by effective dispersers.
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Affiliation(s)
- Zhe Zhang
- Key Laboratory of Genetics and Germplasm Innovation of Tropical Special Forest Trees and Ornamental Plants (Hainan University), Ministry of Education, College of Forestry, Hainan University, Haikou, China
- Key Laboratory of Germplasm Resources of Tropical Special Ornamental Plants of Hainan Province, College of Forestry, Hainan University, Haikou, China
| | - Jihong Li
- Flora Conservation Department, Kadoorie Farm & Botanic Garden, Tai Po, Hong Kong, China
| | - Somran Suddee
- Forest Herbarium, Department of National Parks, Wildlife and Plant Conservation, Chatuchak, Bangkok, Thailand
| | - Somsanith Bouamanivong
- Biotechnology and Ecology Institute, Ministry of Science and Technology, Vientiane, Laos
| | - Leonid V. Averyanov
- Komarov Botanical Institute, Russian Academy of Sciences, St. Petersburg, Russia
| | - Stephan W. Gale
- Flora Conservation Department, Kadoorie Farm & Botanic Garden, Tai Po, Hong Kong, China
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Yue S, Li L, Xu W, Zhao J, Ren H, Ji D, Li P, Zhang Q, Wei L, Xie Q, Pan X, Wang Z, Sun Y, Fu P. Biological and Nonbiological Sources of Fluorescent Aerosol Particles in the Urban Atmosphere. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2022; 56:7588-7597. [PMID: 35544717 DOI: 10.1021/acs.est.1c07966] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Online detection of bioaerosols based on the light-induced fluorescence (LIF) technique is still challenging due to the complexity of bioaerosols and the external/internal mixing with nonbiological fluorescent compositions. Although many lab studies have measured the fluorescence properties of the biological and nonbiological materials, there is still a scarcity of knowledge of the sources of fluorescent aerosol particles (FAP) in the ambient atmosphere. Here, we fill this gap by combining the online measurement of an LIF-based instrument (wideband integrated bioaerosol sensor, WIBS, 0.8-20 μm) with the measurements of typical biological matter and the compositions related to major nonbiological FAP from May to July in the megacity Beijing. We find that fungal spores and pollen are widely observed in all types of FAP using a WIBS. Bacteria are suggested to be associated with the fine mode FAP (excitation/emission: 280 nm/310-400 nm; 0.8-3 μm). The FL-B and -BC particles (emission in 420-650 nm) contributing the most to FAP are strongly associated with humic-like substances, dust, burning and combustion emissions, and secondary organic aerosols (SOA). This study provides a guide for interpreting individual FAP measured by LIF instruments and points to the applicability of online LIF instruments to characterize nonbiological compositions including SOA.
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Affiliation(s)
- Siyao Yue
- Institute of Surface-Earth System Science, School of Earth System Science, Tianjin University, Tianjin 300072, China
- State Key Laboratory of Atmospheric Boundary Layer Physics and Atmospheric Chemistry, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing 100029, China
| | - Linjie Li
- State Key Laboratory of Atmospheric Boundary Layer Physics and Atmospheric Chemistry, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing 100029, China
| | - Weiqi Xu
- State Key Laboratory of Atmospheric Boundary Layer Physics and Atmospheric Chemistry, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing 100029, China
| | - Jian Zhao
- State Key Laboratory of Atmospheric Boundary Layer Physics and Atmospheric Chemistry, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing 100029, China
| | - Hong Ren
- Institute of Surface-Earth System Science, School of Earth System Science, Tianjin University, Tianjin 300072, China
| | - Dongsheng Ji
- State Key Laboratory of Atmospheric Boundary Layer Physics and Atmospheric Chemistry, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing 100029, China
| | - Ping Li
- State Key Laboratory of Atmospheric Boundary Layer Physics and Atmospheric Chemistry, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing 100029, China
| | - Qiang Zhang
- Institute of Surface-Earth System Science, School of Earth System Science, Tianjin University, Tianjin 300072, China
| | - Lianfang Wei
- State Key Laboratory of Atmospheric Boundary Layer Physics and Atmospheric Chemistry, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing 100029, China
| | - Qiaorong Xie
- Institute of Surface-Earth System Science, School of Earth System Science, Tianjin University, Tianjin 300072, China
- State Key Laboratory of Atmospheric Boundary Layer Physics and Atmospheric Chemistry, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing 100029, China
| | - Xiaole Pan
- State Key Laboratory of Atmospheric Boundary Layer Physics and Atmospheric Chemistry, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing 100029, China
| | - Zifa Wang
- State Key Laboratory of Atmospheric Boundary Layer Physics and Atmospheric Chemistry, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing 100029, China
| | - Yele Sun
- State Key Laboratory of Atmospheric Boundary Layer Physics and Atmospheric Chemistry, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing 100029, China
| | - Pingqing Fu
- Institute of Surface-Earth System Science, School of Earth System Science, Tianjin University, Tianjin 300072, China
- State Key Laboratory of Atmospheric Boundary Layer Physics and Atmospheric Chemistry, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing 100029, China
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McCullough JM, Oliveros C, Benz BW, Zenil-Ferguson R, Cracraft J, Moyle RG, Andersen MJ. Wallacean and Melanesian Islands Promote Higher Rates of Diversification within the Global Passerine radiation Corvides. Syst Biol 2022; 71:1423-1439. [PMID: 35703981 DOI: 10.1093/sysbio/syac044] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2021] [Revised: 06/07/2022] [Accepted: 06/09/2022] [Indexed: 11/14/2022] Open
Abstract
The complex island archipelagoes of Wallacea and Melanesia have provided empirical data behind integral theories in evolutionary biology, including allopatric speciation and island biogeography. Yet, questions regarding the relative impact of the layered biogeographic barriers, such as deep-water trenches and isolated island systems, on faunal diversification remain underexplored. One such barrier is Wallace's Line, a significant biogeographic boundary that largely separates Australian and Asian biodiversity. To assess the relative roles of biogeographic barriers-specifically isolated island systems and Wallace's Line-we investigated the tempo and mode of diversification in a diverse avian radiation, Corvides (Crows and Jays, Birds-of-paradise, Vangas, and allies). We combined a genus-level dataset of thousands of ultraconserved elements (UCEs) and a species-level, 12-gene Sanger sequence matrix to produce a well-resolved supermatrix tree that we leveraged to explore the group's historical biogeography and effects of biogeographic barriers on their macroevolutionary dynamics. The tree is well-resolved and differs substantially from what has been used extensively for past comparative analyses within this group. We confirmed that Corvides, and its major constituent clades, arose in Australia and that a burst of dispersals west across Wallace's Line occurred after the uplift of Wallacea during the mid-Miocene. We found that dispersal across this biogeographic barrier were generally rare, though westward dispersals were two times more frequent than eastward dispersals. Wallacea's central position between Sundaland and Sahul no doubt acted as a bridge for island-hopping dispersal out of Australia, across Wallace's Line, to colonize the rest of Earth. In addition, we found that the complex island archipelagoes east of Wallace's Line harbor the highest rates of net diversification and are a substantial source of colonists to continental systems on both sides of this biogeographic barrier. Our results support emerging evidence that island systems, particularly the geologically complex archipelagoes of the Indo-pacific, are drivers of species diversification.
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Affiliation(s)
- Jenna M McCullough
- Department of Biology and Museum of Southwestern Biology, University of New Mexico, Albuquerque, NM, USA
| | - Carl Oliveros
- Department of Ecology and Evolutionary Biology and Biodiversity Institute, University of Kansas, Lawrence, KS, USA
| | - Brett W Benz
- Museum of Zoology and Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI, USA
| | | | - Joel Cracraft
- Department of Ornithology, American Museum of Natural History, New York, NY, USA
| | - Robert G Moyle
- Department of Ecology and Evolutionary Biology and Biodiversity Institute, University of Kansas, Lawrence, KS, USA
| | - Michael J Andersen
- Department of Biology and Museum of Southwestern Biology, University of New Mexico, Albuquerque, NM, USA
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Ben-Menni Schuler S, Picazo-Aragonés J, Rumsey FJ, Romero-García AT, Suárez-Santiago VN. Macaronesia Acts as a Museum of Genetic Diversity of Relict Ferns: The Case of Diplazium caudatum (Athyriaceae). PLANTS 2021; 10:plants10112425. [PMID: 34834788 PMCID: PMC8623695 DOI: 10.3390/plants10112425] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/28/2021] [Revised: 10/27/2021] [Accepted: 10/28/2021] [Indexed: 12/05/2022]
Abstract
Macaronesia has been considered a refuge region of the formerly widespread subtropical lauroid flora that lived in Southern Europe during the Tertiary. The study of relict angiosperms has shown that Macaronesian relict taxa preserve genetic variation and revealed general patterns of colonization and dispersal. However, information on the conservation of genetic diversity and range dynamics rapidly diminishes when referring to pteridophytes, despite their dominance of the herbaceous stratum in the European tropical palaeoflora. Here we aim to elucidate the pattern of genetic diversity and phylogeography of Diplazium caudatum, a hypothesized species of the Tertiary Palaeotropical flora and currently with its populations restricted across Macaronesia and disjunctly in the Sierras de Algeciras (Andalusia, southern Iberian Peninsula). We analysed 12 populations across the species range using eight microsatellite loci, sequences of a region of plastid DNA, and carry out species-distribution modelling analyses. Our dating results confirm the Tertiary origin of this species. The Macaronesian archipelagos served as a refuge during at least the Quaternary glacial cycles, where populations of D. caudatum preserved higher levels of genetic variation than mainland populations. Our data suggest the disappearance of the species in the continent and the subsequent recolonization from Macaronesia. The results of the AMOVA analysis and the indices of clonal diversity and linkage disequilibrium suggest that D. caudatum is a species in which inter-gametophytic outcrossing predominates, and that in the Andalusian populations there was a shift in mating system toward increased inbreeding and/or clonality. The model that best explains the genetic diversity distribution pattern observed in Macaronesia is, the initial and recurrent colonization between islands and archipelagos and the relatively recent diversification of restricted area lineages, probably due to the decrease of favorable habitats and competition with lineages previously established. This study extends to ferns the concept of Macaronesia archipelagos as refugia for genetic variation.
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Affiliation(s)
- Samira Ben-Menni Schuler
- Department of Botany, Faculty of Sciences, University of Granada, 18071 Granada, Spain; (S.B.-M.S.); (J.P.-A.); (A.T.R.-G.)
| | - Jesús Picazo-Aragonés
- Department of Botany, Faculty of Sciences, University of Granada, 18071 Granada, Spain; (S.B.-M.S.); (J.P.-A.); (A.T.R.-G.)
| | - Fred J. Rumsey
- Department of Life Sciences, Natural History Museum, Cromwell Road, London SW7 5BD, UK;
| | - Ana Teresa Romero-García
- Department of Botany, Faculty of Sciences, University of Granada, 18071 Granada, Spain; (S.B.-M.S.); (J.P.-A.); (A.T.R.-G.)
| | - Víctor N. Suárez-Santiago
- Department of Botany, Faculty of Sciences, University of Granada, 18071 Granada, Spain; (S.B.-M.S.); (J.P.-A.); (A.T.R.-G.)
- Correspondence: ; Tel.: +34-958-248814
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Florencio M, Patiño J, Nogué S, Traveset A, Borges PAV, Schaefer H, Amorim IR, Arnedo M, Ávila SP, Cardoso P, de Nascimento L, Fernández-Palacios JM, Gabriel SI, Gil A, Gonçalves V, Haroun R, Illera JC, López-Darias M, Martínez A, Martins GM, Neto AI, Nogales M, Oromí P, Rando JC, Raposeiro PM, Rigal F, Romeiras MM, Silva L, Valido A, Vanderpoorten A, Vasconcelos R, Santos AMC. Macaronesia as a Fruitful Arena for Ecology, Evolution, and Conservation Biology. Front Ecol Evol 2021. [DOI: 10.3389/fevo.2021.718169] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022] Open
Abstract
Research in Macaronesia has led to substantial advances in ecology, evolution and conservation biology. We review the scientific developments achieved in this region, and outline promising research avenues enhancing conservation. Some of these discoveries indicate that the Macaronesian flora and fauna are composed of rather young lineages, not Tertiary relicts, predominantly of European origin. Macaronesia also seems to be an important source region for back-colonisation of continental fringe regions on both sides of the Atlantic. This group of archipelagos (Azores, Madeira, Selvagens, Canary Islands, and Cabo Verde) has been crucial to learn about the particularities of macroecological patterns and interaction networks on islands, providing evidence for the development of the General Dynamic Model of oceanic island biogeography and subsequent updates. However, in addition to exceptionally high richness of endemic species, Macaronesia is also home to a growing number of threatened species, along with invasive alien plants and animals. Several innovative conservation and management actions are in place to protect its biodiversity from these and other drivers of global change. The Macaronesian Islands are a well-suited field of study for island ecology and evolution research, mostly due to its special geological layout with 40 islands grouped within five archipelagos differing in geological age, climate and isolation. A large amount of data is now available for several groups of organisms on and around many of these islands. However, continued efforts should be made toward compiling new information on their biodiversity, to pursue various fruitful research avenues and develop appropriate conservation management tools.
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11
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Lapiedra O, Sayol F, Garcia-Porta J, Sol D. Niche shifts after island colonization spurred adaptive diversification and speciation in a cosmopolitan bird clade. Proc Biol Sci 2021; 288:20211022. [PMID: 34465237 PMCID: PMC8437225 DOI: 10.1098/rspb.2021.1022] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2021] [Accepted: 08/05/2021] [Indexed: 01/14/2023] Open
Abstract
Islands have long been recognized as key contributors to biodiversity because they facilitate geographic isolation and ecological divergence from mainland ancestors. However, island colonization has traditionally been considered an evolutionary dead-end process, and its consequences for continental biodiversity remain understudied. Here, we use the evolutionary radiation of Columbiformes (i.e. pigeons and doves) to examine if ecological niche shifts on islands shaped biological diversification and community composition on continents. We show that the colonization of islands by continental, terrestrial-foraging lineages led to the exploitation of a new ecological niche (i.e. arboreal foraging). This transition towards arboreal foraging was associated with evolutionary adaptation towards a new morphological optimum. In addition, arboreal-foraging lineages of islands experienced an increase in speciation rates, which was associated with successful range expansions to other islands as well as back colonization of continents. Our results provide empirical evidence that diversification on continents can only be fully understood when studying the diversification processes that took place on islands, challenging the view of islands as mere sinks of evolutionary diversity.
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Affiliation(s)
| | - Ferran Sayol
- Centre for Biodiversity and Environment Research, Department of Genetics, Evolution and Environment, University College London, London, UK
| | - Joan Garcia-Porta
- Department of Biology, Washington University in St Louis, St Louis, MO, USA
| | - Daniel Sol
- CREAF, Cerdanyola del Vallès, Catalonia, Spain
- CSIC, Cerdanyola del Vallès, Catalonia, Spain
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12
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Shi M, Wang Y, Duan T, Qian X, Zeng T, Zhang D. In situ glacial survival maintains high genetic diversity of Mussaenda kwangtungensis on continental islands in subtropical China. Ecol Evol 2020; 10:11304-11321. [PMID: 33144966 PMCID: PMC7593160 DOI: 10.1002/ece3.6768] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2019] [Revised: 07/06/2020] [Accepted: 08/18/2020] [Indexed: 11/23/2022] Open
Abstract
Generally, island populations are predicted to have less genetic variation than their mainland relatives. However, a growing number of studies have nevertheless reported exceptions, indicating that the relationships were impacted by several factors, for example, historical processes. In the present study, we chose a group of subtropical islands located in South China as the study system, which are quite younger and much closer to the mainland than most of the previous studied island systems, to test the hypothesis that in situ glacial survival contributes to high levels of genetic diversity in island populations. We conducted a comparison of genetic variation between 12 island and 11 nearby mainland populations of Mussaenda kwangtungensis using eleven nuclear microsatellite and three chloroplast markers, evaluated effects of the island area and distance to mainland on genetic diversity of island populations, and simulated the potential distribution over the past by ecological niche modeling, together with the genetic data to detect the role of islands during the glacial periods. The island populations displayed comparable levels of genetic diversity and differentiation with mainland populations, overall high levels of unique polymorphisms, and the greatest values of specific within-population genetic diversity. No significant correlation was detected between genetic diversity of island populations and distance to mainland, as well as area of islands, except that allelic richness was significantly positively correlated with the area of islands. Nuclear microsatellites revealed two main clusters, largely corresponding to islands and inland populations, which divergence dated to a time of island formation by ABC analysis. Ecological niche modeling predicted a highly climatic suitability on islands during the last glacial maximum (LGM). Our results suggest that the islands have acted as refugia during the LGM and highlight the role of in situ glacial survival in maintaining high levels of genetic diversity of M. kwangtungensis in continental islands of subtropical China.
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Affiliation(s)
- Miaomiao Shi
- Key Laboratory of Plant Resources Conservation and Sustainable UtilizationSouth China Botanical GardenChinese Academy of SciencesGuangzhouChina
- Center of Conservation BiologyCore Botanical GardensChinese Academy of SciencesGuangzhouChina
| | - Yuyuan Wang
- Key Laboratory of Plant Resources Conservation and Sustainable UtilizationSouth China Botanical GardenChinese Academy of SciencesGuangzhouChina
- University of Chinese Academy of SciencesBeijingChina
| | | | - Xin Qian
- College of Life SciencesFujian Agriculture and Forestry UniversityFuzhouChina
| | - Tong Zeng
- Key Laboratory of Plant Resources Conservation and Sustainable UtilizationSouth China Botanical GardenChinese Academy of SciencesGuangzhouChina
- University of Chinese Academy of SciencesBeijingChina
| | - Dianxiang Zhang
- Key Laboratory of Plant Resources Conservation and Sustainable UtilizationSouth China Botanical GardenChinese Academy of SciencesGuangzhouChina
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13
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Rodrigues ASB, Martins A, Garcia CA, Sérgio C, Porley R, Fontinha S, González-Mancebo J, Gabriel R, Phephu N, Van Rooy J, Dirkse G, Long D, Stech M, Patiño J, Sim-Sim M. Climate-driven vicariance and long-distance dispersal explain the Rand Flora pattern in the liverwort Exormotheca pustulosa (Marchantiophyta). Biol J Linn Soc Lond 2020. [DOI: 10.1093/biolinnean/blaa071] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
Abstract
The ‘Rand flora’ is a biogeographical disjunction which refers to plant lineages occurring at the margins of the African continent and neighbouring oceanic archipelagos. Here, we tested whether the phylogeographical pattern of Exormotheca pustulosa Mitt. was the result of vicariance induced by past climatic changes or the outcome of a series of recent long-distance dispersal events. Two chloroplast markers (rps4-trnF region and psbA-trnH spacer) and one nuclear marker (ITS2) were analysed. Phylogenetic and phylogeographical relationships were inferred as well as divergence time estimates and ancestral areas. Exormotheca possibly originated in Eastern Africa during the Late Oligocene/Early Miocene while Exormotheca putulosa diversified during the Late Miocene. Three main E. pustulosa groups were found: the northern Macaronesia/Western Mediterranean, the South Africa/Saint Helena and the Cape Verde groups. The major splits among these groups occurred during the Late Miocene/Pliocene; diversification was recent, dating back to the Pleistocene. Climate-driven vicariance and subsequent long-distance dispersal events may have shaped the current disjunct distribution of E. pustulosa that corresponds to the Rand Flora pattern. Colonization of Macaronesia seems to have occurred twice by two independent lineages. The evolutionary history of E. pustulosa populations of Cape Verde warrants further study.
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Affiliation(s)
- Ana Sofia Bartolomeu Rodrigues
- cE3c – Centre for Ecology, Evolution and Environmental Changes, Natural History and Systematics (NHS) Research Group/MUHNAC – Museu Nacional de História Natural e da Ciência, Universidade de Lisboa, Rua da Escola Politécnica, Lisboa, Portugal
| | - Anabela Martins
- cE3c – Centre for Ecology, Evolution and Environmental Changes, Natural History and Systematics (NHS) Research Group/MUHNAC – Museu Nacional de História Natural e da Ciência, Universidade de Lisboa, Rua da Escola Politécnica, Lisboa, Portugal
| | - César Augusto Garcia
- cE3c – Centre for Ecology, Evolution and Environmental Changes, Natural History and Systematics (NHS) Research Group/MUHNAC – Museu Nacional de História Natural e da Ciência, Universidade de Lisboa, Rua da Escola Politécnica, Lisboa, Portugal
| | - Cecília Sérgio
- cE3c – Centre for Ecology, Evolution and Environmental Changes, Natural History and Systematics (NHS) Research Group/MUHNAC – Museu Nacional de História Natural e da Ciência, Universidade de Lisboa, Rua da Escola Politécnica, Lisboa, Portugal
| | - Ron Porley
- Cerca dos Pomares, CxP 409M, Aljezur, Portugal
| | - Susana Fontinha
- cE3c – Centre for Ecology, Evolution and Environmental Changes, Departamento de Biologia Vegetal, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, Lisboa, Portugal
- Banco de Germoplasma ISOPlexis, Universidade da Madeira, Funchal, Madeira, Portugal
| | | | - Rosalina Gabriel
- cE3c/ABG – Centre for Ecology, Evolution and Environmental Changes/Azorean Biodiversity Group and University of Azores, Angra do Heroísmo, Azores, Portugal
| | - Nonkululo Phephu
- Department of Nature Conservation, Tshwane University of Technology, Pretoria, South Africa
- School of Animal, Plant and Environmental Sciences, University of the Witwatersrand, Johannesburg, PO WITS, South Africa
| | - Jacques Van Rooy
- School of Animal, Plant and Environmental Sciences, University of the Witwatersrand, Johannesburg, PO WITS, South Africa
- National Herbarium, South African National Biodiversity Institute (SANBI), Pretoria, South Africa
| | - Gerard Dirkse
- Naturalis Biodiversity Center, RA Leiden, The Netherlands
| | | | - Michael Stech
- Naturalis Biodiversity Center, RA Leiden, The Netherlands
- Leiden University, Leiden, The Netherlands
| | - Jairo Patiño
- Plant Conservation and Biogeography Group, Departamento de Botánica, Ecología y Fisiología Vegetal, Facultad de Ciencias, Apartado 456, CP 38200, Universidad de La Laguna, La Laguna, Tenerife, Canary Islands, Spain
- Island Ecology and Evolution Research Group, Instituto de Productos Naturales & Agrobiología (IPNA-CSIC), La Laguna, Tenerife, Canary Islands, Spain
| | - Manuela Sim-Sim
- cE3c – Centre for Ecology, Evolution and Environmental Changes, Natural History and Systematics (NHS) Research Group/MUHNAC – Museu Nacional de História Natural e da Ciência, Universidade de Lisboa, Rua da Escola Politécnica, Lisboa, Portugal
- cE3c – Centre for Ecology, Evolution and Environmental Changes, Departamento de Biologia Vegetal, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, Lisboa, Portugal
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14
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Ledent A, Désamoré A, Laenen B, Mardulyn P, McDaniel SF, Zanatta F, Patiño J, Vanderpoorten A. No borders during the post-glacial assembly of European bryophytes. Ecol Lett 2019; 22:973-986. [PMID: 30900805 DOI: 10.1111/ele.13254] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2018] [Revised: 11/11/2018] [Accepted: 02/24/2019] [Indexed: 11/28/2022]
Abstract
Climatic fluctuations during the Last Glacial Maximum (LGM) exerted a profound influence on biodiversity patterns, but their impact on bryophytes, the second most diverse group of land plants, has been poorly documented. Approximate Bayesian computations based on coalescent simulations showed that the post-glacial assembly of European bryophytes involves a complex history from multiple sources. The contribution of allochthonous migrants was 95-100% of expanding populations in about half of the 15 investigated species, which is consistent with the globally balanced genetic diversities and extremely low divergence observed among biogeographical regions. Such a substantial contribution of allochthonous migrants in the post-glacial assembly of Europe is unparalleled in other plants and animals. The limited role of northern micro-refugia, which was unexpected based on bryophyte life-history traits, and of southern refugia, is consistent with recent palaeontological evidence that LGM climates in Eurasia were much colder and drier than what palaeoclimatic models predict.
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Affiliation(s)
- A Ledent
- Institute of Botany, University of Liege, Sart Tilman, 4000, Liege, Belgium
| | - A Désamoré
- Department of Ecology, Environment, and Plant Sciences, Science for Life Laboratory, Stockholm University, Stockholm, Sweden
| | - B Laenen
- Department of Ecology, Environment, and Plant Sciences, Science for Life Laboratory, Stockholm University, Stockholm, Sweden
| | - P Mardulyn
- Evolutionary Biology & Ecology, Université Libre de Bruxelles, 1050, Brussels, Belgium
| | - S F McDaniel
- Biology Department, University of Florida, Gainesville, FL, 32611, USA
| | - F Zanatta
- Institute of Botany, University of Liege, Sart Tilman, 4000, Liege, Belgium
| | - J Patiño
- Plant Conservation and Biogeography Group, Departamento de Botánica, Ecología y Fisiología Vegetal, Universidad de La Laguna, 38071, La Laguna, Spain.,Island Ecology and Evolution Research Group, Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), 38071, La Laguna, Spain
| | - A Vanderpoorten
- Institute of Botany, University of Liege, Sart Tilman, 4000, Liege, Belgium
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15
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Vigalondo B, Patiño J, Draper I, Mazimpaka V, Shevock JR, Losada-Lima A, González-Mancebo JM, Garilleti R, Lara F. The long journey of Orthotrichum shevockii (Orthotrichaceae, Bryopsida): From California to Macaronesia. PLoS One 2019; 14:e0211017. [PMID: 30759110 PMCID: PMC6373912 DOI: 10.1371/journal.pone.0211017] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2017] [Accepted: 01/07/2019] [Indexed: 11/18/2022] Open
Abstract
Biogeography, systematics and taxonomy are complementary scientific disciplines. To understand a species’ origin, migration routes, distribution and evolutionary history, it is first necessary to establish its taxonomic boundaries. Here, we use an integrative approach that takes advantage of complementary disciplines to resolve an intriguing scientific question. Populations of an unknown moss found in the Canary Islands (Tenerife Island) resembled two different Californian endemic species: Orthotrichum shevockii and O. kellmanii. To determine whether this moss belongs to either of these species and, if so, to explain its presence on this distant oceanic island, we combined the evaluation of morphological qualitative characters, statistical morphometric analyses of quantitative traits, and molecular phylogenetic inferences. Our results suggest that the two Californian mosses are conspecific, and that the Canarian populations belong to this putative species, with only one taxon thus involved. Orthotrichum shevockii (the priority name) is therefore recognized as a morphologically variable species that exhibits a transcontinental disjunction between western North America and the Canary Islands. Within its distribution range, the area of occupancy is limited, a notable feature among bryophytes at the intraspecific level. To explain this disjunction, divergence time and ancestral area estimation analyses are carried out and further support the hypothesis of a long-distance dispersal event from California to Tenerife Island.
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Affiliation(s)
- Beatriz Vigalondo
- Departamento de Biología (Botánica), Facultad de Ciencias, Universidad Autónoma de Madrid, Madrid, Spain
- * E-mail:
| | - Jairo Patiño
- Departamento de Botánica, Ecología y Fisiología Vegetal, Universidad de La Laguna, La Laguna, Santa Cruz de Tenerife, Spain
- Island Ecology and Evolution Research Group, Instituto de Productos Naturales y Agrobiología (IPNA-CSIC), La Laguna, Tenerife, Spain
- Department of Environmental Science, Policy and Management, University of California, Berkeley, CA, United States of America
| | - Isabel Draper
- Departamento de Biología (Botánica), Facultad de Ciencias, Universidad Autónoma de Madrid, Madrid, Spain
| | - Vicente Mazimpaka
- Departamento de Biología (Botánica), Facultad de Ciencias, Universidad Autónoma de Madrid, Madrid, Spain
| | - James R. Shevock
- Department of Botany, California Academy of Sciences, San Francisco, CA, United States of America
| | - Ana Losada-Lima
- Departamento de Botánica, Ecología y Fisiología Vegetal, Universidad de La Laguna, La Laguna, Santa Cruz de Tenerife, Spain
| | - Juana M. González-Mancebo
- Departamento de Botánica, Ecología y Fisiología Vegetal, Universidad de La Laguna, La Laguna, Santa Cruz de Tenerife, Spain
| | - Ricardo Garilleti
- Departamento de Botánica y Geología, Facultad de Farmacia, Universidad de Valencia, Valencia, Spain
| | - Francisco Lara
- Departamento de Biología (Botánica), Facultad de Ciencias, Universidad Autónoma de Madrid, Madrid, Spain
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16
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Cradles and museums of Antarctic teleost biodiversity. Nat Ecol Evol 2017; 1:1379-1384. [DOI: 10.1038/s41559-017-0239-y] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2017] [Accepted: 06/15/2017] [Indexed: 11/08/2022]
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17
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Dias EF, Moura M, Schaefer H, Silva L. Geographical distance and barriers explain population genetic patterns in an endangered island perennial. AOB PLANTS 2017; 8:plw072. [PMID: 27742648 PMCID: PMC5206333 DOI: 10.1093/aobpla/plw072] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/08/2016] [Accepted: 10/02/2016] [Indexed: 05/14/2023]
Abstract
Island plants are frequently used as model systems in evolutionary biology to understand factors that might explain genetic diversity and population differentiation levels. Theory suggests that island plants should have lower levels of genetic diversity than their continental relatives, but this hypothesis has been rejected in several recent studies. In the Azores, the population level genetic diversity is generally low. However, like in most island systems, there are high levels of genetic differentiation between different islands. The Azores lettuce, Lactuca watsoniana, is an endangered Asteraceae with small population sizes. Therefore, we expect to find a lower level of genetic diversity than in the other more common endemic Asteraceae. The intra- and interpopulation genetic structure and diversity of L. watsoniana was assessed using eight newly developed microsatellite markers. We included 135 individuals, from all 13 known populations in the study. Because our microsatellite results suggested that the species is tetraploid, we analysed the microsatellite data (i) in codominant format using PolySat (Principal Coordinate Analysis, PCoA) and SPAgedi (genetic diversity indexes) and (ii) in dominant format using Arlequin (AMOVA) and STRUCTURE (Bayesian genetic cluster analysis). A total of 129 alleles were found for all L. watsoniana populations. In contrast to our expectations, we found a high level of intrapopulation genetic diversity (total heterozigosity = 0.85; total multilocus average proportion of private alleles per population = 26.5 %, Fis = -0.19). Our results show the existence of five well-defined genetic groups, one for each of the three islands São Miguel, Terceira and Faial, plus two groups for the East and West side of Pico Island (Fst = 0.45). The study revealed the existence of high levels of genetic diversity, which should be interpreted taking into consideration the ploidy level of this rare taxon.
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Affiliation(s)
- Elisabete F Dias
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Pólo dos Açores, Universidade dos Açores, Rua da Mãe de Deus, Apartado 1422, Ponta Delgada, 9501-801 Açores, Portugal
| | - M Moura
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Pólo dos Açores, Universidade dos Açores, Rua da Mãe de Deus, Apartado 1422, Ponta Delgada, 9501-801 Açores, Portugal
| | - H Schaefer
- Plant Biodiversity Research, Technische Universität München, 85354 Freising, Germany
| | - Luís Silva
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Pólo dos Açores, Universidade dos Açores, Rua da Mãe de Deus, Apartado 1422, Ponta Delgada, 9501-801 Açores, Portugal
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18
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Climate threat on the Macaronesian endemic bryophyte flora. Sci Rep 2016; 6:29156. [PMID: 27377592 PMCID: PMC4932530 DOI: 10.1038/srep29156] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2016] [Accepted: 06/15/2016] [Indexed: 11/09/2022] Open
Abstract
Oceanic islands are of fundamental importance for the conservation of biodiversity because they exhibit high endemism rates coupled with fast extinction rates. Nowhere in Europe is this pattern more conspicuous than in the Macaronesian biogeographic region. A large network of protected areas within the region has been developed, but the question of whether these areas will still be climatically suitable for the globally threatened endemic element in the coming decades remains open. Here, we make predictions on the fate of the Macaronesian endemic bryophyte flora in the context of ongoing climate change. The potential distribution of 35 Macaronesian endemic bryophyte species was assessed under present and future climate conditions using an ensemble modelling approach. Projections of the models under different climate change scenarios predicted an average decrease of suitable areas of 62-87% per species and a significant elevational increase by 2070, so that even the commonest species were predicted to fit either the Vulnerable or Endangered IUCN categories. Complete extinctions were foreseen for six of the studied Macaronesian endemic species. Given the uncertainty regarding the capacity of endemic species to track areas of suitable climate within and outside the islands, active management associated to an effective monitoring program is suggested.
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19
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Condamine FL, Leslie AB, Antonelli A. Ancient islands acted as refugia and pumps for conifer diversity. Cladistics 2016; 33:69-92. [DOI: 10.1111/cla.12155] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/27/2016] [Indexed: 01/19/2023] Open
Affiliation(s)
- Fabien L. Condamine
- Department of Biological and Environmental Sciences; University of Gothenburg; Box 461 SE-405 30 Göteborg Sweden
- Department of Biological Sciences; University of Alberta; Edmonton T6G 2E9 AB Canada
- CNRS, UMR 5554 Institut des Sciences de l'Evolution, Université de Montpellier; Place Eugène Bataillon 34095 Montpellier France
| | - Andrew B. Leslie
- Department of Ecology and Evolutionary Biology; Brown University; Providence RI 02912 USA
| | - Alexandre Antonelli
- Department of Biological and Environmental Sciences; University of Gothenburg; Box 461 SE-405 30 Göteborg Sweden
- Gothenburg Botanical Garden; Carl Skottsbergs gata 22A 413 19 Gothenburg Sweden
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20
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Patiño J, Goffinet B, Sim-Sim M, Vanderpoorten A. Is the sword moss (Bryoxiphium) a preglacial Tertiary relict? Mol Phylogenet Evol 2015; 96:200-206. [PMID: 26708122 DOI: 10.1016/j.ympev.2015.12.004] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2015] [Revised: 12/01/2015] [Accepted: 12/11/2015] [Indexed: 12/15/2022]
Abstract
The disjunction of floras between East Asia, Southeast North America, West North America, and Southwest Eurasia has been interpreted in terms of the fragmentation of a once continuous mixed mesophytic forest that occurred throughout the Northern Hemisphere due to the climatic and geological changes during the late Tertiary. The sword moss, Bryoxiphium, exhibits a distribution that strikingly resembles that of the mesophytic forest elements such as Liriodendron and is considered as the only living member of an early Tertiary flora in Iceland. These hypotheses are tested here using molecular dating analyses and ancestral area estimations. The results suggest that the extant range of Bryoxiphium results from the fragmentation of a formerly wider range encompassing North America and Southeast Asia about 10 million years ago. The split of continental ancestral populations is too recent to match with a continental drift scenario but is spatially and temporally remarkably congruent with that observed in Tertiary angiosperm relict species. The timing of the colonization of Iceland from Macaronesian ancestors, about two million years ago, is, however, incompatible with the hypothesis that Bryoxiphium is the only living member of an early Tertiary flora of the island. Alaska was recurrently colonized from East Asia. The ability of Bryoxiphium to overcome large oceanic barriers is further evidenced by its occurrence on remote oceanic archipelagos. In particular, Madeira was colonized twice independently from American and East Asian ancestors, respectively. The striking range disjunction of Bryoxiphium is interpreted in terms of its mating system, as the taxon exhibits a very singular pattern of spatial segregation of the sexes.
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Affiliation(s)
- Jairo Patiño
- University of Liege, Institute of Botany, B22 Sart Tilman, Liege, Belgium; cE3c - Centre for Ecology, Evolution and Environmental Changes and Platform for Enhancing Ecological Research & Sustainability, Universidade dos Açores, Angra do Heroísmo, Terceira, Açores, Portugal; Department of Plant Biology, University of La Laguna, Tenerife, Spain.
| | - Bernard Goffinet
- University of Connecticut, Department of Ecology and Evolutionary Biology, Storrs, CT, USA
| | - Manuela Sim-Sim
- cE3c, Centre for Ecology, Evolution and Environmental Changes, Universidade de Lisboa, Faculdade de Ciências de Lisboa, Departamento de Biologia Vegetal and Museu Nacional de História Natural e da Ciência, Jardim Botânico, Lisboa, Portugal
| | - Alain Vanderpoorten
- University of Liege, Institute of Botany, B22 Sart Tilman, Liege, Belgium; cE3c - Centre for Ecology, Evolution and Environmental Changes and Platform for Enhancing Ecological Research & Sustainability, Universidade dos Açores, Angra do Heroísmo, Terceira, Açores, Portugal
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21
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Pisa S, Vanderpoorten A, Patiño J, Werner O, González-Mancebo JM, Ros RM. How to define nativeness in vagile organisms: lessons from the cosmopolitan moss Bryum argenteum on the island of Tenerife (Canary Islands). PLANT BIOLOGY (STUTTGART, GERMANY) 2015; 17:1057-1065. [PMID: 25980839 DOI: 10.1111/plb.12348] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/16/2015] [Accepted: 05/13/2015] [Indexed: 06/04/2023]
Abstract
The distinction between native and introduced biotas presents unique challenges that culminate in organisms with high long-distance dispersal capacities in a rapidly changing world. Bryophytes, in particular, exhibit large distribution ranges, and some species can truly be qualified as cosmopolitan. Cosmopolitan species, however, typically occur in disturbed environments, raising the question of their nativeness throughout their range. Here, we employ genetic data to address the question of the origin of the cosmopolitan, weedy moss Bryum argenteum on the island of Tenerife. The genetic diversity of B. argenteum on Tenerife was comparable to that found in continental areas due to recurrent colonisation events, erasing any signature of a bottleneck that would be expected in the case of a recent colonisation event. The molecular dating analyses indicated that the first colonisation of the island took place more than 100,000 years ago, i.e. well before the first human settlements. Furthermore, the significant signal for isolation-by-distance found in B. argenteum within Tenerife points to the substantial role of genetic drift in establishing the observed patterns of genetic variation. Together, the results support the hypothesis that B. argenteum is native on Tenerife; although the existence of haplotypes shared between Tenerife and continental areas suggests that more recent, potentially man-mediated introduction also took place. While defining nativeness in organisms that are not deliberately introduced, and wherein the fossil record is extremely scarce, is an exceedingly challenging task, our results suggest that population genetic analyses can represent a useful tool to help distinguish native from alien populations.
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Affiliation(s)
- S Pisa
- Departamento de Biología Vegetal, Universidad de Murcia, Murcia, Spain
| | | | - J Patiño
- Institute of Botany, University of Liège, Liège, Belgium
- Departamento de Biología Vegetal, Universidad de La Laguna, Tenerife, Spain
| | - O Werner
- Departamento de Biología Vegetal, Universidad de Murcia, Murcia, Spain
| | | | - R M Ros
- Departamento de Biología Vegetal, Universidad de Murcia, Murcia, Spain
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Ortiz-Álvarez R, de los Ríos A, Fernández-Mendoza F, Torralba-Burrial A, Pérez-Ortega S. Ecological Specialization of Two Photobiont-Specific Maritime Cyanolichen Species of the Genus Lichina. PLoS One 2015; 10:e0132718. [PMID: 26181436 PMCID: PMC4504470 DOI: 10.1371/journal.pone.0132718] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2015] [Accepted: 06/17/2015] [Indexed: 11/18/2022] Open
Abstract
All fungi in the class Lichinomycetes are lichen-forming and exclusively associate with cyanobacteria. Two closely related maritime species of the genus Lichina (L. confinis and L. pygmaea) show similar distribution ranges in the Northeast Atlantic, commonly co-occurring at the same rocky shores but occupying different littoral zones. By means of 16S rRNA and phycocyanin operon markers we studied a) the phylogenetic relationships of cyanobionts associated with these species, b) the match of divergence times between both symbionts, and c) whether Lichina species differ in photobiont association and in how geography and ecology affect selectivity. The cyanobionts studied are closely related to both marine and freshwater strains of the genus Rivularia. We found evidence of a high specificity to particular cyanobiont lineages in both species: Lichina pygmaea and L. confinis incorporate specific lineages of Rivularia that do not overlap at the haplotype nor the OTU levels. Dating divergences of the fungal and cyanobacterial partners revealed an asynchronous origin of both lineages. Within each fungal species, selectivity varied across the studied area, influenced by environmental conditions (both atmospheric and marine), although patterns were highly correlated between both lichen taxa. Ecological speciation due to the differential association of photobionts to each littoral zone is suspected to have occurred in marine Lichina.
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Affiliation(s)
- Rüdiger Ortiz-Álvarez
- Integrative Freshwater Ecology Group, Center of Advanced Studies of Blanes, Spanish Council for Research (CEAB-CSIC), Blanes, Girona, Spain
| | - Asunción de los Ríos
- Department of Biogeochemistry and Microbial Ecology, Museo Nacional de Ciencias Naturales (MNCN-CSIC), Madrid, Spain
| | | | | | - Sergio Pérez-Ortega
- Department of Biogeochemistry and Microbial Ecology, Museo Nacional de Ciencias Naturales (MNCN-CSIC), Madrid, Spain
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Núñez-Zapata J, Cubas P, Hawksworth DL, Crespo A. Biogeography and Genetic Structure in Populations of a Widespread Lichen (Parmelina tiliacea, Parmeliaceae, Ascomycota). PLoS One 2015; 10:e0126981. [PMID: 25961726 PMCID: PMC4427293 DOI: 10.1371/journal.pone.0126981] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2015] [Accepted: 04/09/2015] [Indexed: 11/18/2022] Open
Abstract
The genetic diversity and population structure of the foliose lichenized fungus Parmelina tiliacea has been analyzed through its geographical range, including samples from Macaronesia (Canary Islands), the Mediterranean, and Eurosiberia. DNA sequences from the nuclear ribosomal internal transcribed spacer, the mitochondrial large subunit ribosomal RNA gene, and the translation elongation factor 1-α were used as molecular markers. The haplotypes of the three markers and the molecular variance analyses of multilocus haplotypes showed the highest diversity in the Canary Islands, while restricted haplotypes occurred at high frequencies in Mediterranean coastal samples. The multilocus haplotypes formed three unevenly distributed clusters (clusters 1-3). In the Canary Islands all the haplotypes were present in a similar proportion, while the coastal Mediterranean sites had almost exclusively haplotypes of cluster 3; cluster 2 predominated in inland Mediterranean sites; and cluster 1 was more abundant in central and northern Europe (Eurosiberian area). The distribution of clusters is partially explained by climatic factors, and its interaction with local spatial structure, but much of the variation remains unexplained. The high frequency of individuals in the Canary Islands with haplotypes shared with other areas suggests that could be a refugium of genetic diversity, and the high frequency of individuals of the Mediterranean coastal sites with restricted haplotypes indicates that gene flow to contiguous areas may be restricted. This is significant for the selection of areas for conservation purposes, as those with most genetic variation may reflect historical factors and biological properties of the species.
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Affiliation(s)
- Jano Núñez-Zapata
- Departamento de Biología Vegetal II, Facultad de Farmacia, Universidad Complutense de Madrid, Madrid, Spain
| | - Paloma Cubas
- Departamento de Biología Vegetal II, Facultad de Farmacia, Universidad Complutense de Madrid, Madrid, Spain
- * E-mail:
| | - David L. Hawksworth
- Departamento de Biología Vegetal II, Facultad de Farmacia, Universidad Complutense de Madrid, Madrid, Spain
| | - Ana Crespo
- Departamento de Biología Vegetal II, Facultad de Farmacia, Universidad Complutense de Madrid, Madrid, Spain
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Patiño J, Carine M, Mardulyn P, Devos N, Mateo RG, González-Mancebo JM, Shaw AJ, Vanderpoorten A. Approximate Bayesian Computation Reveals the Crucial Role of Oceanic Islands for the Assembly of Continental Biodiversity. Syst Biol 2015; 64:579-89. [DOI: 10.1093/sysbio/syv013] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2014] [Accepted: 02/14/2015] [Indexed: 11/13/2022] Open
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Andersen MJ, Shult HT, Cibois A, Thibault JC, Filardi CE, Moyle RG. Rapid diversification and secondary sympatry in Australo-Pacific kingfishers (Aves: Alcedinidae: Todiramphus). ROYAL SOCIETY OPEN SCIENCE 2015; 2:140375. [PMID: 26064600 PMCID: PMC4448819 DOI: 10.1098/rsos.140375] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2014] [Accepted: 01/06/2015] [Indexed: 05/05/2023]
Abstract
Todiramphus chloris is the most widely distributed of the Pacific's 'great speciators'. Its 50 subspecies constitute a species complex that is distributed over 16 000 km from the Red Sea to Polynesia. We present, to our knowledge, the first comprehensive molecular phylogeny of this enigmatic radiation of kingfishers. Ten Pacific Todiramphus species are embedded within the T. chloris complex, rendering it paraphyletic. Among these is a radiation of five species from the remote islands of Eastern Polynesian, as well as the widespread migratory taxon, Todiramphus sanctus. Our results offer strong support that Pacific Todiramphus, including T. chloris, underwent an extensive range expansion and diversification less than 1 Ma. Multiple instances of secondary sympatry have accumulated in this group, despite its recent origin, including on Australia and oceanic islands in Palau, Vanuatu and the Solomon Islands. Significant ecomorphological and behavioural differences exist between secondarily sympatric lineages, which suggest that pre-mating isolating mechanisms were achieved rapidly during diversification. We found evidence for complex biogeographic patterns, including a novel phylogeographic break in the eastern Solomon Islands that separates a Northern Melanesian clade from Polynesian taxa. In light of our results, we discuss systematic relationships of Todiramphus and propose an updated taxonomy. This paper contributes to our understanding of avian diversification and assembly on islands, and to the systematics of a classically polytypic species complex.
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Affiliation(s)
- Michael J. Andersen
- Department of Ecology and Evolutionary Biology and Biodiversity Institute, University of Kansas, Lawrence, KS 66045, USA
- Author for correspondence: Michael J. Andersen e-mail:
| | - Hannah T. Shult
- Department of Ecology and Evolutionary Biology and Biodiversity Institute, University of Kansas, Lawrence, KS 66045, USA
| | - Alice Cibois
- Natural History Museum of Geneva, Department of Mammalogy and Ornithology, CP 6434, CH-1211 Geneva 6, 6434, Switzerland
| | - Jean-Claude Thibault
- Muséum National d'Histoire Naturelle, Département Systématique et Evolution, UMR7205, Case Postale 51, 55 Rue Buffon, 75005 Paris, France
| | - Christopher E. Filardi
- American Museum of Natural History, Center for Biodiversity and Conservation, Central Park West at 79th Street, New York, NY 10024, USA
| | - Robert G. Moyle
- Department of Ecology and Evolutionary Biology and Biodiversity Institute, University of Kansas, Lawrence, KS 66045, USA
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Hassel K, Johnsen JI, Jordal JB, Knutsen A. Porella obtusata: distribution, ecology and threats at the west coast of Norway, the northern fringe of its European distribution. LINDBERGIA 2015. [DOI: 10.25227/linbg.01068] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022] Open
Affiliation(s)
- Kristian Hassel
- K. Hassel , Univ. Museum, The Natural History Dept, Norwegian Univ. of Science and Technology, NO-7491 Trondheim, Norway
| | - John Inge Johnsen
- J. I. Johnsen, Fylkesmannen i Rogaland, Box 59, NO-4001 Stavanger, Norway
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Aranda SC, Gabriel R, Borges PAV, Santos AMC, de Azevedo EB, Patiño J, Hortal J, Lobo JM. Geographical, temporal and environmental determinants of bryophyte species richness in the Macaronesian islands. PLoS One 2014; 9:e101786. [PMID: 25003186 PMCID: PMC4086965 DOI: 10.1371/journal.pone.0101786] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2014] [Accepted: 06/11/2014] [Indexed: 11/18/2022] Open
Abstract
Species richness on oceanic islands has been related to a series of ecological factors including island size and isolation (i.e. the Equilibrium Model of Island Biogeography, EMIB), habitat diversity, climate (i.e., temperature and precipitation) and more recently island ontogeny (i.e. the General Dynamic Model of oceanic island biogeography, GDM). Here we evaluate the relationship of these factors with the diversity of bryophytes in the Macaronesian region (Azores, Madeira, Canary Islands and Cape Verde). The predictive power of EMIB, habitat diversity, climate and the GDM on total bryophyte richness, as well as moss and liverwort richness (the two dominant bryophyte groups), was evaluated through ordinary least squares regressions. After choosing the best subset of variables using inference statistics, we used partial regression analyses to identify the independent and shared effects of each model. The variables included within each model were similar for mosses and liverworts, with orographic mist layer being one of the most important predictors of richness. Models combining climate with either the GDM or habitat diversity explained most of richness variation (up to 91%). There was a high portion of shared variance between all pairwise combinations of factors in mosses, while in liverworts around half of the variability in species richness was accounted for exclusively by climate. Our results suggest that the effects of climate and habitat are strong and prevalent in this region, while geographical factors have limited influence on Macaronesian bryophyte diversity. Although climate is of great importance for liverwort richness, in mosses its effect is similar to or, at least, indiscernible from the effect of habitat diversity and, strikingly, the effect of island ontogeny. These results indicate that for highly vagile taxa on oceanic islands, the dispersal process may be less important for successful colonization than the availability of suitable ecological conditions during the establishment phase.
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Affiliation(s)
- Silvia C. Aranda
- Departamento de Biogeografía y Cambio Global, Museo Nacional de Ciencias Naturales, Madrid, Spain
- Azorean Biodiversity Group and Platform for Enhancing Ecological Research & Sustainability, Departamento de Ciências Agrárias, Universidade dos Açores, Angra do Heroísmo, Açores, Portugal
- * E-mail:
| | - Rosalina Gabriel
- Azorean Biodiversity Group and Platform for Enhancing Ecological Research & Sustainability, Departamento de Ciências Agrárias, Universidade dos Açores, Angra do Heroísmo, Açores, Portugal
| | - Paulo A. V. Borges
- Azorean Biodiversity Group and Platform for Enhancing Ecological Research & Sustainability, Departamento de Ciências Agrárias, Universidade dos Açores, Angra do Heroísmo, Açores, Portugal
| | - Ana M. C. Santos
- Departamento de Biogeografía y Cambio Global, Museo Nacional de Ciencias Naturales, Madrid, Spain
- Azorean Biodiversity Group and Platform for Enhancing Ecological Research & Sustainability, Departamento de Ciências Agrárias, Universidade dos Açores, Angra do Heroísmo, Açores, Portugal
- Centro de Biologia Ambiental and Platform for Enhancing Ecological Research & Sustainability, Faculdade de Ciências de Lisboa, Universidade de Lisboa, Lisbon, Portugal
| | - Eduardo Brito de Azevedo
- Centro do Clima, Meteorologia e Mudanças Globais, Departamento de Ciências Agrárias, Universidade dos Açores, Angra do Heroísmo, Açores, Portugal
| | - Jairo Patiño
- Azorean Biodiversity Group and Platform for Enhancing Ecological Research & Sustainability, Departamento de Ciências Agrárias, Universidade dos Açores, Angra do Heroísmo, Açores, Portugal
- Institute of Botany, University of Liège, Liège, Belgium
- Departmento de Biología Vegetal, Universidad de La Laguna, Tenerife, Spain
| | - Joaquín Hortal
- Departamento de Biogeografía y Cambio Global, Museo Nacional de Ciencias Naturales, Madrid, Spain
- Centro de Biologia Ambiental and Platform for Enhancing Ecological Research & Sustainability, Faculdade de Ciências de Lisboa, Universidade de Lisboa, Lisbon, Portugal
| | - Jorge M. Lobo
- Departamento de Biogeografía y Cambio Global, Museo Nacional de Ciencias Naturales, Madrid, Spain
- Azorean Biodiversity Group and Platform for Enhancing Ecological Research & Sustainability, Departamento de Ciências Agrárias, Universidade dos Açores, Angra do Heroísmo, Açores, Portugal
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Bateman RM, Rudall PJ, Bidartondo MI, Cozzolino S, Tranchida-Lombardo V, Carine MA, Moura M. Speciation via floral heterochrony and presumed mycorrhizal host switching of endemic butterfly orchids on the Azorean archipelago. AMERICAN JOURNAL OF BOTANY 2014; 101:979-1001. [PMID: 24907253 DOI: 10.3732/ajb.1300430] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
• Premise of the study: Most orchid species native to the Macaronesian islands reflect immigration from western Europe or North Africa followed by anagenesis. The only putative exception is the butterfly orchids (Platanthera) of the Azores, where three species apparently reflect at least one cladogenetic speciation event. This multidisciplinary study explores the origin, speciation, phenotypic, and genotypic cohesion of these Azorean species and their mainland relatives.• Methods: Plants of Platanthera from 30 localities spanning all nine Azorean islands were compared with those of four continental European relatives for 38 morphometric characters; substantial subsets were also analyzed for plastid microsatellites, and for nrITS of both the orchids and their mycorrhizae.• Key results: Although the three Azorean and four mainland species are all readily distinguished morphometrically using several floral characters, and hybridization appears rare, divergence in ITS and especially plastid sequences is small. Despite occupying similar laurisilva habitats, the Azorean species differ radically in the identities and diversity of their mycorrhizal partners; specialism apparently increases rarity.• Conclusions: Although morphological evidence suggests two invasions of the islands from NW Africa and/or SW Europe, ITS data imply only one. As the molecular data are unable to distinguish among the potential mainland ancestors, two scenarios of relationship are explored that imply different ancestors. Both scenarios require both anagenetic and cladogenetic speciation events, involving homoplastic shifts in overall flower size and (often substantial) changes in the relative dimensions of individual floral organs. Limited genotypic divergence among the three species compared with greater phenotypic divergence suggests comparatively recent speciation. Mycorrhizae may be the most critical factor dictating the respective ecological tolerances, and thus the relative frequencies, of these species. The recent IUCN Red-List amalgamation of Azorean Platanthera taxa into a single species urgently requires reappraisal, as P. micrantha is an excellent indicator species of seminatural laurisilva forest and P. azorica is arguably Europe's rarest orchid.
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Affiliation(s)
| | - Paula J Rudall
- Royal Botanic Gardens Kew, Richmond, Surrey, TW9 3AB, UK
| | - Martin I Bidartondo
- Royal Botanic Gardens Kew, Richmond, Surrey, TW9 3AB, UK Imperial College London, London, SW7 2AZ, UK
| | - Salvatore Cozzolino
- Department of Biology, University Federico II of Naples, Naples, I-80126, Italy
| | | | - Mark A Carine
- Department of Life Sciences, Natural History Museum, Cromwell Road, London, SW7 5BD, UK
| | - Mónica Moura
- CIBIO Research Center in Biodiversity and Genetic Resources-Azores, Department of Biology, University of the Azores, Rua Mae de Deus 58, Apartado 1422, 9501-801 Ponta Delgada, Portugal
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Kyrkjeeide MO, Stenøien HK, Flatberg KI, Hassel K. Glacial refugia and post-glacial colonization patterns in European bryophytes. LINDBERGIA 2014. [DOI: 10.25227/linbg.01046] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022] Open
Affiliation(s)
- Magni Olsen Kyrkjeeide
- M. O. Kyrkjeeide , H. K. Stenøien, K. I. Flatberg and K. Hassel, NTNU Univ. Museum, Norwegian Univ. of Science and Technology, NO-7491 Trondheim, Norway
| | - Hans K. Stenøien
- M. O. Kyrkjeeide , H. K. Stenøien, K. I. Flatberg and K. Hassel, NTNU Univ. Museum, Norwegian Univ. of Science and Technology, NO-7491 Trondheim, Norway
| | - Kjell I. Flatberg
- M. O. Kyrkjeeide , H. K. Stenøien, K. I. Flatberg and K. Hassel, NTNU Univ. Museum, Norwegian Univ. of Science and Technology, NO-7491 Trondheim, Norway
| | - Kristian Hassel
- M. O. Kyrkjeeide , H. K. Stenøien, K. I. Flatberg and K. Hassel, NTNU Univ. Museum, Norwegian Univ. of Science and Technology, NO-7491 Trondheim, Norway
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Patiño J, Carine M, Fernández-Palacios JM, Otto R, Schaefer H, Vanderpoorten A. The anagenetic world of spore-producing land plants. THE NEW PHYTOLOGIST 2014; 201:305-311. [PMID: 24010958 DOI: 10.1111/nph.12480] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2013] [Accepted: 07/30/2013] [Indexed: 06/02/2023]
Abstract
A fundamental challenge to our understanding of biodiversity is to explain why some groups of species diversify, whereas others do not. On islands, the gradual evolution of a new species from a founder event has been called 'anagenetic speciation'. This process does not lead to rapid and extensive speciation within lineages and has received little attention. Based on a survey of the endemic bryophyte, pteridophyte and spermatophyte floras of nine oceanic archipelagos, we show that anagenesis, as measured by the proportion of genera with single endemic species within a genus, is much higher in bryophytes (73%) and pteridophytes (65%) than in spermatophytes (55%). Anagenesis contributed 49% of bryophyte and 40% of endemic pteridophyte species, but only 17% of spermatophytes. The vast majority of endemic bryophytes and pteridophytes are restricted to subtropical evergreen laurel forests and failed to diversify in more open environments, in contrast with the pattern exhibited by spermatophytes. We propose that the dominance of anagenesis in island bryophytes and pteridophytes is a result of a mixture of intrinsic factors, notably their strong preference for (sub)tropical forest environments, and extrinsic factors, including the long-term macro-ecological stability of these habitats and the associated strong phylogenetic niche conservatism of their floras.
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Affiliation(s)
- Jairo Patiño
- Institute of Botany, University of Liège, 4000, Liège, Belgium
- Departmento de Ciências Agrárias, Azorean Biodiversity Group (CITA-A) and Platform for Enhancing Ecological Research & Sustainability (PEERS), Universidade dos Açores, 9700-042 Angra do Heroísmo, Terceira, Açores, Portugal
- Departmento de Biología Vegetal, Universidad de La Laguna, 38206, Tenerife, Spain
| | - Mark Carine
- Department of Life Sciences, The Natural History Museum, London, SW7 5BD, UK
| | | | - Rüdiger Otto
- Departamento de Ecología, Facultad de Biología, Universidad de La Laguna, 38206, Tenerife, Spain
| | - Hanno Schaefer
- Technische Universitaet Muenchen, Plant Biodiversity Research, Maximus-von-Imhof Forum 2, 85354, Freising, Germany
| | - Alain Vanderpoorten
- Institute of Botany, University of Liège, 4000, Liège, Belgium
- Departmento de Ciências Agrárias, Azorean Biodiversity Group (CITA-A) and Platform for Enhancing Ecological Research & Sustainability (PEERS), Universidade dos Açores, 9700-042 Angra do Heroísmo, Terceira, Açores, Portugal
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Return flight to the Canary Islands – The key role of peripheral populations of Afrocanarian blue tits (Aves: Cyanistes teneriffae) in multi-gene reconstructions of colonization pathways. Mol Phylogenet Evol 2013; 67:458-67. [DOI: 10.1016/j.ympev.2013.02.010] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2012] [Revised: 02/04/2013] [Accepted: 02/11/2013] [Indexed: 11/18/2022]
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Modeling species distributions from heterogeneous data for the biogeographic regionalization of the European bryophyte flora. PLoS One 2013; 8:e55648. [PMID: 23409015 PMCID: PMC3569459 DOI: 10.1371/journal.pone.0055648] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2012] [Accepted: 12/28/2012] [Indexed: 11/19/2022] Open
Abstract
The definition of biogeographic regions provides a fundamental framework for a range of basic and applied questions in biogeography, evolutionary biology, systematics and conservation. Previous research suggested that environmental forcing results in highly congruent regionalization patterns across taxa, but that the size and number of regions depends on the dispersal ability of the taxa considered. We produced a biogeographic regionalization of European bryophytes and hypothesized that (1) regions defined for bryophytes would differ from those defined for other taxa due to the highly specific eco-physiology of the group and (2) their high dispersal ability would result in the resolution of few, large regions. Species distributions were recorded using 10,000 km2 MGRS pixels. Because of the lack of data across large portions of the area, species distribution models employing macroclimatic variables as predictors were used to determine the potential composition of empty pixels. K-means clustering analyses of the pixels based on their potential species composition were employed to define biogeographic regions. The optimal number of regions was determined by v-fold cross-validation and Moran's I statistic. The spatial congruence of the regions identified from their potential bryophyte assemblages with large-scale vegetation patterns is at odds with our primary hypothesis. This reinforces the notion that post-glacial migration patterns might have been much more similar in bryophytes and vascular plants than previously thought. The substantially lower optimal number of clusters and the absence of nested patterns within the main biogeographic regions, as compared to identical analyses in vascular plants, support our second hypothesis. The modelling approach implemented here is, however, based on many assumptions that are discussed but can only be tested when additional data on species distributions become available, highlighting the substantial importance of developing integrated mapping projects for all taxa in key biogeographically areas of Europe, and the Mediterranean peninsulas in particular.
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García-Verdugo C, Calleja JA, Vargas P, Silva L, Moreira O, Pulido F. Polyploidy and microsatellite variation in the relict tree Prunus lusitanica L.: how effective are refugia in preserving genotypic diversity of clonal taxa? Mol Ecol 2013; 22:1546-57. [PMID: 23379976 DOI: 10.1111/mec.12194] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2012] [Revised: 12/03/2012] [Accepted: 12/04/2012] [Indexed: 11/27/2022]
Abstract
Refugia are expected to preserve genetic variation of relict taxa, especially in polyploids, because high gene dosages could prevent genetic erosion in small isolated populations. However, other attributes linked to polyploidy, such as asexual reproduction, may strongly limit the levels of genetic variability in relict populations. Here, ploidy levels and patterns of genetic variation at nuclear microsatellite loci were analysed in Prunus lusitanica, a polyploid species with clonal reproduction that is considered a paradigmatic example of a Tertiary relict. Sampling in this study considered a total of 20 populations of three subspecies: mainland lusitanica (Iberian Peninsula and Morocco), and island azorica (Azores) and hixa (Canary Islands and Madeira). Flow cytometry results supported an octoploid genome for lusitanica and hixa, whereas a 16-ploid level was inferred for azorica. Fixed heterozygosity of a few allele variants at most microsatellite loci resulted in levels of allelic diversity much lower than those expected for a high-order polyploid. Islands as a whole did not contain higher levels of genetic variation (allelic or genotypic) than mainland refuges, but island populations displayed more private alleles and higher genotypic diversity in old volcanic areas. Patterns of microsatellite variation were compatible with the occurrence of clonal individuals in all but two island populations, and the incidence of clonality within populations negatively correlated with the estimated timing of colonization. Our results also suggest that gene flow has been very rare among populations, and thus population growth following founder events was apparently mediated by clonality rather than seed recruitment, especially in mainland areas. This study extends to clonal taxa the idea of oceanic islands as important refugia for biodiversity, since the conditions for generation and maintenance of clonal diversity (i.e. occasional events of sexual reproduction, mutation and/or seed immigration) appear to have been more frequent in these enclaves than in mainland areas.
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Affiliation(s)
- C García-Verdugo
- Department of Integrative Biology and Jepson Herbarium, University of California, Berkeley, Berkeley, CA 94720-2465, USA
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Szövényi P, Sundberg S, Shaw AJ. Long-distance dispersal and genetic structure of natural populations: an assessment of the inverse isolation hypothesis in peat mosses. Mol Ecol 2012; 21:5461-72. [PMID: 23062192 DOI: 10.1111/mec.12055] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2011] [Revised: 08/27/2012] [Accepted: 08/29/2012] [Indexed: 11/30/2022]
Abstract
It is well accepted that the shape of the dispersal kernel, especially its tail, has a substantial effect on the genetic structure of species. Theory predicts that dispersal by fat-tailed kernels reshuffles genetic material, and thus, preserves genetic diversity during colonization. Moreover, if efficient long-distance dispersal is coupled with random colonization, an inverse isolation effect is predicted to develop in which increasing genetic diversity per colonizer is expected with increasing distance from a genetically variable source. By contrast, increasing isolation leads to decreasing genetic diversity when dispersal is via thin-tailed kernels. Here, we use a well-established model group for dispersal biology (peat mosses: genus Sphagnum) with a fat-tailed dispersal kernel, and the natural laboratory of the Stockholm archipelago to study the validity of the inverse isolation hypothesis in spore-dispersed plants in island colonization. Population genetic structure of three species (Sphagnum fallax, Sphagnum fimbriatum and Sphagnum palustre) with contrasting life histories and ploidy levels were investigated on a set of islands using microsatellites. Our data show (ϕ'(st), amova, IBD) that dispersal of the two most abundant species can be well approximated by a random colonization model. We find that genetic diversity per colonizer on islands increases with distance from the mainland for S. fallax and S. fimbriatum. By contrast, S. palustre deviates from this pattern, owing to its restricted distribution in the region, affecting its source pool strength. Therefore, the inverse isolation effect appears to hold in natural populations of peat mosses and, likely, in other organisms with small diaspores.
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Affiliation(s)
- Péter Szövényi
- Institute of Evolutionary Biology and Environmental Studies, University of Zurich, Winterthurerstr. 190, 8057, Zurich, Switzerland.
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Désamoré A, Laenen B, Stech M, Papp B, Hedenäs L, Mateo RG, Vanderpoorten A. How do temperate bryophytes face the challenge of a changing environment? Lessons from the past and predictions for the future. GLOBAL CHANGE BIOLOGY 2012; 18:2915-2924. [PMID: 24501067 DOI: 10.1111/j.1365-2486.2012.02752.x] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/16/2012] [Revised: 04/21/2012] [Accepted: 05/08/2012] [Indexed: 06/03/2023]
Abstract
Bryophytes are a group of early land plants, whose specific ecophysiological and biological features, including poikilohydry, sensitivity to moderately high temperature and high dispersal ability, make them ideal candidates for investigating the impact of climate changes. Employing a combined approach of species distribution modelling (SDM) and molecular phylogeography in the temperate moss Homalothecium sericeum, we explore the significance of the Mediterranean refugia, contrasting the southern and northern refugia hypotheses, determine the extent to which recolonization of previously glaciated areas has been facilitated by the high dispersal ability of the species and make predictions on the extent to which it will be impacted by ongoing climate change. The Mediterranean areas exhibit the highest nucleotidic diversities and host a mixture of ancestral, endemic and more recently derived haplotypes. Extra-Mediterranean areas exhibit low genetic diversities and Euro-Siberian populations display a significant signal of expansion that is identified to be of Euro-Siberian origin, pointing to the northern refugia hypothesis. The SDMs predict a global net increase in range size owing to ongoing climate change, but substantial range reductions in southern areas. Presence of a significant phylogeographical signal at different spatial scales suggests, however, that dispersal limitations might constitute, as opposed to the traditional view of spore-producing plants as efficient dispersers, a constraint for migration. This casts doubts about the ability of the species to face the massive extinctions predicted in the southern areas, threatening their status of reservoir of genetic diversity.
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