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Cronin EM, Schneider AC, Nadim F, Bucher D. Modulation by Neuropeptides with Overlapping Targets Results in Functional Overlap in Oscillatory Circuit Activation. J Neurosci 2024; 44:e1201232023. [PMID: 37968117 PMCID: PMC10851686 DOI: 10.1523/jneurosci.1201-23.2023] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2023] [Revised: 10/18/2023] [Accepted: 10/24/2023] [Indexed: 11/17/2023] Open
Abstract
Neuromodulation lends flexibility to neural circuit operation but the general notion that different neuromodulators sculpt neural circuit activity into distinct and characteristic patterns is complicated by interindividual variability. In addition, some neuromodulators converge onto the same signaling pathways, with similar effects on neurons and synapses. We compared the effects of three neuropeptides on the rhythmic pyloric circuit in the stomatogastric ganglion of male crabs, Cancer borealis Proctolin (PROC), crustacean cardioactive peptide (CCAP), and red pigment concentrating hormone (RPCH) activate the same modulatory inward current, I MI, and have convergent actions on synapses. However, while PROC targets all four neuron types in the core pyloric circuit, CCAP and RPCH target the same subset of only two neurons. After removal of spontaneous neuromodulator release, none of the neuropeptides restored the control cycle frequency, but all restored the relative timing between neuron types. Consequently, differences between neuropeptide effects were mainly found in the spiking activity of different neuron types. We performed statistical comparisons using the Euclidean distance in the multidimensional space of normalized output attributes to obtain a single measure of difference between modulatory states. Across preparations, the circuit output in PROC was distinguishable from CCAP and RPCH, but CCAP and RPCH were not distinguishable from each other. However, we argue that even between PROC and the other two neuropeptides, population data overlapped enough to prevent reliable identification of individual output patterns as characteristic for a specific neuropeptide. We confirmed this notion by showing that blind classifications by machine learning algorithms were only moderately successful.Significance Statement It is commonly assumed that distinct behaviors or circuit activities can be elicited by different neuromodulators. Yet it is unknown to what extent these characteristic actions remain distinct across individuals. We use a well-studied circuit model of neuromodulation to examine the effects of three neuropeptides, each known to produce a distinct activity pattern in controlled studies. We find that, when compared across individuals, the three peptides elicit activity patterns that are either statistically indistinguishable or show too much overlap to be labeled characteristic. We ascribe this to interindividual variability and overlapping subcellular actions of the modulators. Because both factors are common in all neural circuits, these findings have broad significance for understanding chemical neuromodulatory actions while considering interindividual variability.
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Affiliation(s)
- Elizabeth M Cronin
- Federated Department of Biological Sciences, New Jersey Institute of Technology and Rutgers University, Newark, New Jersey 07102
| | - Anna C Schneider
- Federated Department of Biological Sciences, New Jersey Institute of Technology and Rutgers University, Newark, New Jersey 07102
| | - Farzan Nadim
- Federated Department of Biological Sciences, New Jersey Institute of Technology and Rutgers University, Newark, New Jersey 07102
| | - Dirk Bucher
- Federated Department of Biological Sciences, New Jersey Institute of Technology and Rutgers University, Newark, New Jersey 07102
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2
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Steele TJ, Lanz AJ, Nagel KI. Olfactory navigation in arthropods. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2023; 209:467-488. [PMID: 36658447 PMCID: PMC10354148 DOI: 10.1007/s00359-022-01611-9] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2022] [Revised: 12/26/2022] [Accepted: 12/31/2022] [Indexed: 01/21/2023]
Abstract
Using odors to find food and mates is one of the most ancient and highly conserved behaviors. Arthropods from flies to moths to crabs use broadly similar strategies to navigate toward odor sources-such as integrating flow information with odor information, comparing odor concentration across sensors, and integrating odor information over time. Because arthropods share many homologous brain structures-antennal lobes for processing olfactory information, mechanosensors for processing flow, mushroom bodies (or hemi-ellipsoid bodies) for associative learning, and central complexes for navigation, it is likely that these closely related behaviors are mediated by conserved neural circuits. However, differences in the types of odors they seek, the physics of odor dispersal, and the physics of locomotion in water, air, and on substrates mean that these circuits must have adapted to generate a wide diversity of odor-seeking behaviors. In this review, we discuss common strategies and specializations observed in olfactory navigation behavior across arthropods, and review our current knowledge about the neural circuits subserving this behavior. We propose that a comparative study of arthropod nervous systems may provide insight into how a set of basic circuit structures has diversified to generate behavior adapted to different environments.
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Affiliation(s)
- Theresa J Steele
- Neuroscience Institute, NYU School of Medicine, 435 E 30th St., New York, NY, 10016, USA
| | - Aaron J Lanz
- Neuroscience Institute, NYU School of Medicine, 435 E 30th St., New York, NY, 10016, USA
| | - Katherine I Nagel
- Neuroscience Institute, NYU School of Medicine, 435 E 30th St., New York, NY, 10016, USA.
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3
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Cronin EM, Schneider AC, Nadim F, Bucher D. Modulation by neuropeptides with overlapping targets results in functional overlap in oscillatory circuit activation. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.06.05.543756. [PMID: 37333253 PMCID: PMC10274681 DOI: 10.1101/2023.06.05.543756] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/20/2023]
Abstract
Neuromodulation lends flexibility to neural circuit operation but the general notion that different neuromodulators sculpt neural circuit activity into distinct and characteristic patterns is complicated by interindividual variability. In addition, some neuromodulators converge onto the same signaling pathways, with similar effects on neurons and synapses. We compared the effects of three neuropeptides on the rhythmic pyloric circuit in the crab Cancer borealis stomatogastric nervous system. Proctolin (PROC), crustacean cardioactive peptide (CCAP), and red pigment concentrating hormone (RPCH) all activate the same modulatory inward current, IMI, and have convergent actions on synapses. However, while PROC targets all four neuron types in the core pyloric circuit, CCAP and RPCH target the same subset of only two neurons. After removal of spontaneous neuromodulator release, none of the neuropeptides restored the control cycle frequency, but all restored the relative timing between neuron types. Consequently, differences between neuropeptide effects were mainly found in the spiking activity of different neuron types. We performed statistical comparisons using the Euclidean distance in the multidimensional space of normalized output attributes to obtain a single measure of difference between modulatory states. Across preparations, circuit output in PROC was distinguishable from CCAP and RPCH, but CCAP and RPCH were not distinguishable from each other. However, we argue that even between PROC and the other two neuropeptides, population data overlapped enough to prevent reliable identification of individual output patterns as characteristic for a specific neuropeptide. We confirmed this notion by showing that blind classifications by machine learning algorithms were only moderately successful.
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4
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Oliveira Santos S, Tack N, Su Y, Cuenca-Jiménez F, Morales-Lopez O, Gomez-Valdez PA, Wilhelmus MM. Pleobot: a modular robotic solution for metachronal swimming. Sci Rep 2023; 13:9574. [PMID: 37311777 DOI: 10.1038/s41598-023-36185-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2023] [Accepted: 05/26/2023] [Indexed: 06/15/2023] Open
Abstract
Metachronal propulsion is widespread in aquatic swarming organisms to achieve performance and maneuverability at intermediate Reynolds numbers. Studying only live organisms limits our understanding of the mechanisms driving these abilities. Thus, we present the design, manufacture, and validation of the Pleobot-a unique krill-inspired robotic swimming appendage constituting the first platform to study metachronal propulsion comprehensively. We combine a multi-link 3D printed mechanism with active and passive actuation of the joints to generate natural kinematics. Using force and fluid flow measurements in parallel with biological data, we show the link between the flow around the appendage and thrust. Further, we provide the first account of a leading-edge suction effect contributing to lift during the power stroke. The repeatability and modularity of the Pleobot enable the independent manipulation of particular motions and traits to test hypotheses central to understanding the relationship between form and function. Lastly, we outline future directions for the Pleobot, including adapting morphological features. We foresee a broad appeal to a wide array of scientific disciplines, from fundamental studies in ecology, biology, and engineering, to developing new bio-inspired platforms for studying oceans across the solar system.
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Affiliation(s)
- Sara Oliveira Santos
- Center for Fluid Mechanics, School of Engineering, Brown University, Providence, 02912, USA
| | - Nils Tack
- Center for Fluid Mechanics, School of Engineering, Brown University, Providence, 02912, USA
| | - Yunxing Su
- Center for Fluid Mechanics, School of Engineering, Brown University, Providence, 02912, USA
| | - Francisco Cuenca-Jiménez
- Circuito Interior s/n, Engineering, Universidad Nacional Autónoma de México, 04510, Coyoacán, Mexico
| | - Oscar Morales-Lopez
- Circuito Interior s/n, Engineering, Universidad Nacional Autónoma de México, 04510, Coyoacán, Mexico
| | - P Antonio Gomez-Valdez
- Circuito Interior s/n, Engineering, Universidad Nacional Autónoma de México, 04510, Coyoacán, Mexico
| | - Monica M Wilhelmus
- Center for Fluid Mechanics, School of Engineering, Brown University, Providence, 02912, USA.
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5
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Nirody JA. Flexible locomotion in complex environments: the influence of species, speed and sensory feedback on panarthropod inter-leg coordination. J Exp Biol 2023; 226:297127. [PMID: 36912384 DOI: 10.1242/jeb.245111] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/14/2023]
Abstract
Panarthropods (a clade containing arthropods, tardigrades and onychophorans) can adeptly move across a wide range of challenging terrains and their ability to do so given their relatively simple nervous systems makes them compelling study organisms. Studies of forward walking on flat terrain excitingly point to key features in inter-leg coordination patterns that seem to be 'universally' shared across panarthropods. However, when movement through more complex, naturalistic terrain is considered, variability in coordination patterns - from the intra-individual to inter-species level - becomes more apparent. This variability is likely to be due to the interplay between sensory feedback and local pattern-generating activity, and depends crucially on species, walking speed and behavioral goal. Here, I gather data from the literature of panarthropod walking coordination on both flat ground and across more complex terrain. This Review aims to emphasize the value of: (1) designing experiments with an eye towards studying organisms in natural environments; (2) thoughtfully integrating results from various experimental techniques, such as neurophysiological and biomechanical studies; and (3) ensuring that data is collected and made available from a wider range of species for future comparative analyses.
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Affiliation(s)
- Jasmine A Nirody
- Department of Organismal Biology and Anatomy, University of Chicago, Chicago, IL 60637, USA
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6
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Schneider AC, Itani O, Bucher D, Nadim F. Neuromodulation reduces interindividual variability of neuronal output. eNeuro 2022; 9:ENEURO.0166-22.2022. [PMID: 35853725 PMCID: PMC9361792 DOI: 10.1523/eneuro.0166-22.2022] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2022] [Revised: 05/27/2022] [Accepted: 06/06/2022] [Indexed: 11/24/2022] Open
Abstract
In similar states, neural circuits produce similar outputs across individuals despite substantial interindividual variability in neuronal ionic conductances and synapses. Circuit states are largely shaped by neuromodulators that tune ionic conductances. It is therefore possible that, in addition to producing flexible circuit output, neuromodulators also contribute to output similarity despite varying ion channel expression. We studied whether neuromodulation at saturating concentrations can increase the output similarity of a single identified neuron across individual animals. Using the LP neuron of the crab stomatogastric ganglion (STG), we compared the variability of f-I curves and rebound properties in the presence of neuropeptides. The two neuropeptides we used converge to activate the same target current, which increases neuronal excitability. Output variability was lower in the presence of the neuropeptides, regardless of whether the neuropeptides significantly changed the mean of the corresponding parameter or not. However, the addition of the second neuropeptide did not add further to the reduction of variability. With a family of computational LP-like models, we explored how increased excitability and target variability contribute to output similarity and found two mechanisms: Saturation of the responses and a differential increase in baseline activity. Saturation alone can reduce the interindividual variability only if the population shares a similar ceiling for the responses. In contrast, reduction of variability due to the increase in baseline activity is independent of ceiling effects.Significance StatementThe activity of single neurons and neural circuits can be very similar across individuals even though the ionic currents underlying activity are variable. The mechanisms that compensate for the underlying variability and promote output similarity are poorly understood but may involve neuromodulation. Using an identified neuron, we show that neuropeptide modulation of excitability can reduce interindividual variability of response properties at a single-neuron level in two ways. First, the neuropeptide increases baseline excitability in a differential manner, resulting in similar response thresholds. Second, the neuropeptide increases excitability towards a shared saturation level, promoting similar maximal firing rates across individuals. Such tuning of neuronal excitability could be an important mechanism compensating for interindividual variability of ion channel expression.
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Affiliation(s)
- Anna C Schneider
- Federated Department of Biological Sciences, New Jersey Institute of Technology and Rutgers University, Newark, NJ 07102
| | - Omar Itani
- Federated Department of Biological Sciences, New Jersey Institute of Technology and Rutgers University, Newark, NJ 07102
| | - Dirk Bucher
- Federated Department of Biological Sciences, New Jersey Institute of Technology and Rutgers University, Newark, NJ 07102
| | - Farzan Nadim
- Federated Department of Biological Sciences, New Jersey Institute of Technology and Rutgers University, Newark, NJ 07102
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7
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Ruszczyk M, Webster DR, Yen J. Trends in Stroke Kinematics, Reynolds Number, and Swimming Mode in Shrimp-Like Organisms. Integr Comp Biol 2022; 62:icac067. [PMID: 35662323 DOI: 10.1093/icb/icac067] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Metachronal propulsion is commonly seen in organisms with the caridoid facies body plan, i.e. shrimp-like organisms, as they beat their pleopods in an adlocomotory sequence. These organisms exist across length scales ranging several orders of Reynolds number magnitude, from 10 to 104, during locomotion. Further, by altering their stroke kinematics, these organisms achieve three distinct swimming modes. To better understand the relationship between Reynolds number, stroke kinematics, and resulting swimming mode, Euphausia pacifica stroke kinematics were quantified using high-speed digital recordings and compared to the results for the larger E. superba. Euphausia pacifica consistently operate with a greater beat frequency and smaller stroke amplitude than E. superba for each swimming mode, suggesting that length scale may affect the kinematics needed to achieve similar swimming modes. To expand on this observation, these euphausiid data are used in combination with previously-published stroke kinematics from mysids and stomatopods to identify broad trends across swimming mode and length scale in metachrony. Principal component analysis (PCA) reveals trends in stroke kinematics and Reynolds number as well as the variation among taxonomic order. Overall, larger beat frequencies, stroke amplitudes, between-cycle phase lags, and Reynolds numbers are more representative of the fast forward swimming mode compared to the slower hovering mode. Additionally, each species has a unique combination of kinematics that result in metachrony, indicating that there are other factors, perhaps morphological, which affect the overall metachronal characteristics of an organism. Finally, uniform phase lag, in which the timing between power strokes of all pleopods is equal, in 5-paddle systems is achieved at different Reynolds numbers for different swimming modes, highlighting the importance of taking into consideration stroke kinematics, length scale, and the resulting swimming mode.
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Affiliation(s)
- Melissa Ruszczyk
- Ocean Science and Engineering, Georgia Institute of Technology, Atlanta, GA 30332
| | - Donald R Webster
- Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, GA 30332
| | - Jeannette Yen
- Biological Sciences, Georgia Institute of Technology, Atlanta, GA 30332
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8
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Hu S, Zhang J, Shelley MJ. Enhanced clamshell swimming with asymmetric beating at low Reynolds number. SOFT MATTER 2022; 18:3605-3612. [PMID: 35481832 DOI: 10.1039/d2sm00292b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
A single flexible filament can be actuated to escape from the scallop theorem and generate net propulsion at low Reynolds number. In this work, we study the dynamics of a simple boundary-driven multi-filament swimmer, a two-arm clamshell actuated at the hinged point, using a nonlocal slender body approximation with hydrodynamic interactions. We first consider an elastic clamshell consisted of flexible filaments with intrinsic curvature, and then build segmental models consisted of rigid segments connected by different mechanical joints with different forms of response torques. The simplicity of the system allows us to fully explore the effect of various parameters on the swimming performance. Optimal included angles and elastoviscous numbers are identified. The segmental models capture the characteristic dynamics of the elastic clamshell. We further demonstrate how the swimming performance can be significantly enhanced by the asymmetric beating patterns induced by biased torques.
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Affiliation(s)
- Shiyuan Hu
- Applied Mathematics Lab, Courant Institute of Mathematical Sciences, New York University, New York, NY 10012, USA
- Department of Physics, New York University, New York, NY 10003, USA
- NYU-ECNU Institute of Physics at NYU Shanghai, Shanghai 200062, China
| | - Jun Zhang
- Applied Mathematics Lab, Courant Institute of Mathematical Sciences, New York University, New York, NY 10012, USA
- Department of Physics, New York University, New York, NY 10003, USA
- NYU-ECNU Institute of Physics at NYU Shanghai, Shanghai 200062, China
| | - Michael J Shelley
- Applied Mathematics Lab, Courant Institute of Mathematical Sciences, New York University, New York, NY 10012, USA
- Center for Computational Biology, Flatiron Institute, New York, NY 10010, USA.
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9
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Jonaitis J, MacLeod J, Pulver SR. Localization of muscarinic acetylcholine receptor-dependent rhythm-generating modules in the Drosophila larval locomotor network. J Neurophysiol 2022; 127:1098-1116. [PMID: 35294308 PMCID: PMC9018013 DOI: 10.1152/jn.00106.2021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2021] [Revised: 03/09/2022] [Accepted: 03/10/2022] [Indexed: 11/22/2022] Open
Abstract
Mechanisms of rhythm generation have been extensively studied in motor systems that control locomotion over terrain in limbed animals; however, much less is known about rhythm generation in soft-bodied terrestrial animals. Here we explored how muscarinic acetylcholine receptor (mAChR)-modulated rhythm-generating networks are distributed in the central nervous system (CNS) of soft-bodied Drosophila larvae. We measured fictive motor patterns in isolated CNS preparations, using a combination of Ca2+ imaging and electrophysiology while manipulating mAChR signaling pharmacologically. Bath application of the mAChR agonist oxotremorine potentiated bilaterally asymmetric activity in anterior thoracic regions and promoted bursting in posterior abdominal regions. Application of the mAChR antagonist scopolamine suppressed rhythm generation in these regions and blocked the effects of oxotremorine. Oxotremorine triggered fictive forward crawling in preparations without brain lobes. Oxotremorine also potentiated rhythmic activity in isolated posterior abdominal CNS segments as well as isolated anterior brain and thoracic regions, but it did not induce rhythmic activity in isolated anterior abdominal segments. Bath application of scopolamine to reduced preparations lowered baseline Ca2+ levels and abolished rhythmic activity. Overall, these results suggest that mAChR signaling plays a role in enabling rhythm generation at multiple sites in the larval CNS. This work furthers our understanding of motor control in soft-bodied locomotion and provides a foundation for study of rhythm-generating networks in an emerging genetically tractable locomotor system.NEW & NOTEWORTHY Using a combination of pharmacology, electrophysiology, and Ca2+ imaging, we find that signaling through mACh receptors plays a critical role in rhythmogenesis in different regions of the Drosophila larval CNS. mAChR-dependent rhythm generators reside in distal regions of the larval CNS and provide functional substrates for central pattern-generating networks (CPGs) underlying headsweep behavior and forward locomotion. This provides new insights into locomotor CPG operation in soft-bodied animals that navigate over terrain.
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Affiliation(s)
- Julius Jonaitis
- School of Psychology and Neuroscience, University of St Andrews, St Andrews, United Kingdom
| | - James MacLeod
- School of Psychology and Neuroscience, University of St Andrews, St Andrews, United Kingdom
| | - Stefan R Pulver
- School of Psychology and Neuroscience, University of St Andrews, St Andrews, United Kingdom
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10
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Kuroda S, Uchida N, Nakagaki T. Gait switching with phase reversal of locomotory waves in the centipede Scolopocryptops rubiginosus. BIOINSPIRATION & BIOMIMETICS 2022; 17:026005. [PMID: 35253657 DOI: 10.1088/1748-3190/ac482d] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2021] [Accepted: 01/05/2022] [Indexed: 06/14/2023]
Abstract
Crawling using locomotory waves is a common method of locomotion for limbless and many-legged invertebrates and stimulates the biomimetic engineering of flexible locomotion. It is generally believed that the direction of locomotory waves is fixed for a given species. However, we found that a centipede,Scolopocryptops rubiginosus, flexibly generated its gait to allow for locomotory waves that varied in direction, depending on (i) locomotion speed and (ii) the physical conditions of terrain. We also found a new type of centipede's swimming gait unlike eel-like way known so far which is using posteriorly traveling waves of horizontal body undulation. The gait patterns of the centipede were examined in various conditions and analyzed how the waves switched in detailed. We showed that gait patterns were associated with control of stride length rather than stride frequency. Discussion was made on a possible scenario of the gait transition in the centipede compatible with our observations. This finding may give a hint at bio-inspired control of flexible gait switching in response to irregular terrain.
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Affiliation(s)
- Shigeru Kuroda
- Faculty of Software and Information Technology, Aomori University, Koubata 2-3-1, Aomori, 030-0943, Japan
| | - Nariya Uchida
- Department of Physics, Tohoku University, Sendai Miyagi 980-8578, Japan
| | - Toshiyuki Nakagaki
- Research Institute for Electronic Science, Hokkaido University, N20W10 Kita-ku, Sapporo Hokkaido 001-0020, Japan
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11
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Baldwin T, Battista NA. Hopscotching jellyfish: combining different duty cycle kinematics can lead to enhanced swimming performance. BIOINSPIRATION & BIOMIMETICS 2021; 16:066021. [PMID: 34584025 DOI: 10.1088/1748-3190/ac2afe] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2021] [Accepted: 09/28/2021] [Indexed: 06/13/2023]
Abstract
Jellyfish (Medusozoa) have been deemed the most energy-efficient animals in the world. Their bell morphology and relatively simple nervous systems make them attractive to robotocists. Although, the science community has devoted much attention to understanding their swimming performance, there is still much to be learned about the jet propulsive locomotive gait displayed by prolate jellyfish. Traditionally, computational scientists have assumed uniform duty cycle kinematics when computationally modeling jellyfish locomotion. In this study we used fluid-structure interaction modeling to determine possible enhancements in performance from shuffling different duty cycles together across multiple Reynolds numbers and contraction frequencies. Increases in speed and reductions in cost of transport were observed as high as 80% and 50%, respectively. Generally, the net effects were greater for cases involving lower contraction frequencies. Overall, robust duty cycle combinations were determined that led to enhanced or impeded performance.
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Affiliation(s)
- Tierney Baldwin
- Department of Mathematics and Statistics, The College of New Jersey, 2000 Pennington Road, Ewing Township, NJ 08628, United States of America
| | - Nicholas A Battista
- Department of Mathematics and Statistics, The College of New Jersey, 2000 Pennington Road, Ewing Township, NJ 08628, United States of America
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12
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Ford MP, Santhanakrishnan A. On the role of phase lag in multi-appendage metachronal swimming of euphausiids. BIOINSPIRATION & BIOMIMETICS 2021; 16:066007. [PMID: 33171451 DOI: 10.1088/1748-3190/abc930] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/13/2020] [Accepted: 11/10/2020] [Indexed: 06/11/2023]
Abstract
Metachronal paddling is a common method of drag-based aquatic propulsion, in which a series of swimming appendages are oscillated, with the motion of each appendage phase-shifted relative to the neighboring appendages. Ecologically and economically important euphausiid species such as Antarctic krill (Euphausia superba) swim constantly by stroking their paddling appendages (pleopods), with locomotion accounting for the bulk of their metabolic expenditure. They tailor their swimming gaits for behavioral and energetic needs by changing pleopod kinematics. The functional importance of inter-pleopod phase lag (ϕ) to metachronal swimming performance and wake structure is unknown. To examine this relation, we developed a geometrically and dynamically scaled robot ('krillbot') capable of self-propulsion. Krillbot pleopods were prescribed to mimic published kinematics of fast-forward swimming (FFW) and hovering (HOV) gaits ofE. superba, and the Reynolds number and Strouhal number of the krillbot matched well with those calculated for freely-swimmingE. superba. In addition to examining published kinematics with unevenϕbetween pleopod pairs, we modifiedE. superbakinematics to uniformly varyϕfrom 0% to 50% of the cycle. Swimming speed and thrust were largest for FFW withϕbetween 15%-25%, coincident withϕrange observed in FFW gait ofE. superba. In contrast to synchronous rowing (ϕ= 0%) where distances between hinged joints of adjacent pleopods were nearly constant throughout the cycle, metachronal rowing (ϕ> 0%) brought adjacent pleopods closer together and moved them farther apart. This factor minimized body position fluctuation and augmented metachronal swimming speed. Though swimming speed was lowest for HOV, a ventrally angled downward jet was generated that can assist with weight support during feeding. In summary, our findings show that inter-appendage phase lag can drastically alter both metachronal swimming speed and the large-scale wake structure.
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Affiliation(s)
- Mitchell P Ford
- School of Mechanical and Aerospace Engineering, Oklahoma State University, Stillwater, OK 74078, United States of America
| | - Arvind Santhanakrishnan
- School of Mechanical and Aerospace Engineering, Oklahoma State University, Stillwater, OK 74078, United States of America
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13
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Tardigrades exhibit robust interlimb coordination across walking speeds and terrains. Proc Natl Acad Sci U S A 2021; 118:2107289118. [PMID: 34446560 DOI: 10.1073/pnas.2107289118] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023] Open
Abstract
Tardigrades must negotiate heterogeneous, fluctuating environments and accordingly utilize locomotive strategies capable of dealing with variable terrain. We analyze the kinematics and interleg coordination of freely walking tardigrades (species: Hypsibius exemplaris). We find that tardigrade walking replicates several key features of walking in insects despite disparities in size, skeleton, and habitat. To test the effect of environmental changes on tardigrade locomotor control circuits we measure kinematics and interleg coordination during walking on two substrates of different stiffnesses. We find that the phase offset between contralateral leg pairs is flexible, while ipsilateral coordination is preserved across environmental conditions. This mirrors similar results in insects and crustaceans. We propose that these functional similarities in walking coordination between tardigrades and arthropods is either due to a generalized locomotor control circuit common to panarthropods or to independent convergence onto an optimal strategy for robust multilegged control in small animals with simple circuitry. Our results highlight the value of tardigrades as a comparative system toward understanding the mechanisms-neural and/or mechanical-underlying coordination in panarthropod locomotion.
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14
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Nirody JA. Universal Features in Panarthropod Inter-Limb Coordination during Forward Walking. Integr Comp Biol 2021; 61:710-722. [PMID: 34043783 PMCID: PMC8427173 DOI: 10.1093/icb/icab097] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Terrestrial animals must often negotiate heterogeneous, varying environments. Accordingly, their locomotive strategies must adapt to a wide range of terrain, as well as to a range of speeds to accomplish different behavioral goals. Studies in Drosophila have found that inter-leg coordination patterns (ICPs) vary smoothly with walking speed, rather than switching between distinct gaits as in vertebrates (e.g., horses transitioning between trotting and galloping). Such a continuum of stepping patterns implies that separate neural controllers are not necessary for each observed ICP. Furthermore, the spectrum of Drosophila stepping patterns includes all canonical coordination patterns observed during forward walking in insects. This raises the exciting possibility that the controller in Drosophila is common to all insects, and perhaps more generally to panarthropod walkers. Here, we survey and collate data on leg kinematics and inter-leg coordination relationships during forward walking in a range of arthropod species, as well as include data from a recent behavioral investigation into the tardigrade Hypsibius exemplaris. Using this comparative dataset, we point to several functional and morphological features that are shared among panarthropods. The goal of the framework presented in this review is to emphasize the importance of comparative functional and morphological analyses in understanding the origins and diversification of walking in Panarthropoda. Introduction.
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Affiliation(s)
- Jasmine A Nirody
- Center for Studies in Physics and Biology, Rockefeller University, New York, NY 10065, USA.,All Souls College, University of Oxford, Oxford, OX1 4AL, UK
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15
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Ford MP, Ray WJ, DiLuca EM, Patek SN, Santhanakrishnan A. Hybrid metachronal rowing augments swimming speed and acceleration via increased stroke amplitude. Integr Comp Biol 2021; 61:1619-1630. [PMID: 34143201 DOI: 10.1093/icb/icab141] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Numerous aquatic invertebrates use drag-based metachronal rowing for swimming, in which closely spaced appendages are oscillated starting from the posterior, with each appendage phase-shifted in time relative to its neighbor. Continuously swimming species such as Antarctic krill generally use "pure metachronal rowing" consisting of a metachronal power stroke and a metachronal recovery stroke, while burst swimming species such as many copepods and mantis shrimp typically use "hybrid metachronal rowing" consisting of a metachronal power stroke followed by a synchronous or nearly synchronous recovery stroke. Burst swimming organisms need to rapidly accelerate in order to capture prey and/or escape predation, and it is unknown whether hybrid metachronal rowing can augment acceleration and swimming speed compared to pure metachronal rowing. Simulations of rigid paddles undergoing simple harmonic motion showed that collisions between adjacent paddles restrict the maximum stroke amplitude for pure metachronal rowing. Hybrid metachronal rowing similar to that observed in mantis shrimp (Neogonodactylus bredini) permits oscillation at larger stroke amplitude while avoiding these collisions. We comparatively examined swimming speed, acceleration, and wake structure of pure and hybrid metachronal rowing strategies by using a self-propelling robot. Both swimming speed and peak acceleration of the robot increased with increasing stroke amplitude. Hybrid metachronal rowing permitted operation at larger stroke amplitude without collision of adjacent paddles on the robot, augmenting swimming speed and peak acceleration. Hybrid metachronal rowing generated a dispersed wake unlike narrower, downward-angled jets generated by pure metachronal rowing. Our findings suggest that burst swimming animals with small appendage spacing, such as copepods and mantis shrimp, can use hybrid metachronal rowing to generate large accelerations via increasing stroke amplitude without concern of appendage collision.
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Affiliation(s)
- Mitchell P Ford
- School of Mechanical and Aerospace Engineering, Oklahoma State University, Stillwater, OK 74078, USA
| | - William J Ray
- Department of Biology, Duke University, Durham, NC 27708, USA
| | - Erika M DiLuca
- School of Mechanical and Aerospace Engineering, Oklahoma State University, Stillwater, OK 74078, USA
| | - S N Patek
- Department of Biology, Duke University, Durham, NC 27708, USA
| | - Arvind Santhanakrishnan
- School of Mechanical and Aerospace Engineering, Oklahoma State University, Stillwater, OK 74078, USA
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16
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Ruszczyk M, Webster DR, Yen J. Dual Phase-Shifted Ipsilateral Metachrony in Americamysis bahia. Integr Comp Biol 2021; 61:1644-1657. [PMID: 34081112 DOI: 10.1093/icb/icab119] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023] Open
Abstract
Previously documented metachrony in euphausiids focused on one, 5-paddle metachronal stroke, where contralateral pleopod pairs on the same abdominal segment beat in tandem with each other, propelling the animal forward. In contrast, the mysid shrimp Americamysis bahia's pleopods on the same abdominal segment beat independently of each other, resulting in two, 5-paddle metachronal cycles running ipsilateral along the length of the body, 180° out of phase. The morphology, kinematics, and nondimensional measurements of efficiency are compared primarily to the one-cycle Euphausia superba to determine how the two-cycle approach alters the design and kinematics of metachrony. Pleopodal swimming in A. bahia results in only fast-forward swimming, with speeds greater than 2BL/s (body lengths per second), and can reach speeds up to 12BL/s, through a combination of increasing stroke amplitude, beat frequency, and changing their inter-limb phase lag. Trends with Strouhal number and advance ratio suggest that the kinematics of metachrony in A. bahia are favored to achieve large normalized swimming speeds.
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Affiliation(s)
- Melissa Ruszczyk
- Ocean Science and Engineering, Georgia Institute of Technology, Atlanta, GA
| | - Donald R Webster
- Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, GA
| | - Jeannette Yen
- Biological Sciences, Georgia Institute of Technology, Atlanta, GA
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17
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Ford MP, Santhanakrishnan A. Closer appendage spacing augments metachronal swimming speed by promoting tip vortex interactions. Integr Comp Biol 2021; 61:1608-1618. [PMID: 34050744 DOI: 10.1093/icb/icab112] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023] Open
Abstract
Numerous species of aquatic invertebrates, including crustaceans, swim by oscillating multiple closely spaced appendages. The coordinated, out-of-phase motion of these appendages, known as "metachronal paddling", has been well-established to improve swimming performance relative to synchronous paddling. Invertebrates employing this propulsion strategy cover a wide range of body sizes and shapes, but the ratio of appendage spacing (G) to the appendage length (L) has been reported to lie in a comparatively narrow range of 0.2 < G/L ≤ 0.65. The functional role of G/L on metachronal swimming performance is unknown. We hypothesized that for a given Reynolds number and stroke amplitude, hydrodynamic interactions promoted by metachronal stroke kinematics with small G/L can increase forward swimming speed. We used a dynamically scaled self-propelling robot to comparatively examine swimming performance and wake development of metachronal and synchronous paddling under varying G/L, phase lag, and stroke amplitude. G/L was varied from 0.4 to 1.5, with the expectation that when G/L is large, there should be no performance difference between metachronal and synchronous paddling due to a lack of interaction between vortices that form on the appendages. Metachronal stroking at non-zero phase lag with G/L in the biological range produced faster swimming speeds than synchronous stroking. As G/L increased and as stroke amplitude decreased, the influence of phase lag on the swimming speed of the robot was reduced. For smaller G/L, vortex interactions between adjacent appendages generated a horizontally-oriented wake and increased momentum fluxes relative to larger G/L, which contributed to increasing swimming speed. We find that while metachronal motion augments swimming performance for closely spaced appendages (G/L < 1), moderately spaced appendages (1.0 ≤ G/L ≤ 1.5) can benefit from metachronal motion only when the stroke amplitude is large.
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Affiliation(s)
- Mitchell P Ford
- School of Mechanical and Aerospace Engineering, Oklahoma State University, Stillwater, OK 74078, USA
| | - Arvind Santhanakrishnan
- School of Mechanical and Aerospace Engineering, Oklahoma State University, Stillwater, OK 74078, USA
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Byron ML, Murphy DW, Katija K, Hoover AP, Daniels J, Garayev K, Takagi D, Kanso E, Gemmell BJ, Ruszczyk M, Santhanakrishnan A. Metachronal motion across scales: current challenges and future directions. Integr Comp Biol 2021; 61:1674-1688. [PMID: 34048537 DOI: 10.1093/icb/icab105] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023] Open
Abstract
Metachronal motion is used across a wide range of organisms for a diverse set of functions. However, despite its ubiquity, analysis of this behavior has been difficult to generalize across systems. Here we provide an overview of known commonalities and differences between systems that use metachrony to generate fluid flow. We also discuss strategies for standardizing terminology and defining future investigative directions that are analogous to other established subfields of biomechanics. Lastly, we outline key challenges that are common to many metachronal systems, opportunities that have arisen due to the advent of new technology (both experimental and computational), and next steps for community development and collaboration across the nascent network of metachronal researchers.
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Affiliation(s)
| | - David W Murphy
- University of South Florida, 4202 E. Fowler Ave, Tampa, FL, 33620, USA
| | - Kakani Katija
- Monterey Bay Aquarium Research Institute, 7700 Sandholdt Rd, Moss Landing, CA, 95039, USA
| | | | - Joost Daniels
- Monterey Bay Aquarium Research Institute, 7700 Sandholdt Rd, Moss Landing, CA, 95039, USA
| | - Kuvvat Garayev
- University of South Florida, 4202 E. Fowler Ave, Tampa, FL, 33620, USA
| | - Daisuke Takagi
- University of Hawaii at Manoa, 2500 Campus Rd, Honolulu, HI, 96822
| | - Eva Kanso
- University of Southern California, University Park, Los Angeles, CA, 90007
| | | | - Melissa Ruszczyk
- Georgia Institute of Technology, 310 Ferst Dr, Atlanta, GA, 30332, USA
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19
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Hoover AP. Emergent metachronal waves using tension-driven, fluid-structure interaction models of tomopterid parapodia. Integr Comp Biol 2021; 61:1594-1607. [PMID: 34028537 DOI: 10.1093/icb/icab088] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Metachronal waves are ubiquitous in propulsive and fluid transport systems across many different scales and morphologies in the biological world. Tomopterids are a soft-bodied, holopelagic polychaete that use metachrony with their flexible, gelatinous parapodia to deftly navigate the midwater ocean column that they inhabit. In the following study, we develop a three-dimensional, fluid-structure interaction model of a tomopterid parapodium to explore the emergent metachronal waves formed from the interplay of passive body elasticity, active muscular tension, and hydrodynamic forces. After introducing our model, we examine the effects that varying material properties have on the stroke of an individual parapodium. We then explore the temporal dynamics when multiple parapodia are placed sequentially and how differences in the phase can alter the collective kinematics and resulting flow field.
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Affiliation(s)
- Alexander P Hoover
- The University of Akron, Department of Mathematics, Akron, OH, 44135, USA
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20
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David I, Ayali A. From Motor-Output to Connectivity: An In-Depth Study of in-vitro Rhythmic Patterns in the Cockroach Periplaneta americana. FRONTIERS IN INSECT SCIENCE 2021; 1:655933. [PMID: 38468881 PMCID: PMC10926548 DOI: 10.3389/finsc.2021.655933] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/21/2021] [Accepted: 04/22/2021] [Indexed: 03/13/2024]
Abstract
The cockroach is an established model in the study of locomotion control. While previous work has offered important insights into the interplay among brain commands, thoracic central pattern generators, and the sensory feedback that shapes their motor output, there remains a need for a detailed description of the central pattern generators' motor output and their underlying connectivity scheme. To this end, we monitored pilocarpine-induced activity of levator and depressor motoneurons in two types of novel in-vitro cockroach preparations: isolated thoracic ganglia and a whole-chain preparation comprising the thoracic ganglia and the subesophageal ganglion. Our data analyses focused on the motoneuron firing patterns and the coordination among motoneuron types in the network. The burstiness and rhythmicity of the motoneurons were monitored, and phase relations, coherence, coupling strength, and frequency-dependent variability were analyzed. These parameters were all measured and compared among network units both within each preparation and among the preparations. Here, we report differences among the isolated ganglia, including asymmetries in phase and coupling strength, which indicate that they are wired to serve different functions. We also describe the intrinsic default gait and a frequency-dependent coordination. The depressor motoneurons showed mostly similar characteristics throughout the network regardless of interganglia connectivity; whereas the characteristics of the levator motoneurons activity were mostly ganglion-dependent, and influenced by the presence of interganglia connectivity. Asymmetries were also found between the anterior and posterior homolog parts of the thoracic network, as well as between ascending and descending connections. Our analyses further discover a frequency-dependent inversion of the interganglia coordination from alternations between ipsilateral homolog oscillators to simultaneous activity. We present a detailed scheme of the network couplings, formulate coupling rules, and review a previously suggested model of connectivity in light of our new findings. Our data support the notion that the inter-hemiganglia coordination derives from the levator networks and their coupling with local depressor interneurons. Our findings also support a dominant role of the metathoracic ganglion and its ascending output in governing the anterior ganglia motor output during locomotion in the behaving animal.
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Affiliation(s)
- Izhak David
- School of Zoology, Tel Aviv University, Tel Aviv, Israel
| | - Amir Ayali
- School of Zoology, Tel Aviv University, Tel Aviv, Israel
- Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel
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21
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Garayev K, Murphy DW. Metachronal swimming of mantis shrimp: kinematics and interpleopod vortex interactions. Integr Comp Biol 2021; 61:1631-1643. [PMID: 33997904 DOI: 10.1093/icb/icab052] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023] Open
Abstract
Mantis shrimp swim via metachronal rowing, a pattern in which the pleopods (swimming limbs) stroke sequentially, starting with the last pair and followed by anterior neighbors. A similar swimming pattern is used at various sizes, Reynolds numbers, and advance ratios by diverse organisms including ciliates, ctenophores, copepods, krill, and lobsters. Understanding this type of locomotion is important because it is widespread and may inspire the design of underwater vehicles where efficiency, robustness, and maneuverability are desired. However, detailed measurements of the flow around free-swimming, metachronally rowing organisms are scarce, especially for organisms swimming in a high Reynolds number regime (Re ≥ 104). In this study, we present time-resolved, planar PIV measurements of a swimming peacock mantis shrimp (Odontodactylus scyllarus). Simultaneous kinematics measurements of the animal, which had body and pleopod lengths of 114 mm and 20 mm, respectively, reveal mean swimming speeds of 0.2-1.9 m s - 1 and pleopod beat frequencies of 3.6-13 Hz, corresponding to advance ratios of 0.75-1.84 and body-based Reynolds numbers of 23,000-217,000. Further, the animal's stroke is not purely metachronal, with a long phase lag between initiation of the first and fifth pleopod power strokes. Flow measurements in the sagittal plane show that each stroking pleopod pair creates a posteriorly moving tip vortex which evades destruction by the recovery strokes of other pleopod pairs. The vortex created by the anteriormost pleopod pair is the strongest and, owing to the animal's high advance ratio, is intercepted by the power stroke of the posteriormost pleopod pair. The vortex strength increases as a result of this interaction, which may increase swimming speed or efficiency. A relationship for vortex interception by the posterior pleopod is proposed that relates the phase lag between the interacting pleopods to the beat frequency, distance between those pleopods, and speed of the vortex relative to the animal. We describe this interaction with a novel parameter called the interpleopod vortex phase matching Strouhal number StIVPM which is equal to the phase lag between interacting pleopods. This new nondimensional parameter may be useful in predicting the conditions where a constructive interaction may occur in other species or in physical models. Finally, we relate the advance ratio to the Reynolds number ratio, the ratio between the body-based Reynolds number and the pleopod-based Reynolds number. The importance of these parameters in promoting the interpleopod vortex interactions identified here, in dynamically scaled experiments, and in wake signatures behind schooling metachronal swimmers is discussed.
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Affiliation(s)
- Kuvvat Garayev
- Department of Mechanical Engineering, University of South Florida, Tampa, FL 33620
| | - David W Murphy
- Department of Mechanical Engineering, University of South Florida, Tampa, FL 33620
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22
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Branam EN, Wong JY, Chan BKK, Chan KYK. A tail's tale: Biomechanical roles of dorsal thoracic spine of barnacle nauplii. Integr Comp Biol 2021; 61:1905-1916. [PMID: 33905496 DOI: 10.1093/icb/icab036] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Many marine invertebrates have complex life histories that begin with a planktonic larval stage. Similar to other plankton, these larval invertebrates often possess protruding body extensions, but their function beyond predator deterrence is not well-documented. For example, the planktonic nauplii of crustaceans have spines. Using the epibiotic pedunculate barnacle Octolasmis spp., we investigated how the dorsal thoracic spine affects swimming and fluid disturbance by comparing nauplii with their spines partially removed against those with intact spines. Our motion analysis showed that amputated Octolasmis spp. swam slower, in jerkier trajectories, and were less efficient per stroke cycle than those with intact spines. Amputees showed alterations in limb beat pattern: larger beat amplitude, increased phase lag, and reduced contralateral symmetry. These changes might partially help increase propulsive force generation and streamline the flow, but were insufficient to restore full function. Particle image velocimetry further showed that amputees had a larger relative area of influence, implying elevated risk by rheotactic predator. Body extensions and their interactions with limb motion play important biomechanical roles in shaping larval performance, which likely influences the evolution of form.
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Affiliation(s)
- E N Branam
- Department of Biology, Swarthmore College, Swarthmore, PA 19081, USA
| | - J Y Wong
- Biodiversity Research Center, Academia Sinica, Taipei, 11529, Taiwan.,Department of Life Science, National Taiwan Normal University, Taipei, 11677, Taiwan
| | - B K K Chan
- Biodiversity Research Center, Academia Sinica, Taipei, 11529, Taiwan
| | - K Y K Chan
- Department of Biology, Swarthmore College, Swarthmore, PA 19081, USA
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23
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Senter DM, Douglas DR, Strickland WC, Thomas SG, Talkington AM, Miller LA, Battista NA. A semi-automated finite difference mesh creation method for use with immersed boundary software IB2d and IBAMR. BIOINSPIRATION & BIOMIMETICS 2020; 16:10.1088/1748-3190/ababb0. [PMID: 32746437 PMCID: PMC7970534 DOI: 10.1088/1748-3190/ababb0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/11/2019] [Accepted: 08/03/2020] [Indexed: 06/11/2023]
Abstract
Numerous fluid-structure interaction problems in biology have been investigated using the immersed boundary method. The advantage of this method is that complex geometries, e.g., internal or external morphology, can easily be handled without the need to generate matching grids for both the fluid and the structure. Consequently, the difficulty of modeling the structure lies often in discretizing the boundary of the complex geometry (morphology). Both commercial and open source mesh generators for finite element methods have long been established; however, the traditional immersed boundary method is based on a finite difference discretization of the structure. Here we present a software library for obtaining finite difference discretizations of boundaries for direct use in the 2D immersed boundary method. This library provides tools for extracting such boundaries as discrete mesh points from digital images. We give several examples of how the method can be applied that include passing flow through the veins of insect wings, within lymphatic capillaries, and around starfish using open-source immersed boundary software.
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Affiliation(s)
- D Michael Senter
- Dept. of Mathematics, CB 3250, University of North Carolina, Chapel Hill, NC, 27599, United States of America
- Bioinformatics. and Comp. Biology, CB 7264, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, United States of America
| | - Dylan R Douglas
- Dept. of Mathematics, CB 3250, University of North Carolina, Chapel Hill, NC, 27599, United States of America
- Department of Mathematics, University of Arizona, 617 N. Santa Rita Ave. P.O. Box 210089 Tucson, AZ 85721-0089, United States of America
| | - W Christopher Strickland
- Dept. of Mathematics, CB 3250, University of North Carolina, Chapel Hill, NC, 27599, United States of America
- Dept. of Mathematics, 1403 Circle Drive, University of Tennessee at Knoxville, Knoxville, TN 37919, United States of America
| | - Steven G Thomas
- Dept. of Mathematics, CB 3250, University of North Carolina, Chapel Hill, NC, 27599, United States of America
| | - Anne M Talkington
- Dept. of Mathematics, CB 3250, University of North Carolina, Chapel Hill, NC, 27599, United States of America
- Bioinformatics. and Comp. Biology, CB 7264, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, United States of America
| | - Laura A Miller
- Dept. of Mathematics, CB 3250, University of North Carolina, Chapel Hill, NC, 27599, United States of America
- Bioinformatics. and Comp. Biology, CB 7264, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, United States of America
- Department of Mathematics, University of Arizona, 617 N. Santa Rita Ave. P.O. Box 210089 Tucson, AZ 85721-0089, United States of America
| | - Nicholas A Battista
- Dept. of Mathematics and Statistics, The College of New Jersey, 2000 Pennington Rd., Ewing, NJ 08628, United States of America
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24
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Decoding the Relationships between Body Shape, Tail Beat Frequency, and Stability for Swimming Fish. FLUIDS 2020. [DOI: 10.3390/fluids5040215] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
As fish swim through a fluid environment, they must actively use their fins in concert to stabilize their motion and have a robust form of locomotion. However, there is little knowledge of how these forces act on the fish body. In this study, we employ a 3D immersed boundary model to decode the relationship between roll, pitch, and yaw of the fish body and the driving forces acting on flexible fish bodies. Using bluegill sunfish as our representative geometry, we first examine the role of an actuating torque on the stability of the fish model, with a torque applied at the head of the unconstrained fish body. The resulting kinematics is a product of the passive elasticity, fluid forces, and driving torque. We then examine a constrained model to understand the role that fin geometry, body elasticity, and frequency play on the range of corrective forces acting on the fish. We find non-monotonic behavior with respect to frequency, suggesting that the effective flexibility of the fins play an important role in the swimming performance.
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25
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Wong JY, Chan BKK, Chan KYK. Swimming kinematics and hydrodynamics of barnacle larvae throughout development. Proc Biol Sci 2020; 287:20201360. [PMID: 33049170 PMCID: PMC7657860 DOI: 10.1098/rspb.2020.1360] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2020] [Accepted: 09/21/2020] [Indexed: 11/12/2022] Open
Abstract
Changes in size strongly influence organisms' ecological performances. For aquatic organisms, they can transition from viscosity- to inertia-dominated fluid regimes as they grow. Such transitions are often associated with changes in morphology, swimming speed and kinematics. Barnacles do not fit into this norm as they have two morphologically distinct planktonic larval phases that swim differently but are of comparable sizes and operate in the same fluid regime (Reynolds number 100-101). We quantified the hydrodynamics of the rocky intertidal stalked barnacle Capitulum mitella from the nauplius II to cyprid stage and examined how kinematics and size increases affect its swimming performance. Cyprids beat their appendages in a metachronal wave to swim faster, more smoothly, and with less backwards slip per beat cycle than did all naupliar stages. Micro-particle image velocimetry showed that cyprids generated trailing viscous vortex rings that pushed water backwards for propulsion, contrary to the nauplii's forward suction current for particle capture. Our observations highlight that zooplankton swimming performance can shift via morphological and kinematic modifications without a significant size increase. The divergence in ecological functions through ontogeny in barnacles and the removal of feeding requirement likely contributed to the evolution of the specialized, taxonomically unique cyprid phase.
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Affiliation(s)
- J. Y. Wong
- Department of Life Science, National Taiwan Normal University, Taipei 11677, Taiwan
- Biodiversity Program, Taiwan International Graduate Program, Academia Sinica, Taipei 11529, Taiwan
- Biodiversity Research Center, Academia Sinica, Taipei 11529, Taiwan
| | - Benny K. K. Chan
- Biodiversity Research Center, Academia Sinica, Taipei 11529, Taiwan
| | - K. Y. Karen Chan
- Biology Department, Swarthmore College, Swarthmore, PA 19081, USA
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26
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A Numerical Study of Metachronal Propulsion at Low to Intermediate Reynolds Numbers. FLUIDS 2020. [DOI: 10.3390/fluids5020086] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Inspired by the forward swimming of long-tailed crustaceans, we study an underwater propulsion mechanism for a swimming body with multiple rigid paddles attached underneath undergoing cycles of power and return strokes with a constant phase-difference between neighboring paddles, a phenomenon known as metachronal propulsion. To study how inter-paddle phase-difference affects flux production, we develop a computational fluid dynamics model and a numerical algorithm based on the immersed boundary method, which allows us to simulate metachronal propulsion at Reynolds numbers (RE) ranging from close to 0 to about 100. Our main finding is that the highest average flux is generated when nearest-neighbor paddles maintain an approximate 20%–25% phase-difference with the more posterior paddle leading the cycle; this result is independent of stroke frequency across the full range of RE considered here. We also find that the optimal paddle spacing and the number of paddles depend on RE; we see a qualitative transition in the dynamics of flow generated by metachronal propulsion as RE rises above 80. Roughly speaking, in terms of average flux generation, a tight paddle spacing is preferred when RE is less than 10, but a wider spacing becomes clearly favored when RE is close to or above 100. In terms of efficiency of flux generation, at RE 0.1 the maximum efficiency occurs at two paddles, and the efficiency decreases as the number of paddles increases. At RE 100 the efficiency increases as the number of paddles increases, and it appears to saturate by eight paddles, whereas using four paddles is a good tradeoff for both low and intermediate RE.
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27
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Collective Pulsing in Xeniid Corals: Part II-Using Computational Fluid Dynamics to Determine if There are Benefits to Coordinated Pulsing. Bull Math Biol 2020; 82:67. [PMID: 32474651 DOI: 10.1007/s11538-020-00741-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2019] [Accepted: 04/23/2020] [Indexed: 10/24/2022]
Abstract
Coordinated movements have been shown to enhance the speed or efficiency of swimming, flying, and pumping in many organisms. Coordinated pulsing has not been observed in many cnidarians (jellyfish, anemones, corals), as is the case for the xeniid corals considered in our corresponding paper. This observation opens the question as to whether xeniid corals, and cnidarians in general, do not coordinate their pulsing behavior for lack of a hydrodynamic advantage or for other reasons. For example, a diffuse nervous system with lack of substantial sensory input may not be capable of such coordination. Similarly, grouping may serve a defensive role rather than a fluid dynamic role. In this paper, the immersed boundary method is used to quantify the volumetric flux of fluid generated by an individual xeniid coral polyp in comparison with a pair of polyps. Both the distances between the polyps and the phase difference between each polyp are considered. More specifically, the fully coupled fluid-structure interaction problem of a coral polyp driving fluid flow is solved using a hybrid version of the immersed boundary method where the Navier-Stokes equations are solved using a finite differences and the elasticity equations describing the coral are solved using finite elements. We explore three possible hypotheses: (1) pulsing in pairs increases upward flow above the polyps and is thus beneficial, (2) these benefits vary with the polyps' pulsing phase difference, and (3) these benefits vary with the distance between the polyps. We find that there is no substantial hydrodynamic advantage to pulsing in a pair for any phase difference. The volumetric flux of fluid generated by each coral also decreases as the distance between polyps is decreased. This surprising result is consistent with measurements taken from another cnidarian with similar behavior, the upside down jellyfish, in which each medusa drives less flow when in a group.
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Zhang-Molina C, Schmit MB, Cai H. Neural Circuit Mechanism Underlying the Feeding Controlled by Insula-Central Amygdala Pathway. iScience 2020; 23:101033. [PMID: 32311583 PMCID: PMC7168768 DOI: 10.1016/j.isci.2020.101033] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2019] [Revised: 01/02/2020] [Accepted: 03/31/2020] [Indexed: 12/16/2022] Open
Abstract
The Central nucleus of amygdala (CeA) contains distinct populations of neurons that play opposing roles in feeding. The circuit mechanism of how CeA neurons process information sent from their upstream inputs to regulate feeding is still unclear. Here we show that activation of the neural pathway projecting from insular cortex neurons to the CeA suppresses food intake. Surprisingly, we find that the inputs from insular cortex form excitatory connections with similar strength to all types of CeA neurons. To reconcile this puzzling result, and previous findings, we developed a conductance-based dynamical systems model for the CeA neuronal network. Computer simulations showed that both the intrinsic electrophysiological properties of individual CeA neurons and the overall synaptic organization of the CeA circuit play a functionally significant role in shaping CeA neural dynamics. We successfully identified a specific CeA circuit structure that reproduces the desired circuit output consistent with existing experimentally observed feeding behaviors. Activation of the insular cortex→central amygdala (CeA) pathway suppresses feeding Insular cortex neurons send similar excitatory inputs to different types of CeA neurons Model suggests a required circuit with both late firing and regular spiking cells The circuit model can explain current and previous CeA-mediated feeding behaviors
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Affiliation(s)
| | - Matthew B Schmit
- Department of Neuroscience, University of Arizona, Tucson, AZ 85721, USA; Graduate Interdisciplinary Program in Neuroscience, University of Arizona, Tucson, AZ 85721, USA
| | - Haijiang Cai
- Department of Neuroscience, University of Arizona, Tucson, AZ 85721, USA; Bio5 Institute and Department of Neurology, University of Arizona, Tucson, AZ 85721, USA.
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Towards an Understanding of Control of Complex Rhythmical "Wavelike" Coordination in Humans. Brain Sci 2020; 10:brainsci10040215. [PMID: 32260547 PMCID: PMC7226120 DOI: 10.3390/brainsci10040215] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2020] [Revised: 03/28/2020] [Accepted: 04/02/2020] [Indexed: 02/07/2023] Open
Abstract
How does the human neurophysiological system self-organize to achieve optimal phase relationships among joints and limbs, such as in the composite rhythms of butterfly and front crawl swimming, drumming, or dancing? We conducted a systematic review of literature relating to central nervous system (CNS) control of phase among joint/limbs in continuous rhythmic activities. SCOPUS and Web of Science were searched using keywords “Phase AND Rhythm AND Coordination”. This yielded 1039 matches from which 23 papers were extracted for inclusion based on screening criteria. The empirical evidence arising from in-vivo, fictive, in-vitro, and modelling of neural control in humans, other species, and robots indicates that the control of movement is facilitated and simplified by innervating muscle synergies by way of spinal central pattern generators (CPGs). These typically behave like oscillators enabling stable repetition across cycles of movements. This approach provides a foundation to guide the design of empirical research in human swimming and other limb independent activities. For example, future research could be conducted to explore whether the Saltiel two-layer CPG model to explain locomotion in cats might also explain the complex relationships among the cyclical motions in human swimming.
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Abstract
Various organisms such as crustaceans use their appendages for locomotion. If they are close to a confining boundary then viscous as opposed to inertial effects can play a central role in governing the dynamics. To study the minimal ingredients needed for swimming without inertia, we built an experimental system featuring a robot equipped with a pair of rigid slender arms with negligible inertia. Our results show that directing the arms to oscillate about the same time-averaged orientation produces no net displacement of the robot each cycle, regardless of any phase delay between the oscillating arms. The robot is able to swim if the arms oscillate asynchronously around distinct orientations. The measured displacement over time matches well with a mathematical model based on slender-body theory for Stokes flow. Near a confining boundary, the robot with no net displacement every cycle showed similar behavior, while the swimming robot increased in speed closer to the boundary.
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Ford MP, Lai HK, Samaee M, Santhanakrishnan A. Hydrodynamics of metachronal paddling: effects of varying Reynolds number and phase lag. ROYAL SOCIETY OPEN SCIENCE 2019; 6:191387. [PMID: 31824735 PMCID: PMC6837200 DOI: 10.1098/rsos.191387] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/08/2019] [Accepted: 09/20/2019] [Indexed: 05/13/2023]
Abstract
Negatively buoyant freely swimming crustaceans such as krill must generate downward momentum in order to maintain their position in the water column. These animals use a drag-based propulsion strategy, where pairs of closely spaced swimming limbs are oscillated rhythmically from the tail to head. Each pair is oscillated with a phase delay relative to the neighbouring pair, resulting in a metachronal wave travelling in the direction of animal motion. It remains unclear how oscillations of limbs in the horizontal plane can generate vertical momentum. Using particle image velocimetry measurements on a robotic model, we observed that metachronal paddling with non-zero phase lag created geometries of adjacent paddles that promote the formation of counter-rotating vortices. The interaction of these vortices resulted in generating large-scale angled downward jets. Increasing phase lag resulted in more vertical orientation of the jet, and phase lags in the range used by Antarctic krill produced the most total momentum. Synchronous paddling produced lower total momentum when compared with metachronal paddling. Lowering Reynolds number by an order of magnitude below the range of adult krill (250-1000) showed diminished downward propagation of the jet and lower vertical momentum. Our findings show that metachronal paddling is capable of producing flows that can generate both lift (vertical) and thrust (horizontal) forces needed for fast forward swimming and hovering.
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Affiliation(s)
| | | | | | - Arvind Santhanakrishnan
- School of Mechanical and Aerospace Engineering, Oklahoma State University, Stillwater, OK 74078, USA
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32
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Davis AL, Hoover AP, Miller LA. Lift and Drag Acting on the Shell of the American Horseshoe Crab (Limulus polyphemus). Bull Math Biol 2019; 81:3803-3822. [PMID: 31435839 DOI: 10.1007/s11538-019-00657-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2019] [Accepted: 08/08/2019] [Indexed: 10/26/2022]
Abstract
The intertidal zone is a turbulent landscape where organisms face numerous mechanical challenges from powerful waves. A model for understanding the solutions to these physical problems, the American horseshoe crab (Limulus polyphemus), is a marine arthropod that mates in the intertidal zone, where it must contend with strong ambient flows to maintain its orientation during locomotion and reproduction. Possible strategies to maintain position include either negative lift generation or the minimization of positive lift in flow. To quantify flow over the shell and the forces generated, we laser-scanned the 3D shape of a horseshoe crab, and the resulting digital reconstruction was used to 3D-print a physical model. We then recorded the movement of tracking particles around the shell model with high-speed video and analyzed the time-lapse series using particle image velocimetry (PIV). The velocity vector fields from PIV were used to validate numerical simulations performed with the immersed boundary (IB) method. IB simulations allowed us to resolve the forces acting on the shell, as well as the local three-dimensional flow velocities and pressures. Both IB simulations and PIV analysis of vorticity and velocity at a flow speed of 13 cm/s show negative lift for negative and zero angles of attack, and positive lift for positive angles of attack in a free-stream environment. In shear flow simulations, we found near-zero lift for all orientations tested. Because horseshoe crabs are likely to be found primarily at near-zero angles of attack, we suggest that this negative lift helps maintain the orientation of the crab during locomotion and mating. This study provides a preliminary foundation for assessing the relationship between documented morphological variation and potential environmental variation for distinct populations of horseshoe crabs along the Atlantic Coast. It also motivates future studies which could consider the stability of the horseshoe crab in unsteady, oscillating flows.
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Affiliation(s)
- Alexander L Davis
- Duke University, Room 137, Biological Sciences Building, 130 Science Drive, Durham, NC, 27708, USA. .,Department of Biology, Coker Hall, CB 3280, University of North Carolina, 120 South Road, Chapel Hill, NC, 27599, USA.
| | - Alexander P Hoover
- Department of Mathematics, Buchtel College of Arts and Sciences, University of Akron, Akron, OH, 44325-4002, USA
| | - Laura A Miller
- Department of Mathematics, University of North Carolina, Phillips Hall, CB 3250, Chapel Hill, NC, 27599, USA.,Department of Biology, Coker Hall, CB 3280, University of North Carolina, 120 South Road, Chapel Hill, NC, 27599, USA
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33
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Martinez D, Anwar H, Bose A, Bucher DM, Nadim F. Short-term synaptic dynamics control the activity phase of neurons in an oscillatory network. eLife 2019; 8:46911. [PMID: 31180323 PMCID: PMC6590986 DOI: 10.7554/elife.46911] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2019] [Accepted: 06/08/2019] [Indexed: 11/17/2022] Open
Abstract
In oscillatory systems, neuronal activity phase is often independent of network frequency. Such phase maintenance requires adjustment of synaptic input with network frequency, a relationship that we explored using the crab, Cancer borealis, pyloric network. The burst phase of pyloric neurons is relatively constant despite a > two fold variation in network frequency. We used noise input to characterize how input shape influences burst delay of a pyloric neuron, and then used dynamic clamp to examine how burst phase depends on the period, amplitude, duration, and shape of rhythmic synaptic input. Phase constancy across a range of periods required a proportional increase of synaptic duration with period. However, phase maintenance was also promoted by an increase of amplitude and peak phase of synaptic input with period. Mathematical analysis shows how short-term synaptic plasticity can coordinately change amplitude and peak phase to maximize the range of periods over which phase constancy is achieved.
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Affiliation(s)
- Diana Martinez
- Federated Department of Biological Sciences, New Jersey Institute of Technology and Rutgers University, Newark, United States
| | - Haroon Anwar
- Federated Department of Biological Sciences, New Jersey Institute of Technology and Rutgers University, Newark, United States
| | - Amitabha Bose
- Department of Mathematical Sciences, New Jersey Institute of Technology, Newark, United States
| | - Dirk M Bucher
- Federated Department of Biological Sciences, New Jersey Institute of Technology and Rutgers University, Newark, United States
| | - Farzan Nadim
- Federated Department of Biological Sciences, New Jersey Institute of Technology and Rutgers University, Newark, United States.,Department of Mathematical Sciences, New Jersey Institute of Technology, Newark, United States
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Spardy LE, Lewis TJ. The role of long-range coupling in crayfish swimmeret phase-locking. BIOLOGICAL CYBERNETICS 2018; 112:305-321. [PMID: 29569056 DOI: 10.1007/s00422-018-0752-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/13/2017] [Accepted: 02/23/2018] [Indexed: 06/08/2023]
Abstract
During forward swimming, crayfish and other long-tailed crustaceans rhythmically move four pairs of limbs called swimmerets to propel themselves through the water. This behavior is characterized by a particular stroke pattern in which the most posterior limb pair leads the rhythmic cycle and adjacent swimmerets paddle sequentially with a delay of roughly 25% of the period. The neural circuit underlying limb coordination consists of a chain of local modules, each of which controls a pair of limbs. All modules are directly coupled to one another, but the inter-module coupling strengths decrease with the distance of the connection. Prior modeling studies of the swimmeret neural circuit have included only the dominant nearest-neighbor coupling. Here, we investigate the potential modulatory role of long-range connections between modules. Numerical simulations and analytical arguments show that these connections cause decreases in the phase-differences between neighboring modules. Combined with previous results from a computational fluid dynamics model, we posit that this phenomenon might ensure that the resultant limb coordination lies within a range where propulsion is optimal. To further assess the effects of long-range coupling, we modify the model to reflect an experimental preparation where synaptic transmission from a middle module is blocked, and we generate predictions for the phase-locking properties in this system.
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Affiliation(s)
- Lucy E Spardy
- Department of Mathematics, Skidmore College, 815 North Broadway, Saratoga Springs, NY, 12866, USA.
| | - Timothy J Lewis
- Department of Mathematics, University of California, One Shields Ave, Davis, CA, 95616, USA
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Yoshida M, Nagayama T, Newland P. Nitric oxide-mediated intersegmental modulation of cycle frequency in the crayfish swimmeret system. Biol Open 2018; 7:bio.032789. [PMID: 29716944 PMCID: PMC5992521 DOI: 10.1242/bio.032789] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Crayfish swimmerets are paired appendages located on the ventral side of each abdominal segment that show rhythmic beating during forward swimming produced by central pattern generators in most abdominal segments. For animals with multiple body segments and limbs, intersegmental coordination of central pattern generators in each segment is crucial for the production of effective movements. Here we develop a novel pharmacological approach to analyse intersegmental modulation of swimmeret rhythm by selectively elevating nitric oxide levels and reducing them with pharmacological agents, in specific ganglia. Bath application of L-arginine, the substrate NO synthesis, increased the cyclical spike responses of the power-stroke motor neurons. By contrast the NOS inhibitor, L-NAME decreased them. To determine the role of the different local centres in producing and controlling the swimmeret rhythm, these two drugs were applied locally to two separate ganglia following bath application of carbachol. Results revealed that there was both ascending and descending intersegmental modulation of cycle frequency of the swimmeret rhythm in the abdominal ganglia and that synchrony of cyclical activity between segments of segments was maintained. We also found that there were gradients in the strength effectiveness in modulation, that ascending modulation of the swimmeret rhythm was stronger than descending modulation. Summary: We develop a novel pharmacological approach using a nitric oxide donor and a nitric oxide synthase inhibitor to analyse modulation and segmental synchrony in the swimmeret rhythm of the crayfish.
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Affiliation(s)
- Misaki Yoshida
- Division of Biology, Graduate School of Science and Engineering, Yamagata University, 990-8560, Yamagata, Japan
| | - Toshiki Nagayama
- Department of Biology, Faculty of Science, Yamagata University, 990-8560, Yamagata, Japan
| | - Philip Newland
- Center of Biological Sciences, University of Southampton, Highfield Campus, Southampton SO17 1BJ, UK
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36
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Battista NA, Strickland WC, Miller LA. IB2d: a Python and MATLAB implementation of the immersed boundary method. BIOINSPIRATION & BIOMIMETICS 2017; 12:036003. [PMID: 28355146 PMCID: PMC7970532 DOI: 10.1088/1748-3190/aa5e08] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
The development of fluid-structure interaction (FSI) software involves trade-offs between ease of use, generality, performance, and cost. Typically there are large learning curves when using low-level software to model the interaction of an elastic structure immersed in a uniform density fluid. Many existing codes are not publicly available, and the commercial software that exists usually requires expensive licenses and may not be as robust or allow the necessary flexibility that in house codes can provide. We present an open source immersed boundary software package, IB2d, with full implementations in both MATLAB and Python, that is capable of running a vast range of biomechanics models and is accessible to scientists who have experience in high-level programming environments. IB2d contains multiple options for constructing material properties of the fiber structure, as well as the advection-diffusion of a chemical gradient, muscle mechanics models, and artificial forcing to drive boundaries with a preferred motion.
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Affiliation(s)
- Nicholas A Battista
- Department of Mathematics, CB 3250, University of North Carolina, Chapel Hill, NC, 27599, United States of America. Department of Biology, CB 3280, University of North Carolina, Chapel Hill, NC, 27599, United States of America. www.github.com/nickabattista/IB2d
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37
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Robust phase-waves in chains of half-center oscillators. J Math Biol 2016; 74:1627-1656. [DOI: 10.1007/s00285-016-1066-5] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2015] [Revised: 06/16/2016] [Indexed: 10/20/2022]
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38
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Lenz PH, Takagi D, Hartline DK. Choreographed swimming of copepod nauplii. J R Soc Interface 2016; 12:rsif.2015.0776. [PMID: 26490629 DOI: 10.1098/rsif.2015.0776] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Small metazoan paddlers, such as crustacean larvae (nauplii), are abundant, ecologically important and active swimmers, which depend on exploiting viscous forces for locomotion. The physics of micropaddling at low Reynolds number was investigated using a model of swimming based on slender-body theory for Stokes flow. Locomotion of nauplii of the copepod Bestiolina similis was quantified from high-speed video images to obtain precise measurements of appendage movements and the resulting displacement of the body. The kinematic and morphological data served as inputs to the model, which predicted the displacement in good agreement with observations. The results of interest did not depend sensitively on the parameters within the error of measurement. Model tests revealed that the commonly attributed mechanism of 'feathering' appendages during return strokes accounts for only part of the displacement. As important for effective paddling at low Reynolds number is the ability to generate a metachronal sequence of power strokes in combination with synchronous return strokes of appendages. The effect of feathering together with a synchronous return stroke is greater than the sum of each factor individually. The model serves as a foundation for future exploration of micropaddlers swimming at intermediate Reynolds number where both viscous and inertial forces are important.
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Affiliation(s)
- Petra H Lenz
- Békésy Laboratory of Neurobiology, Pacific Biosciences Research Center, University of Hawaii at Manoa, 1993 East West Road, Honolulu, HI 96822, USA
| | - Daisuke Takagi
- Department of Mathematics, University of Hawaii at Manoa, 2565 McCarthy Mall, Honolulu, HI 96822, USA
| | - Daniel K Hartline
- Békésy Laboratory of Neurobiology, Pacific Biosciences Research Center, University of Hawaii at Manoa, 1993 East West Road, Honolulu, HI 96822, USA
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39
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McGrath LL, Vollmer SV, Kaluziak ST, Ayers J. De novo transcriptome assembly for the lobster Homarus americanus and characterization of differential gene expression across nervous system tissues. BMC Genomics 2016; 17:63. [PMID: 26772543 PMCID: PMC4715275 DOI: 10.1186/s12864-016-2373-3] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2015] [Accepted: 01/06/2016] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND The American lobster, Homarus americanus, is an important species as an economically valuable fishery, a key member in marine ecosystems, and a well-studied model for central pattern generation, the neural networks that control rhythmic motor patterns. Despite multi-faceted scientific interest in this species, currently our genetic resources for the lobster are limited. In this study, we de novo assemble a transcriptome for Homarus americanus using central nervous system (CNS), muscle, and hybrid neurosecretory tissues and compare gene expression across these tissue types. In particular, we focus our analysis on genes relevant to central pattern generation and the identity of the neurons in a neural network, which is defined by combinations of genes distinguishing the neuronal behavior and phenotype, including ion channels, neurotransmitters, neuromodulators, receptors, transcription factors, and other gene products. RESULTS Using samples from the central nervous system (brain, abdominal ganglia), abdominal muscle, and heart (cardiac ganglia, pericardial organs, muscle), we used RNA-Seq to characterize gene expression patterns across tissues types. We also compared control tissues with those challenged with the neuropeptide proctolin in vivo. Our transcriptome generated 34,813 transcripts with known protein annotations. Of these, 5,000-10,000 of annotated transcripts were significantly differentially expressed (DE) across tissue types. We found 421 transcripts for ion channels and identified receptors and/or proteins for over 20 different neurotransmitters and neuromodulators. Results indicated tissue-specific expression of select neuromodulator (allostatin, myomodulin, octopamine, nitric oxide) and neurotransmitter (glutamate, acetylcholine) pathways. We also identify differential expression of ion channel families, including kainite family glutamate receptors, inward-rectifying K(+) (IRK) channels, and transient receptor potential (TRP) A family channels, across central pattern generating tissues. CONCLUSIONS Our transcriptome-wide profiles of the rhythmic pattern generating abdominal and cardiac nervous systems in Homarus americanus reveal candidates for neuronal features that drive the production of motor output in these systems.
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Affiliation(s)
- Lara Lewis McGrath
- Northeastern University Marine Science Center, 430 Nahant Rd, Nahant, MA, 01908, USA. .,Current address: AstraZeneca, 35 Gatehouse Dr, Waltham, MA, 02451, USA.
| | - Steven V Vollmer
- Northeastern University Marine Science Center, 430 Nahant Rd, Nahant, MA, 01908, USA.
| | - Stefan T Kaluziak
- Northeastern University Marine Science Center, 430 Nahant Rd, Nahant, MA, 01908, USA.
| | - Joseph Ayers
- Northeastern University Marine Science Center, 430 Nahant Rd, Nahant, MA, 01908, USA.
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40
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Martínez-Llinàs J, Colet P. In-phase, out-of-phase and T/4 synchronization of square waves in delay-coupled non-identical optoelectronic oscillators. OPTICS EXPRESS 2015; 23:24785-24799. [PMID: 26406679 DOI: 10.1364/oe.23.024785] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
We model two non-identical delay-line optoelectronic oscillators mutually coupled through delayed cross-feedback. The system can generate multi-stable nanosecond periodic square-wave solutions which arise through a Hopf instability. We show that for suitable ratios between self and cross delay times, the two oscillators generate square waves with different amplitude but synchronized in phase, out of phase or with a dephasing of a quarter of the period. We also show that the synchronization is robust to small mismatches in the delay times.
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41
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Takagi D. Swimming with stiff legs at low Reynolds number. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015; 92:023020. [PMID: 26382516 DOI: 10.1103/physreve.92.023020] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2014] [Indexed: 05/27/2023]
Abstract
Locomotion at low Reynolds number is not possible with cycles of reciprocal motion, an example being the oscillation of a single pair of rigid paddles or legs. Here, I demonstrate the possibility of swimming with two or more pairs of legs. They are assumed to oscillate collectively in a metachronal wave pattern in a minimal model based on slender-body theory for Stokes flow. The model predicts locomotion in the direction of the traveling wave, as commonly observed along the body of free-swimming crustaceans. The displacement of the body and the swimming efficiency depend on the number of legs, the amplitude, and the phase of oscillations. This study shows that paddling legs with distinct orientations and phases offers a simple mechanism for driving flow.
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Affiliation(s)
- Daisuke Takagi
- Department of Mathematics, University of Hawaii at Manoa, Honolulu, Hawaii 96822, USA
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42
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Hoover A, Miller L. A numerical study of the benefits of driving jellyfish bells at their natural frequency. J Theor Biol 2015; 374:13-25. [DOI: 10.1016/j.jtbi.2015.03.016] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2014] [Revised: 03/05/2015] [Accepted: 03/12/2015] [Indexed: 10/23/2022]
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43
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Robust circuit rhythms in small circuits arise from variable circuit components and mechanisms. Curr Opin Neurobiol 2014; 31:156-63. [PMID: 25460072 DOI: 10.1016/j.conb.2014.10.012] [Citation(s) in RCA: 105] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2014] [Revised: 10/20/2014] [Accepted: 10/21/2014] [Indexed: 11/22/2022]
Abstract
Small central pattern generating circuits found in invertebrates have significant advantages for the study of the circuit mechanisms that generate brain rhythms. Experimental and computational studies of small oscillatory circuits reveal that similar rhythms can arise from disparate mechanisms. Animal-to-animal variation in the properties of single neurons and synapses may underly robust circuit performance, and can be revealed by perturbations. Neuromodulation can produce altered circuit performance but also ensure reliable circuit function.
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Mulloney B, Smarandache-Wellmann C, Weller C, Hall WM, DiCaprio RA. Proprioceptive feedback modulates coordinating information in a system of segmentally distributed microcircuits. J Neurophysiol 2014; 112:2799-809. [PMID: 25185816 PMCID: PMC4254881 DOI: 10.1152/jn.00321.2014] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
The system of modular neural circuits that controls crustacean swimmerets drives a metachronal sequence of power-stroke (PS, retraction) and return-stroke (RS, protraction) movements that propels the animal forward efficiently. These neural modules are synchronized by an intersegmental coordinating circuit that imposes characteristic phase differences between these modules. Using a semi-intact preparation that left one swimmeret attached to an otherwise isolated central nervous system (CNS) of the crayfish, Pacifastacus leniusculus, we investigated how the rhythmic activity of this system responded to imposed movements. We recorded extracellularly from the PS and RS nerves that innervated the attached limb and from coordinating axons that encode efference copies of the periodic bursts in PS and RS axons. Simultaneously, we recorded from homologous nerves in more anterior and posterior segments. Maintained retractions did not affect cycle period but promptly weakened PS bursts, strengthened RS bursts, and caused corresponding changes in the strength and timing of efference copies in the module's coordinating axons. Changes in these efference copies then caused changes in the phase and duration, but not the strength, of PS bursts in modules controlling neighboring swimmerets. These changes were promptly reversed when the limb was released. Each swimmeret is innervated by two nonspiking stretch receptors (NSSRs) that depolarize when the limb is retracted. Voltage clamp of an NSSR changed the durations and strengths of bursts in PS and RS axons innervating the same limb and caused corresponding changes in the efference copies of this motor output.
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Affiliation(s)
- Brian Mulloney
- Department of Neurobiology, Physiology, and Behavior, University of California, Davis, California;
| | | | - Cynthia Weller
- Department of Neurobiology, Physiology, and Behavior, University of California, Davis, California
| | - Wendy M Hall
- Department of Neurobiology, Physiology, and Behavior, University of California, Davis, California
| | - Ralph A DiCaprio
- Department of Biological Sciences, Ohio University, Athens, Ohio
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Abstract
We describe synaptic connections through which information essential for encoding efference copies reaches two coordinating neurons in each of the microcircuits that controls limbs on abdominal segments of the crayfish, Pacifastacus leniusculus. In each microcircuit, these coordinating neurons fire bursts of spikes simultaneously with motor neurons. These bursts encode timing, duration, and strength of each motor burst. Using paired microelectrode recordings, we demonstrate that one class of nonspiking neurons in each microcircuit's pattern-generating kernel--IPS--directly inhibits the ASCE coordinating neuron that copies each burst in power-stroke (PS) motor neurons. This inhibitory synapse parallels IPS's inhibition of the same PS motor neurons. Using a disynaptic pathway to control its membrane potential, we demonstrate that a second type of nonspiking interneuron in the pattern-generating kernel--IRSh--inhibits the DSC coordinating neuron that copies each burst in return-stroke (RS) motor neurons. This inhibitory synapse parallels IRS's inhibition of the microcircuit's RS motor neurons. Experimental changes in the membrane potential of one IPS or one IRSh neuron simultaneously changed the strengths of motor bursts, durations, numbers of spikes, and spike frequency in the simultaneous ASCE and DSC bursts. ASCE and DSC coordinating neurons link the segmentally distributed microcircuits into a coordinated system that oscillates with the same period and with stable phase differences. The inhibitory synapses from different pattern-generating neurons that parallel their inhibition of different sets of motor neurons enable ASCE and DSC to encode details of each oscillation that are necessary for stable, adaptive synchronization of the system.
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