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Chen Y, Wang X, Luo S, Dai C, Wu Y, Zhao J, Liu W, Kong D, Yang Y, Geng L, Liu Y, Wei D. Electrically Oriented Antibodies on Transistor for Monitoring Several Copies of Methylated DNA. Anal Chem 2024; 96:8300-8307. [PMID: 38747393 DOI: 10.1021/acs.analchem.3c04670] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/29/2024]
Abstract
An antibody transistor is a promising biosensing platform for the diagnosis and monitoring of various diseases. Nevertheless, the low concentration and short half-life of biomarkers require biodetection at the trace-molecule level, which remains a challenge for existing antibody transistors. Herein, we demonstrate a graphene field-effect transistor (gFET) with electrically oriented antibody probes (EOA-gFET) for monitoring several copies of methylated DNA. The electric field confines the orientation of antibody probes on graphene and diminishes the distance between graphene and methylated DNAs captured by antibodies, generating more induced charges on graphene and amplifying the electric signal. EOA-gFET realizes a limit of detection (LoD) of ∼0.12 copy μL-1, reaching the lowest LoD reported before. EOA-gFET shows a distinguishable signal for liver cancer clinical serum samples within ∼6 min, which proves its potential as a powerful tool for disease screening and diagnosis.
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Affiliation(s)
- Yiheng Chen
- State Key Laboratory of Molecular Engineering of Polymers, Department of Macromolecular Science, Fudan University, Shanghai 200433, China
- Laboratory of Molecular Materials and Devices, Department of Material Science, Fudan University, Shanghai 200433, China
| | - Xuejun Wang
- State Key Laboratory of Molecular Engineering of Polymers, Department of Macromolecular Science, Fudan University, Shanghai 200433, China
- Laboratory of Molecular Materials and Devices, Department of Material Science, Fudan University, Shanghai 200433, China
| | - Shi Luo
- State Key Laboratory of Molecular Engineering of Polymers, Department of Macromolecular Science, Fudan University, Shanghai 200433, China
- Laboratory of Molecular Materials and Devices, Department of Material Science, Fudan University, Shanghai 200433, China
| | - Changhao Dai
- State Key Laboratory of Molecular Engineering of Polymers, Department of Macromolecular Science, Fudan University, Shanghai 200433, China
- Laboratory of Molecular Materials and Devices, Department of Material Science, Fudan University, Shanghai 200433, China
| | - Yungen Wu
- State Key Laboratory of Molecular Engineering of Polymers, Department of Macromolecular Science, Fudan University, Shanghai 200433, China
- Laboratory of Molecular Materials and Devices, Department of Material Science, Fudan University, Shanghai 200433, China
| | - Junhong Zhao
- State Key Laboratory of Molecular Engineering of Polymers, Department of Macromolecular Science, Fudan University, Shanghai 200433, China
- Laboratory of Molecular Materials and Devices, Department of Material Science, Fudan University, Shanghai 200433, China
| | - Wentao Liu
- State Key Laboratory of Molecular Engineering of Polymers, Department of Macromolecular Science, Fudan University, Shanghai 200433, China
- Laboratory of Molecular Materials and Devices, Department of Material Science, Fudan University, Shanghai 200433, China
| | - Derong Kong
- State Key Laboratory of Molecular Engineering of Polymers, Department of Macromolecular Science, Fudan University, Shanghai 200433, China
- Laboratory of Molecular Materials and Devices, Department of Material Science, Fudan University, Shanghai 200433, China
| | - Yuetong Yang
- State Key Laboratory of Molecular Engineering of Polymers, Department of Macromolecular Science, Fudan University, Shanghai 200433, China
- Laboratory of Molecular Materials and Devices, Department of Material Science, Fudan University, Shanghai 200433, China
| | - Li Geng
- Department of Special Treatment, Eastern Hepatobiliary Surgery Hospital, Shanghai, 200438, China
| | - Yunqi Liu
- Laboratory of Molecular Materials and Devices, Department of Material Science, Fudan University, Shanghai 200433, China
- Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Dacheng Wei
- State Key Laboratory of Molecular Engineering of Polymers, Department of Macromolecular Science, Fudan University, Shanghai 200433, China
- Laboratory of Molecular Materials and Devices, Department of Material Science, Fudan University, Shanghai 200433, China
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LariMojarad I, Mousavi M, Moeini Manesh MM, Bouloorchi Tabalvandani M, Badieirostami M. Electric Field-Assisted Molecularly Imprinted Polymer-Modified QCM Sensor for Enhanced Detection of Immunoglobulin. ACS OMEGA 2024; 9:16026-16034. [PMID: 38617614 PMCID: PMC11007686 DOI: 10.1021/acsomega.3c09511] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Revised: 02/24/2024] [Accepted: 03/13/2024] [Indexed: 04/16/2024]
Abstract
In this study, an electric-field-assisted molecularly imprinted polymer (EFAMIP) as an enhanced form of MIP was developed to improve the MIP-modified quartz crystal microbalance (QCM) biosensors. While exerting a vertical electric field, polymerization of methacrylic acid in the presence of immunoglobulin G (IgG) as the template was initiated, and later, after the template removal process, the EFAMIPs were obtained. The polymer surface characterization was conducted by using a scanning electron microscope. The impact of electric field direction on IgG binding sites, forming either EFAMIP-Fab or EFAMIP-Fc, was assessed. Next, the static measurement results in liquid for EFAMIP-modified QCM and MIP-modified QCM were compared. While encompassing IgG, EFAMIP-modified QCMs exhibited up to a 113.5% higher frequency shift than typical MIP in time-limited detection. The final frequency shift of EFAMIP, which determines the detection limit of IgG, was improved up to 12.5% compared to typical MIP. Moreover, the EFAMIP-Fab performance was promising for the selective detection of IgG in a solution containing different types of immunoglobulins.
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Affiliation(s)
- Iliya LariMojarad
- MEMS Lab, School of Electrical
and Computer Engineering, College of Engineering, University of Tehran, Tehran 1439957131, Iran
| | - MirBehrad Mousavi
- MEMS Lab, School of Electrical
and Computer Engineering, College of Engineering, University of Tehran, Tehran 1439957131, Iran
| | - Mohammad Mahdi Moeini Manesh
- MEMS Lab, School of Electrical
and Computer Engineering, College of Engineering, University of Tehran, Tehran 1439957131, Iran
| | | | - Majid Badieirostami
- MEMS Lab, School of Electrical
and Computer Engineering, College of Engineering, University of Tehran, Tehran 1439957131, Iran
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3
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Zheng L, Hart N, Zeng Y. Micro-/nanoscale robotics for chemical and biological sensing. LAB ON A CHIP 2023; 23:3741-3767. [PMID: 37496448 PMCID: PMC10530003 DOI: 10.1039/d3lc00404j] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/28/2023]
Abstract
The field of micro-/nanorobotics has attracted extensive interest from a variety of research communities and witnessed enormous progress in a broad array of applications ranging from basic research to global healthcare and to environmental remediation and protection. In particular, micro-/nanoscale robots provide an enabling platform for the development of next-generation chemical and biological sensing modalities, owing to their unique advantages as programmable, self-sustainable, and/or autonomous mobile carriers to accommodate and promote physical and chemical processes. In this review, we intend to provide an overview of the state-of-the-art development in this area and share our perspective in the future trend. This review starts with a general introduction of micro-/nanorobotics and the commonly used methods for propulsion of micro-/nanorobots in solution, along with the commonly used methods in their fabrication. Next, we comprehensively summarize the current status of the micro/nanorobotic research in relevance to chemical and biological sensing (e.g., motion-based sensing, optical sensing, and electrochemical sensing). Following that, we provide an overview of the primary challenges currently faced in the micro-/nanorobotic research. Finally, we conclude this review by providing our perspective detailing the future application of soft robotics in chemical and biological sensing.
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Affiliation(s)
- Liuzheng Zheng
- Department of Chemistry, University of Florida, Gainesville, Florida, 32611, USA.
| | - Nathan Hart
- Department of Chemistry, University of Florida, Gainesville, Florida, 32611, USA.
| | - Yong Zeng
- Department of Chemistry, University of Florida, Gainesville, Florida, 32611, USA.
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Sarcina L, Scandurra C, Di Franco C, Caputo M, Catacchio M, Bollella P, Scamarcio G, Macchia E, Torsi L. A stable physisorbed layer of packed capture antibodies for high-performance sensing applications. JOURNAL OF MATERIALS CHEMISTRY. C 2023; 11:9093-9106. [PMID: 37457868 PMCID: PMC10341389 DOI: 10.1039/d3tc01123b] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/30/2023] [Accepted: 05/10/2023] [Indexed: 07/18/2023]
Abstract
Antibody physisorption at a solid interface is a very interesting phenomenon that has important effects on applications such as the development of novel biomaterials and the rational design and fabrication of high-performance biosensors. The strategy selected to immobilize biorecognition elements can determine the performance level of a device and one of the simplest approaches is physical adsorption, which is cost-effective, fast, and compatible with printing techniques as well as with green-chemistry processes. Despite its huge advantages, physisorption is very seldom adopted, as there is an ingrained belief that it does not lead to high performance because of its lack of uniformity and long-term stability, which, however, have never been systematically investigated, particularly for bilayers of capture antibodies. Herein, the homogeneity and stability of an antibody layer against SARS-CoV-2-Spike1 (S1) protein physisorbed onto a gold surface have been investigated by means of multi-parametric surface plasmon resonance (MP-SPR). A surface coverage density of capture antibodies as high as (1.50 ± 0.06) × 1012 molecules per cm-2 is measured, corresponding to a thickness of 12 ± 1 nm. This value is compatible with a single monolayer of homogeneously deposited antibodies. The effect of the ionic strength (is) of the antibody solution in controlling physisorption of the protein was thoroughly investigated, demonstrating an enhancement in surface coverage at lower ionic strength. An atomic force microscopy (AFM) investigation shows a globular structure attributed to is-related aggregations of antibodies. The long-term stability over two weeks of the physisorbed proteins was also assessed. High-performance sensing was proven by evaluating figures of merit, such as the limit of detection (2 nM) and the selectivity ratio between a negative control and the sensing experiment (0.04), which is the best reported performance for an SPR S1 protein assay. These figures of merit outmatch those measured with more sophisticated biofunctionalization procedures involving chemical bonding of the capture antibodies to the gold surface. The present study opens up interesting new pathways toward the achievement of a cost-effective and scalable biofunctionalization protocol, which could guarantee the prolonged stability of the biolayer and easy handling of the biosensing system.
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Affiliation(s)
- Lucia Sarcina
- Dipartimento di Chimica, Università degli Studi di Bari Aldo Moro, Via E. Orabona 4 70125 Bari Italy
| | - Cecilia Scandurra
- Dipartimento di Chimica, Università degli Studi di Bari Aldo Moro, Via E. Orabona 4 70125 Bari Italy
| | - Cinzia Di Franco
- CNR - Institute of Photonics and Nanotechnologies 70126 Bari Italy
| | - Mariapia Caputo
- Dipartimento di Farmacia-Scienze del Farmaco, Università degli Studi di Bari Aldo Moro 70126 Bari Italy
| | - Michele Catacchio
- Dipartimento di Farmacia-Scienze del Farmaco, Università degli Studi di Bari Aldo Moro 70126 Bari Italy
| | - Paolo Bollella
- Dipartimento di Chimica, Università degli Studi di Bari Aldo Moro, Via E. Orabona 4 70125 Bari Italy
- CSGI (Centre for Colloid and Surface Science), Via E. Orabona 4 70125 Bari Italy
| | - Gaetano Scamarcio
- Dipartimento Interateneo di Fisica "M. Merlin", Università degli Studi di Bari Aldo Moro 70126 Bari Italy
- CSGI (Centre for Colloid and Surface Science), Via E. Orabona 4 70125 Bari Italy
| | - Eleonora Macchia
- Dipartimento di Farmacia-Scienze del Farmaco, Università degli Studi di Bari Aldo Moro 70126 Bari Italy
- CSGI (Centre for Colloid and Surface Science), Via E. Orabona 4 70125 Bari Italy
- The Faculty of Science and Engineering, Åbo Akademi University 20500 Turku Finland
| | - Luisa Torsi
- Dipartimento di Chimica, Università degli Studi di Bari Aldo Moro, Via E. Orabona 4 70125 Bari Italy
- CSGI (Centre for Colloid and Surface Science), Via E. Orabona 4 70125 Bari Italy
- The Faculty of Science and Engineering, Åbo Akademi University 20500 Turku Finland
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5
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Dief EM, Low PJ, Díez-Pérez I, Darwish N. Advances in single-molecule junctions as tools for chemical and biochemical analysis. Nat Chem 2023; 15:600-614. [PMID: 37106094 DOI: 10.1038/s41557-023-01178-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2021] [Accepted: 03/02/2023] [Indexed: 04/29/2023]
Abstract
The development of miniaturized electronics has led to the design and construction of powerful experimental platforms capable of measuring electronic properties to the level of single molecules, along with new theoretical concepts to aid in the interpretation of the data. A new area of activity is now emerging concerned with repurposing the tools of molecular electronics for applications in chemical and biological analysis. Single-molecule junction techniques, such as the scanning tunnelling microscope break junction and related single-molecule circuit approaches have a remarkable capacity to transduce chemical information from individual molecules, sampled in real time, to electrical signals. In this Review, we discuss single-molecule junction approaches as emerging analytical tools for the chemical and biological sciences. We demonstrate how these analytical techniques are being extended to systems capable of probing chemical reaction mechanisms. We also examine how molecular junctions enable the detection of RNA, DNA, and traces of proteins in solution with limits of detection at the zeptomole level.
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Affiliation(s)
- Essam M Dief
- School of Molecular and Life Sciences, Curtin University, Bentley, Western Australia, Australia
| | - Paul J Low
- School of Molecular Sciences, University of Western Australia, Crawley, Western Australia, Australia
| | - Ismael Díez-Pérez
- Department of Chemistry, Faculty of Natural & Mathematical Sciences, King's College London, London, UK
| | - Nadim Darwish
- School of Molecular and Life Sciences, Curtin University, Bentley, Western Australia, Australia.
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6
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pH-Regulated Strategy and Mechanism of Antibody Orientation on Magnetic Beads for Improving Capture Performance of Staphylococcus Species. Foods 2022; 11:foods11223599. [PMID: 36429188 PMCID: PMC9689862 DOI: 10.3390/foods11223599] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2022] [Revised: 11/04/2022] [Accepted: 11/09/2022] [Indexed: 11/16/2022] Open
Abstract
Immunomagnetic beads (IMBs) have been widely used to capture and isolate target pathogens from complex food samples. The orientation of the antibody immobilized on the surface of magnetic beads (MBs) is closely related to the effective recognition with an antigen. We put forward an available strategy to orient the antibody on the surface of MBs by changing the charged amino group ratio of the reactive amino groups at optimal pH value. Quantum dots labeling antigen assay, antigen-binding fragment (Fab) accessibility assay and lysine mimicking were used for the first time to skillfully illustrate the antibody orientation mechanism. This revealed that the positively charged ε-NH2 group of lysine on the Fc relative to the uncharged amino terminus on Fab was preferentially adsorbed on the surface of MBs with a negatively charged group at pH 8.0, resulting in antigen binding sites of antibody fully exposed. This study contributes to the understanding of the antibody orientation on the surface of MBs and the potential application of IMBs in the separation and detection of pathogenic bacteria in food samples.
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7
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Kim HJ, Park D, Park Y, Kim DH, Kim J. Electric-Field-Mediated In-Sensor Alignment of Antibody's Orientation to Enhance the Antibody-Antigen Binding for Ultrahigh Sensitivity Sensors. NANO LETTERS 2022; 22:6537-6544. [PMID: 35900218 DOI: 10.1021/acs.nanolett.2c01584] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Applying an electric-field (E-field) during antibody immobilization aligns the orientation of the antibody on the biosensor surface, thereby enhancing the binding probability between the antibody and antigen and maximizing the sensitivity of the biosensor. In this study, a biosensor with enhanced antibody-antigen binding probability was developed using the alignment of polar antibodies (immunoglobulin G [IgG]) under an E-field applied inside the interdigitated electrodes. The optimal alignment condition was first theoretically calculated and then experimentally confirmed by comparing the impedance change before and after the alignment of IgG (a purified anti-β-amyloid antibody). With the optimized condition, the impedance change of the biosensor was maximized because of the alignment of IgG orientation on the sensor surface; the detection sensitivity of the antigen amyloid-beta 1-42 was also maximized. The E-field-based in-sensor alignment of antibodies is an easy and effective method for enhancing biosensor sensitivity.
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Affiliation(s)
- Hye Jin Kim
- Center for Nanoparticle Research, Institute for Basic Science (IBS), Seoul 08826, Republic of Korea
- Institute of Chemical Processes (ICP), Seoul National University, Seoul 08826, Republic of Korea
| | - Dongsung Park
- Department of Clinical Pharmacology and Therapeutics, College of Medicine, Kyung Hee University, Seoul 02447, Republic of Korea
| | - Yejin Park
- Department of Medical Biotechnology, College of Life Science and Biotechnology, Dongguk University, Seoul 04620, Republic of Korea
| | - Dae-Hyeong Kim
- Center for Nanoparticle Research, Institute for Basic Science (IBS), Seoul 08826, Republic of Korea
- Department of Materials Science and Engineering, Seoul National University, Seoul 08826, Republic of Korea
| | - Jinsik Kim
- Department of Medical Biotechnology, College of Life Science and Biotechnology, Dongguk University, Seoul 04620, Republic of Korea
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8
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Urzúa SA, Sauceda-Oloño PY, García CD, Cooper CD. Predicting the Orientation of Adsorbed Proteins Steered with Electric Fields Using a Simple Electrostatic Model. J Phys Chem B 2022; 126:5231-5240. [PMID: 35819287 DOI: 10.1021/acs.jpcb.2c03118] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Under the most common experimental conditions, the adsorption of proteins to solid surfaces is a spontaneous process that leads to a rather compact layer of randomly oriented molecules. However, controlling such orientation is critically important for the development of catalytic surfaces. In this regard, the use of electric fields is one of the most promising alternatives. Our work is motivated by experimental observations that show important differences in catalytic activity of a trypsin-covered surface, which depended on the applied potential during the adsorption. Even though adsorption results from the combination of several processes, we were able to determine that (under the selected conditions) mean-field electrostatics play a dominant role, determining the orientation and yielding a difference in catalytic activity. We simulated the electrostatic potential numerically, using an implicit-solvent model based on the linearized Poisson-Boltzmann equation. This was implemented in an extension of the code PyGBe that included an external electric field, and rendered the electrostatic component of the solvation free energy. Our model (extensions available at the Github repository) allowed estimating the overall affinity of the protein with the surface, and their most likely orientation as a function of the potential applied. Our results show that the active sites of trypsin are, on average, more exposed when the electric field is negative, which agrees with the experimental results of catalytic activity, and confirm the premise that electrostatic interactions can be used to control the orientation of adsorbed proteins.
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Affiliation(s)
- Sergio A Urzúa
- Department of Mechanical Engineering, Universidad Técnica Federico Santa María, Valparaíso, 2390123, Chile
| | - Perla Y Sauceda-Oloño
- Department of Chemistry, Clemson University, Clemson, South Carolina 29634, United States
| | - Carlos D García
- Department of Chemistry, Clemson University, Clemson, South Carolina 29634, United States
| | - Christopher D Cooper
- Department of Mechanical Engineering, Universidad Técnica Federico Santa María, Valparaíso, 2390123, Chile.,Centro Científico Tecnológico de Valparaíso, Valparaíso, 2390123, Chile
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9
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Sarcina L, Viola F, Modena F, Picca RA, Bollella P, Di Franco C, Cioffi N, Caironi M, Österbacka R, Esposito I, Scamarcio G, Torsi L, Torricelli F, Macchia E. A large-area organic transistor with 3D-printed sensing gate for noninvasive single-molecule detection of pancreatic mucinous cyst markers. Anal Bioanal Chem 2022; 414:5657-5669. [PMID: 35410389 PMCID: PMC9242948 DOI: 10.1007/s00216-022-04040-4] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2021] [Revised: 03/05/2022] [Accepted: 03/23/2022] [Indexed: 02/07/2023]
Abstract
Early diagnosis in a premalignant (or pre-invasive) state represents the only chance for cure in neoplastic diseases such as pancreatic-biliary cancer, which are otherwise detected at later stages and can only be treated using palliative approaches, with no hope for a cure. Screening methods for the purpose of secondary prevention are not yet available for these cancers. Current diagnostic methods mostly rely on imaging techniques and conventional cytopathology, but they do not display adequate sensitivity to allow valid early diagnosis. Next-generation sequencing can be used to detect DNA markers down to the physical limit; however, this assay requires labeling and is time-consuming. The additional determination of a protein marker that is a predictor of aggressive behavior is a promising innovative approach, which holds the potential to improve diagnostic accuracy. Moreover, the possibility to detect biomarkers in blood serum offers the advantage of a noninvasive diagnosis. In this study, both the DNA and protein markers of pancreatic mucinous cysts were analyzed in human blood serum down to the single-molecule limit using the SiMoT (single-molecule assay with a large transistor) platform. The SiMoT device proposed herein, which exploits an inkjet-printed organic semiconductor on plastic foil, comprises an innovative 3D-printed sensing gate module, consisting of a truncated cone that protrudes from a plastic substrate and is compatible with standard ELISA wells. This 3D gate concept adds tremendous control over the biosensing system stability, along with minimal consumption of the capturing molecules and body fluid samples. The 3D sensing gate modules were extensively characterized from both a material and electrical perspective, successfully proving their suitability as detection interfaces for biosensing applications. KRAS and MUC1 target molecules were successfully analyzed in diluted human blood serum with the 3D sensing gate functionalized with b-KRAS and anti-MUC1, achieving a limit of detection of 10 zM and 40 zM, respectively. These limits of detection correspond to (1 ± 1) KRAS and (2 ± 1) MUC1 molecules in the 100 μL serum sample volume. This study provides a promising application of the 3D SiMoT platform, potentially facilitating the timely, noninvasive, and reliable identification of pancreatic cancer precursor cysts.
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Affiliation(s)
- Lucia Sarcina
- Dipartimento di Chimica, Università degli Studi di Bari Aldo Moro, Via E. Orabona 4, 70125, Bari, Italy
| | - Fabrizio Viola
- Center for Nano Science and Technology@PoliMi, Istituto Italiano di Tecnologia, Via Pascoli 70/3, 20133, Milan, Italy
| | - Francesco Modena
- Center for Nano Science and Technology@PoliMi, Istituto Italiano di Tecnologia, Via Pascoli 70/3, 20133, Milan, Italy
- Dipartimento di Elettronica, Infomazione e Bioingegneria; Politecnico di Milano, Milano, Italy
| | - Rosaria Anna Picca
- Dipartimento di Chimica, Università degli Studi di Bari Aldo Moro, Via E. Orabona 4, 70125, Bari, Italy
- CSGI (Centre for Colloid and Surface Science), Via E. Orabona 4, 70125, Bari, Italy
| | - Paolo Bollella
- Dipartimento di Chimica, Università degli Studi di Bari Aldo Moro, Via E. Orabona 4, 70125, Bari, Italy
| | - Cinzia Di Franco
- Dipartimento di Chimica, Università degli Studi di Bari Aldo Moro, Via E. Orabona 4, 70125, Bari, Italy
| | - Nicola Cioffi
- Dipartimento di Chimica, Università degli Studi di Bari Aldo Moro, Via E. Orabona 4, 70125, Bari, Italy
- CSGI (Centre for Colloid and Surface Science), Via E. Orabona 4, 70125, Bari, Italy
| | - Mario Caironi
- Center for Nano Science and Technology@PoliMi, Istituto Italiano di Tecnologia, Via Pascoli 70/3, 20133, Milan, Italy
| | - Ronald Österbacka
- The Faculty of Science and Engineering, Åbo Akademi University, Porthaninkatu 3, FI-20500, Turku, Finland
| | - Irene Esposito
- Institute of Pathology, Heinrich-Heine University and University Hospital of Düsseldorf, 40225, Duesseldorf, Germany
| | - Gaetano Scamarcio
- Dipartimento Interateneo di Fisica "M. Merlin", Università degli Studi di Bari "Aldo Moro", 70125, Bari, Italy
| | - Luisa Torsi
- Dipartimento di Chimica, Università degli Studi di Bari Aldo Moro, Via E. Orabona 4, 70125, Bari, Italy
- CSGI (Centre for Colloid and Surface Science), Via E. Orabona 4, 70125, Bari, Italy
- The Faculty of Science and Engineering, Åbo Akademi University, Porthaninkatu 3, FI-20500, Turku, Finland
| | - Fabrizio Torricelli
- Dipartimento Ingegneria dell'Informazione, Università degli Studi di Brescia, 25123, Brescia, Italy.
| | - Eleonora Macchia
- CSGI (Centre for Colloid and Surface Science), Via E. Orabona 4, 70125, Bari, Italy.
- The Faculty of Science and Engineering, Åbo Akademi University, Porthaninkatu 3, FI-20500, Turku, Finland.
- Dipartimento di Farmacia-Scienze del Farmaco, Università degli Studi di Bari Aldo Moro, Via E. Orabona 4, 70125, Bari, Italy.
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10
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Lou D, Fan L, Jiang T, Zhang Y. Advances in nanoparticle‐based lateral flow immunoassay for point‐of‐care testing. VIEW 2022. [DOI: 10.1002/viw.20200125] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023] Open
Affiliation(s)
- Doudou Lou
- Jiangsu Institute for Food and Drug Control 17 Kangwen Road Nanjing P. R. China
| | - Lin Fan
- School of Geographic and Biologic Information Nanjing University of Posts and Telecommunications Nanjing P. R. China
| | - Tao Jiang
- Army of Reserve Infantry Division in Heilongjiang Province Harbin Heilongjiang Province P. R. China
| | - Yu Zhang
- State Key Laboratory of Bioelectronics Jiangsu Key Laboratory for Biomaterials and Devices School of Biological Science and Medical Engineering & Collaborative Innovation Center of Suzhou Nano Science and Technology Southeast University Nanjing P. R. China
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11
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Martí D, Martín-Martínez E, Torras J, Bertran O, Turon P, Alemán C. In silico antibody engineering for SARS-CoV-2 detection. Comput Struct Biotechnol J 2021; 19:5525-5534. [PMID: 34642596 PMCID: PMC8496930 DOI: 10.1016/j.csbj.2021.10.010] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2021] [Revised: 10/06/2021] [Accepted: 10/06/2021] [Indexed: 12/11/2022] Open
Abstract
Engineered immunoglobulin-G molecules (IgGs) are of wide interest for the development of detection elements in protein-based biosensors with clinical applications. The strategy usually employed for the de novo design of such engineered IgGs consists on merging fragments of the three-dimensional structure of a native IgG, which is immobilized on the biosensor surface, and of an antibody with an exquisite target specificity and affinity. In this work conventional and accelerated classical molecular dynamics (cMD and aMD, respectively) simulations have been used to propose two IgG-like antibodies for COVID-19 detection. More specifically, the crystal structure of the IgG1 B12 antibody, which inactivates the human immunodeficiency virus-1, has been merged with the structure of the antibody CR3022 Fab tightly bounded to SARS-CoV-2 receptor-binding domain (RBD) and the structure of the S309 antibody Fab fragment complexed with SARS-CoV-2 RBD. The two constructed antibodies, named IgG1-CR3022 and IgG1-S309, respectively, have been immobilized on a stable gold surface through a linker. Analyses of the influence of both the merging strategy and the substrate on the stability of the two constructs indicate that the IgG1-S309 antibody better preserves the neutralizing structure than the IgG1-CR3022 one. Overall, results indicate that the IgG1-S309 is appropriated for the generation of antibody based sensors for COVID-19 diagnosis.
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Affiliation(s)
- Didac Martí
- Departament d'Enginyeria Química, EEBE, Universitat Politècnica de Catalunya, C/ Eduard Maristany, 10-14, Ed. I2, 08019 Barcelona, Spain
| | - Eduard Martín-Martínez
- Departament d'Enginyeria Química, EEBE, Universitat Politècnica de Catalunya, C/ Eduard Maristany, 10-14, Ed. I2, 08019 Barcelona, Spain
| | - Juan Torras
- Departament d'Enginyeria Química, EEBE, Universitat Politècnica de Catalunya, C/ Eduard Maristany, 10-14, Ed. I2, 08019 Barcelona, Spain.,Barcelona Research Center in Multiscale Science and Engineering, Universitat Politècnica de Catalunya, C/ Eduard Maristany, 10-14, 08019 Barcelona, Spain
| | - Oscar Bertran
- Departament de Física EETAC, Universitat Politècnica de Catalunya, c/ Esteve Terrades, 7, 08860 Castelldefels, Spain
| | - Pau Turon
- B. Braun Surgical, S.A.U. Carretera de Terrassa 121, 08191 Rubí (Barcelona), Spain
| | - Carlos Alemán
- Departament d'Enginyeria Química, EEBE, Universitat Politècnica de Catalunya, C/ Eduard Maristany, 10-14, Ed. I2, 08019 Barcelona, Spain.,Barcelona Research Center in Multiscale Science and Engineering, Universitat Politècnica de Catalunya, C/ Eduard Maristany, 10-14, 08019 Barcelona, Spain.,Institute for Bioengineering of Catalonia (IBEC), The Barcelona Institute of Science and Technology, Baldiri Reixac 10-12, 08028 Barcelona, Spain
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12
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Liu H, Yang A, Song J, Wang N, Lam P, Li Y, Law HKW, Yan F. Ultrafast, sensitive, and portable detection of COVID-19 IgG using flexible organic electrochemical transistors. SCIENCE ADVANCES 2021; 7:eabg8387. [PMID: 34524851 PMCID: PMC8443172 DOI: 10.1126/sciadv.abg8387] [Citation(s) in RCA: 77] [Impact Index Per Article: 25.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
The outbreak of COVID-19 and its continued spread have seriously threatened public health. Antibody testing is essential for infection diagnosis, seroepidemiological analysis, and vaccine evaluation. However, convenient, fast, and accurate antibody detection remains a challenge in this protracted battle. Here, we report an ultrafast, low-cost, label-free, and portable SARS-CoV-2 immunoglobulin G (IgG) detection platform based on organic electrochemical transistors (OECTs), which can be remotely controlled by a mobile phone. To enable faster detection, voltage pulses are applied on the gate electrode of the OECT to accelerate binding between the antibody and antigen. By optimizing ion concentrations and pH values of test solutions, we realize specific detection of SARS-CoV-2 IgG in several minutes with a detectable region from 10 fM to 100 nM, which encompasses the range of serum SARS-CoV-2 IgG levels in humans. These portable sensors show promise for use in diagnosis and prognosis of COVID-19.
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Affiliation(s)
- Hong Liu
- Department of Applied Physics, The Hong Kong Polytechnic University, Hung Hom, 999077 Kowloon, Hong Kong
| | - Anneng Yang
- Department of Applied Physics, The Hong Kong Polytechnic University, Hung Hom, 999077 Kowloon, Hong Kong
| | - Jiajun Song
- Department of Applied Physics, The Hong Kong Polytechnic University, Hung Hom, 999077 Kowloon, Hong Kong
| | - Naixiang Wang
- Department of Applied Physics, The Hong Kong Polytechnic University, Hung Hom, 999077 Kowloon, Hong Kong
| | - Puiyiu Lam
- Department of Applied Physics, The Hong Kong Polytechnic University, Hung Hom, 999077 Kowloon, Hong Kong
| | - Yuenling Li
- Department of Applied Physics, The Hong Kong Polytechnic University, Hung Hom, 999077 Kowloon, Hong Kong
| | - Helen Ka-wai Law
- Department of Health Technology and Informatics Faculty of Health and Social Sciences, The Hong Kong Polytechnic University, Hung Hom, 999077 Kowloon, Hong Kong
| | - Feng Yan
- Department of Applied Physics, The Hong Kong Polytechnic University, Hung Hom, 999077 Kowloon, Hong Kong
- Corresponding author.
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13
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Noriega R. Measuring the Multiscale Dynamics, Structure, and Function of Biomolecules at Interfaces. J Phys Chem B 2021; 125:5667-5675. [PMID: 34042455 DOI: 10.1021/acs.jpcb.1c01546] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The individual and collective structure and properties of biomolecules can change dramatically when they are localized at an interface. However, the small spatial extent of interfacial regions poses challenges to the detailed characterization of multiscale processes that dictate the structure and function of large biological units such as peptides, proteins, or nucleic acids. This Perspective surveys a broad set of tools that provide new opportunities to probe complex, dynamic interfaces across the vast range of temporal regimes that connect molecular-scale events to macroscopic observables. An emphasis is placed on the integration over multiple time scales, the use of complementary techniques, and the incorporation of external stimuli to control interfacial properties with spatial, temporal, and chemical specificity.
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Affiliation(s)
- Rodrigo Noriega
- Department of Chemistry, University of Utah, Salt Lake City, Utah 84112, United States
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14
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Mahmoodi SR, Xie P, Zachs DP, Peterson EJ, Graham RS, Kaiser CRW, Lim HH, Allen MG, Javanmard M. Single-step label-free nanowell immunoassay accurately quantifies serum stress hormones within minutes. SCIENCE ADVANCES 2021; 7:eabf4401. [PMID: 34193414 PMCID: PMC8245048 DOI: 10.1126/sciadv.abf4401] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/28/2020] [Accepted: 05/18/2021] [Indexed: 05/14/2023]
Abstract
A non-faradaic label-free cortisol sensing platform is presented using a nanowell array design, in which the two probe electrodes are integrated within the nanowell structure. Rapid and low volume (≤5 μl) sensing was realized through functionalizing nanoscale volume wells with antibodies and monitoring the real-time binding events. A 28-well plate biochip was built on a glass substrate by sequential deposition, patterning, and etching steps to create a stack nanowell array sensor with an electrode gap of 40 nm. Sensor response for cortisol concentrations between 1 and 15 μg/dl in buffer solution was recorded, and a limit of detection of 0.5 μg/dl was achieved. Last, 65 human serum samples were collected to compare the response from human serum samples with results from the standard enzyme-linked immunosorbent assay (ELISA). These results confirm that nanowell array sensors could be a promising platform for point-of-care testing, where real-time, laboratory-quality diagnostic results are essential.
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Affiliation(s)
| | - Pengfei Xie
- Rutgers University, Piscataway, NJ 08854, USA
| | | | | | | | | | - Hubert H Lim
- University of Minnesota, Minneapolis, MN 55455, USA
| | - Mark G Allen
- University of Pennsylvania, Philadelphia, PA 19104, USA
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15
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Gopinath A, Thachuk C, Mitskovets A, Atwater HA, Kirkpatrick D, Rothemund PWK. Absolute and arbitrary orientation of single-molecule shapes. Science 2021; 371:371/6531/eabd6179. [DOI: 10.1126/science.abd6179] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2020] [Accepted: 12/14/2020] [Indexed: 11/02/2022]
Abstract
DNA origami is a modular platform for the combination of molecular and
colloidal components to create optical, electronic, and biological devices.
Integration of such nanoscale devices with microfabricated connectors and circuits
is challenging: Large numbers of freely diffusing devices must be fixed at desired
locations with desired alignment. We present a DNA origami molecule whose energy
landscape on lithographic binding sites has a unique maximum. This property
enabled device alignment within 3.2° on silica surfaces. Orientation was absolute
(all degrees of freedom were specified) and arbitrary (the orientation of every
molecule was independently specified). The use of orientation to optimize device
performance was shown by aligning fluorescent emission dipoles within
microfabricated optical cavities. Large-scale integration was demonstrated with an
array of 3456 DNA origami with 12 distinct orientations that indicated the
polarization of excitation light.
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Affiliation(s)
- Ashwin Gopinath
- Department of Bioengineering, California Institute of Technology, Pasadena, CA 91125, USA
- Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
| | - Chris Thachuk
- Department of Computing and Mathematical Science, California Institute of Technology, Pasadena, CA 91125, USA
- Paul G. Allen School of Computer Science and Engineering, University of Washington, Seattle, WA 98195, USA
| | - Anya Mitskovets
- Department of Applied Physics and Materials Science, California Institute of Technology, Pasadena, CA 91125, USA
| | - Harry A. Atwater
- Department of Applied Physics and Materials Science, California Institute of Technology, Pasadena, CA 91125, USA
| | - David Kirkpatrick
- Department of Computer Science, University of British Columbia, Vancouver, British Columbia, Canada
| | - Paul W. K. Rothemund
- Department of Bioengineering, California Institute of Technology, Pasadena, CA 91125, USA
- Department of Computing and Mathematical Science, California Institute of Technology, Pasadena, CA 91125, USA
- Computation and Neural Systems, California Institute of Technology, Pasadena, CA 91125, USA
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16
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Kim JH, Lee SY, Lee SK. Development of novel lab-on-a-chip platform for high-throughput radioimmunoassay. Appl Radiat Isot 2020; 168:109526. [PMID: 33316629 DOI: 10.1016/j.apradiso.2020.109526] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2020] [Revised: 10/27/2020] [Accepted: 11/16/2020] [Indexed: 10/22/2022]
Abstract
Radioimmunoassay (RIA) is an extremely specific and a highly sensitive type of immunoassay, but the long incubation time and generation of radioactive wastes limit the use of RIA. To complement these disadvantages of RIA, we suggest an advanced type of RIA based on a lab-on-a-chip (LOC) platform: μ-RIA. We designed a microfluidic chip for RIA and optimized the procedures of μ-RIA analysis, including surface modification, immunoreaction time, and washing. Based on the optimized conditions, we conducted a radioimmunoassay on the μ-RIA platform using a commercial RIA kit. With the μ-RIA, 5 min are adequate for analysis. The amount of reagent consumption is significantly reduced compared with conventional RIA. The standard curve with R2 = 0.9951 shows that we can quantitatively evaluate the amount of antigen present in unknown samples. We show the applicability of μ-RIA for the analysis of biomolecules and the potential of μ-RIA to be a novel platform for high-throughput analysis.
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Affiliation(s)
- Jin-Hee Kim
- Neutron and Radioisotope Application Research Division, Korea Atomic Energy Research Institute, 111, Daedeok-daero 989beon-gil, Yuseong-gu, Daejeon, 34057, Republic of Korea; School of Architectural, Civil, Environmental and Energy Engineering, Kyungpook National University, 80, Daehak-ro, Buk-gu, Daegu, 41566, Republic of Korea
| | - So-Young Lee
- Neutron and Radioisotope Application Research Division, Korea Atomic Energy Research Institute, 111, Daedeok-daero 989beon-gil, Yuseong-gu, Daejeon, 34057, Republic of Korea
| | - Seung-Kon Lee
- Neutron and Radioisotope Application Research Division, Korea Atomic Energy Research Institute, 111, Daedeok-daero 989beon-gil, Yuseong-gu, Daejeon, 34057, Republic of Korea.
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17
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Etty MC, D'Auria S, Shankar S, Salmieri S, Coutu J, Baraketi A, Jamshidan M, Fraschini C, Lacroix M. New immobilization method of anti-PepD monoclonal antibodies for the detection of Listeria monocytogenes p60 protein – Part A: Optimization of a crosslinked film support based on chitosan and cellulose nanocrystals (CNC). REACT FUNCT POLYM 2020. [DOI: 10.1016/j.reactfunctpolym.2019.06.021] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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18
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Hu W, He X, Bai Y, Zheng L, Hu Y, Wang P, Liu X, Jia K. Synthesis and self-assembly of polyethersulfone-based amphiphilic block copolymers as microparticles for suspension immunosensors. Polym Chem 2020. [DOI: 10.1039/c9py01701a] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Polyethersulfone (PES) based amphiphilic block copolymer has been synthesized and transformed into immunological microparticles via confined emulsion self-assembly and surface biomodification, opens the in-vitro diagnostic application of PES.
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Affiliation(s)
- Weibin Hu
- Research Branch of Advanced Functional Materials
- School of Materials and Energy
- University of Electronic Science and Technology of China
- 610054 Chengdu
- China
| | - Xiaohong He
- Research Branch of Advanced Functional Materials
- School of Materials and Energy
- University of Electronic Science and Technology of China
- 610054 Chengdu
- China
| | - Yun Bai
- Research Branch of Advanced Functional Materials
- School of Materials and Energy
- University of Electronic Science and Technology of China
- 610054 Chengdu
- China
| | - Li Zheng
- State Key Laboratory of Biotherapy
- Sichuan University
- 610051 Chengdu
- China
| | - Yiguo Hu
- State Key Laboratory of Biotherapy
- Sichuan University
- 610051 Chengdu
- China
| | - Pan Wang
- School of Mechanical Engineering
- Chengdu University
- 610106 Chengdu
- China
| | - Xiaobo Liu
- Research Branch of Advanced Functional Materials
- School of Materials and Energy
- University of Electronic Science and Technology of China
- 610054 Chengdu
- China
| | - Kun Jia
- Research Branch of Advanced Functional Materials
- School of Materials and Energy
- University of Electronic Science and Technology of China
- 610054 Chengdu
- China
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19
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Etty MC, D'Auria S, Shankar S, Salmieri S, Fraschini C, Lacroix M. New immobilization method of anti-PepD monoclonal antibodies for the detection of Listeria monocytogenes p60 protein – Part B: Rapid and specific sandwich ELISA using antibodies immobilized on a chitosan/CNC film support. REACT FUNCT POLYM 2019. [DOI: 10.1016/j.reactfunctpolym.2019.104317] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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20
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Song X, Fu Q, Bu Y. Nonlinear Migration Dynamics of Excess Electrons along Linear Oligopeptides Controlled by an Applied Electric Field. Chemphyschem 2019; 20:1497-1507. [PMID: 30912277 DOI: 10.1002/cphc.201900149] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2019] [Revised: 03/16/2019] [Indexed: 11/06/2022]
Abstract
Migration of an excess electron along linear oligopeptides governed by the external electric field (Eex ) which is against the inner dipole electric field is theoretically investigated, including the effects of Eex on the structural and electronic properties of electron migration. Two structural properties including electron-binding ability and the dipole moment of linear oligopeptides are sensitive to the Eex values and can be largely modulated by Eex due to the competition of Eex and the inner electric field and electron transfer caused by Eex . In the case of low Eex values, two structural properties decrease slightly, while for high Eex values, the electron-binding ability continually increases strongly, with dipole moments firstly increasing significantly and then increasing more slowly at higher Eex . Additionally, linear oligopeptides of different chain lengths influence the modulation extent of Eex and the longer the chain length is, the more sensitive modulation of Eex is. In addition, electronic properties represented by electron spin densities and singly occupied molecular orbital distributions vary with Eex intensities, leading to an unusual electron migration behavior. As Eex increases, an excess electron transfers from the N-terminus to the C-terminus and jumps over a neighboring dipole unit of two termini to other units, respectively, instead of transferring by means of a one-by-one dipole unit hopping mechanism. These findings not only promote a deeper understanding of the connection between Eex and structural and electronic properties of electron transfer behavior in peptides, but also provide a new insight into the modulation of electron migration along the oligopeptides.
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Affiliation(s)
- Xiufang Song
- School of Chemistry and Chemical Engineering, Shandong University, Jinan, 250100, People's Republic of China
| | - Qiang Fu
- School of Chemistry and Chemical Engineering, Shandong University, Jinan, 250100, People's Republic of China
| | - Yuxiang Bu
- School of Chemistry and Chemical Engineering, Shandong University, Jinan, 250100, People's Republic of China.,School of Chemistry and Chemical Engineering, Qufu Normal University, Qufu, 273165, People's Republic of China
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21
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Abstract
Hydrogenated nanocrystalline silicon, while being non-charged and non-polar, could be an ideal candidate for the non-covalent and orientation-controlled immobilization of biomolecules thanks to local electric fields around nanocrystals. To that effect, the adsorption of bovine serum albumin on substrates with different densities of nanocrystals, revealed by Raman spectroscopy and X-ray diffraction, was studied using infrared spectroscopy and atomic force microscopy. It was found that the protein–surface interactions followed different mechanisms depending on the nanostructure at the surface: hydrophobic on the non-crystalline part of the surface and electrostatic around the crystalline part. These electrostatic interactions were driven by the electric fields that arose at the junction between crystalline and amorphous structures. These electric fields were found to be strong enough to interact with the amide dipoles, thereby reorienting the adsorbed protein molecules on this part of the surface. Nevertheless, the adsorbed proteins were found to be denatured, which was due to the surface chemistry, and not affected by the nanostructure.
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22
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Li J, Wu S, Kim E, Yan K, Liu H, Liu C, Dong H, Qu X, Shi X, Shen J, Bentley WE, Payne GF. Electrobiofabrication: electrically based fabrication with biologically derived materials. Biofabrication 2019; 11:032002. [PMID: 30759423 PMCID: PMC7025432 DOI: 10.1088/1758-5090/ab06ea] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
While conventional material fabrication methods focus on form and strength to achieve function, the fabrication of material systems for emerging life science applications will need to satisfy a more subtle set of requirements. A common goal for biofabrication is to recapitulate complex biological contexts (e.g. tissue) for applications that range from animal-on-a-chip to regenerative medicine. In these cases, the material systems will need to: (i) present appropriate surface functionalities over a hierarchy of length scales (e.g. molecular features that enable cell adhesion and topographical features that guide differentiation); (ii) provide a suite of mechanobiological cues that promote the emergence of native-like tissue form and function; and (iii) organize structure to control cellular ingress and molecular transport, to enable the development of an interconnected cellular community that is engaged in cell signaling. And these requirements are not likely to be static but will vary over time and space, which will require capabilities of the material systems to dynamically respond, adapt, heal and reconfigure. Here, we review recent advances in the use of electrically based fabrication methods to build material systems from biological macromolecules (e.g. chitosan, alginate, collagen and silk). Electrical signals are especially convenient for fabrication because they can be controllably imposed to promote the electrophoresis, alignment, self-assembly and functionalization of macromolecules to generate hierarchically organized material systems. Importantly, this electrically based fabrication with biologically derived materials (i.e. electrobiofabrication) is complementary to existing methods (photolithographic and printing), and enables access to the biotechnology toolbox (e.g. enzymatic-assembly and protein engineering, and gene expression) to offer exquisite control of structure and function. We envision that electrobiofabrication will emerge as an important platform technology for organizing soft matter into dynamic material systems that mimic biology's complexity of structure and versatility of function.
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Affiliation(s)
- Jinyang Li
- Institute for Bioscience and Biotechnology Research, University of Maryland, College Park, United States of America
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23
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Lou D, Ji L, Fan L, Ji Y, Gu N, Zhang Y. Antibody-Oriented Strategy and Mechanism for the Preparation of Fluorescent Nanoprobes for Fast and Sensitive Immunodetection. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2019; 35:4860-4867. [PMID: 30821462 DOI: 10.1021/acs.langmuir.9b00150] [Citation(s) in RCA: 48] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Nanoprobes have been widely used in biomedical engineering. However, antibodies are generally conjugated onto nanoparticles disorderly, which reduces their antigen recognition ability. The existing antibody orientation approaches are usually complex. Here, we developed and demonstrated a simple antibody-oriented strategy for the lateral flow immunoassay of cardiac troponin I by conjugating antibodies onto polystyrene nanospheres at the optimal pH. The binding amount and orientation of antibodies as well as the detection sensitivity were significantly improved. Although pH regulation is commonly used to optimize antibody conjugation, this paper illustrates the mechanism of its antibody orientation enhancement ability for the first time and reveals the important influences of the density, the charge distribution and hydrophilicity of the antibody, the control of the velocities of physical adsorption and chemical coupling, and other factors on antibody orientation. It is of great significance to understand and regulate antibody conjugation on the surface of micro- or nanospheres to construct high-performance probes for in vitro diagnosis applications.
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Affiliation(s)
- Doudou Lou
- State Key Laboratory of Bioelectronics, Jiangsu Key Laboratory for Biomaterials and Devices, School of Biological Science and Medical Engineering & Collaborative Innovation Center of Suzhou Nano Science and Technology , Southeast University , Nanjing 210096 , China
| | - Lu Ji
- State Key Laboratory of Bioelectronics, Jiangsu Key Laboratory for Biomaterials and Devices, School of Biological Science and Medical Engineering & Collaborative Innovation Center of Suzhou Nano Science and Technology , Southeast University , Nanjing 210096 , China
| | - Lin Fan
- State Key Laboratory of Bioelectronics, Jiangsu Key Laboratory for Biomaterials and Devices, School of Biological Science and Medical Engineering & Collaborative Innovation Center of Suzhou Nano Science and Technology , Southeast University , Nanjing 210096 , China
| | - Yongxin Ji
- Nanjing Nanoeast Biotech Co., LTD , Nanjing 211100 , China
| | - Ning Gu
- State Key Laboratory of Bioelectronics, Jiangsu Key Laboratory for Biomaterials and Devices, School of Biological Science and Medical Engineering & Collaborative Innovation Center of Suzhou Nano Science and Technology , Southeast University , Nanjing 210096 , China
| | - Yu Zhang
- State Key Laboratory of Bioelectronics, Jiangsu Key Laboratory for Biomaterials and Devices, School of Biological Science and Medical Engineering & Collaborative Innovation Center of Suzhou Nano Science and Technology , Southeast University , Nanjing 210096 , China
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24
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Macchia E, Manoli K, Holzer B, Di Franco C, Ghittorelli M, Torricelli F, Alberga D, Mangiatordi GF, Palazzo G, Scamarcio G, Torsi L. Single-molecule detection with a millimetre-sized transistor. Nat Commun 2018; 9:3223. [PMID: 30104563 PMCID: PMC6089965 DOI: 10.1038/s41467-018-05235-z] [Citation(s) in RCA: 100] [Impact Index Per Article: 16.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2018] [Accepted: 06/19/2018] [Indexed: 01/06/2023] Open
Abstract
Label-free single-molecule detection has been achieved so far by funnelling a large number of ligands into a sequence of single-binding events with few recognition elements host on nanometric transducers. Such approaches are inherently unable to sense a cue in a bulk milieu. Conceptualizing cells' ability to sense at the physical limit by means of highly-packed recognition elements, a millimetric sized field-effect-transistor is used to detect a single molecule. To this end, the gate is bio-functionalized with a self-assembled-monolayer of 1012 capturing anti-Immunoglobulin-G and is endowed with a hydrogen-bonding network enabling cooperative interactions. The selective and label-free single molecule IgG detection is strikingly demonstrated in diluted saliva while 15 IgGs are assayed in whole serum. The suggested sensing mechanism, triggered by the affinity binding event, involves a work-function change that is assumed to propagate in the gating-field through the electrostatic hydrogen-bonding network. The proposed immunoassay platform is general and can revolutionize the current approach to protein detection.
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Affiliation(s)
- Eleonora Macchia
- Dipartimento di Chimica, Università degli Studi di Bari "Aldo Moro", 70125 Bari, Italy
| | - Kyriaki Manoli
- Dipartimento di Chimica, Università degli Studi di Bari "Aldo Moro", 70125 Bari, Italy
| | - Brigitte Holzer
- Dipartimento di Chimica, Università degli Studi di Bari "Aldo Moro", 70125 Bari, Italy
| | - Cinzia Di Franco
- CNR, Istituto di Fotonica e Nanotecnologie, Sede di Bari, 70125 Bari, Italy
| | - Matteo Ghittorelli
- Dipartimento Ingegneria dell'Informazione, Università degli Studi di Brescia, 25123 Brescia, Italy
| | - Fabrizio Torricelli
- Dipartimento Ingegneria dell'Informazione, Università degli Studi di Brescia, 25123 Brescia, Italy
| | - Domenico Alberga
- Dipartimento di Farmacia, Scienze del Farmaco, Università degli Studi di Bari "Aldo Moro", 70125 Bari, Italy
| | - Giuseppe Felice Mangiatordi
- Dipartimento di Farmacia, Scienze del Farmaco, Università degli Studi di Bari "Aldo Moro", 70125 Bari, Italy
- Istituto Tumori IRCCS Giovanni Paolo II, Viale O. Flacco 65, 70124, Bari, Italy
| | - Gerardo Palazzo
- Dipartimento di Chimica, Università degli Studi di Bari "Aldo Moro", 70125 Bari, Italy
- CSGI (Centre for Colloid and Surface Science), 70125 Bari, Italy
| | - Gaetano Scamarcio
- CNR, Istituto di Fotonica e Nanotecnologie, Sede di Bari, 70125 Bari, Italy
- Dipartimento di Fisica "M. Merlin", Università degli Studi di Bari - "Aldo Moro", 70125 Bari, Italy
| | - Luisa Torsi
- Dipartimento di Chimica, Università degli Studi di Bari "Aldo Moro", 70125 Bari, Italy.
- CSGI (Centre for Colloid and Surface Science), 70125 Bari, Italy.
- The Faculty of Science and Engineering, Åbo Akademi University, 20500 Turku, Finland.
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25
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Svalova TS, Malysheva NN, Kozitsina AN. Structure of the receptor layer in electrochemical immunosensors. Modern trends and prospects of development. Russ Chem Bull 2018. [DOI: 10.1007/s11172-017-1951-0] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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26
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Martin LJ, Akhavan B, Bilek MMM. Electric fields control the orientation of peptides irreversibly immobilized on radical-functionalized surfaces. Nat Commun 2018; 9:357. [PMID: 29367659 PMCID: PMC5783936 DOI: 10.1038/s41467-017-02545-6] [Citation(s) in RCA: 55] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2017] [Accepted: 12/07/2017] [Indexed: 01/12/2023] Open
Abstract
Surface functionalization of an implantable device with bioactive molecules can overcome adverse biological responses by promoting specific local tissue integration. Bioactive peptides have advantages over larger protein molecules due to their robustness and sterilizability. Their relatively small size presents opportunities to control the peptide orientation on approach to a surface to achieve favourable presentation of bioactive motifs. Here we demonstrate control of the orientation of surface-bound peptides by tuning electric fields at the surface during immobilization. Guided by computational simulations, a peptide with a linear conformation in solution is designed. Electric fields are used to control the peptide approach towards a radical-functionalized surface. Spontaneous, irreversible immobilization is achieved when the peptide makes contact with the surface. Our findings show that control of both peptide orientation and surface concentration is achieved simply by varying the solution pH or by applying an electric field as delivered by a small battery.
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Affiliation(s)
- Lewis J Martin
- School of Physics, University of Sydney, Sydney, NSW, 2006, Australia
| | - Behnam Akhavan
- School of Physics, University of Sydney, Sydney, NSW, 2006, Australia.
- School of Aerospace, Mechanical and Mechatronic Engineering, University of Sydney, Sydney, NSW, 2006, Australia.
| | - Marcela M M Bilek
- School of Physics, University of Sydney, Sydney, NSW, 2006, Australia.
- School of Aerospace, Mechanical and Mechatronic Engineering, University of Sydney, Sydney, NSW, 2006, Australia.
- Charles Perkins Centre, University of Sydney, Sydney, NSW, 2006, Australia.
- University of Sydney Nano Institute, University of Sydney, Sydney, NSW, 2006, Australia.
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Holzer B, Manoli K, Ditaranto N, Macchia E, Tiwari A, Di Franco C, Scamarcio G, Palazzo G, Torsi L. Characterization of Covalently Bound Anti-Human Immunoglobulins on Self-Assembled Monolayer Modified Gold Electrodes. ACTA ACUST UNITED AC 2017; 1:e1700055. [DOI: 10.1002/adbi.201700055] [Citation(s) in RCA: 37] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2017] [Revised: 04/06/2017] [Indexed: 11/11/2022]
Affiliation(s)
- Brigitte Holzer
- Dipartimento di Chimica; Università degli Studi di Bari - “Aldo Moro”; Via Orabona 4 70126 Bari Italy
| | - Kyriaki Manoli
- Dipartimento di Chimica; Università degli Studi di Bari - “Aldo Moro”; Via Orabona 4 70126 Bari Italy
| | - Nicoletta Ditaranto
- Dipartimento di Chimica; Università degli Studi di Bari - “Aldo Moro”; Via Orabona 4 70126 Bari Italy
- CSGI (Center for Colloid and Surface Science) - Bari; Via Orabona 4 70126 Bari Italy
| | - Eleonora Macchia
- Dipartimento di Chimica; Università degli Studi di Bari - “Aldo Moro”; Via Orabona 4 70126 Bari Italy
| | - Amber Tiwari
- Dipartimento di Chimica; Università degli Studi di Bari - “Aldo Moro”; Via Orabona 4 70126 Bari Italy
| | - Cinzia Di Franco
- CNR - Istituto di Fotonica e Nanotecnologie; Sede di Bari; Via Orabona 4 70126 Bari Italy
| | - Gaetano Scamarcio
- CNR - Istituto di Fotonica e Nanotecnologie; Sede di Bari; Via Orabona 4 70126 Bari Italy
- Dipartimento di Fisica “M. Merlin” - Università degli Studi di Bari - “Aldo Moro”; Via Orabona 4 70126 Bari Italy
| | - Gerardo Palazzo
- Dipartimento di Chimica; Università degli Studi di Bari - “Aldo Moro”; Via Orabona 4 70126 Bari Italy
- CSGI (Center for Colloid and Surface Science) - Bari; Via Orabona 4 70126 Bari Italy
| | - Luisa Torsi
- Dipartimento di Chimica; Università degli Studi di Bari - “Aldo Moro”; Via Orabona 4 70126 Bari Italy
- CSGI (Center for Colloid and Surface Science) - Bari; Via Orabona 4 70126 Bari Italy
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Xie P, Cao X, Lin Z, Javanmard M. Top-down fabrication meets bottom-up synthesis for nanoelectronic barcoding of microparticles. LAB ON A CHIP 2017; 17:1939-1947. [PMID: 28470316 DOI: 10.1039/c7lc00035a] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
Traditional optical and plasmonic techniques for barcoding of micro-particles for multiplexed bioassays are generally high in throughput, however bulky instrumentation is often required for performing readout. Electrical impedance based detection allows for ultra-compact instrumentation footprint necessary for wearable devices, however to date, the lack of ability to electronically barcode micro-particles has been a long standing bottleneck towards enabling multiplexed electronic biomarker assays. Nanoelectronic barcoding, which to the best of our knowledge is the first impedance based solution for micro-particle barcoding, works by forming tunable nano-capacitors on the surface of micro-spheres, effectively modulating the frequency dependent dielectric properties of the spheres allowing one bead barcode to be distinguished from another. Nanoelectronic barcoding uses a well-known, but unexplored electromagnetic phenomenon of micro-particles: the Clausius-Mossotti (CM) factor spectrum of a Janus particle (JP) shifts depending on the zeta (wall) potential of the metallic half of the microsphere, and the fact that the complex impedance spectrum of a particle directly corresponds to the CM factor spectrum. A one-to-one correspondence will be established between each biomarker and the corresponding engineered microsphere. This transformative new method for barcoding will enable a new class of handheld and wearable biosensors capable of multiplexed continuous temporal bio-monitoring. The proposed nano-electronically barcoded particles utilize both bottom-up synthesis and top-down fabrication to enable precisely engineered frequency dependent dielectric signatures. Multi-frequency lock-in measurements of the complex impedance, in conjunction with multi-variate analysis of impedance data, allows for particle differentiation using a fully functional ultra-compact electronic detector.
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Affiliation(s)
- Pengfei Xie
- Department of Electrical and Computer Engineering, Rutgers University, USA.
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Shen M, Rusling J, Dixit CK. Site-selective orientated immobilization of antibodies and conjugates for immunodiagnostics development. Methods 2017; 116:95-111. [PMID: 27876681 PMCID: PMC5374010 DOI: 10.1016/j.ymeth.2016.11.010] [Citation(s) in RCA: 114] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2016] [Revised: 11/16/2016] [Accepted: 11/17/2016] [Indexed: 01/11/2023] Open
Abstract
Immobilized antibody systems are the key to develop efficient diagnostics and separations tools. In the last decade, developments in the field of biomolecular engineering and crosslinker chemistry have greatly influenced the development of this field. With all these new approaches at our disposal, several new immobilization methods have been created to address the main challenges associated with immobilized antibodies. Few of these challenges that we have discussed in this review are mainly associated to the site-specific immobilization, appropriate orientation, and activity retention. We have discussed the effect of antibody immobilization approaches on the parameters on the performance of an immunoassay.
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Affiliation(s)
- Min Shen
- Department of Chemistry, University of Connecticut, Storrs, Connecticut 06269-3060
| | - James Rusling
- Department of Chemistry, University of Connecticut, Storrs, Connecticut 06269-3060
- Institute of Materials Science, University of Connecticut, Storrs, Connecticut 06269-3136
- Department of Cell Biology, University of Connecticut Health Center, Farmington, Connecticut 060
- School of Chemistry, National University of Ireland at Galway, Galway, Ireland
| | - Chandra K Dixit
- Department of Chemistry, University of Connecticut, Storrs, Connecticut 06269-3060
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Wang Y, Vaidyanathan R, Shiddiky MJA, Trau M. Enabling Rapid and Specific Surface-Enhanced Raman Scattering Immunoassay Using Nanoscaled Surface Shear Forces. ACS NANO 2015; 9:6354-6362. [PMID: 25978642 DOI: 10.1021/acsnano.5b01929] [Citation(s) in RCA: 58] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
A rapid and simple approach is presented to address two critical issues of surface-enhanced Raman scattering (SERS)-based immunoassay such as removal/avoiding nonspecific adsorption and reducing assay time. The approach demonstrated involves rationally designed fluorophore-integrated gold/silver nanoshells as SERS nanotags and utilizes alternative current electrohydrodynamic (ac-EHD)-induced nanoscaled surface shear forces to enhance the capture kinetics. The assay performance was validated in comparison with hydrodynamic flow and conventional immunoassay-based devices. These nanoscaled physical forces acting within nanometer distances from the electrode surface enabled rapid (40 min), sensitive (10 fg/mL), and highly specific detection of human epidermal growth factor receptor 2 in breast cancer patient samples. We believe this approach presents potential for the development of rapid and sensitive SERS immunoassays for routine clinical diagnosis.
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Affiliation(s)
- Yuling Wang
- †Centre for Personalized Nanomedicine, Australian Institute for Bioengineering and Nanotechnology (AIBN), Corner College and Cooper Roads (Bldg 75), and ‡School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane QLD 4072, Australia
| | - Ramanathan Vaidyanathan
- †Centre for Personalized Nanomedicine, Australian Institute for Bioengineering and Nanotechnology (AIBN), Corner College and Cooper Roads (Bldg 75), and ‡School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane QLD 4072, Australia
| | - Muhammad J A Shiddiky
- †Centre for Personalized Nanomedicine, Australian Institute for Bioengineering and Nanotechnology (AIBN), Corner College and Cooper Roads (Bldg 75), and ‡School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane QLD 4072, Australia
| | - Matt Trau
- †Centre for Personalized Nanomedicine, Australian Institute for Bioengineering and Nanotechnology (AIBN), Corner College and Cooper Roads (Bldg 75), and ‡School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane QLD 4072, Australia
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