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For: Piccardi P, Vessman B, Mitri S. Toxicity drives facilitation between 4 bacterial species. Proc Natl Acad Sci U S A 2019;116:15979-15984. [PMID: 31270235 PMCID: PMC6690002 DOI: 10.1073/pnas.1906172116] [Citation(s) in RCA: 125] [Impact Index Per Article: 25.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]  Open
Number Cited by Other Article(s)
1
Yang L, Chen Q, Wei J, Fan T, Kong L, Long T, Zhang S, Deng S. Response of microbial communities in aquifers with multiple organic solvent contamination: Implications for MNA remedy. JOURNAL OF HAZARDOUS MATERIALS 2024;474:134798. [PMID: 38843633 DOI: 10.1016/j.jhazmat.2024.134798] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2024] [Revised: 05/07/2024] [Accepted: 06/01/2024] [Indexed: 06/26/2024]
2
Guo L, Xi B, Lu L. Strategies to enhance production of metabolites in microbial co-culture systems. BIORESOURCE TECHNOLOGY 2024;406:131049. [PMID: 38942211 DOI: 10.1016/j.biortech.2024.131049] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2024] [Revised: 06/06/2024] [Accepted: 06/25/2024] [Indexed: 06/30/2024]
3
Laurich JR, Lash E, O'Brien AM, Pogoutse O, Frederickson ME. Community interactions among microbes give rise to host-microbiome mutualisms in an aquatic plant. mBio 2024:e0097224. [PMID: 38904411 DOI: 10.1128/mbio.00972-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2024] [Accepted: 05/14/2024] [Indexed: 06/22/2024]  Open
4
Qiu J, Bai J, Wang Y, Zhai Y, Zhang X, Xu Y, Wang Y. Cadmium contamination decreased bacterial network complexity and stability in coastal reclamation areas. JOURNAL OF HAZARDOUS MATERIALS 2024;476:134896. [PMID: 38909464 DOI: 10.1016/j.jhazmat.2024.134896] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2024] [Revised: 06/02/2024] [Accepted: 06/11/2024] [Indexed: 06/25/2024]
5
Ni S, Teng Y, Zhang G, Xia W, Shu Y, Ren W. Exploring bacterial community assembly in vadose and saturated zone soil for tailored bioremediation of a long-term hydrocarbon-contaminated site. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024;360:121114. [PMID: 38754192 DOI: 10.1016/j.jenvman.2024.121114] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2024] [Revised: 05/06/2024] [Accepted: 05/06/2024] [Indexed: 05/18/2024]
6
Graça D, Arias-Real R, Fernandes I, Cássio F, Pascoal C. Fungal identity mediates the impacts of multiple stressors on freshwater ecosystems. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024;937:173466. [PMID: 38788941 DOI: 10.1016/j.scitotenv.2024.173466] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2024] [Revised: 05/16/2024] [Accepted: 05/21/2024] [Indexed: 05/26/2024]
7
Dekaj E, Gjini E. Pneumococcus and the stress-gradient hypothesis: A trade-off links R0 and susceptibility to co-colonization across countries. Theor Popul Biol 2024;156:77-92. [PMID: 38331222 DOI: 10.1016/j.tpb.2024.02.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2022] [Revised: 10/06/2023] [Accepted: 02/01/2024] [Indexed: 02/10/2024]
8
Alseth EO, Custodio R, Sundius SA, Kuske RA, Brown SP, Westra ER. The impact of phage and phage resistance on microbial community dynamics. PLoS Biol 2024;22:e3002346. [PMID: 38648198 PMCID: PMC11034675 DOI: 10.1371/journal.pbio.3002346] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2023] [Accepted: 03/19/2024] [Indexed: 04/25/2024]  Open
9
Yao J, Zhang Q, Gou M, Tang YQ. High synthetic cost-amino acids reduce member interactions of acetate-degrading methanogenic microbial community. Front Microbiol 2024;15:1368215. [PMID: 38605716 PMCID: PMC11007023 DOI: 10.3389/fmicb.2024.1368215] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2024] [Accepted: 03/20/2024] [Indexed: 04/13/2024]  Open
10
Čaušević S, Dubey M, Morales M, Salazar G, Sentchilo V, Carraro N, Ruscheweyh HJ, Sunagawa S, van der Meer JR. Niche availability and competitive loss by facilitation control proliferation of bacterial strains intended for soil microbiome interventions. Nat Commun 2024;15:2557. [PMID: 38519488 PMCID: PMC10959995 DOI: 10.1038/s41467-024-46933-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2023] [Accepted: 03/13/2024] [Indexed: 03/25/2024]  Open
11
Lories B, Belpaire TER, Smeets B, Steenackers HP. Competition quenching strategies reduce antibiotic tolerance in polymicrobial biofilms. NPJ Biofilms Microbiomes 2024;10:23. [PMID: 38503782 PMCID: PMC10951329 DOI: 10.1038/s41522-024-00489-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2022] [Accepted: 02/20/2024] [Indexed: 03/21/2024]  Open
12
Zhang J, Na M, Wang Y, Ge W, Zhou J, Zhou S. Cadmium levels and soil pH drive structure and function differentiation of endophytic bacterial communities in Sedum plumbizincicola: A field study. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024;912:168828. [PMID: 38029975 DOI: 10.1016/j.scitotenv.2023.168828] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2023] [Revised: 11/21/2023] [Accepted: 11/22/2023] [Indexed: 12/01/2023]
13
Di Martino R, Picot A, Mitri S. Oxidative stress changes interactions between 2 bacterial species from competitive to facilitative. PLoS Biol 2024;22:e3002482. [PMID: 38315734 PMCID: PMC10881020 DOI: 10.1371/journal.pbio.3002482] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2023] [Revised: 02/21/2024] [Accepted: 12/22/2023] [Indexed: 02/07/2024]  Open
14
Li J, Yu Z, Zheng Q, Chen W, Lin X. How antibiotic exposure affect predator-prey interactions by population dynamics in ciliates? AQUATIC TOXICOLOGY (AMSTERDAM, NETHERLANDS) 2024;267:106814. [PMID: 38160499 DOI: 10.1016/j.aquatox.2023.106814] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2023] [Revised: 11/19/2023] [Accepted: 12/20/2023] [Indexed: 01/03/2024]
15
Hesse E, O’Brien S. Ecological dependencies and the illusion of cooperation in microbial communities. MICROBIOLOGY (READING, ENGLAND) 2024;170:001442. [PMID: 38385784 PMCID: PMC10924460 DOI: 10.1099/mic.0.001442] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/24/2023] [Accepted: 02/09/2024] [Indexed: 02/23/2024]
16
Thomas JL, Rowland-Chandler J, Shou W. Artificial selection of microbial communities: what have we learnt and how can we improve? Curr Opin Microbiol 2024;77:102400. [PMID: 38091857 DOI: 10.1016/j.mib.2023.102400] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2023] [Revised: 10/06/2023] [Accepted: 10/19/2023] [Indexed: 02/12/2024]
17
Chen M, Zhou S, Xiang P, Wang Y, Luo X, Zhang X, Wen D. Elevated CO2 and nitrogen addition enhance the symbiosis and functions of rhizosphere microorganisms under cadmium exposure. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024;351:120012. [PMID: 38171127 DOI: 10.1016/j.jenvman.2023.120012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2023] [Revised: 12/30/2023] [Accepted: 12/30/2023] [Indexed: 01/05/2024]
18
Díaz-Sierra R, Rietkerk M, Verwijmeren M, Baudena M. Facilitation and competition deconstructed: a mechanistic modelling approach to the stress gradient hypothesis applied to drylands. Sci Rep 2024;14:2205. [PMID: 38272965 PMCID: PMC10810957 DOI: 10.1038/s41598-024-52447-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2023] [Accepted: 01/18/2024] [Indexed: 01/27/2024]  Open
19
Lin H, Wang D, Wang Q, Mao J, Bai Y, Qu J. Interspecific competition prevents the proliferation of social cheaters in an unstructured environment. THE ISME JOURNAL 2024;18:wrad038. [PMID: 38365247 PMCID: PMC10939377 DOI: 10.1093/ismejo/wrad038] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2023] [Revised: 12/22/2023] [Accepted: 12/22/2023] [Indexed: 02/18/2024]
20
Li Y, Chen Z, Wagg C, Castellano MJ, Zhang N, Ding W. Soil organic carbon loss decreases biodiversity but stimulates multitrophic interactions that promote belowground metabolism. GLOBAL CHANGE BIOLOGY 2024;30:e17101. [PMID: 38273560 DOI: 10.1111/gcb.17101] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2023] [Revised: 12/01/2023] [Accepted: 12/02/2023] [Indexed: 01/27/2024]
21
Zhang Y, Zhan J, Ma C, Liu W, Huang H, Yu H, Christie P, Li T, Wu L. Root-associated bacterial microbiome shaped by root selective effects benefits phytostabilization by Athyrium wardii (Hook.). ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2024;269:115739. [PMID: 38016191 DOI: 10.1016/j.ecoenv.2023.115739] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/20/2023] [Revised: 11/18/2023] [Accepted: 11/22/2023] [Indexed: 11/30/2023]
22
Sun X, Xie J, Zheng D, Xia R, Wang W, Xun W, Huang Q, Zhang R, Kovács ÁT, Xu Z, Shen Q. Metabolic interactions affect the biomass of synthetic bacterial biofilm communities. mSystems 2023;8:e0104523. [PMID: 37971263 PMCID: PMC10734490 DOI: 10.1128/msystems.01045-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2023] [Accepted: 10/05/2023] [Indexed: 11/19/2023]  Open
23
Burz SD, Causevic S, Dal Co A, Dmitrijeva M, Engel P, Garrido-Sanz D, Greub G, Hapfelmeier S, Hardt WD, Hatzimanikatis V, Heiman CM, Herzog MKM, Hockenberry A, Keel C, Keppler A, Lee SJ, Luneau J, Malfertheiner L, Mitri S, Ngyuen B, Oftadeh O, Pacheco AR, Peaudecerf F, Resch G, Ruscheweyh HJ, Sahin A, Sanders IR, Slack E, Sunagawa S, Tackmann J, Tecon R, Ugolini GS, Vacheron J, van der Meer JR, Vayena E, Vonaesch P, Vorholt JA. From microbiome composition to functional engineering, one step at a time. Microbiol Mol Biol Rev 2023;87:e0006323. [PMID: 37947420 PMCID: PMC10732080 DOI: 10.1128/mmbr.00063-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2023]  Open
24
Eble H, Joswig M, Lamberti L, Ludington WB. Master regulators of biological systems in higher dimensions. Proc Natl Acad Sci U S A 2023;120:e2300634120. [PMID: 38096409 PMCID: PMC10743376 DOI: 10.1073/pnas.2300634120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2023] [Accepted: 10/23/2023] [Indexed: 12/18/2023]  Open
25
Li Y, Su Z, Dai T, Zheng Y, Chen W, Zhao Y, Wen D. Moderate anthropogenic disturbance stimulates versatile microbial taxa contributing to denitrification and aromatic compound degradation. ENVIRONMENTAL RESEARCH 2023;238:117106. [PMID: 37699472 DOI: 10.1016/j.envres.2023.117106] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/03/2023] [Revised: 08/29/2023] [Accepted: 09/06/2023] [Indexed: 09/14/2023]
26
Kost C, Patil KR, Friedman J, Garcia SL, Ralser M. Metabolic exchanges are ubiquitous in natural microbial communities. Nat Microbiol 2023;8:2244-2252. [PMID: 37996708 DOI: 10.1038/s41564-023-01511-x] [Citation(s) in RCA: 12] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2022] [Accepted: 09/11/2023] [Indexed: 11/25/2023]
27
Houpt NSB, Kassen R. On the De Novo Emergence of Ecological Interactions during Evolutionary Diversification: A Conceptual Framework and Experimental Test. Am Nat 2023;202:800-817. [PMID: 38033179 DOI: 10.1086/726895] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2023]
28
Arya S, George AB, O’Dwyer JP. Sparsity of higher-order landscape interactions enables learning and prediction for microbiomes. Proc Natl Acad Sci U S A 2023;120:e2307313120. [PMID: 37991947 PMCID: PMC10691334 DOI: 10.1073/pnas.2307313120] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2023] [Accepted: 10/16/2023] [Indexed: 11/24/2023]  Open
29
Crocker K, Lee KK, Chakraverti-Wuerthwein M, Li Z, Tikhonov M, Mani M, Gowda K, Kuehn S. Global patterns in gene content of soil microbiomes emerge from microbial interactions. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.05.31.542950. [PMID: 38014336 PMCID: PMC10680560 DOI: 10.1101/2023.05.31.542950] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/29/2023]
30
Wang L, Lian C, Wan W, Qiu Z, Luo X, Huang Q, Deng Y, Zhang T, Yu K. Salinity-triggered homogeneous selection constrains the microbial function and stability in lakes. Appl Microbiol Biotechnol 2023;107:6591-6605. [PMID: 37688597 DOI: 10.1007/s00253-023-12696-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2023] [Revised: 05/24/2023] [Accepted: 07/18/2023] [Indexed: 09/11/2023]
31
D’Souza G, Schwartzman J, Keegstra J, Schreier JE, Daniels M, Cordero OX, Stocker R, Ackermann M. Interspecies interactions determine growth dynamics of biopolymer-degrading populations in microbial communities. Proc Natl Acad Sci U S A 2023;120:e2305198120. [PMID: 37878716 PMCID: PMC10622921 DOI: 10.1073/pnas.2305198120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2023] [Accepted: 09/12/2023] [Indexed: 10/27/2023]  Open
32
Vila JC, Goldford J, Estrela S, Bajic D, Sanchez-Gorostiaga A, Damian-Serrano A, Lu N, Marsland R, Rebolleda-Gomez M, Mehta P, Sanchez A. Metabolic similarity and the predictability of microbial community assembly. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.10.25.564019. [PMID: 37961608 PMCID: PMC10634833 DOI: 10.1101/2023.10.25.564019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/15/2023]
33
Chen Y, Zhang J, Zhu X, Wang Y, Chen J, Sui B, Teng HH. Unraveling the complexities of Cd-aniline composite pollution: Insights from standalone and joint toxicity assessments in a bacterial community. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2023;265:115509. [PMID: 37742573 DOI: 10.1016/j.ecoenv.2023.115509] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2023] [Revised: 09/05/2023] [Accepted: 09/20/2023] [Indexed: 09/26/2023]
34
Picot A, Shibasaki S, Meacock OJ, Mitri S. Microbial interactions in theory and practice: when are measurements compatible with models? Curr Opin Microbiol 2023;75:102354. [PMID: 37421708 DOI: 10.1016/j.mib.2023.102354] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2023] [Revised: 06/01/2023] [Accepted: 06/07/2023] [Indexed: 07/10/2023]
35
Alseth EO, Custodio R, Sundius SA, Kuske RA, Brown SP, Westra ER. The impact of phage and phage resistance on microbial community dynamics. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.09.26.559468. [PMID: 37808693 PMCID: PMC10557685 DOI: 10.1101/2023.09.26.559468] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/10/2023]
36
Shibasaki S, Mitri S. A spatially structured mathematical model of the gut microbiome reveals factors that increase community stability. iScience 2023;26:107499. [PMID: 37670791 PMCID: PMC10475486 DOI: 10.1016/j.isci.2023.107499] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2022] [Revised: 04/11/2023] [Accepted: 07/26/2023] [Indexed: 09/07/2023]  Open
37
Zhao Y, Liu Z, Zhang B, Cai J, Yao X, Zhang M, Deng Y, Hu B. Inter-bacterial mutualism promoted by public goods in a system characterized by deterministic temperature variation. Nat Commun 2023;14:5394. [PMID: 37669961 PMCID: PMC10480208 DOI: 10.1038/s41467-023-41224-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2023] [Accepted: 08/25/2023] [Indexed: 09/07/2023]  Open
38
Wang M, Wang X, Zhou S, Chen Z, Chen M, Feng S, Li J, Shu W, Cao B. Strong succession in prokaryotic association networks and community assembly mechanisms in an acid mine drainage-impacted riverine ecosystem. WATER RESEARCH 2023;243:120343. [PMID: 37482007 DOI: 10.1016/j.watres.2023.120343] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/02/2023] [Revised: 07/10/2023] [Accepted: 07/11/2023] [Indexed: 07/25/2023]
39
Lee H, Bloxham B, Gore J. Resource competition can explain simplicity in microbial community assembly. Proc Natl Acad Sci U S A 2023;120:e2212113120. [PMID: 37603734 PMCID: PMC10469513 DOI: 10.1073/pnas.2212113120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2022] [Accepted: 06/16/2023] [Indexed: 08/23/2023]  Open
40
Hanusch M, He X, Janssen S, Selke J, Trutschnig W, Junker RR. Exploring the Frequency and Distribution of Ecological Non-monotonicity in Associations among Ecosystem Constituents. Ecosystems 2023;26:1819-1840. [PMID: 38106357 PMCID: PMC10721710 DOI: 10.1007/s10021-023-00867-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2023] [Accepted: 07/06/2023] [Indexed: 12/19/2023]
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Scott WT, Benito-Vaquerizo S, Zimmermann J, Bajić D, Heinken A, Suarez-Diez M, Schaap PJ. A structured evaluation of genome-scale constraint-based modeling tools for microbial consortia. PLoS Comput Biol 2023;19:e1011363. [PMID: 37578975 PMCID: PMC10449394 DOI: 10.1371/journal.pcbi.1011363] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2023] [Revised: 08/24/2023] [Accepted: 07/17/2023] [Indexed: 08/16/2023]  Open
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Lu Y, Fu Y, Chen L, Cui J, Huang M, Fu Y, Liu H. Combined effect of simulated microgravity and low-dose ionizing radiation on structure and antibiotic resistance of a synthetic community model of bacteria isolated from spacecraft assembly room. LIFE SCIENCES IN SPACE RESEARCH 2023;38:29-38. [PMID: 37481305 DOI: 10.1016/j.lssr.2023.04.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/13/2023] [Revised: 04/05/2023] [Accepted: 04/25/2023] [Indexed: 07/24/2023]
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Zhao K, Yang Y, Hou J, Liu H, Zhang Y, Wang Q, Christie P, Qi P, Liu W. Depth and contaminant-shaped bacterial community structure and assembly at an aged chlorinated aliphatic hydrocarbon-contaminated site. JOURNAL OF HAZARDOUS MATERIALS 2023;452:131220. [PMID: 37003001 DOI: 10.1016/j.jhazmat.2023.131220] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/18/2023] [Revised: 03/04/2023] [Accepted: 03/14/2023] [Indexed: 05/03/2023]
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Bonal M, Goetghebuer L, Joseph C, Gonze D, Faust K, George IF. Deciphering Interactions Within a 4-Strain Riverine Bacterial Community. Curr Microbiol 2023;80:238. [PMID: 37294449 DOI: 10.1007/s00284-023-03342-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2022] [Accepted: 05/23/2023] [Indexed: 06/10/2023]
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Aguilar-Salinas B, Olmedo-Álvarez G. A three-species synthetic community model whose rapid response to antagonism allows the study of higher-order dynamics and emergent properties in minutes. Front Microbiol 2023;14:1057883. [PMID: 37333661 PMCID: PMC10272403 DOI: 10.3389/fmicb.2023.1057883] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2022] [Accepted: 05/02/2023] [Indexed: 06/20/2023]  Open
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Amarnath K, Narla AV, Pontrelli S, Dong J, Reddan J, Taylor BR, Caglar T, Schwartzman J, Sauer U, Cordero OX, Hwa T. Stress-induced metabolic exchanges between complementary bacterial types underly a dynamic mechanism of inter-species stress resistance. Nat Commun 2023;14:3165. [PMID: 37258505 DOI: 10.1038/s41467-023-38913-8] [Citation(s) in RCA: 11] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2022] [Accepted: 05/19/2023] [Indexed: 06/02/2023]  Open
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Yao K, Cai A, Han J, Che R, Hao J, Wang F, Ye M, Jiang X. The characteristics and metabolic potentials of the soil bacterial community of two typical military demolition ranges in China. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023;874:162562. [PMID: 36871728 DOI: 10.1016/j.scitotenv.2023.162562] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2023] [Revised: 02/25/2023] [Accepted: 02/26/2023] [Indexed: 06/18/2023]
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Li X, Wu S, Fan H, Dong Y, Wang Y, Bai Z, Jing C, Zhuang X. Phylogenetic distance affects the artificial microbial consortia's effectiveness and colonization during the bioremediation of polluted soil with Cr(VI) and atrazine. JOURNAL OF HAZARDOUS MATERIALS 2023;454:131460. [PMID: 37141777 DOI: 10.1016/j.jhazmat.2023.131460] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/03/2023] [Revised: 04/10/2023] [Accepted: 04/19/2023] [Indexed: 05/06/2023]
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Vogel AL, Thompson KJ, Kleindienst S, Zarfl C. Dosage concentration and pulsing frequency affect the degradation efficiency in simulated bacterial polycyclic aromatic hydrocarbon-degrading cultures. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023;30:59813-59825. [PMID: 37016250 PMCID: PMC10163121 DOI: 10.1007/s11356-023-26546-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2022] [Accepted: 03/15/2023] [Indexed: 05/08/2023]
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Gao Z, Ghosh D, Harrington HA, Restrepo JG, Taylor D. Dynamics on networks with higher-order interactions. CHAOS (WOODBURY, N.Y.) 2023;33:040401. [PMID: 37097941 DOI: 10.1063/5.0151265] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2023] [Accepted: 03/22/2023] [Indexed: 06/19/2023]
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