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Duborská E, Balíková K, Matulová M, Zvěřina O, Farkas B, Littera P, Urík M. Production of Methyl-Iodide in the Environment. Front Microbiol 2021; 12:804081. [PMID: 35003036 PMCID: PMC8733467 DOI: 10.3389/fmicb.2021.804081] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2021] [Accepted: 12/06/2021] [Indexed: 11/13/2022] Open
Abstract
Iodine is an essential micronutrient for most of the living beings, including humans. Besides its indispensable role in animals, it also plays an important role in the environment. It undergoes several chemical and biological transformations resulting in the production of volatile methylated iodides, which play a key role in the iodine's global geochemical cycle. Since it can also mitigate the process of climate change, it is reasonable to study its biogeochemistry. Therefore, the aim of this review is to provide information on its origin, global fluxes and mechanisms of production in the environment.
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Affiliation(s)
- Eva Duborská
- Faculty of Natural Sciences, Institute of Laboratory Research on Geomaterials, Comenius University in Bratislava, Bratislava, Slovakia
| | - Katarína Balíková
- Faculty of Natural Sciences, Institute of Laboratory Research on Geomaterials, Comenius University in Bratislava, Bratislava, Slovakia
| | - Michaela Matulová
- Faculty of Natural Sciences, Institute of Laboratory Research on Geomaterials, Comenius University in Bratislava, Bratislava, Slovakia
| | - Ondřej Zvěřina
- Department of Public Health, Faculty of Medicine, Masaryk University, Brno, Czechia
| | - Bence Farkas
- Faculty of Natural Sciences, Institute of Laboratory Research on Geomaterials, Comenius University in Bratislava, Bratislava, Slovakia
| | - Pavol Littera
- Faculty of Natural Sciences, Institute of Laboratory Research on Geomaterials, Comenius University in Bratislava, Bratislava, Slovakia
| | - Martin Urík
- Faculty of Natural Sciences, Institute of Laboratory Research on Geomaterials, Comenius University in Bratislava, Bratislava, Slovakia
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Mizuta H, Uji T, Yasui H. Extracellular silicate uptake and deposition induced by oxidative burst in Saccharina japonica sporophytes (Phaeophyceae). ALGAL RES 2021. [DOI: 10.1016/j.algal.2021.102369] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Thapa HR, Agarwal V. Obligate Brominating Enzymes Underlie Bromoform Production by Marine Cyanobacteria. JOURNAL OF PHYCOLOGY 2021; 57:1131-1139. [PMID: 33556207 DOI: 10.1111/jpy.13142] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2020] [Revised: 01/02/2021] [Accepted: 01/14/2021] [Indexed: 06/12/2023]
Abstract
Marine algae are prolific producers of bromoform (CHBr3 ). This naturally produced molecule is a potent environmental pollutant as it volatilizes into the atmosphere and contributes to depletion of the ozone layer in a manner akin to, and in magnitude similar to, man-made chlorofluorocarbons. While phototrophs such as seaweeds, diatoms, and dinoflagellates are known sources of bromoform, additional as yet unknown biogenetic sources of bromoform exist in the oceans. Here, using halogenating enzymes as diagnostic genetic elements, we demonstrate that marine cyanobacteria also possess the enzymological potential for bromoform production. Using recombinantly purified vanadium-dependent bromoperoxidases from planktonic and bloom-forming marine cyanobacteria in in vitro biochemical assays, we reconstitute the enzymatic production of bromoform. We find cyanobacterial bromoform synthesizing enzymes to be obligate brominases possessing no chlorinating activities. These results expand the repertoire of marine biotic sources that introduce this pollutant in the atmosphere.
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Affiliation(s)
- Hem R Thapa
- School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, GA, USA
| | - Vinayak Agarwal
- School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, GA, USA
- School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, USA
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Role and Evolution of the Extracellular Matrix in the Acquisition of Complex Multicellularity in Eukaryotes: A Macroalgal Perspective. Genes (Basel) 2021; 12:genes12071059. [PMID: 34356075 PMCID: PMC8307928 DOI: 10.3390/genes12071059] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2021] [Revised: 07/05/2021] [Accepted: 07/08/2021] [Indexed: 12/12/2022] Open
Abstract
Multicellular eukaryotes are characterized by an expanded extracellular matrix (ECM) with a diversified composition. The ECM is involved in determining tissue texture, screening cells from the outside medium, development, and innate immunity, all of which are essential features in the biology of multicellular eukaryotes. This review addresses the origin and evolution of the ECM, with a focus on multicellular marine algae. We show that in these lineages the expansion of extracellular matrix played a major role in the acquisition of complex multicellularity through its capacity to connect, position, shield, and defend the cells. Multiple innovations were necessary during these evolutionary processes, leading to striking convergences in the structures and functions of the ECMs of algae, animals, and plants.
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Smoleń S, Czernicka M, Kowalska I, Kȩska K, Halka M, Grzebelus D, Grzanka M, Skoczylas Ł, Pitala J, Koronowicz A, Kováčik P. New Aspects of Uptake and Metabolism of Non-organic and Organic Iodine Compounds-The Role of Vanadium and Plant-Derived Thyroid Hormone Analogs in Lettuce. FRONTIERS IN PLANT SCIENCE 2021; 12:653168. [PMID: 33936138 PMCID: PMC8086602 DOI: 10.3389/fpls.2021.653168] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2021] [Accepted: 03/19/2021] [Indexed: 05/26/2023]
Abstract
The process of uptake and translocation of non-organic iodine (I) ions, I- and IO3 -, has been relatively well-described in literature. The situation is different for low-molecular-weight organic aromatic I compounds, as data on their uptake or metabolic pathway is only fragmentary. The aim of this study was to determine the process of uptake, transport, and metabolism of I applied to lettuce plants by fertigation as KIO3, KIO3 + salicylic acid (KIO3+SA), and iodosalicylates, 5-iodosalicylic acid (5-ISA) and 3,5-diiodosalicylic acid (3,5-diISA), depending on whether additional fertilization with vanadium (V) was used. Each I compound was applied at a dose of 10 μM, SA at a dose of 10 μM, and V at a dose of 0.1 μM. Three independent 2-year-long experiments were carried out with lettuce; two with pot systems using a peat substrate and mineral soil and one with hydroponic lettuce. The effectiveness of I uptake and translocation from the roots to leaves was as follows: 5-ISA > 3,5-diISA > KIO3. Iodosalicylates, 5-ISA and 3,5-diISA, were naturally synthesized in plants, similarly to other organic iodine metabolites, i.e., iodotyrosine, as well as plant-derived thyroid hormone analogs (PDTHA), triiodothyronine (T3) and thyroxine (T4). T3 and T4 were synthesized in roots with the participation of endogenous and exogenous 5-ISA and 3,5-diISA and then transported to leaves. The level of plant enrichment in I was safe for consumers. Several genes were shown to perform physiological functions, i.e., per64-like, samdmt, msams5, and cipk6.
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Affiliation(s)
- Sylwester Smoleń
- Department of Plant Biology and Biotechnology, Faculty of Biotechnology and Horticulture, University of Agriculture in Krakow, Kraków, Poland
| | - Małgorzata Czernicka
- Department of Plant Biology and Biotechnology, Faculty of Biotechnology and Horticulture, University of Agriculture in Krakow, Kraków, Poland
| | - Iwona Kowalska
- Department of Plant Biology and Biotechnology, Faculty of Biotechnology and Horticulture, University of Agriculture in Krakow, Kraków, Poland
| | - Kinga Kȩska
- Department of Plant Biology and Biotechnology, Faculty of Biotechnology and Horticulture, University of Agriculture in Krakow, Kraków, Poland
| | - Maria Halka
- Department of Plant Biology and Biotechnology, Faculty of Biotechnology and Horticulture, University of Agriculture in Krakow, Kraków, Poland
| | - Dariusz Grzebelus
- Department of Plant Biology and Biotechnology, Faculty of Biotechnology and Horticulture, University of Agriculture in Krakow, Kraków, Poland
| | - Marlena Grzanka
- Department of Plant Biology and Biotechnology, Faculty of Biotechnology and Horticulture, University of Agriculture in Krakow, Kraków, Poland
| | - Łukasz Skoczylas
- Department of Plant Product Technology and Nutrition Hygiene, Faculty of Food Technology, University of Agriculture in Krakow, Kraków, Poland
| | - Joanna Pitala
- Laboratory of Mass Spectrometry, Faculty of Biotechnology and Horticulture, University of Agriculture in Krakow, Kraków, Poland
| | - Aneta Koronowicz
- Department of Human Nutrition and Dietetics, Faculty of Food Technology, University of Agriculture in Krakow, Kraków, Poland
| | - Peter Kováčik
- Department of Agrochemistry and Plant Nutrition, Slovak University of Agriculture in Nitra, Nitra, Slovakia
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Küpper FC, Carrano CJ. Key aspects of the iodine metabolism in brown algae: a brief critical review. Metallomics 2019; 11:756-764. [PMID: 30834917 DOI: 10.1039/c8mt00327k] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Brown algae include the strongest accumulators of iodine known among living systems. This paper reviews the current state of bioinorganic research in the field, focusing on the models Laminaria digitata, Macrocystis pyrifera and Ectocarpus siliculosus, and covering uptake and efflux, localization and biological significance of storage, as well as marine and atmospheric chemistry of iodine.
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Affiliation(s)
- Frithjof C Küpper
- School of Biological Sciences, University of Aberdeen, Cruickshank Building, St. Machar Drive, Aberdeen AB24 3UU, Scotland, UK
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Abstract
This review is intended as a comprehensive survey of iodinated metabolites possessing carbon–iodine covalent bond, which have been obtained from living organisms. Generally thought to be minor components produced by many different organisms these interesting compounds now number more than 110. Many from isolated and identified iodine-containing metabolites showed high biological activities. Recent research, especially in the marine area, indicates this number will increase in the future. Sources of iodinated metabolites include microorganisms, algae, marine invertebrates, and some animals. Their origin and possible biological significance have also been discussed.
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Affiliation(s)
- Valery M Dembitsky
- Department of Medicinal Chemistry and Natural Products, School of Pharmacy, P.O. Box 12065, The Hebrew University of Jerusalem, Jerusalem 91120, Israel
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8
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Xu D, Brennan G, Xu L, Zhang XW, Fan X, Han WT, Mock T, McMinn A, Hutchins DA, Ye N. Ocean acidification increases iodine accumulation in kelp-based coastal food webs. GLOBAL CHANGE BIOLOGY 2019; 25:629-639. [PMID: 30295390 DOI: 10.1111/gcb.14467] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/04/2018] [Accepted: 09/19/2018] [Indexed: 06/08/2023]
Abstract
Kelp are main iodine accumulators in the ocean, and their growth and photosynthesis are likely to benefit from elevated seawater CO2 levels due to ocean acidification. However, there are currently no data on the effects of ocean acidification on iodine metabolism in kelp. As key primary producers in coastal ecosystems worldwide, any change in their iodine metabolism caused by climate change will potentially have important consequences for global geochemical cycles of iodine, including iodine levels of coastal food webs that underpin the nutrition of billions of humans around the world. Here, we found that elevated pCO2 enhanced growth and increased iodine accumulation not only in the model kelp Saccharina japonica using both short-term laboratory experiment and long-term in situ mesocosms, but also in several other edible and ecologically significant seaweeds using long-term in situ mesocosms. Transcriptomic and proteomic analysis of S. japonica revealed that most vanadium-dependent haloperoxidase genes involved in iodine efflux during oxidative stress are down-regulated under increasing pCO2 , suggesting that ocean acidification alleviates oxidative stress in kelp, which might contribute to their enhanced growth. When consumed by abalone (Haliotis discus), elevated iodine concentrations in S. japonica caused increased iodine accumulation in abalone, accompanied by reduced synthesis of thyroid hormones. Thus, our results suggest that kelp will benefit from ocean acidification by a reduction in environmental stress however; iodine levels, in kelp-based coastal food webs will increase, with potential impacts on biogeochemical cycles of iodine in coastal ecosystems.
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Affiliation(s)
- Dong Xu
- Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, China
- Function Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China
| | - Georgina Brennan
- Molecular Ecology and Fisheries Genetics Laboratory, School of Biological Sciences, Bangor University, Bangor, UK
| | - Le Xu
- Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, China
| | - Xiao W Zhang
- Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, China
| | - Xiao Fan
- Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, China
| | - Wen T Han
- Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, China
| | - Thomas Mock
- School of Environmental Sciences, University of East Anglia, Norwich, UK
| | - Andrew McMinn
- Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, Tasmania, Australia
- Fisheries College, Ocean University of China, Qingdao, China
| | - David A Hutchins
- Department of Biological Sciences, University of Southern California, Los Angeles, California
| | - Naihao Ye
- Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, China
- Function Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China
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Küpper FC, Miller EP, Andrews SJ, Hughes C, Carpenter LJ, Meyer-Klaucke W, Toyama C, Muramatsu Y, Feiters MC, Carrano CJ. Emission of volatile halogenated compounds, speciation and localization of bromine and iodine in the brown algal genome model Ectocarpus siliculosus. J Biol Inorg Chem 2018; 23:1119-1128. [PMID: 29523971 DOI: 10.1007/s00775-018-1539-7] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2017] [Accepted: 01/28/2018] [Indexed: 11/25/2022]
Abstract
This study explores key features of bromine and iodine metabolism in the filamentous brown alga and genomics model Ectocarpus siliculosus. Both elements are accumulated in Ectocarpus, albeit at much lower concentration factors (2-3 orders of magnitude for iodine, and < 1 order of magnitude for bromine) than e.g. in the kelp Laminaria digitata. Iodide competitively reduces the accumulation of bromide. Both iodide and bromide are accumulated in the cell wall (apoplast) of Ectocarpus, with minor amounts of bromine also detectable in the cytosol. Ectocarpus emits a range of volatile halogenated compounds, the most prominent of which by far is methyl iodide. Interestingly, biosynthesis of this compound cannot be accounted for by vanadium haloperoxidase since the latter have not been found to catalyze direct halogenation of an unactivated methyl group or hydrocarbon so a methyl halide transferase-type production mechanism is proposed.
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Affiliation(s)
- Frithjof C Küpper
- Oceanlab, University of Aberdeen, Main Street, Newburgh, AB41 6AA, Scotland, UK.
- Dunstaffnage Marine Laboratory, Scottish Association for Marine Science, Oban, Argyll, PA37 1QA, Scotland, UK.
| | - Eric P Miller
- Department of Chemistry and Biochemistry, San Diego State University, San Diego, CA, 92182-1030, USA
| | - Stephen J Andrews
- Wolfson Atmospheric Chemistry Laboratories, Department of Chemistry, University of York, York, YO10 5DD, UK
| | - Claire Hughes
- Environment Department, University of York, York, YO10 5NG, UK
| | - Lucy J Carpenter
- Wolfson Atmospheric Chemistry Laboratories, Department of Chemistry, University of York, York, YO10 5DD, UK
| | - Wolfram Meyer-Klaucke
- Department of Chemistry - Inorganic Chemistry, Faculty of Science, University of Paderborn, Warburger Strasse 100, 33098, Paderborn, Germany
| | - Chiaki Toyama
- Geological Survey of Japan, The National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Ibaraki, 305-8567, Japan
| | - Yasuyuki Muramatsu
- Department of Chemistry, Faculty of Science, Gakushuin University, Toshima-Ku, Tokyo, 171-8588, Japan
| | - Martin C Feiters
- Department of Organic Chemistry, Institute for Molecules and Materials, Radboud University Nijmegen, Heyendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands
| | - Carl J Carrano
- Department of Chemistry and Biochemistry, San Diego State University, San Diego, CA, 92182-1030, USA
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Punitha T, Phang SM, Juan JC, Beardall J. Environmental Control of Vanadium Haloperoxidases and Halocarbon Emissions in Macroalgae. MARINE BIOTECHNOLOGY (NEW YORK, N.Y.) 2018; 20:282-303. [PMID: 29691674 DOI: 10.1007/s10126-018-9820-x] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2016] [Accepted: 12/04/2017] [Indexed: 06/08/2023]
Abstract
Vanadium-dependent haloperoxidases (V-HPO), able to catalyze the reaction of halide ions (Cl-, Br-, I-) with hydrogen peroxide, have a great influence on the production of halocarbons, which in turn are involved in atmospheric ozone destruction and global warming. The production of these haloperoxidases in macroalgae is influenced by changes in the surrounding environment. The first reported vanadium bromoperoxidase was discovered 40 years ago in the brown alga Ascophyllum nodosum. Since that discovery, more studies have been conducted on the structure and mechanism of the enzyme, mainly focused on three types of V-HPO, the chloro- and bromoperoxidases and, more recently, the iodoperoxidase. Since aspects of environmental regulation of haloperoxidases are less well known, the present paper will focus on reviewing the factors which influence the production of these enzymes in macroalgae, particularly their interactions with reactive oxygen species (ROS).
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Affiliation(s)
- Thillai Punitha
- Institute of Ocean and Earth Sciences, University of Malaya, 50603, Kuala Lumpur, Malaysia
- Institute of Graduate Studies, University of Malaya, 50603, Kuala Lumpur, Malaysia
| | - Siew-Moi Phang
- Institute of Ocean and Earth Sciences, University of Malaya, 50603, Kuala Lumpur, Malaysia.
- Institute of Biological Sciences, University of Malaya, 50603, Kuala Lumpur, Malaysia.
| | - Joon Ching Juan
- Nanotechnology and Catalysis Research Centre (NANOCAT), University of Malaya, Level 3, IPS Building, Kuala Lumpur, Malaysia.
- School of Science, Monash University Malaysia Campus, Bandar Sunway, 46150, Subang Jaya, Malaysia.
| | - John Beardall
- School of Biological Sciences, Monash University, Clayton, VIC, 3800, Australia
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Wever R, Krenn BE, Renirie R. Marine Vanadium-Dependent Haloperoxidases, Their Isolation, Characterization, and Application. Methods Enzymol 2018; 605:141-201. [PMID: 29909824 DOI: 10.1016/bs.mie.2018.02.026] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Vanadium-dependent haloperoxidases in seaweeds, cyanobacteria, fungi, and possibly phytoplankton play an important role in the release of halogenated volatile compounds in the environment. These halocarbons have effects on atmospheric chemistry since they cause ozone depletion. In this chapter, a survey is given of the different sources of these enzymes, some of their properties, the various methods to isolate them, and the bottlenecks in purification. The assays to detect and quantify haloperoxidase activity are described as well as their kinetic properties. Several practical tips and pitfalls are given which have not yet been published explicitly. Recent developments in research on structure and function of these enzymes are reviewed. Finally, the application of vanadium-dependent haloperoxidases in the biosynthesis of brominated and other compounds is discussed.
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Affiliation(s)
- Ron Wever
- University of Amsterdam, Van't Hoff Institute for Molecular Sciences, Amsterdam, The Netherlands.
| | - Bea E Krenn
- University of Amsterdam, Innovation Exchange Amsterdam, Amsterdam, The Netherlands
| | - Rokus Renirie
- University of Amsterdam, Van't Hoff Institute for Molecular Sciences, Amsterdam, The Netherlands
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Tymon TM, Miller EP, Gonzales JL, Raab A, Küpper FC, Carrano CJ. Some aspects of the iodine metabolism of the giant kelp Macrocystis pyrifera (phaeophyceae). J Inorg Biochem 2017; 177:82-88. [PMID: 28926758 DOI: 10.1016/j.jinorgbio.2017.09.003] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2017] [Revised: 09/04/2017] [Accepted: 09/06/2017] [Indexed: 11/16/2022]
Abstract
Despite its paramount role in the functioning of coastal ecosystems, relatively little is known about halogen metabolism in giant kelp (Macrocystis pyrifera). This is an important shortcoming given the potential implications for marine and atmospheric chemical processes in the wide distribution range of Macrocystis. The work presented here constitutes the first in depth investigation of the uptake, efflux, and of the physiological function of iodide in this important kelp species. Iodide uptake and efflux rates were measured in adult sporophytes of Macrocystis under normal and stressed (exogenous hydrogen peroxide and an elicitor-triggered oxidative burst) conditions. Kelp tissue took up iodide according to Michaelis-Menten type kinetics when incubated in seawater enriched with various concentrations of iodide. Upon the addition of exogenous hydrogen peroxide, simulating oxidative stress, a marked efflux of iodide occurred. In situ generation of hydrogen peroxide was elicited in Macrocystis upon the addition of oligomeric degradation products of alginate as well as arachidonic acid and methyl jasmonate constituting a defensive oxidative burst that could be linked to iodine accumulation. H2O2 was detected at the single cell level using dichlorohydrofluorescein diacetate, a fluorogenic probe capable of detecting intracellular H2O2. When assayed for vanadium haloperoxidase activity, several bromoperoxidase isoforms were detected as well as a single iodoperoxidase. Altogether, the results of this study show that Macrocystis has an elaborate iodine metabolism, which is likely significant for impacting iodine speciation in seawater around kelp beds and for volatile halogen emissions into the coastal atmosphere.
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Affiliation(s)
- Teresa M Tymon
- Department of Chemistry and Biochemistry, San Diego State University, San Diego, CA 92182-1030, USA
| | - Eric P Miller
- Department of Chemistry and Biochemistry, San Diego State University, San Diego, CA 92182-1030, USA
| | - Jennifer L Gonzales
- Department of Chemistry and Biochemistry, San Diego State University, San Diego, CA 92182-1030, USA
| | - Andrea Raab
- Department of Chemistry, University of Aberdeen, Aberdeen AB24 3FX, UK
| | | | - Carl J Carrano
- Department of Chemistry and Biochemistry, San Diego State University, San Diego, CA 92182-1030, USA.
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Mithoo-Singh PK, Keng FSL, Phang SM, Leedham Elvidge EC, Sturges WT, Malin G, Abd Rahman N. Halocarbon emissions by selected tropical seaweeds: species-specific and compound-specific responses under changing pH. PeerJ 2017; 5:e2918. [PMID: 28149690 PMCID: PMC5270595 DOI: 10.7717/peerj.2918] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2016] [Accepted: 12/17/2016] [Indexed: 11/21/2022] Open
Abstract
Five tropical seaweeds, Kappaphycus alvarezii (Doty) Doty ex P.C. Silva, Padina australis Hauck, Sargassum binderi Sonder ex J. Agardh (syn. S. aquifolium (Turner) C. Agardh), Sargassum siliquosum J. Agardh and Turbinaria conoides (J. Agardh) Kützing, were incubated in seawater of pH 8.0, 7.8 (ambient), 7.6, 7.4 and 7.2, to study the effects of changing seawater pH on halocarbon emissions. Eight halocarbon species known to be emitted by seaweeds were investigated: bromoform (CHBr3), dibro-momethane (CH2Br2), iodomethane (CH3I), diiodomethane (CH2I2), bromoiodomethane (CH2BrI), bromochlorometh-ane (CH2BrCl), bromodichloromethane (CHBrCl2), and dibro-mochloromethane (CHBr2Cl). These very short-lived halocarbon gases are believed to contribute to stratospheric halogen concentrations if released in the tropics. It was observed that the seaweeds emit all eight halocarbons assayed, with the exception of K. alvarezii and S. binderi for CH2I2 and CH3I respectively, which were not measurable at the achievable limit of detection. The effect of pH on halocarbon emission by the seaweeds was shown to be species-specific and compound specific. The highest percentage changes in emissions for the halocarbons of interest were observed at the lower pH levels of 7.2 and 7.4 especially in Padina australis and Sargassum spp., showing that lower seawater pH causes elevated emissions of some halocarbon compounds. In general the seaweed least affected by pH change in terms of types of halocarbon emission, was P. australis. The commercially farmed seaweed K. alvarezii was very sensitive to pH change as shown by the high increases in most of the compounds in all pH levels relative to ambient. In terms of percentage decrease in maximum quantum yield of photosynthesis (Fv∕Fm) prior to and after incubation, there were no significant correlations with the various pH levels tested for all seaweeds. The correlation between percentage decrease in the maximum quantum yield of photosynthesis (Fv∕Fm) and halocarbon emission rates, was significant only for CH2BrCl emission by P. australis (r = 0.47; p ≤ 0.04), implying that photosynthesis may not be closely linked to halocarbon emissions by the seaweeds studied. Bromine was the largest contributor to the total mass of halogen emitted for all the seaweeds at all pH. The highest total amount of bromine emitted by K. alvarezii (an average of 98% of total mass of halogens) and the increase in the total amount of chlorine with decreasing seawater pH fuels concern for the expanding seaweed farming activities in the ASEAN region.
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Affiliation(s)
- Paramjeet Kaur Mithoo-Singh
- Institute of Ocean and Earth Sciences (IOES), University of Malaya, Kuala Lumpur, Malaysia
- Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur, Malaysia
| | - Fiona S.-L. Keng
- Institute of Ocean and Earth Sciences (IOES), University of Malaya, Kuala Lumpur, Malaysia
- Institute of Graduate Studies (IGS), University of Malaya, Kuala Lumpur, Malaysia
| | - Siew-Moi Phang
- Institute of Ocean and Earth Sciences (IOES), University of Malaya, Kuala Lumpur, Malaysia
- Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur, Malaysia
| | - Emma C. Leedham Elvidge
- Centre for Ocean and Atmospheric Sciences, School of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich, United Kingdom
| | - William T. Sturges
- Centre for Ocean and Atmospheric Sciences, School of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich, United Kingdom
| | - Gill Malin
- Centre for Ocean and Atmospheric Sciences, School of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich, United Kingdom
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Leblanc C, Vilter H, Fournier JB, Delage L, Potin P, Rebuffet E, Michel G, Solari P, Feiters M, Czjzek M. Vanadium haloperoxidases: From the discovery 30 years ago to X-ray crystallographic and V K-edge absorption spectroscopic studies. Coord Chem Rev 2015. [DOI: 10.1016/j.ccr.2015.02.013] [Citation(s) in RCA: 64] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
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Matsuda R, Ozgur R, Higashi Y, Takechi K, Takano H, Takio S. Preferential expression of a bromoperoxidase in sporophytes of a red alga, Pyropia yezoensis. MARINE BIOTECHNOLOGY (NEW YORK, N.Y.) 2015; 17:199-210. [PMID: 25407492 DOI: 10.1007/s10126-014-9608-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2014] [Accepted: 10/21/2014] [Indexed: 06/04/2023]
Abstract
A 2,158 bp cDNA (PyBPO1) encoding a bromoperoxidase (BPO) of 625 amino acids was isolated from Pyropia yezoensis. Phylogenetic analysis using amino acid sequences of BPOs suggested that P. yezoensis and cyanobacteria were grouped in the same clade and separated from brown algae. Genomic Southern blot analysis suggested that PyBPO1 existed as a single copy per haploid genome. RT-PCR revealed that PyBPO1 was actively expressed in filamentous sporophytes but repressed in leafy gametophytes under normal growth conditions. High expression levels of PyBPO1 in sporophytes were observed when sporophytes were grown under gametophyte conditions, suggesting that preferential expression of PyBPO1 occurs during the sporophyte phase. BPO activity of cell-free extracts from sporophytes and gametophytes was examined by activity staining on native PAGE gel using o-dianisidine. One activity band was detected in sporophyte sample, but not in gametophyte sample. In addition, we found that bromide and iodide were effective substrate, but chloride was not. BPO activity was observed-likely in chloroplasts-when sporophyte cells were incubated with o-dianisidine and hydrogen peroxide. Cellular BPO staining showed the same halogen preference identified by in-gel BPO staining. Based on GS-MS analysis, bromoform was detected in medium containing sporophytes. Bromoform was not detected under dark culture conditions but was detected in the culture exposed to low light intensity (5 μmol m(-2) s(-1)) and increased under a moderate light intensity (30 μmol m(-2) s(-1)).
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Affiliation(s)
- Ryuya Matsuda
- Graduate School of Science and Technology, Kumamoto University, Kurokami, Kumamoto, 860-8555, Japan
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16
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The Vanadium Iodoperoxidase from the marine flavobacteriaceae species Zobellia galactanivorans reveals novel molecular and evolutionary features of halide specificity in the vanadium haloperoxidase enzyme family. Appl Environ Microbiol 2014; 80:7561-73. [PMID: 25261522 DOI: 10.1128/aem.02430-14] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023] Open
Abstract
Vanadium haloperoxidases (VHPO) are key enzymes that oxidize halides and are involved in the biosynthesis of organo-halogens. Until now, only chloroperoxidases (VCPO) and bromoperoxidases (VBPO) have been characterized structurally, mainly from eukaryotic species. Three putative VHPO genes were predicted in the genome of the flavobacterium Zobellia galactanivorans, a marine bacterium associated with macroalgae. In a phylogenetic analysis, these putative bacterial VHPO were closely related to other VHPO from diverse bacterial phyla but clustered independently from eukaryotic algal VBPO and fungal VCPO. Two of these bacterial VHPO, heterogeneously produced in Escherichia coli, were found to be strictly specific for iodide oxidation. The crystal structure of one of these vanadium-dependent iodoperoxidases, Zg-VIPO1, was solved by multiwavelength anomalous diffraction at 1.8 Å, revealing a monomeric structure mainly folded into α-helices. This three-dimensional structure is relatively similar to those of VCPO of the fungus Curvularia inaequalis and of Streptomyces sp. and is superimposable onto the dimeric structure of algal VBPO. Surprisingly, the vanadate binding site of Zg-VIPO1 is strictly conserved with the fungal VCPO active site. Using site-directed mutagenesis, we showed that specific amino acids and the associated hydrogen bonding network around the vanadate center are essential for the catalytic properties and also the iodide specificity of Zg-VIPO1. Altogether, phylogeny and structure-function data support the finding that iodoperoxidase activities evolved independently in bacterial and algal lineages, and this sheds light on the evolution of the VHPO enzyme family.
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17
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Superoxide production by a manganese-oxidizing bacterium facilitates iodide oxidation. Appl Environ Microbiol 2014; 80:2693-9. [PMID: 24561582 DOI: 10.1128/aem.00400-14] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
The release of radioactive iodine (i.e., iodine-129 and iodine-131) from nuclear reprocessing facilities is a potential threat to human health. The fate and transport of iodine are determined primarily by its redox status, but processes that affect iodine oxidation states in the environment are poorly characterized. Given the difficulty in removing electrons from iodide (I(-)), naturally occurring iodide oxidation processes require strong oxidants, such as Mn oxides or microbial enzymes. In this study, we examine iodide oxidation by a marine bacterium, Roseobacter sp. AzwK-3b, which promotes Mn(II) oxidation by catalyzing the production of extracellular superoxide (O2(-)). In the absence of Mn(2+), Roseobacter sp. AzwK-3b cultures oxidized ∼90% of the provided iodide (10 μM) within 6 days, whereas in the presence of Mn(II), iodide oxidation occurred only after Mn(IV) formation ceased. Iodide oxidation was not observed during incubations in spent medium or with whole cells under anaerobic conditions or following heat treatment (boiling). Furthermore, iodide oxidation was significantly inhibited in the presence of superoxide dismutase and diphenylene iodonium (a general inhibitor of NADH oxidoreductases). In contrast, the addition of exogenous NADH enhanced iodide oxidation. Taken together, the results indicate that iodide oxidation was mediated primarily by extracellular superoxide generated by Roseobacter sp. AzwK-3b and not by the Mn oxides formed by this organism. Considering that extracellular superoxide formation is a widespread phenomenon among marine and terrestrial bacteria, this could represent an important pathway for iodide oxidation in some environments.
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Nitschke U, Stengel DB. Iodine contributes to osmotic acclimatisation in the kelp Laminaria digitata (Phaeophyceae). PLANTA 2014; 239:521-30. [PMID: 24253307 DOI: 10.1007/s00425-013-1992-z] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2013] [Accepted: 10/28/2013] [Indexed: 06/02/2023]
Abstract
Iodide (I⁻) retained by the brown macroalga Laminaria digitata at millimolar levels, possesses antioxidant activities, but the wider physiological significance of its accumulation remains poorly understood. In its natural habitat in the lower intertidal, L. digitata experiences salinity changes and osmotic homeostasis is achieved by regulating the organic osmolyte mannitol. However, I⁻ may also holds an osmotic function. Here, impacts of hypo- and hypersaline conditions on I⁻ release from, and accumulation by, L. digitata were assessed. Additionally, mannitol accumulation was determined at high salinities, and physiological responses to externally elevated iodine concentrations and salinities were characterised by chl a fluorometry. Net I⁻ release rates increased with decreasing salinity. I⁻ was accumulated at normal (35 S A) and high salinities (50 S A); this coincided with enhanced rETRmax and qP causing pronounced photoprotection capabilities via NPQ. At 50 S A elevated tissue iodine levels impeded the well-established response of mannitol accumulation and prevented photoinhibition. Contrarily, low tissue iodine levels limited photoprotection capabilities and resulted in photoinhibition at 50 S A, even though mannitol was accumulated. The results indicate a, so far, undescribed osmotic function of I⁻ in L. digitata and, thus, multifunctional principles of this halogen in kelps. The osmotic function of mannitol may have been substituted by that of I⁻ under hypersaline conditions, suggesting a complementary role of inorganic and organic solutes under salinity stress. This study also provides first evidence that iodine accumulation in L. digitata positively affects photo-physiology.
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Affiliation(s)
- Udo Nitschke
- Botany and Plant Science, School of Natural Sciences, and Ryan Institute for Environmental, Marine and Energy Research, National University of Ireland Galway, Galway, Ireland,
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19
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Abstract
This review, with 290 references, presents the fascinating area of iodinated natural products over the past hundred years for the first time.
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Affiliation(s)
- Lishu Wang
- Key Laboratory of Tropical Marine Bio-resources and Ecology/Guangdong Key Laboratory of Marine Materia Medica/RNAM Center for Marine Microbiology
- South China Sea Institute of Oceanology
- Chinese Academy of Sciences
- Guangzhou 510301, China
- Jilin Provincial Academy of Chinese Medicine Sciences
| | - Xuefeng Zhou
- Key Laboratory of Tropical Marine Bio-resources and Ecology/Guangdong Key Laboratory of Marine Materia Medica/RNAM Center for Marine Microbiology
- South China Sea Institute of Oceanology
- Chinese Academy of Sciences
- Guangzhou 510301, China
| | - Mangaladoss Fredimoses
- Key Laboratory of Tropical Marine Bio-resources and Ecology/Guangdong Key Laboratory of Marine Materia Medica/RNAM Center for Marine Microbiology
- South China Sea Institute of Oceanology
- Chinese Academy of Sciences
- Guangzhou 510301, China
| | - Shengrong Liao
- Key Laboratory of Tropical Marine Bio-resources and Ecology/Guangdong Key Laboratory of Marine Materia Medica/RNAM Center for Marine Microbiology
- South China Sea Institute of Oceanology
- Chinese Academy of Sciences
- Guangzhou 510301, China
| | - Yonghong Liu
- Key Laboratory of Tropical Marine Bio-resources and Ecology/Guangdong Key Laboratory of Marine Materia Medica/RNAM Center for Marine Microbiology
- South China Sea Institute of Oceanology
- Chinese Academy of Sciences
- Guangzhou 510301, China
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Nitschke U, Dixneuf S, Ruth AA, Schmid M, Stengel DB. Molecular iodine (I2) emission from two Laminaria species (Phaeophyceae) and impact of irradiance and temperature on I2 emission into air and iodide release into seawater from Laminaria digitata. MARINE ENVIRONMENTAL RESEARCH 2013; 92:102-9. [PMID: 24080409 DOI: 10.1016/j.marenvres.2013.09.006] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/12/2013] [Revised: 08/29/2013] [Accepted: 09/09/2013] [Indexed: 05/22/2023]
Abstract
Kelps of the genus Laminaria accumulate iodine at high concentrations, but the iodine retaining capacity can be affected by emersion and physiological stress. In this study, I2 emission into the atmosphere from Laminaria digitata and Laminaria hyperborea was compared under controlled low irradiances and temperatures. The two species exhibited different I2 emission rates as blades of L. digitata emitted I2 at rates five times higher than those from newly-grown blades (current growth season) of L. hyperborea. I2 emission was not detectable from old blades (previous growth season) of L. hyperborea. Additionally, effects of irradiance and temperature on both I2 emission into air and net I(-) release into seawater where assessed for L. digitata while monitoring photo-physiological parameters as stress indicators. Irradiances between 30 and 120 μmol photons m(-2) s(-1) had only marginal effects on both I2 emission and I(-) release rates, but physiological stress, indicated by photoinhibition, was observed. The results suggest that the irradiances applied here were not stressful enough to impact on the iodine release. By contrast, at elevated temperatures (20 °C), photoinhibition was accompanied by an increase in I2 emission rates, but net I(-) release rates remained similar at 10-20 °C. High I2 emission rates into air and I(-) release into seawater observed from L. digitata underpin the fundamental function of this kelp as mediator of coastal iodine fluxes.
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Affiliation(s)
- Udo Nitschke
- Botany and Plant Science, School of Natural Sciences, National University of Ireland Galway, Galway, Ireland; Ryan Institute for Marine, Environmental and Energy Research, National University of Ireland Galway, Galway, Ireland.
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21
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Wever R, van der Horst MA. The role of vanadium haloperoxidases in the formation of volatile brominated compounds and their impact on the environment. Dalton Trans 2013; 42:11778-86. [PMID: 23657250 DOI: 10.1039/c3dt50525a] [Citation(s) in RCA: 72] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
Vanadium haloperoxidases differ strongly from heme peroxidases in substrate specificity and stability and in contrast to a heme group they contain the bare metal oxide vanadate as a prosthetic group. These enzymes specifically oxidize halides in the presence of hydrogen peroxide into hypohalous acids. These reactive halogen intermediates will react rapidly and aspecifically with many organic molecules. Marine algae and diatoms containing these iodo- and bromoperoxidases produce short-lived brominated methanes (bromoform, CHBr3 and dibromomethane CH2Br2) or iodinated compounds. Some seas and oceans are supersaturated with these compounds and they form an important source of bromine to the troposphere and lower stratosphere and contribute significantly to the global budget of halogenated hydrocarbons. This perspective focuses, in particular, on the biosynthesis of these volatile compounds and the direct or indirect involvement of vanadium haloperoxidases in the production of huge amounts of bromoform and dibromomethane. Some of the global sources are discussed and from the literature a picture emerges in which oxidized brominated species generated by phytoplankton, seaweeds and cyanobacteria react with dissolved organic matter in seawater, resulting in the formation of intermediate brominated compounds. These compounds are unstable and decay via a haloform reaction to form an array of volatile brominated compounds of which bromoform is the major component followed by dibromomethane.
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Affiliation(s)
- Ron Wever
- University of Amsterdam, Van't Hoff Institute for Molecular Sciences, Science Park 904, 1098 XH Amsterdam, The Netherlands.
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Wischang D, Radlow M, Hartung J. Vanadate-dependent bromoperoxidases from Ascophyllum nodosum in the synthesis of brominated phenols and pyrroles. Dalton Trans 2013; 42:11926-40. [PMID: 23881071 DOI: 10.1039/c3dt51582f] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2024]
Abstract
Bromoperoxidases from the brown alga Ascophyllum nodosum, abbreviated as V(Br)PO(AnI) and V(Br)PO(AnII), show 41% sequence homology and differ by a factor of two in the percentage of α-helical secondary structures. Protein monomers organize into homodimers for V(Br)PO(AnI) and hexamers for V(Br)PO(AnII). Bromoperoxidase II binds hydrogen peroxide and bromide by approximately one order of magnitude stronger than V(Br)PO(AnI). In oxidation catalysis, bromoperoxidases I and II turn over hydrogen peroxide and bromide similarly fast, yielding in morpholine-4-ethanesulfonic acid (MES)-buffered aqueous tert-butanol (pH 6.2) molecular bromine as reagent for electrophilic hydrocarbon bromination. Alternative compounds, such as tribromide and hypobromous acid are not sufficiently electrophilic for being directly involved in carbon-bromine bond formation. A decrease in electrophilicity from bromine via hypobromous acid to tribromide correlates in a frontier molecular orbital (FMO) analysis with larger energy gaps between the π-type HOMO of, for example, an alkene and the σ*(Br,X)-type LUMO of the bromination reagent. By using this approach, the reactivity of substrates and selectivity for carbon-bromine bond formation in reactions mediated by vanadate-dependent bromoperoxidases become predictable, as exemplified by the synthesis of bromopyrroles occurring naturally in marine sponges of the genera Agelas, Acanthella, and Axinella.
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Affiliation(s)
- Diana Wischang
- Fachbereich Chemie, Organische Chemie, Technische Universität Kaiserslautern, Erwin-Schrödinger-Straße, D-67663 Kaiserslautern, Germany
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Baharum H, Chu WC, Teo SS, Ng KY, Rahim RA, Ho CL. Molecular cloning, homology modeling and site-directed mutagenesis of vanadium-dependent bromoperoxidase (GcVBPO1) from Gracilaria changii (Rhodophyta). PHYTOCHEMISTRY 2013; 92:49-59. [PMID: 23684235 DOI: 10.1016/j.phytochem.2013.04.014] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2012] [Revised: 03/01/2013] [Accepted: 04/22/2013] [Indexed: 06/02/2023]
Abstract
Vanadium-dependent haloperoxidases belong to a class of vanadium enzymes that may have potential industrial and pharmaceutical applications due to their high stability. In this study, the 5'-flanking genomic sequence and complete reading frame encoding vanadium-dependent bromoperoxidase (GcVBPO1) was cloned from the red seaweed, Fracilaria changii, and the recombinant protein was biochemically characterized. The deduced amino acid sequence of GcVBPO1 is 1818 nucleotides in length, sharing 49% identity with the vanadium-dependent bromoperoxidases from Corralina officinalis and Cor. pilulifera, respectively. The amino acid residues associated with the binding site of vanadate cofactor were found to be conserved. The Km value of recombinant GcVBPO1 for Br(-) was 4.69 mM, while its Vmax was 10.61 μkat mg(-1) at pH 7. Substitution of Arg(379) with His(379) in the recombinant protein caused a lower affinity for Br(-), while substitution of Arg(379) with Phe(379) not only increased its affinity for Br(-) but also enabled the mutant enzyme to oxidize Cl(-). The mutant Arg(379)Phe was also found to have a lower affinity for I(-), as compared to the wild-type GcVBPO1 and mutant Arg(379)His. In addition, the Arg(379)Phe mutant has a slightly higher affinity for H2O2 compared to the wild-type GcVBPO1. Multiple cis-acting regulatory elements associated with light response, hormone signaling, and meristem expression were detected at the 5'-flanking genomic sequence of GcVBPO1. The transcript abundance of GcVBPO1 was relatively higher in seaweed samples treated with 50 parts per thousand (ppt) artificial seawater (ASW) compared to those treated in 10 and 30 ppt ASW, in support of its role in the abiotic stress response of seaweed.
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Affiliation(s)
- H Baharum
- Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor, Malaysia
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24
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Nagai K, Morimoto K, Ikegami H, Kimura H, Yotsukura N. Investigation of proteomic profiles of lamina of Ecklonia kurome (Laminariales): homology-based cross-species protein identification and analysis of the post-translational processing of vanadium-dependent bromoperoxidases using MALDI-TOF/TOF. MARINE BIOTECHNOLOGY (NEW YORK, N.Y.) 2013; 15:487-98. [PMID: 23547002 DOI: 10.1007/s10126-013-9498-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2012] [Accepted: 03/13/2013] [Indexed: 06/02/2023]
Abstract
Proteomic profiles of the lamina of Ecklonia kurome Okamura, one of the Japanese dominant laminarialean kelps, were investigated by two-dimensional electrophoresis (2-DE) and MALDI-TOF/TOF. Due to the absence of E. kurome DNA or protein databases, homology-based cross-species protein identification was performed using a combination of three database-searching algorithms, Mascot peptide mass fingerprinting, Mascot MS/MS ion search, and mass spectrometry-based BLAST. Proteins were extracted from the lamina by an ethanol/phenol method and subjected to 2-DE (pI 4-7, 10 % polyacrylamide gel). More than 700 spots were detected in the 2-DE gel with CBB, and 93 spots (24 proteins) were successfully identified by MALDI-TOF/TOF and the cross-species database searching. The identified proteins mainly consisted of cytoplasmic carbohydrate metabolic enzymes, chloroplast proteins involved in photosynthesis, and haloperoxidases. Interestingly, vanadium-dependent bromoperoxidases (vBPO), which is thought to be involved in halogen uptake, synthesis of halogenated products, and detoxification of reactive oxygen species, were separated into at least 23 different spots. By comparing mass spectra, amino acid sequences predicted from tandem mass spectra and haloperoxidase activities of the vBPOs, we found that (1) at least two types of vBPOs were expressed in the lamina of E. kurome and (2) two pro-vBPOs might be activated by specific cleavage at N- and C-terminal regions.
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Affiliation(s)
- Kouhei Nagai
- Department of Genetic Engineering, Faculity of Biology-Oriented Science and Technology, Kinki University, Kinokawa, Wakayama 649-6493, Japan
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25
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Küpper FC, Carpenter LJ, Leblanc C, Toyama C, Uchida Y, Maskrey BH, Robinson J, Verhaeghe EF, Malin G, Luther GW, Kroneck PMH, Kloareg B, Meyer-Klaucke W, Muramatsu Y, Megson IL, Potin P, Feiters MC. In vivo speciation studies and antioxidant properties of bromine in Laminaria digitata reinforce the significance of iodine accumulation for kelps. JOURNAL OF EXPERIMENTAL BOTANY 2013; 64:2653-64. [PMID: 23606364 PMCID: PMC3697951 DOI: 10.1093/jxb/ert110] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
The metabolism of bromine in marine brown algae remains poorly understood. This contrasts with the recent finding that the accumulation of iodide in the brown alga Laminaria serves the provision of an inorganic antioxidant - the first case documented from a living system. The aim of this study was to use an interdisciplinary array of techniques to study the chemical speciation, transformation, and function of bromine in Laminaria and to investigate the link between bromine and iodine metabolism, in particular in the antioxidant context. First, bromine and iodine levels in different Laminaria tissues were compared by inductively coupled plasma MS. Using in vivo X-ray absorption spectroscopy, it was found that, similarly to iodine, bromine is predominantly present in this alga in the form of bromide, albeit at lower concentrations, and that it shows similar behaviour upon oxidative stress. However, from a thermodynamic and kinetic standpoint, supported by in vitro and reconstituted in vivo assays, bromide is less suitable than iodide as an antioxidant against most reactive oxygen species except superoxide, possibly explaining why kelps prefer to accumulate iodide. This constitutes the first-ever study exploring the potential antioxidant function of bromide in a living system and other potential physiological roles. Given the tissue-specific differences observed in the content and speciation of bromine, it is concluded that the bromide uptake mechanism is different from the vanadium iodoperoxidase-mediated uptake of iodide in L. digitata and that its function is likely to be complementary to the iodide antioxidant system for detoxifying superoxide.
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Affiliation(s)
- Frithjof C Küpper
- Oceanlab, University of Aberdeen, Main Street, Newburgh, AB41 6AA, Scotland, UK.
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26
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Wischang D, Radlow M, Schulz H, Vilter H, Viehweger L, Altmeyer MO, Kegler C, Herrmann J, Müller R, Gaillard F, Delage L, Leblanc C, Hartung J. Molecular cloning, structure, and reactivity of the second bromoperoxidase from Ascophyllum nodosum. Bioorg Chem 2012; 44:25-34. [PMID: 22884431 DOI: 10.1016/j.bioorg.2012.05.003] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2012] [Revised: 04/30/2012] [Accepted: 05/21/2012] [Indexed: 11/16/2022]
Abstract
The sequence of bromoperoxidase II from the brown alga Ascophyllum nodosum was determined from a full length cloned cDNA, obtained from a tandem mass spectrometry RT-PCR-approach. The clone encodes a protein composed of 641 amino-acids, which provides a mature 67.4 kDa-bromoperoxidase II-protein (620 amino-acids). Based on 43% sequence homology with the previously characterized bromoperoxidase I from A. nodosum, a tertiary structure was modeled for the bromoperoxidase II. The structural model was refined on the basis of results from gel filtration and vanadate-binding studies, showing that the bromoperoxidase II is a hexameric metalloprotein, which binds 0.5 equivalents of vanadate as cofactor per 67.4 kDa-subunit, for catalyzing oxidation of bromide by hydrogen peroxide in a bi-bi-ping-pong mechanism (k(cat) = 153 s(-1), 22 °C, pH 5.9). Bromide thereby is converted into a bromoelectrophile of reactivity similar to molecular bromine, based on competition kinetic data on phenol bromination and correlation analysis. Reactivity provided by the bromoperoxidase II mimics biosynthesis of methyl 4-bromopyrrole-2-carboxylate, a natural product isolated from the marine sponge Axinella tenuidigitata.
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Affiliation(s)
- Diana Wischang
- Fachbereich Chemie, Organische Chemie, Technische Universität Kaiserslautern, Erwin-Schrödinger-Strasse, D-67663 Kaiserslautern, Germany
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Absorption of radionuclides from the Fukushima nuclear accident by a novel algal strain. PLoS One 2012; 7:e44200. [PMID: 22984475 PMCID: PMC3440386 DOI: 10.1371/journal.pone.0044200] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2012] [Accepted: 07/30/2012] [Indexed: 12/04/2022] Open
Abstract
Large quantities of radionuclides have leaked from the Fukushima Daiichi Nuclear Power Plant into the surrounding environment. Effective prevention of health hazards resulting from radiation exposure will require the development of efficient and economical methods for decontaminating radioactive wastewater and aquatic ecosystems. Here we describe the accumulation of water-soluble radionuclides released by nuclear reactors by a novel strain of alga. The newly discovered green microalgae, Parachlorella sp. binos (Binos) has a thick alginate-containing extracellular matrix and abundant chloroplasts. When this strain was cultured with radioiodine, a light-dependent uptake of radioiodine was observed. In dark conditions, radioiodine uptake was induced by addition of hydrogen superoxide. High-resolution secondary ion mass spectrometry (SIMS) showed a localization of accumulated iodine in the cytosol. This alga also exhibited highly efficient incorporation of the radioactive isotopes strontium and cesium in a light-independent manner. SIMS analysis showed that strontium was distributed in the extracellular matrix of Binos. Finally we also showed the ability of this strain to accumulate radioactive nuclides from water and soil samples collected from a heavily contaminated area in Fukushima. Our results demonstrate that Binos could be applied to the decontamination of iodine, strontium and cesium radioisotopes, which are most commonly encountered after nuclear reactor accidents.
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Shin K, Nakano M, Yamauchi K, Toida T, Iwatsuki K. Antibacterial activity of the lactoperoxidase system combined with edible Laminaria hot-water extract as a source of halide ions. Biosci Biotechnol Biochem 2012; 76:404-6. [PMID: 22313780 DOI: 10.1271/bbb.110735] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
Hot-water extracts prepared from nine out of 12 samples of dried edible Laminaria reduced the viable numbers of Aggregatibacter actinomycetemcomitans, Staphylococcus aureus, and Esherichia coli below the detection limit after incubation for 5 min when combined with lactoperoxidase, glucose oxidase, and glucose. Some extracts showed higher bactericidal activity and a higher OI(-) concentration in the assay mixture after ultrafiltration.
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Affiliation(s)
- Kouichirou Shin
- Food Science & Technology Institute, Morinaga Milk Industry Co, Ltd, Zama, Kanagawa, Japan.
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29
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Cock JM, Arun A, Godfroy O, Macaisne N, Strittmatter M, Peters AF, Coelho SM. Genomics of brown algae: current advances and future prospects. Genes Genomics 2012. [DOI: 10.1007/s13258-010-0225-0] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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30
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Seaweed Responses to Environmental Stress: Reactive Oxygen and Antioxidative Strategies. ECOLOGICAL STUDIES 2012. [DOI: 10.1007/978-3-642-28451-9_6] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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31
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Küpper FC, Feiters MC, Olofsson B, Kaiho T, Yanagida S, Zimmermann MB, Carpenter LJ, Luther GW, Lu Z, Jonsson M, Kloo L. Commemorating Two Centuries of Iodine Research: An Interdisciplinary Overview of Current Research. Angew Chem Int Ed Engl 2011; 50:11598-620. [DOI: 10.1002/anie.201100028] [Citation(s) in RCA: 241] [Impact Index Per Article: 18.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2011] [Indexed: 11/10/2022]
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Küpper FC, Feiters MC, Olofsson B, Kaiho T, Yanagida S, Zimmermann MB, Carpenter LJ, Luther GW, Lu Z, Jonsson M, Kloo L. Zweihundert Jahre Iodforschung: ein interdisziplinärer Überblick über die derzeitige Forschung. Angew Chem Int Ed Engl 2011. [DOI: 10.1002/ange.201100028] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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Iodide accumulation by aerobic bacteria isolated from subsurface sediments of a 129I-contaminated aquifer at the Savannah River site, South Carolina. Appl Environ Microbiol 2011; 77:2153-60. [PMID: 21278282 DOI: 10.1128/aem.02164-10] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
(129)I is of major concern because of its mobility in the environment, excessive inventory, toxicity (it accumulates in the thyroid), and long half-life (∼16 million years). The aim of this study was to determine if bacteria from a (129)I-contaminated oxic aquifer at the F area of the U.S. Department of Energy's Savannah River Site, SC, could accumulate iodide at environmentally relevant concentrations (0.1 μM I(-)). Iodide accumulation capability was found in 3 out of 136 aerobic bacterial strains isolated from the F area that were closely related to Streptomyces/Kitasatospora spp., Bacillus mycoides, and Ralstonia/Cupriavidus spp. Two previously described iodide-accumulating marine strains, a Flexibacter aggregans strain and an Arenibacter troitsensis strain, accumulated 2 to 50% total iodide (0.1 μM), whereas the F-area strains accumulated just 0.2 to 2.0%. Iodide accumulation by FA-30 was stimulated by the addition of H(2)O(2), was not inhibited by chloride ions (27 mM), did not exhibit substrate saturation kinetics with regard to I(-) concentration (up to 10 μM I(-)), and increased at pH values of <6. Overall, the data indicate that I(-) accumulation likely results from electrophilic substitution of cellular organic molecules. This study demonstrates that readily culturable, aerobic bacteria of the F-area aquifer do not accumulate significant amounts of iodide; however, this mechanism may contribute to the long-term fate and transport of (129)I and to the biogeochemical cycling of iodine over geologic time.
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Cock JM, Sterck L, Rouzé P, Scornet D, Allen AE, Amoutzias G, Anthouard V, Artiguenave F, Aury JM, Badger JH, Beszteri B, Billiau K, Bonnet E, Bothwell JH, Bowler C, Boyen C, Brownlee C, Carrano CJ, Charrier B, Cho GY, Coelho SM, Collén J, Corre E, Da Silva C, Delage L, Delaroque N, Dittami SM, Doulbeau S, Elias M, Farnham G, Gachon CMM, Gschloessl B, Heesch S, Jabbari K, Jubin C, Kawai H, Kimura K, Kloareg B, Küpper FC, Lang D, Le Bail A, Leblanc C, Lerouge P, Lohr M, Lopez PJ, Martens C, Maumus F, Michel G, Miranda-Saavedra D, Morales J, Moreau H, Motomura T, Nagasato C, Napoli CA, Nelson DR, Nyvall-Collén P, Peters AF, Pommier C, Potin P, Poulain J, Quesneville H, Read B, Rensing SA, Ritter A, Rousvoal S, Samanta M, Samson G, Schroeder DC, Ségurens B, Strittmatter M, Tonon T, Tregear JW, Valentin K, von Dassow P, Yamagishi T, Van de Peer Y, Wincker P. The Ectocarpus genome and the independent evolution of multicellularity in brown algae. Nature 2010; 465:617-21. [PMID: 20520714 DOI: 10.1038/nature09016] [Citation(s) in RCA: 518] [Impact Index Per Article: 37.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2009] [Accepted: 03/15/2010] [Indexed: 01/05/2023]
Abstract
Brown algae (Phaeophyceae) are complex photosynthetic organisms with a very different evolutionary history to green plants, to which they are only distantly related. These seaweeds are the dominant species in rocky coastal ecosystems and they exhibit many interesting adaptations to these, often harsh, environments. Brown algae are also one of only a small number of eukaryotic lineages that have evolved complex multicellularity (Fig. 1). We report the 214 million base pair (Mbp) genome sequence of the filamentous seaweed Ectocarpus siliculosus (Dillwyn) Lyngbye, a model organism for brown algae, closely related to the kelps (Fig. 1). Genome features such as the presence of an extended set of light-harvesting and pigment biosynthesis genes and new metabolic processes such as halide metabolism help explain the ability of this organism to cope with the highly variable tidal environment. The evolution of multicellularity in this lineage is correlated with the presence of a rich array of signal transduction genes. Of particular interest is the presence of a family of receptor kinases, as the independent evolution of related molecules has been linked with the emergence of multicellularity in both the animal and green plant lineages. The Ectocarpus genome sequence represents an important step towards developing this organism as a model species, providing the possibility to combine genomic and genetic approaches to explore these and other aspects of brown algal biology further.
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Affiliation(s)
- J Mark Cock
- UPMC Université Paris 6, The Marine Plants and Biomolecules Laboratory, UMR 7139, Station Biologique de Roscoff, Place Georges Teissier, BP74, 29682 Roscoff Cedex, France.
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Miller AEM, Heyland A. Endocrine interactions between plants and animals: Implications of exogenous hormone sources for the evolution of hormone signaling. Gen Comp Endocrinol 2010; 166:455-61. [PMID: 19818788 DOI: 10.1016/j.ygcen.2009.09.016] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/09/2009] [Accepted: 09/25/2009] [Indexed: 01/06/2023]
Abstract
Hormones are central to animal physiology, metabolism and development. Details on signal transduction systems and regulation of hormone synthesis, activation and release have only been studied for a small number of animal groups, notably arthropods and chordates. However, a significant body of literature suggests that hormonal signaling systems are not restricted to these phyla. For example, work on several echinoderm species shows that exogenous thyroid hormones (THs) affect larval development and metamorphosis and our new data provide strong evidence for endogenous synthesis of THs in sea urchin larvae. In addition to these endogenous sources, these larvae obtain THs when they consume phytoplankton. Another example of an exogenously acquired hormone or their precursors is in insect and arthropod signaling. Sterols from plants are essential for the synthesis of ecdysteroids, a crucial group of insect morphogenic steroids. The availability of a hormone or hormone precursor from food has implications for understanding hormone function and the evolution of hormonal signaling in animals. For hormone function, it creates an important link between the environment and the regulation of internal homeostatic systems. For the evolution of hormonal signaling it helps us to better understand how complex endocrine mechanisms may have evolved.
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Affiliation(s)
- Ashley E M Miller
- University of Guelph, Integrative Biology, Guelph, Ont., Canada N1G2W1.
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La Barre S, Potin P, Leblanc C, Delage L. The halogenated metabolism of brown algae (Phaeophyta), its biological importance and its environmental significance. Mar Drugs 2010; 8:988-1010. [PMID: 20479964 PMCID: PMC2866472 DOI: 10.3390/md8040988] [Citation(s) in RCA: 82] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2010] [Revised: 03/13/2010] [Accepted: 03/25/2010] [Indexed: 11/16/2022] Open
Abstract
Brown algae represent a major component of littoral and sublittoral zones in temperate and subtropical ecosystems. An essential adaptive feature of this independent eukaryotic lineage is the ability to couple oxidative reactions resulting from exposure to sunlight and air with the halogenations of various substrates, thereby addressing various biotic and abiotic stresses i.e., defense against predators, tissue repair, holdfast adhesion, and protection against reactive species generated by oxidative processes. Whereas marine organisms mainly make use of bromine to increase the biological activity of secondary metabolites, some orders of brown algae such as Laminariales have also developed a striking capability to accumulate and to use iodine in physiological adaptations to stress. We review selected aspects of the halogenated metabolism of macrophytic brown algae in the light of the most recent results, which point toward novel functions for iodide accumulation in kelps and the importance of bromination in cell wall modifications and adhesion properties of brown algal propagules. The importance of halogen speciation processes ranges from microbiology to biogeochemistry, through enzymology, cellular biology and ecotoxicology.
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Affiliation(s)
- Stéphane La Barre
- Université Pierre et Marie Curie-Paris 6, UMR 7139 Végétaux marins et Biomolécules, Station Biologique F-29682, Roscoff, France; E-Mails:
(P.P.);
(C.L.);
(L.D.)
- CNRS, UMR 7139 Végétaux marins et Biomolécules, Station Biologique F-29682, Roscoff, France
| | - Philippe Potin
- Université Pierre et Marie Curie-Paris 6, UMR 7139 Végétaux marins et Biomolécules, Station Biologique F-29682, Roscoff, France; E-Mails:
(P.P.);
(C.L.);
(L.D.)
- CNRS, UMR 7139 Végétaux marins et Biomolécules, Station Biologique F-29682, Roscoff, France
| | - Catherine Leblanc
- Université Pierre et Marie Curie-Paris 6, UMR 7139 Végétaux marins et Biomolécules, Station Biologique F-29682, Roscoff, France; E-Mails:
(P.P.);
(C.L.);
(L.D.)
- CNRS, UMR 7139 Végétaux marins et Biomolécules, Station Biologique F-29682, Roscoff, France
| | - Ludovic Delage
- Université Pierre et Marie Curie-Paris 6, UMR 7139 Végétaux marins et Biomolécules, Station Biologique F-29682, Roscoff, France; E-Mails:
(P.P.);
(C.L.);
(L.D.)
- CNRS, UMR 7139 Végétaux marins et Biomolécules, Station Biologique F-29682, Roscoff, France
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Dittami SM, Scornet D, Petit JL, Ségurens B, Da Silva C, Corre E, Dondrup M, Glatting KH, König R, Sterck L, Rouzé P, Van de Peer Y, Cock JM, Boyen C, Tonon T. Global expression analysis of the brown alga Ectocarpus siliculosus (Phaeophyceae) reveals large-scale reprogramming of the transcriptome in response to abiotic stress. Genome Biol 2009; 10:R66. [PMID: 19531237 PMCID: PMC2718500 DOI: 10.1186/gb-2009-10-6-r66] [Citation(s) in RCA: 92] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2008] [Revised: 02/04/2009] [Accepted: 06/16/2009] [Indexed: 01/03/2023] Open
Abstract
BACKGROUND Brown algae (Phaeophyceae) are phylogenetically distant from red and green algae and an important component of the coastal ecosystem. They have developed unique mechanisms that allow them to inhabit the intertidal zone, an environment with high levels of abiotic stress. Ectocarpus siliculosus is being established as a genetic and genomic model for the brown algal lineage, but little is known about its response to abiotic stress. RESULTS Here we examine the transcriptomic changes that occur during the short-term acclimation of E. siliculosus to three different abiotic stress conditions (hyposaline, hypersaline and oxidative stress). Our results show that almost 70% of the expressed genes are regulated in response to at least one of these stressors. Although there are several common elements with terrestrial plants, such as repression of growth-related genes, switching from primary production to protein and nutrient recycling processes, and induction of genes involved in vesicular trafficking, many of the stress-regulated genes are either not known to respond to stress in other organisms or are have been found exclusively in E. siliculosus. CONCLUSIONS This first large-scale transcriptomic study of a brown alga demonstrates that, unlike terrestrial plants, E. siliculosus undergoes extensive reprogramming of its transcriptome during the acclimation to mild abiotic stress. We identify several new genes and pathways with a putative function in the stress response and thus pave the way for more detailed investigations of the mechanisms underlying the stress tolerance of brown algae.
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Affiliation(s)
- Simon M Dittami
- UPMC Univ Paris 6, UMR 7139 Végétaux marins et Biomolécules, Station Biologique, 29680 Roscoff, France
- CNRS, UMR 7139 Végétaux marins et Biomolécules, Station Biologique, 29680 Roscoff, France
| | - Delphine Scornet
- UPMC Univ Paris 6, UMR 7139 Végétaux marins et Biomolécules, Station Biologique, 29680 Roscoff, France
- CNRS, UMR 7139 Végétaux marins et Biomolécules, Station Biologique, 29680 Roscoff, France
| | - Jean-Louis Petit
- CEA, DSV, Institut de Génomique, Génoscope, rue Gaston Crémieux, CP5706, 91057 Evry, France
- CNRS, UMR 8030 Génomique métabolique des genomes, rue Gaston Crémieux, CP5706, 91057 Evry, France
- Université d'Evry, UMR 8030 Génomique métabolique des genomes, 91057 Evry, France
| | - Béatrice Ségurens
- CEA, DSV, Institut de Génomique, Génoscope, rue Gaston Crémieux, CP5706, 91057 Evry, France
- CNRS, UMR 8030 Génomique métabolique des genomes, rue Gaston Crémieux, CP5706, 91057 Evry, France
- Université d'Evry, UMR 8030 Génomique métabolique des genomes, 91057 Evry, France
| | - Corinne Da Silva
- CEA, DSV, Institut de Génomique, Génoscope, rue Gaston Crémieux, CP5706, 91057 Evry, France
- CNRS, UMR 8030 Génomique métabolique des genomes, rue Gaston Crémieux, CP5706, 91057 Evry, France
- Université d'Evry, UMR 8030 Génomique métabolique des genomes, 91057 Evry, France
| | - Erwan Corre
- SIG-FR 2424 CNRS UPMC, Station Biologique, 29680 Roscoff, France
| | - Michael Dondrup
- Center for Biotechnology (CeBiTec), University of Bielefeld, 33594 Bielefeld, Germany
| | - Karl-Heinz Glatting
- German Cancer Research Center (DKFZ), Im Neuenheimer Feld 580, 69120 Heidelberg, Germany
| | - Rainer König
- German Cancer Research Center (DKFZ), Im Neuenheimer Feld 580, 69120 Heidelberg, Germany
| | - Lieven Sterck
- VIB Department of Plant Systems Biology, Ghent University, 9052 Ghent, Belgium
| | - Pierre Rouzé
- VIB Department of Plant Systems Biology, Ghent University, 9052 Ghent, Belgium
| | - Yves Van de Peer
- VIB Department of Plant Systems Biology, Ghent University, 9052 Ghent, Belgium
| | - J Mark Cock
- UPMC Univ Paris 6, UMR 7139 Végétaux marins et Biomolécules, Station Biologique, 29680 Roscoff, France
- CNRS, UMR 7139 Végétaux marins et Biomolécules, Station Biologique, 29680 Roscoff, France
| | - Catherine Boyen
- UPMC Univ Paris 6, UMR 7139 Végétaux marins et Biomolécules, Station Biologique, 29680 Roscoff, France
- CNRS, UMR 7139 Végétaux marins et Biomolécules, Station Biologique, 29680 Roscoff, France
| | - Thierry Tonon
- UPMC Univ Paris 6, UMR 7139 Végétaux marins et Biomolécules, Station Biologique, 29680 Roscoff, France
- CNRS, UMR 7139 Végétaux marins et Biomolécules, Station Biologique, 29680 Roscoff, France
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Winter JM, Moore BS. Exploring the chemistry and biology of vanadium-dependent haloperoxidases. J Biol Chem 2009; 284:18577-81. [PMID: 19363038 DOI: 10.1074/jbc.r109.001602] [Citation(s) in RCA: 164] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
Nature has developed an exquisite array of methods to introduce halogen atoms into organic compounds. Most of these enzymes are oxidative and require either hydrogen peroxide or molecular oxygen as a cosubstrate to generate a reactive halogen atom for catalysis. Vanadium-dependent haloperoxidases contain a vanadate prosthetic group and utilize hydrogen peroxide to oxidize a halide ion into a reactive electrophilic intermediate. These metalloenzymes have a large distribution in nature, where they are present in macroalgae, fungi, and bacteria, but have been exclusively characterized in eukaryotes. In this minireview, we highlight the chemistry and biology of vanadium-dependent haloperoxidases from fungi and marine algae and the emergence of new bacterial members that extend the biological function of these poorly understood halogenating enzymes.
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Affiliation(s)
- Jaclyn M Winter
- Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California at San Diego, La Jolla, California 92093, USA
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Wagner C, El Omari M, König GM. Biohalogenation: nature's way to synthesize halogenated metabolites. JOURNAL OF NATURAL PRODUCTS 2009; 72:540-553. [PMID: 19245259 DOI: 10.1021/np800651m] [Citation(s) in RCA: 156] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Halogenated natural products are widely distributed in nature, some of them showing potent biological activities. Incorporation of halogen atoms in drug leads is a common strategy to modify molecules in order to vary their bioactivities and specificities. Chemical halogenation, however, often requires harsh reaction conditions and results in unwanted byproduct formation. It is thus of great interest to investigate the biosynthesis of halogenated natural products and the biotechnological potential of halogenating enzymes. This review aims to give a comprehensive overview on the current knowledge concerning biological halogenations.
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Affiliation(s)
- Claudia Wagner
- Institute for Pharmaceutical Biology, University of Bonn, Nussallee 6, D-53115 Bonn, Germany
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Sosa-Torres ME, Kroneck PMH. Interaction of Cyanide with Enzymes Containing Vanadium, Manganese, Non-Heme Iron, and Zinc. METAL-CARBON BONDS IN ENZYMES AND COFACTORS 2009. [DOI: 10.1039/9781847559333-00363] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
Since the early discovery of Prussian Blue, cyano transition metal complexes have played a fundamental role in coordination chemistry. They represent important compounds with fascinating chemical and physical properties which turn them into valuable tools for both chemists and biologists. HCN as a precursor in prebiotic chemistry has gained interest in view of its polymers being involved in the formation of amino acids, purines, and orotic acid, a biosynthetic precursor of uracil. Clearly, the rapid formation of adenine by aqueous polymerization of HCN is one of the key discoveries in these experiments. The cyanide anion is usually toxic for most aerobic organisms because of its inhibitory effects on respiratory enzymes, but as a substrate it is an important source of carbon and nitrogen for microorganisms, fungi and plants. Most interestingly, the cyanide anion is a ligand of important metal-dependent biomolecules, such as the hydrogenases and the cobalt site in vitamin B12.
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Affiliation(s)
- Martha E. Sosa-Torres
- Facultad de Química, Universidad Nacional Autónoma de México, Ciudad Universitaria Coyoacán, 04510, D.F. México México
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Salgado LT, Cinelli LP, Viana NB, Tomazetto de Carvalho R, De Souza Mourão PA, Teixeira VL, Farina M, Filho AGMA. A VANADIUM BROMOPEROXIDASE CATALYZES THE FORMATION OF HIGH-MOLECULAR-WEIGHT COMPLEXES BETWEEN BROWN ALGAL PHENOLIC SUBSTANCES AND ALGINATES(1). JOURNAL OF PHYCOLOGY 2009; 45:193-202. [PMID: 27033657 DOI: 10.1111/j.1529-8817.2008.00642.x] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
The interaction between phenolic substances (PS) and alginates (ALG) has been suggested to play a role in the structure of the cell walls of brown seaweeds. However, no clear evidence for this interaction was reported. Vanadium bromoperoxidase (VBPO) has been proposed as a possible catalyst for the binding of PS to ALG. In this work, we studied the interaction between PS and ALG from brown algae using size exclusion chromatography (SEC) and optical tweezers microscopy. The analysis by SEC revealed that ALG forms a high-molecular-weight complex with PS. To study the formation of this molecular complex, we investigated the in vitro interaction of purified ALG from Fucus vesiculosus L. with purified PS from Padina gymnospora (Kütz.) Sond., in the presence or absence of VBPO. The interaction between PS and ALG only occurred when VBPO was added, indicating that the enzyme is essential for the binding process. The interaction of these molecules led to a reduction in ALG viscosity. We propose that VBPO promotes the binding of PS molecules to the ALG uronic acids residues, and we also suggest that PS are components of the brown algal cell walls.
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Affiliation(s)
- Leonardo Tavares Salgado
- Instituto de Pesquisas Jardim Botânico do Rio de Janeiro, Diretoria de Pesquisas, MMA, 22460-030, Rio de Janeiro, BrasilLaboratório de Tecido Conjuntivo, Hospital Universitário Clementino Fraga Filho (HUCFF), Instituto de Bioquímica Médica (IBqM), 21941-590, UFRJ, Rio de Janeiro, BrasilLaboratório de Pinças Ópticas-COPEA, ICB/Instituto de Física, 21941-972, UFRJ, Rio de Janeiro, BrasilInstituto de Pesquisas Jardim Botânico do Rio de Janeiro, Diretoria de Pesquisas, MMA, 22460-030, Rio de Janeiro, BrasilLaboratório de Tecido Conjuntivo, HUCFF, IBqM, 21941-590, UFRJ, Rio de Janeiro, BrasilDepartamento de Biologia Marinha, Instituto de Biologia, 24001-970, Universidade Federal Fluminense, Niterói, BrasilLaboratório de Biomineralização, ICB, 21941-590, UFRJ, Rio de Janeiro, BrasilInstituto de Pesquisas Jardim Botânico do Rio de Janeiro, Diretoria de Pesquisas, MMA, 22460-030, Rio de Janeiro, Brasil
| | - Leonardo Paes Cinelli
- Instituto de Pesquisas Jardim Botânico do Rio de Janeiro, Diretoria de Pesquisas, MMA, 22460-030, Rio de Janeiro, BrasilLaboratório de Tecido Conjuntivo, Hospital Universitário Clementino Fraga Filho (HUCFF), Instituto de Bioquímica Médica (IBqM), 21941-590, UFRJ, Rio de Janeiro, BrasilLaboratório de Pinças Ópticas-COPEA, ICB/Instituto de Física, 21941-972, UFRJ, Rio de Janeiro, BrasilInstituto de Pesquisas Jardim Botânico do Rio de Janeiro, Diretoria de Pesquisas, MMA, 22460-030, Rio de Janeiro, BrasilLaboratório de Tecido Conjuntivo, HUCFF, IBqM, 21941-590, UFRJ, Rio de Janeiro, BrasilDepartamento de Biologia Marinha, Instituto de Biologia, 24001-970, Universidade Federal Fluminense, Niterói, BrasilLaboratório de Biomineralização, ICB, 21941-590, UFRJ, Rio de Janeiro, BrasilInstituto de Pesquisas Jardim Botânico do Rio de Janeiro, Diretoria de Pesquisas, MMA, 22460-030, Rio de Janeiro, Brasil
| | - Nathan Bessa Viana
- Instituto de Pesquisas Jardim Botânico do Rio de Janeiro, Diretoria de Pesquisas, MMA, 22460-030, Rio de Janeiro, BrasilLaboratório de Tecido Conjuntivo, Hospital Universitário Clementino Fraga Filho (HUCFF), Instituto de Bioquímica Médica (IBqM), 21941-590, UFRJ, Rio de Janeiro, BrasilLaboratório de Pinças Ópticas-COPEA, ICB/Instituto de Física, 21941-972, UFRJ, Rio de Janeiro, BrasilInstituto de Pesquisas Jardim Botânico do Rio de Janeiro, Diretoria de Pesquisas, MMA, 22460-030, Rio de Janeiro, BrasilLaboratório de Tecido Conjuntivo, HUCFF, IBqM, 21941-590, UFRJ, Rio de Janeiro, BrasilDepartamento de Biologia Marinha, Instituto de Biologia, 24001-970, Universidade Federal Fluminense, Niterói, BrasilLaboratório de Biomineralização, ICB, 21941-590, UFRJ, Rio de Janeiro, BrasilInstituto de Pesquisas Jardim Botânico do Rio de Janeiro, Diretoria de Pesquisas, MMA, 22460-030, Rio de Janeiro, Brasil
| | - Rodrigo Tomazetto de Carvalho
- Instituto de Pesquisas Jardim Botânico do Rio de Janeiro, Diretoria de Pesquisas, MMA, 22460-030, Rio de Janeiro, BrasilLaboratório de Tecido Conjuntivo, Hospital Universitário Clementino Fraga Filho (HUCFF), Instituto de Bioquímica Médica (IBqM), 21941-590, UFRJ, Rio de Janeiro, BrasilLaboratório de Pinças Ópticas-COPEA, ICB/Instituto de Física, 21941-972, UFRJ, Rio de Janeiro, BrasilInstituto de Pesquisas Jardim Botânico do Rio de Janeiro, Diretoria de Pesquisas, MMA, 22460-030, Rio de Janeiro, BrasilLaboratório de Tecido Conjuntivo, HUCFF, IBqM, 21941-590, UFRJ, Rio de Janeiro, BrasilDepartamento de Biologia Marinha, Instituto de Biologia, 24001-970, Universidade Federal Fluminense, Niterói, BrasilLaboratório de Biomineralização, ICB, 21941-590, UFRJ, Rio de Janeiro, BrasilInstituto de Pesquisas Jardim Botânico do Rio de Janeiro, Diretoria de Pesquisas, MMA, 22460-030, Rio de Janeiro, Brasil
| | - Paulo Antônio De Souza Mourão
- Instituto de Pesquisas Jardim Botânico do Rio de Janeiro, Diretoria de Pesquisas, MMA, 22460-030, Rio de Janeiro, BrasilLaboratório de Tecido Conjuntivo, Hospital Universitário Clementino Fraga Filho (HUCFF), Instituto de Bioquímica Médica (IBqM), 21941-590, UFRJ, Rio de Janeiro, BrasilLaboratório de Pinças Ópticas-COPEA, ICB/Instituto de Física, 21941-972, UFRJ, Rio de Janeiro, BrasilInstituto de Pesquisas Jardim Botânico do Rio de Janeiro, Diretoria de Pesquisas, MMA, 22460-030, Rio de Janeiro, BrasilLaboratório de Tecido Conjuntivo, HUCFF, IBqM, 21941-590, UFRJ, Rio de Janeiro, BrasilDepartamento de Biologia Marinha, Instituto de Biologia, 24001-970, Universidade Federal Fluminense, Niterói, BrasilLaboratório de Biomineralização, ICB, 21941-590, UFRJ, Rio de Janeiro, BrasilInstituto de Pesquisas Jardim Botânico do Rio de Janeiro, Diretoria de Pesquisas, MMA, 22460-030, Rio de Janeiro, Brasil
| | - Valéria Laneuville Teixeira
- Instituto de Pesquisas Jardim Botânico do Rio de Janeiro, Diretoria de Pesquisas, MMA, 22460-030, Rio de Janeiro, BrasilLaboratório de Tecido Conjuntivo, Hospital Universitário Clementino Fraga Filho (HUCFF), Instituto de Bioquímica Médica (IBqM), 21941-590, UFRJ, Rio de Janeiro, BrasilLaboratório de Pinças Ópticas-COPEA, ICB/Instituto de Física, 21941-972, UFRJ, Rio de Janeiro, BrasilInstituto de Pesquisas Jardim Botânico do Rio de Janeiro, Diretoria de Pesquisas, MMA, 22460-030, Rio de Janeiro, BrasilLaboratório de Tecido Conjuntivo, HUCFF, IBqM, 21941-590, UFRJ, Rio de Janeiro, BrasilDepartamento de Biologia Marinha, Instituto de Biologia, 24001-970, Universidade Federal Fluminense, Niterói, BrasilLaboratório de Biomineralização, ICB, 21941-590, UFRJ, Rio de Janeiro, BrasilInstituto de Pesquisas Jardim Botânico do Rio de Janeiro, Diretoria de Pesquisas, MMA, 22460-030, Rio de Janeiro, Brasil
| | - Marcos Farina
- Instituto de Pesquisas Jardim Botânico do Rio de Janeiro, Diretoria de Pesquisas, MMA, 22460-030, Rio de Janeiro, BrasilLaboratório de Tecido Conjuntivo, Hospital Universitário Clementino Fraga Filho (HUCFF), Instituto de Bioquímica Médica (IBqM), 21941-590, UFRJ, Rio de Janeiro, BrasilLaboratório de Pinças Ópticas-COPEA, ICB/Instituto de Física, 21941-972, UFRJ, Rio de Janeiro, BrasilInstituto de Pesquisas Jardim Botânico do Rio de Janeiro, Diretoria de Pesquisas, MMA, 22460-030, Rio de Janeiro, BrasilLaboratório de Tecido Conjuntivo, HUCFF, IBqM, 21941-590, UFRJ, Rio de Janeiro, BrasilDepartamento de Biologia Marinha, Instituto de Biologia, 24001-970, Universidade Federal Fluminense, Niterói, BrasilLaboratório de Biomineralização, ICB, 21941-590, UFRJ, Rio de Janeiro, BrasilInstituto de Pesquisas Jardim Botânico do Rio de Janeiro, Diretoria de Pesquisas, MMA, 22460-030, Rio de Janeiro, Brasil
| | - And Gilberto Menezes Amado Filho
- Instituto de Pesquisas Jardim Botânico do Rio de Janeiro, Diretoria de Pesquisas, MMA, 22460-030, Rio de Janeiro, BrasilLaboratório de Tecido Conjuntivo, Hospital Universitário Clementino Fraga Filho (HUCFF), Instituto de Bioquímica Médica (IBqM), 21941-590, UFRJ, Rio de Janeiro, BrasilLaboratório de Pinças Ópticas-COPEA, ICB/Instituto de Física, 21941-972, UFRJ, Rio de Janeiro, BrasilInstituto de Pesquisas Jardim Botânico do Rio de Janeiro, Diretoria de Pesquisas, MMA, 22460-030, Rio de Janeiro, BrasilLaboratório de Tecido Conjuntivo, HUCFF, IBqM, 21941-590, UFRJ, Rio de Janeiro, BrasilDepartamento de Biologia Marinha, Instituto de Biologia, 24001-970, Universidade Federal Fluminense, Niterói, BrasilLaboratório de Biomineralização, ICB, 21941-590, UFRJ, Rio de Janeiro, BrasilInstituto de Pesquisas Jardim Botânico do Rio de Janeiro, Diretoria de Pesquisas, MMA, 22460-030, Rio de Janeiro, Brasil
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Cosse A, Potin P, Leblanc C. Patterns of gene expression induced by oligoguluronates reveal conserved and environment-specific molecular defense responses in the brown alga Laminaria digitata. THE NEW PHYTOLOGIST 2009; 182:239-250. [PMID: 19192194 DOI: 10.1111/j.1469-8137.2008.02745.x] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
* Until now, no information has been available on the transcriptional response to the transduction of defense signals in brown seaweeds that leads to active resistance against pathogens or grazers. * Using a polymerase chain reaction (PCR)-based, subtractive cDNA approach combined with filter arrays we demonstrated that Laminaria digitata exhibits a rapid response to oligoguluronate elicitors. The transcription levels of several genes were validated by quantitative real-time reverse-transcription PCR and further analysed using pharmacological approaches. * Fifty upregulated genes were identified by differential screening in elicited algae over a 24-h time-course. These genes were related to oxidative stress responses, production of antimicrobial secondary compounds or cell wall strengthening. Moreover, pharmacological tests showed that intracellular signal transduction is likely to involve reactive oxygen species. A new oligoguluronate-inducible vanadium-dependent haloperoxidase (vHPO), specific to iodide was also characterized. The transcription of several vHPO genes was shown to be tightly regulated. * Taken together, our data show that early transcriptional defense responses in L. digitata are similar to those in land plants but also include novel defense responses that involve tightly regulated iodine metabolism.
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Affiliation(s)
- Audrey Cosse
- Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie et Curie (UPMC)-Paris 6, UMR 7139 Végétaux marins et Biomolécules, Station Biologique, BP 74, F-29682, Roscoff, France
| | - Philippe Potin
- Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie et Curie (UPMC)-Paris 6, UMR 7139 Végétaux marins et Biomolécules, Station Biologique, BP 74, F-29682, Roscoff, France
| | - Catherine Leblanc
- Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie et Curie (UPMC)-Paris 6, UMR 7139 Végétaux marins et Biomolécules, Station Biologique, BP 74, F-29682, Roscoff, France
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Küpper FC, Carpenter LJ, McFiggans GB, Palmer CJ, Waite TJ, Boneberg EM, Woitsch S, Weiller M, Abela R, Grolimund D, Potin P, Butler A, Luther GW, Kroneck PMH, Meyer-Klaucke W, Feiters MC. Iodide accumulation provides kelp with an inorganic antioxidant impacting atmospheric chemistry. Proc Natl Acad Sci U S A 2008; 105:6954-8. [PMID: 18458346 PMCID: PMC2383960 DOI: 10.1073/pnas.0709959105] [Citation(s) in RCA: 152] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2007] [Indexed: 11/18/2022] Open
Abstract
Brown algae of the Laminariales (kelps) are the strongest accumulators of iodine among living organisms. They represent a major pump in the global biogeochemical cycle of iodine and, in particular, the major source of iodocarbons in the coastal atmosphere. Nevertheless, the chemical state and biological significance of accumulated iodine have remained unknown to this date. Using x-ray absorption spectroscopy, we show that the accumulated form is iodide, which readily scavenges a variety of reactive oxygen species (ROS). We propose here that its biological role is that of an inorganic antioxidant, the first to be described in a living system. Upon oxidative stress, iodide is effluxed. On the thallus surface and in the apoplast, iodide detoxifies both aqueous oxidants and ozone, the latter resulting in the release of high levels of molecular iodine and the consequent formation of hygroscopic iodine oxides leading to particles, which are precursors to cloud condensation nuclei. In a complementary set of experiments using a heterologous system, iodide was found to effectively scavenge ROS in human blood cells.
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Affiliation(s)
- Frithjof C Küpper
- Scottish Association for Marine Science, Dunstaffnage Marine Laboratory, Oban, Argyll PA37 1QA, Scotland, United Kingdom.
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44
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Verhaeghe EF, Fraysse A, Guerquin-Kern JL, Wu TD, Devès G, Mioskowski C, Leblanc C, Ortega R, Ambroise Y, Potin P. Microchemical imaging of iodine distribution in the brown alga Laminaria digitata suggests a new mechanism for its accumulation. J Biol Inorg Chem 2008; 13:257-69. [PMID: 18008093 DOI: 10.1007/s00775-007-0319-6] [Citation(s) in RCA: 60] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2007] [Accepted: 11/01/2007] [Indexed: 10/22/2022]
Abstract
Brown algal kelp species are the most efficient iodine accumulators among all living systems, with an average content of 1.0% of dry weight in Laminaria digitata. The iodine distributions in stipe and blade sections from L. digitata were investigated at tissue and subcellular levels. The quantitative tissue mapping of iodine and other trace elements (Cl, K, Ca, Fe, Zn, As and Br) was provided by the proton microprobe with spatial resolutions down to 2 mum. Chemical imaging at a subcellular resolution (below 100 nm) was performed using the secondary ion mass spectrometry microprobe. Sets of samples were prepared by both chemical fixation and cryofixation procedures. The latter prevented the diffusion and the leaching of labile inorganic iodine species, which were estimated at around 95% of the total content by neutron activation analysis. The distribution of iodine clearly shows a huge, decreasing gradient from the meristoderm to the medulla. The contents of iodine reach very high levels in the more external cell layers, up to 191 +/- 5 mg g(-1) of dry weight in stipe sections. The peripheral tissue is consequently the main storage compartment of iodine. At the subcellular level, iodine is mainly stored in the apoplasm and not in an intracellular compartment as previously proposed. This unexpected distribution may provide an abundant and accessible source of labile iodine species which can be easily remobilized for potential chemical defense and antioxidative activities. According to these imaging data, we proposed new hypotheses for the mechanism of iodine storage in L. digitata tissues.
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Affiliation(s)
- Elodie Françoise Verhaeghe
- Service de Chimie Bioorganique et de Marquage, CEA Saclay, Bât. 547, 91191, Gif-sur-Yvette Cedex, France.
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45
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Yang X, Tu L, Zhu L, Fu L, Min L, Zhang X. Expression profile analysis of genes involved in cell wall regeneration during protoplast culture in cotton by suppression subtractive hybridization and macroarray. JOURNAL OF EXPERIMENTAL BOTANY 2008; 59:3661-74. [PMID: 18775953 PMCID: PMC2561149 DOI: 10.1093/jxb/ern214] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2008] [Revised: 07/27/2008] [Accepted: 07/30/2008] [Indexed: 05/18/2023]
Abstract
The molecular mechanisms underlying cell wall biosynthesis are poorly understood. In this study, microscopic analysis showed that protoplasts generated a new cell wall within 48 h after transfer to a wall-regeneration medium. To identify genes related to cell wall biosynthesis in cotton, suppression subtractive hybridization was used to visualize differential gene expression at seven time points within the first 48 h. In total, 412 differentially expressed sequence tags (ESTs; >3-fold) were identified, and 210 unigenes were sequenced successfully. As confirmed by reverse-transcription PCR (RT-PCR) and real-time quantitative reverse-transcription PCR (QRT-PCR) analysis, the selected genes displayed complex expression patterns during cell wall regeneration from protoplasts and included most previously published cell-wall-associated genes. ESTs similar to cell-wall-protein genes, such as proline-rich protein (PRPL), glycine-rich protein (GRP), extension (EPR1), fasciclin-like arabinogalactan protein (FLA2), and expensing-like protein (EXLA and EXLB), which might participate in primary cell wall or secondary cell wall construction and modification, were up-regulated during cell wall regeneration from protoplasts. Sucrose synthase, an important enzyme in the sugar signalling pathway, played important roles in cellulose biosynthesis. Our findings also highlighted the function of some transcription factors during cell wall regeneration from protoplasts, including the squamosa promoter binding protein-like 14 (SPL14), NAC, Gbiaa-re, MYB, WRKY, swellmap 1 (SMP1), RAD5, and zinc finger family protein, as well as the enrichment of Ca(2+)-calmodulin signal molecules. On the basis of the gene expression profiles, a model of cell wall regeneration from protoplasts derived from cotton suspension cultures is proposed.
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Bitton R, Berglin M, Elwing H, Colin C, Delage L, Potin P, Bianco-Peled H. The influence of halide-mediated oxidation on algae-born adhesives. Macromol Biosci 2007; 7:1280-9. [PMID: 17724788 DOI: 10.1002/mabi.200700099] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
Adhesive materials extracted from the brown algae Fucus Serratus were studied. These adhesives are composed of cross-linked alginate and polyphenols oxidized in the presence of KI or KBr. All formulations were capable of adhering to a variety of surfaces, however the adhesion properties were influenced by the halide used. SAXS and TEM experiments revealed that oxidized polyphenols self-assemble into chain-like objects, irrespective of the oxidation conditions. Yet, slight differences in the aggregate size were detected. QCM-D results showed that the kinetics of the oxidation was faster with iodide than with bromide. Moreover, oxidation with iodide generates stiffer networks, suggesting that the interaction between the alginate and the polyphenol could be the cause of the reduced adhesion.
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Affiliation(s)
- Ronit Bitton
- Inter-Departmental program for Biotechnology, Technion-Israel Institute of Technology, Israel
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47
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Leblanc C, Colin C, Cosse A, Delage L, La Barre S, Morin P, Fiévet B, Voiseux C, Ambroise Y, Verhaeghe E, Amouroux D, Donard O, Tessier E, Potin P. Iodine transfers in the coastal marine environment: the key role of brown algae and of their vanadium-dependent haloperoxidases. Biochimie 2006; 88:1773-85. [PMID: 17007992 DOI: 10.1016/j.biochi.2006.09.001] [Citation(s) in RCA: 125] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2006] [Accepted: 09/01/2006] [Indexed: 11/22/2022]
Abstract
Brown algal kelp species are the most efficient iodine accumulators among all living systems, with an average content of 1.0% of dry weight in Laminaria digitata, representing a ca. 30,000-fold accumulation of this element from seawater. Like other marine macroalgae, kelps are known to emit volatile short-lived organo-iodines, and molecular iodine which are believed to be a main vector of the iodine biogeochemical cycle as well as having a significant impact on atmospheric chemistry. Therefore, radioactive iodine can potentially accumulate in seaweeds and can participate in the biogeochemical cycling of iodine, thereby impacting human health. From a radioecological viewpoint, iodine-129 (129I, half-life of 1.6 x 10(7) years) is one of the most persistent radionuclide released from nuclear facilities into the environment. In this context, the speciation of iodine by seaweeds is of special importance and there is a need to further understand the mechanisms of iodine uptake and emission by kelps. Recent results on the physiological role and biochemistry of the vanadium haloperoxidases of brown algae emphasize the importance of these enzymes in the control of these processes.
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Affiliation(s)
- Catherine Leblanc
- Centre national de la recherche scientifique, université Pierre et Marie Curie-Paris-VI, laboratoire international Associé-Dispersal and Adaptation in Marine Species, unité mixte de recherche 7139, 29682 Roscoff cedex, France.
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48
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Affiliation(s)
- Bradley S Moore
- Scripps Institution of Oceanography and Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA 92093, USA
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49
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Martinelango PK, Tian K, Dasgupta PK. Perchlorate in seawater. Anal Chim Acta 2006; 567:100-7. [PMID: 17723385 DOI: 10.1016/j.aca.2006.02.015] [Citation(s) in RCA: 63] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2005] [Revised: 02/01/2006] [Accepted: 02/07/2006] [Indexed: 12/01/2022]
Abstract
There has been no reliable published data on the presence of perchlorate in seawater. Seaweeds are among the most important plant life in the ocean and are good sources of iodine and have been widely used as food and nutritional supplement. Perchlorate is known to inhibit the transport of iodide by the sodium iodide symporter (NIS), present e.g., in the thyroid and mammary glands. With perchlorate being increasingly detected in drinking water, milk and various other foods, increasing the iodide intake through inexpensive natural supplements may be an attractive solution for maintaining iodine assimilation. We report here measurable concentrations of perchlorate in several samples of seawater (detectable in about half the samples analyzed). We also report the iodide and perchlorate concentrations of 11 different species of seaweed and the corresponding bioconcentration factors (BCF) for perchlorate and iodide, relative to the seawater from which they were harvested. All seaweed samples came from the same region, off the coast of Northeastern Maine. Concentrations of iodide and perchlorate in four seawater samples collected from the region near harvest time were 30+/-11 and 0.16+/-0.084 microg l(-1), respectively. Concentrations of both iodide and perchlorate varied over a wide range for different seaweed species; iodide ranging from 16 to 3134 mg kg(-1) and perchlorate from 0.077 to 3.2 mg kg(-1). The Laminaria species had the highest iodide concentration; Laminaria digitata is the seaweed species most commonly used in the kelp tablets sold in health food stores. Our sample of L. digitata contained 3134+/-15 mg iodide/kg dry weight. The BCF varied widely for different species, with Laminaria species concentrating iodide preferentially over perchlorate. The iodide BCF (BCF(i)) to perchlorate BCF (BCF(p)) quotient ranged from 0.66 to 53; L. digitata and L. saccarina having a BCF(i)/BCF(p) value of 45 and 53, respectively, far greater than a simple anion exchange process will allow. Although most seaweed samples contain some amount of perchlorate, the great majority contains iodide in so much higher amount that at least for the commonly used Laminaria species, the iodide/perchlorate ratio is greater than the square of the perchlorate to iodide selectivity factor reported for the mammalian NIS and should thus lead to net beneficial iodine nutrition even in a two-stage mother-infant scenario.
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Affiliation(s)
- P Kalyani Martinelango
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, TX 79409-1061, USA
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50
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Yun AJ, Doux JD, Lee PY. Contrast nephropathy may be partly mediated by autonomic dysfunction: renal failure considered as a modern maladaptation of the prehistoric trauma response. Med Hypotheses 2005; 66:776-83. [PMID: 16330157 DOI: 10.1016/j.mehy.2005.10.019] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2005] [Accepted: 10/21/2005] [Indexed: 11/19/2022]
Abstract
The mechanism behind iodinated radiocontrast nephropathy remains elusive. Direct oxidative damage is the prevailing hypothesis, but the apparent protective effect of iodine against oxidation contradicts this view. We propose that autonomic dysfunction participates in the pathogenesis of radiocontrast nephropathy and may account for other contrast-associated reactions previously attributed to allergy. Iodine, through its effects on thyroid function and chemoreceptor response to metabolic acidosis, may induce hyperadrenergia and consequently diminish renovascular flow and urine output. The renal response to adrenergia likely served an adaptive function during prehistoric evolution when trauma was a dominant source of hypovolemia and adrenergia, but the response may behave maladaptively today as evolutionarily nai ve triggers for adrenergia have emerged. Autonomic dysfunction can further impair renal function by deranging renovascular autoregulation and inducing oxidative reperfusion injury as a secondary phenomenon. Many other causes of acute renal failure such as drug toxicity, surgery, hospitalization, and diabetes may operate through hyperadrenergia, impaired renovascular autoregulation, and oxidative reperfusion injury. Dialysis, a volume reduction therapy for renal failure, can counterintuitively worsen renal dysfunction by exacerbating adrenergia, which may explain its association with accelerated atherosclerosis, inflammation, and cancer. Other examples of vicious cycles that perpetuate renal dysfunction may include renal artery stenosis, carotid stenosis, and atherosclerosis as well as the cardio-renal, hepato-renal, and pulmonary-renal syndromes. The benefits of hydration and bicarbonate in protecting renal function may operate in part through baroreceptor- and chemoreceptor-mediated reduction of sympathovagal ratio, respectively. New treatment paradigms for renal failure including pharmacologic and electro-mechanical therapies are envisioned based on autonomic remodeling, reduced sympathovagal ratio, and neuromodulation of pathways typically associated with trauma such as renin, angiotensin, vasopressin, and aldosterone.
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Affiliation(s)
- Anthony J Yun
- Department of Radiology, Stanford University, 470 University Avenue, Palo Alto, CA 94301, USA.
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