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Abdelhadi AA, Elarabi NI, Ibrahim SM, Abdel-Maksoud MA, Abdelhaleem HAR, Almutairi S, Malik A, Kiani BH, Henawy AR, Halema AA. Hybrid-genome sequence analysis of Enterobacter cloacae FACU and morphological characterization: insights into a highly arsenic-resistant strain. Funct Integr Genomics 2024; 24:174. [PMID: 39320439 DOI: 10.1007/s10142-024-01441-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2024] [Revised: 08/28/2024] [Accepted: 09/03/2024] [Indexed: 09/26/2024]
Abstract
Many organisms have adapted to survive in environments with high levels of arsenic (As), a naturally occurring metalloid with various oxidation states and a common element in human activities. These organisms employ diverse mechanisms to resist the harmful effects of arsenic compounds. Ten arsenic-resistant bacteria were isolated from contaminated wastewater in this study. The most efficient bacterial isolate able to resist 15,000 ppm Na2HAsO4·7H2O was identified using the 16S rRNA gene and whole genome analysis as Enterobacter cloacae FACU. The arsenic E. cloacae FACU biosorption capability was analyzed. To further unravel the genetic determinants of As stress resistance, the whole genome sequence of E. cloacae FACU was performed. The FACU complete genome sequence consists of one chromosome (5.7 Mb) and two plasmids, pENCL 1 and pENCL 2 (755,058 and 1155666 bp, respectively). 7152 CDSs were identified in the E. cloacae FACU genome. The genome consists of 130 genes for tRNA and 21 for rRNAs. The average G + C content was found to be 54%. Sequencing analysis annotated 58 genes related to resistance to many heavy metals, including 16 genes involved in arsenic efflux transporter and arsenic reduction (five arsRDABC genes) and 42 genes related to lead, zinc, mercury, nickel, silver, copper, cadmium and chromium in FACU. Scanning electron microscopy (SEM) confirmed the difference between the morphological responses of the As-treated FACU compared to the control strain. The study highlights the genes involved in the mechanism of As stress resistance, metabolic pathways, and potential activity of E. cloacae FACU at the genetic level.
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Affiliation(s)
- Abdelhadi A Abdelhadi
- Department of Genetics, Faculty of Agriculture, Cairo University, Giza, 12613, Egypt.
| | - Nagwa I Elarabi
- Department of Genetics, Faculty of Agriculture, Cairo University, Giza, 12613, Egypt.
| | - Saifeldeen M Ibrahim
- Biotechnology Department, Faculty of Agriculture, Al-Azhar University, Cairo, Egypt
- Bioinformatics Department, Agricultural Genetic Engineering Research Institute, ARC, Giza, Egypt
| | - Mostafa A Abdel-Maksoud
- Botany and Microbiology Department, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Heba A R Abdelhaleem
- College of Biotechnology, Misr University for Science and Technology (MUST), 6th October City, Egypt
| | - Saeedah Almutairi
- Botany and Microbiology Department, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Abdul Malik
- Department of Pharmaceutics, College of Pharmacy, King Saud University, Riyadh, Saudi Arabia
| | - Bushra Hafeez Kiani
- Department of Biology and Biotechnology, Worcester Polytechnic Institute, Worcester, Massachuesetts, 01609, USA
| | - Ahmed R Henawy
- Department of Microbiology, Faculty of Agriculture, Cairo University, Giza, 12613, Egypt
| | - Asmaa A Halema
- Department of Genetics, Faculty of Agriculture, Cairo University, Giza, 12613, Egypt
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Naiel MAE, Taher ES, Rashed F, Ghazanfar S, Shehata AM, Mohammed NA, Pascalau R, Smuleac L, Ibrahim AM, Abdeen A, Shukry M. The arsenic bioremediation using genetically engineered microbial strains on aquatic environments: An updated overview. Heliyon 2024; 10:e36314. [PMID: 39286167 PMCID: PMC11402758 DOI: 10.1016/j.heliyon.2024.e36314] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2024] [Revised: 08/01/2024] [Accepted: 08/13/2024] [Indexed: 09/19/2024] Open
Abstract
Heavy metal contamination threatens the aquatic environment and human health. Different physical and chemical procedures have been adopted in many regions; however, their adoption is usually limited since they take longer time, are more expensive, and are ineffective in polluted areas with high heavy metal contents. Thus, biological remediation is considered a suitable applicable method for treating contaminates due to its aquatic-friendly features. Bacteria possess an active metabolism that enables them to thrive and develop in highly contaminated water bodies with arsenic (As). They achieve this by utilizing their genetic structure to selectively target As and deactivate its toxic influences. Therefore, this review extensively inspects the bacterial reactions and interactions with As. In addition, this literature demonstrated the potential of certain genetically engineered bacterial strains to upregulate the expression and activity of specific genes associated with As detoxification. The As resistant mechanisms in bacteria exhibit significant variation depending on the genetics and type of the bacterium, which is strongly affected by the physical water criteria of their surrounding aquatic environment. Moreover, this literature has attempted to establish scientific connections between existing knowledge and suggested sustainable methods for removing As from aquatic bodies by utilizing genetically engineered bacterial strains. We shall outline the primary techniques employed by bacteria to bioremediate As from aquatic environments. Additionally, we will define the primary obstacles that face the wide application of genetically modified bacterial strains for As bioremediation in open water bodies. This review can serve as a target for future studies aiming to implement real-time bioremediation techniques. In addition, potential synergies between the bioremediation technology and other techniques are suggested, which can be employed for As bioremediation.
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Affiliation(s)
- Mohammed A E Naiel
- Animal Production Department, Faculty of Agriculture, Zagazig University, Zagazig, 44519, Egypt
| | - Ehab S Taher
- Department of Basic Medical and Dental Sciences, Faculty of Dentistry, Zarqa University, Zarqa, 13110, Jordan
| | - Fatema Rashed
- Department of Basic Medical and Dental Sciences, Faculty of Dentistry, Zarqa University, Zarqa, 13110, Jordan
| | - Shakira Ghazanfar
- National Institute for Genomics Advanced Biotechnology, National Agricultural Research Centre, Park Road, Islamabad, 45500, Pakistan
| | - Abdelrazeq M Shehata
- Department of Animal Production, Faculty of Agriculture, Al-Azhar University, Cairo, Egypt
| | - Nourelhuda A Mohammed
- Department of Physiology and Biochemistry, Faculty of Medicine, Mutah University, Mutah, 61710, Al-Karak, Jordan
| | - Raul Pascalau
- Department of Agricultural Technologies, Faculty of Agriculture, University of Life Sciences "King Mihai I" from Timisoara, Romania
| | - Laura Smuleac
- Department of Sustainable Development and Environmental Engineering Faculty of Agriculture, University of Life Sciences "King Mihai I" from Timisoara, Timisoara, Roman, Romania
| | - Ateya Megahed Ibrahim
- Department of Administration and Nursing Education, College of Nursing, Prince Sattam bin Abdulaziz University, Al-Kharj, 11942, Saudi Arabia
- Department of Family and Community Health Nursing, Faculty of Nursing, Port-Said University, Egypt
| | - Ahmed Abdeen
- Department of Forensic Medicine and Toxicology, Faculty of Veterinary Medicine, Benha University, Toukh, 13736, Egypt
- Department of Biochemistry, Faculty of Veterinary Medicine, South Valley University, Qena, 83523, Egypt
| | - Mustafa Shukry
- Department of Physiology, Faculty of Veterinary Medicine, Kafrelsheikh University, Kafrelsheikh, 33516, Egypt
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Jha A, Barsola B, Pathania D, Sonu, Raizada P, Thakur P, Singh P, Rustagi S, Khosla A, Chaudhary V. Nano-biogenic heavy metals adsorptive remediation for enhanced soil health and sustainable agricultural production. ENVIRONMENTAL RESEARCH 2024; 252:118926. [PMID: 38657848 DOI: 10.1016/j.envres.2024.118926] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2023] [Revised: 04/04/2024] [Accepted: 04/11/2024] [Indexed: 04/26/2024]
Abstract
Hazardous heavy metal (HM) pollution constitutes a pervasive global challenge, posing substantial risks to ecosystems and human health. The exigency for expeditious detection, meticulous monitoring, and efficacious remediation of HM within ecosystems is indisputable. Soil contamination, stemming from a myriad of anthropogenic activities, emerges as a principal conduit for HM ingress into the food chain. Traditional soil remediation modalities for HM elimination, while effective are labor-intensive, susceptible to secondary contamination, and exhibit limited efficacy in regions characterized by low metal toxicity. In response to these exigencies, the eco-friendly paradigm of bioremediation has garnered prominence as a financially judicious and sustainable remedial strategy. This approach entails the utilization of hyperaccumulators, Genetically Modified Microorganisms (GMM), and advantageous microbes. The current review offers a comprehensive elucidation of cutting-edge phyto/microbe-based bioremediation techniques, with a specific emphasis on their amalgamation with nanotechnology. Accentuating their pivotal role in advancing sustainable agricultural practices, the review meticulously dissects the synergistic interplay between plants and microbes, underscoring their adeptness in HM remediation sans secondary contamination. Moreover, the review scrutinizes the challenges intrinsic to implementing bioremediation-nanotechnology interface techniques and propounds innovative resolutions. These discernments proffer auspicious trajectories for the future of agriculture. Through the environmentally conscientious marvels of phyto/microbe bioremediation, an optimistic outlook emerges for environmental preservation and the cultivation of a sustainable, salubrious planet via the conduit of cleaner agricultural production.
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Affiliation(s)
- Ayush Jha
- University Institute of Biotechnology, Chandigarh University, Gharuan, Punjab, 140413, India
| | - Bindiya Barsola
- School of Biological and Environmental Sciences, Shoolini University of Biotechnology and Management Sciences, Solan, 173229, India
| | - Diksha Pathania
- Department of Biosciences and Technology, MMEC, Maharishi Markandeshwar University, Mullana (Ambala), Haryana,133203, India
| | - Sonu
- School of Advanced Chemical Sciences, Shoolini University, Solan, Himachal Pradesh, 173229, India.
| | - Pankaj Raizada
- School of Advanced Chemical Sciences, Shoolini University, Solan, Himachal Pradesh, 173229, India
| | - Pankaj Thakur
- Special Centre for Nanoscience, Jawaharlal Nehru University, New Delhi, 110067, India
| | - Pardeep Singh
- School of Advanced Chemical Sciences, Shoolini University, Solan, Himachal Pradesh, 173229, India
| | - Sarvesh Rustagi
- School of Applied and Life Sciences, Uttaranchal University, Dehradun, Uttarakhand, India
| | - Ajit Khosla
- Department of Applied Chemistry, School of Advanced Materials and Nanotechnology, Xidian University, Xi'an, 710126, PR China.
| | - Vishal Chaudhary
- Physics Department, Bhagini Nivedita College, University of Delhi, Delhi, India; Centre for Research Impact & Outcome, Chitkara University, Punjab, 140401, India.
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Satyapal GK, Haque R, Kumar N. Gamma irradiation in modulating arsenic bioremediation potential of Pseudomonas sp. AK1 and AK9. Int J Radiat Biol 2024; 100:934-939. [PMID: 38657135 DOI: 10.1080/09553002.2024.2345137] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2023] [Accepted: 04/11/2024] [Indexed: 04/26/2024]
Abstract
PURPOSE Present study deals with the role of gamma irradiation in modulating arsenic bioremediation of Pseudomonas sp. AK1 and AK9 strains. MATERIALS AND METHODS The bacterial strains AK1 and AK9 of Pseudomonas sp. were irradiated at different doses (5 Gy, 10 Gy, 15 Gy and 20 Gy) of gamma irradiation. The effect of γ-irradiation on the growth and arsenic modulating ability of AK1 and AK9 strains was determined in the presence and absence of arsenic along with non-irradiated strains. Further, a comparative study of non-irradiated and irradiated strains by protein profiling in absence and presence of arsenic was carried out to confirm of the increased expression ofarsenite oxidase. RESULTS Both strains were able to transform AsIII to AsV. Both strains AK1 and AK9 decrease the arsenic concentration by 626.68 ppb (13.36%) and 686.40 ppb (14.71%) after an incubation period of 96 h in presence of arsenic. Gamma irradiated AK9 strains showed doubled growth in presence of arsenic as compared to non-irradiated strains at 10 Gy treatment whereas no changes in growth was observed in irradiated AK1 strains. Gamma irradiated AK9 strain decrease 378.65 ppb (7.27%) more arsenic concentration from natural water sample supplemented with AsIII than non-irradiated AK9 strain. Further, in the protein profile, increased expression of arsenite oxidase (∼85 kDa) was observed in irradiated AK9 strains in presence of arsenic. CONCLUSIONS Overall, the results suggested that the gamma irradiated AK9 strain having potential for arsenic accumulation and increased arsenite tolerance may play a great role in the bioremediation of the arsenite at arsenic contaminated sites.
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Affiliation(s)
| | - Rizwanul Haque
- Department of Biotechnology, Central University of South Bihar, Gaya, India
| | - Nitish Kumar
- Department of Biotechnology, Central University of South Bihar, Gaya, India
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Hoang ATP, Kim KW. Mitigation of arsenic accumulation in crop plants using biofertilizer. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:26231-26241. [PMID: 38494569 DOI: 10.1007/s11356-024-32825-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2023] [Accepted: 03/04/2024] [Indexed: 03/19/2024]
Abstract
Elevated levels of arsenic in crop plants have been found in various regions worldwide, especially where agricultural soils have been affected by arsenic-enriched aquifers and human activities including mining, smelting, and pesticide application. Given the highly toxic nature of arsenic, remediation should be carried out immediately to reduce this potentially toxic element transport from soil to crop plants. This study focused on the utilization of biofertilizer which is a combination of arsenic-accumulating microorganisms and adsorbent (carrier) in order to achieve high efficiency of arsenic immobilization and ability to apply in the field. Thirty-two bacterial strains were isolated from 9 soil samples collected from the Dongjin and Duckum mining areas in Korea using a nutrient medium amended with 2 mM sodium arsenite. Among isolates, strain DE12 identified as Bacillus megaterium exhibited the greatest arsenic accumulation capacity (0.236 mg/g dry biomass) and ability to resist up to 18 mM arsenite. Among the three agricultural waste adsorbents studied, rice straw was proved to have a higher adsorption capacity (0.104 mg/g) than rice husk and corn husk. Therefore, rice straw was chosen to be the carrier to form biofertilizer together with strain DE12. Inoculation of biofertilizer in soil showed a reduction of arsenic content in the edible part of lettuce, water spinach, and sweet basil by 17.5%, 34.1%, and 34,1%, respectively compared to the control group. The use of biofertilizer may open up the potential application in the field for other food plants.
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Affiliation(s)
- Anh T P Hoang
- School of Earth Sciences and Environmental Engineering, Gwangju Institute of Science and Technology (GIST), Gwangju, 61005, Republic of Korea
| | - Kyoung-Woong Kim
- School of Earth Sciences and Environmental Engineering, Gwangju Institute of Science and Technology (GIST), Gwangju, 61005, Republic of Korea.
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Hassan Z, Westerhoff HV. Arsenic Contamination of Groundwater Is Determined by Complex Interactions between Various Chemical and Biological Processes. TOXICS 2024; 12:89. [PMID: 38276724 PMCID: PMC11154318 DOI: 10.3390/toxics12010089] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/23/2023] [Revised: 01/03/2024] [Accepted: 01/05/2024] [Indexed: 01/27/2024]
Abstract
At a great many locations worldwide, the safety of drinking water is not assured due to pollution with arsenic. Arsenic toxicity is a matter of both systems chemistry and systems biology: it is determined by complex and intertwined networks of chemical reactions in the inanimate environment, in microbes in that environment, and in the human body. We here review what is known about these networks and their interconnections. We then discuss how consideration of the systems aspects of arsenic levels in groundwater may open up new avenues towards the realization of safer drinking water. Along such avenues, both geochemical and microbiological conditions can optimize groundwater microbial ecology vis-à-vis reduced arsenic toxicity.
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Affiliation(s)
- Zahid Hassan
- Department of Molecular Cell Biology, A-Life, Faculty of Science, Vrije Universiteit Amsterdam, 1081 HV Amsterdam, The Netherlands;
- Department of Genetic Engineering and Biotechnology, Jagannath University, Dhaka 1100, Bangladesh
| | - Hans V. Westerhoff
- Department of Molecular Cell Biology, A-Life, Faculty of Science, Vrije Universiteit Amsterdam, 1081 HV Amsterdam, The Netherlands;
- School of Biological Sciences, Faculty of Biology, Medicine and Health, The University of Manchester, Manchester M13 9PT, UK
- Synthetic Systems Biology and Nuclear Organization, Swammerdam Institute for Life Sciences, University of Amsterdam, 1098 XH Amsterdam, The Netherlands
- Stellenbosch Institute of Advanced Studies (STIAS), Wallenberg Research Centre at Stellenbosch University, Stellenbosch 7600, South Africa
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Mujawar SY, Shamim K, Vaigankar DC, Naik MM, Dubey SK. Rapid arsenite oxidation by Paenarthrobacter nicotinovorans strain SSBW5: unravelling the role of GlpF, aioAB and aioE genes. Arch Microbiol 2023; 205:333. [PMID: 37712976 DOI: 10.1007/s00203-023-03673-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2023] [Revised: 08/20/2023] [Accepted: 08/30/2023] [Indexed: 09/16/2023]
Abstract
A novel arsenite resistant bacterial strain SSBW5 was isolated from the battery waste site of Corlim, Goa, India. This strain interestingly exhibited rapid arsenite oxidation with an accumulation of 5 mM arsenate within 24 h and a minimum inhibitory concentration (MIC) of 18 mM. The strain SSBW5 was identified as Paenarthrobacter nicotinovorans using 16S rDNA sequence analysis. Fourier-transformed infrared (FTIR) spectroscopy of arsenite-exposed cells revealed the interaction of arsenite with several important functional groups present on the cell surface, possibly involved in the resistance mechanism. Interestingly, the whole genome sequence analysis also clearly elucidated the presence of genes, such as GlpF, aioAB and aioE encoding transporter, arsenite oxidase and oxidoreductase enzyme, respectively, conferring their role in arsenite resistance. Furthermore, this strain also revealed the presence of several other genes conferring resistance to various metals, drugs, antibiotics and disinfectants. Further suggesting the probable direct or indirect involvement of these genes in the detoxification of arsenite thereby increasing its tolerance limit. In addition, clumping of bacterial cells was observed through microscopic analysis which could also be a strategy to reduce arsenite toxicity thus indicating the existence of multiple resistance mechanisms in strain SSBW5. In the present communication, we are reporting for the first time the potential of P. nicotinovorans strain SSBW5 to be used in the bioremediation of arsenite via arsenite oxidation along with other toxic metals and metalloids.
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Affiliation(s)
- Sajiya Yusuf Mujawar
- Laboratory of Bacterial Genetics and Environmental Biotechnology, Department of Microbiology, Goa University, Taleigao Plateau, Goa, 403206, India
| | - Kashif Shamim
- Laboratory of Bacterial Genetics and Environmental Biotechnology, Department of Microbiology, Goa University, Taleigao Plateau, Goa, 403206, India
- National Centre for Natural Product Research, University of Mississippi, Oxford, MS, USA
| | - Diviya Chandrakant Vaigankar
- Laboratory of Bacterial Genetics and Environmental Biotechnology, Department of Microbiology, Goa University, Taleigao Plateau, Goa, 403206, India
- Marine Microbiology, School of Earth, Ocean and Atmospheric Sciences, Goa University, Taleigao Plateau, Goa, 403206, India
| | - Milind Mohan Naik
- Laboratory of Bacterial Genetics and Environmental Biotechnology, Department of Microbiology, Goa University, Taleigao Plateau, Goa, 403206, India
| | - Santosh Kumar Dubey
- Laboratory of Bacterial Genetics and Environmental Biotechnology, Department of Microbiology, Goa University, Taleigao Plateau, Goa, 403206, India.
- Center of Advanced Study in Botany, Banaras Hindu University, Varanasi, U.P., 221005, India.
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8
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Mohsin H, Shafique M, Zaid M, Rehman Y. Microbial biochemical pathways of arsenic biotransformation and their application for bioremediation. Folia Microbiol (Praha) 2023:10.1007/s12223-023-01068-6. [PMID: 37326815 DOI: 10.1007/s12223-023-01068-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2022] [Accepted: 05/19/2023] [Indexed: 06/17/2023]
Abstract
Arsenic is a ubiquitous toxic metalloid, the concentration of which is beyond WHO safe drinking water standards in many areas of the world, owing to many natural and anthropogenic activities. Long-term exposure to arsenic proves lethal for plants, humans, animals, and even microbial communities in the environment. Various sustainable strategies have been developed to mitigate the harmful effects of arsenic which include several chemical and physical methods, however, bioremediation has proved to be an eco-friendly and inexpensive technique with promising results. Many microbes and plant species are known for arsenic biotransformation and detoxification. Arsenic bioremediation involves different pathways such as uptake, accumulation, reduction, oxidation, methylation, and demethylation. Each of these pathways has a certain set of genes and proteins to carry out the mechanism of arsenic biotransformation. Based on these mechanisms, various studies have been conducted for arsenic detoxification and removal. Genes specific for these pathways have also been cloned in several microorganisms to enhance arsenic bioremediation. This review discusses different biochemical pathways and the associated genes which play important roles in arsenic redox reactions, resistance, methylation/demethylation, and accumulation. Based on these mechanisms, new methods can be developed for effective arsenic bioremediation.
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Affiliation(s)
- Hareem Mohsin
- Department of Life Sciences, School of Science, University of Management and Technology, Lahore, Pakistan
| | - Maria Shafique
- Institute of Microbiology and Molecular Genetics, University of the Punjab, Quaid-e-Azam Campus, Lahore, Pakistan
| | - Muhammad Zaid
- Department of Life Sciences, School of Science, University of Management and Technology, Lahore, Pakistan
| | - Yasir Rehman
- Department of Life Sciences, School of Science, University of Management and Technology, Lahore, Pakistan.
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9
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Ramzan M, Naz G, Shah AA, Parveen M, Jamil M, Gill S, Sharif HMA. Synthesis of phytostabilized zinc oxide nanoparticles and their effects on physiological and anti-oxidative responses of Zea mays (L.) under chromium stress. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2023; 196:130-138. [PMID: 36706692 DOI: 10.1016/j.plaphy.2023.01.015] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2022] [Revised: 12/15/2022] [Accepted: 01/10/2023] [Indexed: 06/18/2023]
Abstract
Chromium (Cr) is a hazardous metal that has a significant risk of transfer from soil to edible parts of food crops, including shoot tissues. Reduction of Cr accumulation is required to lower the risk of Cr-exposed in humans and animals feeding on metal-contaminated parts of such plant. Zea mays is a global staple crop irrigated intensively with Cr-contaminated water. Consequently, the objective of this study was to investigate that FI-stabilized ZnO NPs could be used as an eco-friendly and efficient amendment to reduced Cr uptake and toxicity in Zea mays. To investigate the growth parameters, physiological, oxidative stress and biochemical parameters under different Cr-VI concentrations (10.0, 15.0, and 20.0 ppm). Cr exposed Z. mays plants exhibited substantially reduced plant biomass, chlorophyll contents, and altered antioxidant enzyme activity compared to untreated control. The results revealed that foliar application of Fagonia-ZnO-NPs helps eliminate the harmful effects of Cr (VI), which can enter plants through soil pollution. Increased levels of proline, soluble sugars and various antioxidant enzymes reflected this. Mean comparisons showed that Cr stress led to a 33-50% reduction in fresh shoot weight, 73-170% in fresh root weight, 16-34% shoot length, 9.5-129% root length, Chlorophyll contents 20-33% (Chl a), 18-27% (Chl b) and 17-27% (car), 14-33% total soluble sugars, 54-170% proline content, 7-7.5% POD, 0.66-75% CAT and 32-77% APX enzyme activities compared to untreated plants. Application of FI-stabilized ZnO NPs led to an increase 21-77% in fresh shoot weight, 22-45%, fresh root weight, 3-35% shoot length, 24-154% root length, Chlorophyll contents 39-60% (Chl a), 15-79% (Chl b) and 28-82% (car), 19-52% total soluble sugars, 21-55% proline content, 14-43% POD, 34-95% CAT and 130-186% APX enzyme activities under 10, 15 and 20 ppm Cr stress respectively, compared to Cr-treated plants. However, the principal component analysis revealed that chlorophyll contents, carotenoid, CAT, APX and length were in the same group and showed a positive correlation. These data collectively suggest that phytostabilized zinc oxide NPs may be an eco-friendly solution to mitigate Cr toxicity in agricultural soils and crop plants.
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Affiliation(s)
- Musarrat Ramzan
- Department of Botany, Faculty of Chemical and Biological Sciences, The Islamia University of Bahawalpur, Pakistan
| | - Gul Naz
- Institute of Physics, Faculty of Physical & Mathematical Sciences, The Islamia University of Bahawalpur, Pakistan
| | - Anis Ali Shah
- Department of Botany, Division of Science and Technology, University of Education, Lahore, Pakistan
| | - Misbah Parveen
- Department of Botany, Faculty of Chemical and Biological Sciences, The Islamia University of Bahawalpur, Pakistan
| | - Muhammad Jamil
- Department of Botany, Faculty of Chemical and Biological Sciences, The Islamia University of Bahawalpur, Pakistan
| | - Sidra Gill
- Department of Botany, Faculty of Chemical and Biological Sciences, The Islamia University of Bahawalpur, Pakistan
| | - Hafiz M Adeel Sharif
- Research Center for Eco-Environmental Engineering, Dongguan University of Technology, Dongguan, 523808, China.
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Mondal M, Kumar V, Bhatnagar A, Vithanage M, Selvasembian R, Ambade B, Meers E, Chaudhuri P, Biswas JK. Bioremediation of metal(loid) cocktail, struvite biosynthesis and plant growth promotion by a versatile bacterial strain Serratia sp. KUJM3: Exploiting environmental co-benefits. ENVIRONMENTAL RESEARCH 2022; 214:113937. [PMID: 35931193 DOI: 10.1016/j.envres.2022.113937] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/27/2022] [Revised: 07/16/2022] [Accepted: 07/18/2022] [Indexed: 06/15/2023]
Abstract
In this study the multiple metal(loid) (As, Cd, Cu and Ni) resistant bacterium Serratia sp. KUJM3 was able to grow in both single and multiple metal(loid) contaminated wastewater and removed them by 34.93-48.80% and 22.93-32%, respectively. It reduced As(v) to As(III) by 68.44-85.06% in a concentration dependent manner. The strain's IAA production potential increased significantly under both metal(loid)s regime. The lentil (Lens culinaris) seed germination and seed production were enhanced with the exogenous bacterial inoculation by 20.39 and 16.43%, respectively. Under both multi-metal(loid) regimes the bacterial inoculation promoted shoot length (22.65-51.34%), shoot dry weight (33.89-66.11%) and seed production (13.46-35%). Under bacterial manipulation the metal(loid)s immobilization increased with concomitant curtailment of translocation in lentil plant by 61.89-75.14% and 59.19-71.14% in shoot and seed, respectively. The strain biomineralized struvite (MgNH4 PO4 ·6H2O) from human urine @ 403 ± 6.24 mg L-1. The fertilizer potential of struvite was confirmed with the promotion of cowpea (Vigna unguiculata) growth traits e.g. leaf number (37.04%), pod number (234%), plant wet weight (65.47%) and seed number (134.52%). Thus Serratia sp. KUJM3 offers multiple benefits of metal(loid)s bioremediation, As(V) reduction, plant growth promotion, and struvite biomineralization garnering a suite of appealing environmental applications.
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Affiliation(s)
- Monojit Mondal
- Enviromicrobiology, Ecotoxicology and Ecotechnology Research Laboratory (3E-MicroToxTech Lab), Department of Ecological Studies, University of Kalyani, Kalyani, Nadia, 741235, West Bengal, India
| | - Vineet Kumar
- Department of Basic and Applied Sciences, School of Engineering and Sciences, G D Goenka University, Sohna Road, Gurugram, Haryana, 122103, India
| | - Amit Bhatnagar
- Department of Separation Science, LUT School of Engineering Science, LUT University, Sammonkatu 12, FI-50130, Mikkeli, Finland
| | - Meththika Vithanage
- Ecosphere Resilience Research Centre, Faculty of Applied Sciences, University of Sri Jayewardenepura, Sri Lanka
| | - Rangabhashiyam Selvasembian
- Department of Biotechnology, School of Chemical and Biotechnology, SASTRA Deemed University, Thanjavur, 613401, Tamil Nadu, India
| | - Balram Ambade
- Department of Chemistry, National Institute of Technology, Jamshedpur, 831014, Jharkhand, India
| | - Erik Meers
- Department of Green Chemistry and Technology, Ghent University, Coupure Links 653, 9000, Ghent, Belgium
| | - Punarbasu Chaudhuri
- Department of Environmental Science, University of Calcutta, 35 Ballygunge Circular Road, Calcutta, 700019, India
| | - Jayanta Kumar Biswas
- Enviromicrobiology, Ecotoxicology and Ecotechnology Research Laboratory (3E-MicroToxTech Lab), Department of Ecological Studies, University of Kalyani, Kalyani, Nadia, 741235, West Bengal, India; International Centre for Ecological Engineering, University of Kalyani, Kalyani, 741235, West Bengal, India.
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11
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Bhati R, Sreedharan SM, Rizvi A, Khan MS, Singh R. An Insight into Efflux-Mediated Arsenic Resistance and Biotransformation Potential of Enterobacter Cloacae RSC3 from Arsenic Polluted Area. Indian J Microbiol 2022; 62:456-467. [PMID: 35974925 PMCID: PMC9375818 DOI: 10.1007/s12088-022-01028-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2022] [Accepted: 05/20/2022] [Indexed: 11/05/2022] Open
Abstract
Indiscriminate discharge of heavy metals/metalloids from different sources into the sustainable agro-ecosystem is a major global concern for food security and human health. Arsenic (As), categorized as group one human carcinogen is a quintessential toxic metalloid that alters the microbial compositions and functions, induce physiological and metabolic changes in plants and contaminate surface/ground water. The management of arsenic toxicity, therefore, becomes imminent. Acknowledging the arsenic threat, the study was aimed at identifying arsenic resistant bacteria and evaluating its arsenic removal/detoxification potential. Of the total 118 bacterial isolates recovered from arsenic rich environment, the bacterial strain RSC3 demonstrating highest As tolerance was identified as Enterobacter cloacae by 16S rRNA gene sequence analysis. Enterobacter cloacae tolerated high concentration (6000 ppm) of As and exhibited 0.55 h-1 of specific growth rate as calculated from growth kinetics data. Strain RSC3 also displayed varying level of resistance to other heavy metals and many antibacterial drugs in plate bioassay. The bacterial strain RSC3 possessed gene (arsC) which causes transformation of arsenate to arsenite. The arsenate uptake and efflux of the bacterial cells was revealed by high throughput techniques such as AAS, SEM/TEM and EDX. The simultaneous As reducing ability, and multi metal/multi-antibiotics resistance potentials of E. cloacae provides a promising option in the microbes based remediation of As contaminated environments.
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Affiliation(s)
- Reeta Bhati
- Amity Institute of Microbial Technology, Amity University Uttar Pradesh, Sector-125, Noida, Uttar Pradesh 201313 India
| | - Smitha Mony Sreedharan
- Amity Institute of Microbial Technology, Amity University Uttar Pradesh, Sector-125, Noida, Uttar Pradesh 201313 India
| | - Asfa Rizvi
- Department of Botany, School of Chemical and Life Sciences, Jamia Hamdard, Hamdard Nagar, New Delhi, 110062 India
| | - Mohammad Saghir Khan
- Department of Agricultural Microbiology, Faculty of Agricultural Sciences, Aligarh Muslim University, Aligarh, Uttar Pradesh 202002 India
| | - Rajni Singh
- Amity Institute of Microbial Technology, Amity University Uttar Pradesh, Sector-125, Noida, Uttar Pradesh 201313 India
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12
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Cloning and functional characterization of arsenite oxidase (aoxB) gene associated with arsenic transformation in Pseudomonas sp. strain AK9. Gene X 2022; 850:146926. [DOI: 10.1016/j.gene.2022.146926] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2022] [Revised: 09/22/2022] [Accepted: 09/26/2022] [Indexed: 11/22/2022] Open
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13
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Magar LB, Rayamajhee B, Khadka S, Karki G, Thapa A, Yasir M, Thapa S, Panta OP, Sharma S, Poudel P. Detection of Bacillus Species with Arsenic Resistance and Plant Growth Promoting Efficacy from Agricultural Soils of Nepal. SCIENTIFICA 2022; 2022:9675041. [PMID: 35909656 PMCID: PMC9325649 DOI: 10.1155/2022/9675041] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/30/2022] [Revised: 05/22/2022] [Accepted: 06/01/2022] [Indexed: 06/15/2023]
Abstract
Arsenic contamination in soil and water is one of the major environmental problems in multiple countries including Nepal imposing a serious threat to the ecosystem and public health. Many soil bacteria can detoxify arsenic, including genus Bacillus. With an objective to gauge the plant growth-promoting activities of arsenic-resistant Bacillus species, 36 samples (soil, rice, cauliflower, and beans) were collected from the Terai region of Nepal. For selective isolation of Bacillus species, each sample was heated at 80°C for 15 min before the inoculation into nutrient agar (NA). Following the standard protocol, arsenic-resistant Bacillus species were screened using NA supplemented with 100 ppm sodium arsenate and sodium arsenite. Among 158 randomly selected isolates, only five isolates were able to tolerate sodium arsenite concentration up to 600 ppm. Notably, all five isolates were able to produce indole acetic acid (IAA), a plant hormone, and solubilize phosphate. Based on biochemical analysis and 16S rRNA gene sequencing, isolates N4-1, RW, KR7-12, Bhw1-4, and BW2-2 were identified as B. subtilis subsp. stercosis, B. flexus, B. licheniformis, B. cereus, and B. flexus, respectively. To the best of our knowledge, this is the first study showing the presence of arsenic-resistant B. flexus in Nepalese soil with plant growth-promoting traits. Possible utilization of these Bacillus strains could facilitate the novel bioremediation pathway to reduce the toxic effect of arsenic from the soil and water in the Terai region of Nepal.
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Affiliation(s)
- Lil Budha Magar
- Department of Microbiology, National College, Tribhuvan University, Kathmandu, Nepal
| | - Binod Rayamajhee
- School of Optometry and Vision Science, Faculty of Medicine and Health, UNSW, Sydney, Australia
- Department of Infection and Immunology, Kathmandu Research Institute for Biological Sciences (KRIBS), Lalitpur, Nepal
| | - Sujan Khadka
- Department of Microbiology, Birendra Multiple Campus, Tribhuvan University, Bharatpur, Chitwan, Nepal
| | - Gaurab Karki
- School of Optometry and Vision Science, Faculty of Medicine and Health, UNSW, Sydney, Australia
- Department of Biological Sciences, The University of Toledo, Toledo, Ohio, USA
| | - Alina Thapa
- Department of Microbiology, Balkumari College, Tribhuvan University, Bharatpur, Chitwan, Nepal
| | - Muhammad Yasir
- Department of Infection and Immunology, Kathmandu Research Institute for Biological Sciences (KRIBS), Lalitpur, Nepal
| | - Sandeep Thapa
- Kathmandu Center for Genomics and Research Laboratory (KCGRL), Lalitpur, Nepal
| | - Om Prakash Panta
- Department of Microbiology, National College, Tribhuvan University, Kathmandu, Nepal
| | - Suprina Sharma
- Central Department of Microbiology, Tribhuvan University, Kirtipur, Nepal
| | - Pramod Poudel
- Research Division, University Grants Commission (UGC), Bhaktapur, Nepal
- Central Department of Biotechnology, Tribhuvan University, Kirtipur, Nepal
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14
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Raklami A, Meddich A, Oufdou K, Baslam M. Plants-Microorganisms-Based Bioremediation for Heavy Metal Cleanup: Recent Developments, Phytoremediation Techniques, Regulation Mechanisms, and Molecular Responses. Int J Mol Sci 2022; 23:5031. [PMID: 35563429 PMCID: PMC9105715 DOI: 10.3390/ijms23095031] [Citation(s) in RCA: 27] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2022] [Revised: 04/25/2022] [Accepted: 04/28/2022] [Indexed: 02/01/2023] Open
Abstract
Rapid industrialization, mine tailings runoff, and agricultural activities are often detrimental to soil health and can distribute hazardous metal(loid)s into the soil environment, with harmful effects on human and ecosystem health. Plants and their associated microbes can be deployed to clean up and prevent environmental pollution. This green technology has emerged as one of the most attractive and acceptable practices for using natural processes to break down organic contaminants or accumulate and stabilize metal pollutants by acting as filters or traps. This review explores the interactions between plants, their associated microbiomes, and the environment, and discusses how they shape the assembly of plant-associated microbial communities and modulate metal(loid)s remediation. Here, we also overview microbe-heavy-metal(loid)s interactions and discuss microbial bioremediation and plants with advanced phytoremediation properties approaches that have been successfully used, as well as their associated biological processes. We conclude by providing insights into the underlying remediation strategies' mechanisms, key challenges, and future directions for the remediation of metal(loid)s-polluted agricultural soils with environmentally friendly techniques.
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Affiliation(s)
- Anas Raklami
- Laboratory of Microbial Biotechnologies, Agrosciences, and Environment, Labeled Research Unit-CNRST N°4, Faculty of Sciences Semlalia, Cadi Ayyad University, Marrakesh 40000, Morocco; (A.R.); (K.O.)
| | - Abdelilah Meddich
- Center of Agrobiotechnology and Bioengineering, Research Unit Labelled CNRST (Centre Agro-Biotech URL-CNRST-05), “Physiology of Abiotic Stresses” Team, Cadi Ayyad University, Marrakesh 40000, Morocco;
- Laboratory of Agro-Food, Biotechnologies and Valorization of Plant Bioresources (AGROBIOVAL), Faculty of Science Semlalia, Cadi Ayyad University, Marrakesh 40000, Morocco
| | - Khalid Oufdou
- Laboratory of Microbial Biotechnologies, Agrosciences, and Environment, Labeled Research Unit-CNRST N°4, Faculty of Sciences Semlalia, Cadi Ayyad University, Marrakesh 40000, Morocco; (A.R.); (K.O.)
| | - Marouane Baslam
- Laboratory of Biochemistry, Faculty of Agriculture, Niigata University, Niigata 950-2181, Japan
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15
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Current knowledge on molecular mechanisms of microorganism-mediated bioremediation for arsenic contamination: A review. Microbiol Res 2022; 258:126990. [DOI: 10.1016/j.micres.2022.126990] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2021] [Revised: 02/09/2022] [Accepted: 02/14/2022] [Indexed: 11/30/2022]
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16
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Mishra S, Kumar S, Verma SK. Arsenic Resistance Mechanisms in Pseudomonas mendocina SMSKVR-3 Strain Isolated from Khetri Copper Mines, Rajasthan, India. Curr Microbiol 2022; 79:69. [DOI: 10.1007/s00284-021-02749-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2020] [Accepted: 12/17/2021] [Indexed: 11/29/2022]
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17
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Bonomo MG, Calabrone L, Scrano L, Bufo SA, Di Tomaso K, Buongarzone E, Salzano G. Metagenomic monitoring of soil bacterial community after the construction of a crude oil flowline. ENVIRONMENTAL MONITORING AND ASSESSMENT 2022; 194:48. [PMID: 34978609 PMCID: PMC8724107 DOI: 10.1007/s10661-021-09637-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/06/2021] [Accepted: 11/20/2021] [Indexed: 06/12/2023]
Abstract
This study aimed to assess the metagenomic changes of soil bacterial community after constructing a crude oil flowline in Basilicata region, Italy. Soils identified a total of 56 taxa at the phylum level and 485 at the family level, with a different taxa distribution, especially in samples collected on 2014. Since microbiological diversity occurred in the soils collected after 2013 (the reference year), we performed a differential abundance analysis using DESeq2 by GAIA pipeline. In the forest area, 14 phyla and 126 families were differentially abundant (- 6.06 < logFC > 7.88) in 2014 compared to 2013. Nine families were differentially abundant in 2015, with logFC between - 3.16 and 4.66, while 20 families were significantly more abundant and 16 less abundant in 2016, with logFC between - 6.48 and 6.45. In the cultivated area, 33 phyla and 260 families showed differential abundance in 2014. In the next year (2015), 14 phyla were significantly more abundant and 19 less abundant, while 29 families were substantially more abundant and 139 less abundant, with fold changes ranging between - 5.67 and 4.01. In 2016, 33 phyla showed a significantly different abundance, as 14 were more abundant and 19 decreased, and 81 families showed a significantly increased amount with logFC between - 5.31 and 5.38. These results hypothesise that the analysed site is an altered soil where the development of particular bacterial groups attends to bioremediation processes, naturally occurring to restore optimal conditions.
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Affiliation(s)
| | - Luana Calabrone
- Department of Sciences, University of Basilicata, Potenza, Italy
| | - Laura Scrano
- Department of European Cultures, University of Basilicata, Potenza, Italy
| | - Sabino Aurelio Bufo
- Department of Sciences, University of Basilicata, Potenza, Italy
- Department of Geography, Environmental Management and Energy Studies, University of Johannesburg, Johannesburg, South Africa
| | - Katia Di Tomaso
- Department of Sciences, University of Basilicata, Potenza, Italy
| | | | - Giovanni Salzano
- Department of Sciences, University of Basilicata, Potenza, Italy
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18
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Diba F, Khan MZH, Uddin SZ, Istiaq A, Shuvo MSR, Ul Alam ASMR, Hossain MA, Sultana M. Bioaccumulation and detoxification of trivalent arsenic by Achromobacter xylosoxidans BHW-15 and electrochemical detection of its transformation efficiency. Sci Rep 2021; 11:21312. [PMID: 34716390 PMCID: PMC8556249 DOI: 10.1038/s41598-021-00745-1] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2021] [Accepted: 10/15/2021] [Indexed: 12/02/2022] Open
Abstract
Arsenotrophic bacteria play an essential role in lowering arsenic contamination by converting toxic arsenite [As (III)] to less toxic and less bio-accumulative arsenate [As (V)]. The current study focused on the qualitative and electrocatalytic detection of the arsenite oxidation potential of an arsenite-oxidizing bacteria A. xylosoxidans BHW-15 (retrieved from As-contaminated tube well water), which could significantly contribute to arsenic detoxification, accumulation, and immobilization while also providing a scientific foundation for future electrochemical sensor development. The minimum inhibitory concentration (MIC) value for the bacteria was 15 mM As (III). Scanning Electron Microscopy (SEM) investigation validated its intracellular As uptake capacity and demonstrated a substantial association with the MIC value. During the stationary phase, the strain’s As (III) transformation efficiency was 0.0224 mM/h. Molecular analysis by real-time qPCR showed arsenite oxidase (aioA) gene expression increased 1.6-fold in the presence of As (III) compared to the untreated cells. The immobilized whole-cell also showed As (III) conversion up to 18 days. To analyze the electrochemical oxidation in water, we developed a modified GCE/P-Arg/ErGO-AuNPs electrode, which successfully sensed and quantified conversion of As (III) into As (V) by accepting electrons; implying a functional As oxidase enzyme activity in the cells. To the best of our knowledge, this is the first report on the electrochemical observation of the As-transformation mechanism with Achromobactersp. Furthermore, the current work highlighted that our isolate might be employed as a promising candidate for arsenic bioremediation, and information acquired from this study may be helpful to open a new window for the development of a cost-effective, eco-friendly biosensor for arsenic species detection in the future.
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Affiliation(s)
- Farzana Diba
- Department of Microbiology, University of Dhaka, Dhaka, 1000, Bangladesh.,Institute of Tissue Banking and Biomaterial Research (ITBBR), Atomic Energy Research Establishment (AERE), Savar, Dhaka, 1349, Bangladesh
| | - Md Zaved Hossain Khan
- Department of Chemical Engineering, Jashore University of Science and Technology, Jashore, 7408, Bangladesh
| | - Salman Zahir Uddin
- Department of Microbiology, University of Dhaka, Dhaka, 1000, Bangladesh
| | - Arif Istiaq
- Department of Stem Cell Biology, Faculty of Arts and Sciences, Kyushu University, Fukuoka, Japan.,Graduate School of Medical Sciences, Kumamoto University, Kumamoto, Japan
| | - Md Sadikur Rahman Shuvo
- Department of Microbiology, Noakhali Science and Technology University, Noakhali, Bangladesh
| | - A S M Rubayet Ul Alam
- Department of Microbiology, Jashore University of Science and Technology, Jashore, 7408, Bangladesh
| | - M Anwar Hossain
- Department of Microbiology, University of Dhaka, Dhaka, 1000, Bangladesh.,Jashore University of Science and Technology, Jashore, 7408, Bangladesh
| | - Munawar Sultana
- Department of Microbiology, University of Dhaka, Dhaka, 1000, Bangladesh.
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19
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Banerjee A, Sarkar S, Gorai S, Kabiraj A, Bandopadhyay R. High arsenic tolerance in Brevundimonas aurantiaca PFAB1 from an arsenic-rich Indian hot spring. ELECTRON J BIOTECHN 2021. [DOI: 10.1016/j.ejbt.2021.05.006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022] Open
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20
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Alotaibi BS, Khan M, Shamim S. Unraveling the Underlying Heavy Metal Detoxification Mechanisms of Bacillus Species. Microorganisms 2021; 9:1628. [PMID: 34442707 PMCID: PMC8402239 DOI: 10.3390/microorganisms9081628] [Citation(s) in RCA: 39] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2021] [Revised: 07/08/2021] [Accepted: 07/13/2021] [Indexed: 12/26/2022] Open
Abstract
The rise of anthropogenic activities has resulted in the increasing release of various contaminants into the environment, jeopardizing fragile ecosystems in the process. Heavy metals are one of the major pollutants that contribute to the escalating problem of environmental pollution, being primarily introduced in sensitive ecological habitats through industrial effluents, wastewater, as well as sewage of various industries. Where heavy metals like zinc, copper, manganese, and nickel serve key roles in regulating different biological processes in living systems, many heavy metals can be toxic even at low concentrations, such as mercury, arsenic, cadmium, chromium, and lead, and can accumulate in intricate food chains resulting in health concerns. Over the years, many physical and chemical methods of heavy metal removal have essentially been investigated, but their disadvantages like the generation of chemical waste, complex downstream processing, and the uneconomical cost of both methods, have rendered them inefficient,. Since then, microbial bioremediation, particularly the use of bacteria, has gained attention due to the feasibility and efficiency of using them in removing heavy metals from contaminated environments. Bacteria have several methods of processing heavy metals through general resistance mechanisms, biosorption, adsorption, and efflux mechanisms. Bacillus spp. are model Gram-positive bacteria that have been studied extensively for their biosorption abilities and molecular mechanisms that enable their survival as well as their ability to remove and detoxify heavy metals. This review aims to highlight the molecular methods of Bacillus spp. in removing various heavy metals ions from contaminated environments.
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Affiliation(s)
- Badriyah Shadid Alotaibi
- Department of Pharmaceutical Sciences, College of Pharmacy, Princess Nourah Bint Abdulrahman University, Riyadh 11671, Saudi Arabia;
| | - Maryam Khan
- Institute of Molecular Biology and Biotechnology (IMBB), Defence Road Campus, The University of Lahore, Lahore 55150, Pakistan;
| | - Saba Shamim
- Institute of Molecular Biology and Biotechnology (IMBB), Defence Road Campus, The University of Lahore, Lahore 55150, Pakistan;
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21
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Abstract
Brevundimonas sp. is a bacteria able to grow in metal(loid) contaminated soil from Puchuncaví Valley, central Chile. This study has isolated a bacterial strain capable of growth under high doses of arsenic (As) (6000 mg L−1), and a draft genome sequence was generated. Additionally, real-time PCR was performed to examine the effect of As on some genes related to As resistance. Results demonstrated a total of 3275 predicted annotated genes with several genes related to the ars operon, metal(loid) resistance-related genes, metal efflux pumps, and detoxifying enzymes. Real-time PCR showed that the arsB involved in the efflux of As was down-regulated, whereas arsR, arsH, and ACR3 did not show differences with the addition of As. Our study provides novel evidence of diverse As regulating systems in tolerant bacteria that will lead to a better understanding of how microorganisms overcome toxic elements and colonize As contaminated soils and to the possible use of their specific properties in bioremediation.
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22
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Characterization of Arsenic-Resistant Klebsiella pneumoniae RnASA11 from Contaminated Soil and Water Samples and Its Bioremediation Potential. Curr Microbiol 2021; 78:3258-3267. [PMID: 34230990 DOI: 10.1007/s00284-021-02602-w] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2020] [Accepted: 06/30/2021] [Indexed: 10/20/2022]
Abstract
Rapid industrialization and intensive agriculture activities have led to a rise in heavy metal contamination all over the world. Chhattisgarh (India) being an industrial state, the soil and water are thickly contaminated with heavy metals, especially from arsenic (As). In the present study, we isolated 108 arsenic-resistant bacteria (both from soil and water) from different arsenic-contaminated industrial and mining sites of Chhattisgarh to explore the bacterial gene pool. Further, we screened 24 potential isolates out of 108 for their ability to tolerate a high level of arsenic. The sequencing of the 16S rRNA gene of bacterial isolates revealed that all these samples belong to different diverse genera including Bacillus, Enterobacter, Klebsiella, Pantoea, Acinetobacter, Cronobacter, Pseudomonas and Agrobacterium. The metal tolerance ability was determined by amplification of arsB (arsenite efflux gene) and arsC (arsenate reductase gene) from chromosomal DNA of isolated RnASA11, which was identified as Klebsiella pneumoniae through in silico analysis. The bacterial strains RpSWA2 and RnASA11 were found to tolerate 600 mM As (V) and 30 mM As (III) but the growth of strain RpSWA2 was slower than RnASA11. Furthermore, atomic absorption spectroscopy (AAS) of the sample obtained from bioremediation assay revealed that Klebsiella pneumoniae RnASA11 was able to reduce the arsenic concentration significantly in the presence of arsenate (44%) and arsenite (38.8%) as compared to control.
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23
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Biological characterization of Bacillus flexus strain SSAI1 transforming highly toxic arsenite to less toxic arsenate mediated by periplasmic arsenite oxidase enzyme encoded by aioAB genes. Biometals 2021; 34:895-907. [PMID: 33956287 DOI: 10.1007/s10534-021-00316-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2021] [Accepted: 04/29/2021] [Indexed: 12/20/2022]
Abstract
Bacillus flexus strain SSAI1 isolated from agro-industry waste, Tuem, Goa, India displayed high arsenite resistance as minimal inhibitory concentration was 25 mM in mineral salts medium. This bacterial strain exposed to 10 mM arsenite demonstrated rapid arsenite oxidation and internalization of 7 mM arsenate within 24 h. The Fourier transformed infrared (FTIR) spectroscopy of cells exposed to arsenite revealed important functional groups on the cell surface interacting with arsenite. Furthermore, scanning electron microscopy combined with electron dispersive X-ray spectroscopy (SEM-EDAX) of cells exposed to arsenite revealed clumping of cells with no surface adsorption of arsenite. Transmission electron microscopy coupled with electron dispersive X-ray spectroscopic (TEM-EDAX) analysis of arsenite exposed cells clearly demonstrated ultra-structural changes and intracellular accumulation of arsenic. Whole-genome sequence analysis of this bacterial strain interestingly revealed the presence of large number of metal(loid) resistance genes, including aioAB genes encoding arsenite oxidase responsible for the oxidation of highly toxic arsenite to less toxic arsenate. Enzyme assay further confirmed that arsenite oxidase is a periplasmic enzyme. The genome of strain SSAI1 also carried glpF, aioS and aioE genes conferring resistance to arsenite. Therefore, multi-metal(loid) resistant arsenite oxidizing Bacillus flexus strain SSAI1 has potential to bioremediate arsenite contaminated environmental sites and is the first report of its kind.
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24
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Ghosh A, Pramanik K, Bhattacharya S, Mondal S, Ghosh SK, Ghosh PK, Maiti TK. Abatement of arsenic-induced phytotoxic effects in rice seedlings by an arsenic-resistant Pantoea dispersa strain. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:21633-21649. [PMID: 33411291 DOI: 10.1007/s11356-020-11816-7] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2020] [Accepted: 11/23/2020] [Indexed: 06/12/2023]
Abstract
Population detonation and rapid industrialization are the major factors behind the reduction in cultivable land that affects crop production seriously. This situation is further being deteriorated due to the negative effects of abiotic stresses. Under such conditions, plant growth-promoting rhizobacteria (PGPR) are found to improve crop production which is essential for sustainable agriculture. This study is focused on the isolation of potent arsenic (As)-resistant PGPR from the agricultural land of West Bengal, India, and its application to reduce As translocation in rice seedlings. After screening, an As-resistant PGPR strain AS18 was identified by phenotypic characters and 16S rDNA sequence-based homology as Pantoea dispersa. This strain displayed nitrogen fixation, phosphate solubilization, 1-aminocyclopropane-1-carboxylic acid deaminase (ACCD) activity, indole-3-acetic acid (IAA) production, in addition to As (III) resistance up to 3750 μg/mL. The As removal efficiency of this strain was up to 93.12% from the culture medium as evidenced by AAS. The bioaccumulation property of AS18 strain was further validated by TEM-EDAX-XRD-XRF-FTIR studies. This strain showed significant morpho-biochemical improvements including antioxidant enzymatic activities and As-minimization in plant (rice) cells. Thus, being an As-resistant potent PGPR, AS18 strain is expected to be applied in As-spiked agricultural fields for bioremediation and phytostimulation.
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Affiliation(s)
- Antara Ghosh
- Microbiology Laboratory, Department of Botany, The University of Burdwan, Purba Bardhaman, West Bengal, 713104, India
| | - Krishnendu Pramanik
- Mycology and Plant Pathology Laboratory, Department of Botany, Siksha Bhavana, Visva-Bharati, Santiniketan, Birbhum, West Bengal, 731235, India
| | - Shatabda Bhattacharya
- Nanospinics Laboratory, Department of Materials Science & Engineering, Seoul National University, Seoul, 151-744, South Korea
| | - Sayanta Mondal
- Microbiology Laboratory, Department of Botany, The University of Burdwan, Purba Bardhaman, West Bengal, 713104, India
| | - Sudip Kumar Ghosh
- Microbiology Laboratory, Department of Botany, The University of Burdwan, Purba Bardhaman, West Bengal, 713104, India
| | | | - Tushar Kanti Maiti
- Microbiology Laboratory, Department of Botany, The University of Burdwan, Purba Bardhaman, West Bengal, 713104, India.
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25
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Mishra S, Verma SK. Differential expression of proteins in Pseudomonas mendocina SMSKVR-3 under arsenate stress. J Basic Microbiol 2021; 61:351-361. [PMID: 33448070 DOI: 10.1002/jobm.202000671] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2020] [Revised: 12/15/2020] [Accepted: 01/02/2021] [Indexed: 11/07/2022]
Abstract
This study focuses on analyzing the protein expression pattern of intracellular proteins when Pseudomonas mendocina SMSKVR-3 exposed to 300 mM of arsenate to find out the proteins that are overexpressed or exclusively expressed in response to arsenate. The sodium dodecyl sulfate-polyacrylamide gel electrophoresis analysis of protein expression at different time intervals showed the highest number of protein bands (14) that are overexpressed at 8 h of the time interval. It was also observed that treatment with at least 200 mM of As(V) is required to induce a difference in protein expression. Two-dimensional (2D)-PAGE analysis of 8-h sample exhibited 146 unique spots, 45 underexpressed, and 46 overexpressed spots in arsenate-treated sample. Based on the highest percent volume and fold change, three unique spots and one overexpressed spot were selected and analyzed by matrix-assisted laser desorption/ionization-time of flight (MALDI-TOF/TOF) mass spectrometry (MS) analysis followed by the MASCOT search. These proteins were identified as ribosome-recycling factor (20.13 kDa), polyphosphate:ADP/GDP phosphotransferase (40.88 kDa), ribonuclease P protein component (14.96 kDa) and cobalt-precorrin-5B C(1)-methyltransferase (38.43 kDa) with MASCOT score of 54, 81, 94, and 100, respectively. All of these proteins help the bacteria to overcome arsenate stress.
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Affiliation(s)
- Shraddha Mishra
- Department of Biological Sciences, Birla Institute of Technology and Science, Pilani, India
| | - Sanjay K Verma
- Department of Biological Sciences, Birla Institute of Technology and Science, Pilani, India
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Dash B, Sahu N, Singh AK, Gupta SB, Soni R. Arsenic efflux in Enterobacter cloacae RSN3 isolated from arsenic-rich soil. Folia Microbiol (Praha) 2020; 66:189-196. [PMID: 33131029 DOI: 10.1007/s12223-020-00832-2] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2020] [Accepted: 08/30/2020] [Indexed: 11/28/2022]
Abstract
In the present study, bacterial isolates were screened for arsenic resistance efficiency. Environmental isolates were isolated from arsenic-rich soil samples (i.e., from Rajnandgaon district of Chhattisgarh state, India). Amplification and sequencing of 16S rRNA gene revealed that the isolates were of Bacillus firmus RSN1, Brevibacterium senegalense RSN2, Enterobacter cloacae RSN3, Stenotrophomonas pavanii RSN6, Achromobacter mucicolens RSN7, and Ochrobactrum intermedium RSN10. Arsenite efflux gene (arsB) was successfully amplified in E. cloacae RSN3. Atomic absorption spectroscopy (AAS) analysis showed an absorption of 32.22% arsenic by the RSN3 strain. Furthermore, results of scanning electron microscopy (SEM) for morphological variations revealed an initial increase in the cell size at 1 mM sodium arsenate; however, it was decreased at 10 mM concentration in comparison to control. This change of the cell size in different metal concentrations was due to the uptake and expulsion of the metal from the cell, which also confirmed the arsenite efflux system.
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Affiliation(s)
- Biplab Dash
- Department of Agricultural Microbiology, College of Agriculture, Indira Gandhi Krishi Vishwavidyalaya, Krishak Nagar Jora, Raipur, 492012, CG, India
| | - Narayan Sahu
- Department of Agricultural Microbiology, College of Agriculture, Indira Gandhi Krishi Vishwavidyalaya, Krishak Nagar Jora, Raipur, 492012, CG, India
| | - Anup Kumar Singh
- Department of Agricultural Microbiology, College of Agriculture, Indira Gandhi Krishi Vishwavidyalaya, Krishak Nagar Jora, Raipur, 492012, CG, India
| | - S B Gupta
- Department of Agricultural Microbiology, College of Agriculture, Indira Gandhi Krishi Vishwavidyalaya, Krishak Nagar Jora, Raipur, 492012, CG, India
| | - Ravindra Soni
- Department of Agricultural Microbiology, College of Agriculture, Indira Gandhi Krishi Vishwavidyalaya, Krishak Nagar Jora, Raipur, 492012, CG, India.
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Ghosh S, Mohapatra B, Satyanarayana T, Sar P. Molecular and taxonomic characterization of arsenic (As) transforming Bacillus sp. strain IIIJ3-1 isolated from As-contaminated groundwater of Brahmaputra river basin, India. BMC Microbiol 2020; 20:256. [PMID: 32807097 PMCID: PMC7430025 DOI: 10.1186/s12866-020-01893-6] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2020] [Accepted: 07/06/2020] [Indexed: 11/10/2022] Open
Abstract
Background Microbe-mediated redox transformation of arsenic (As) leading to its mobilization has become a serious environmental concern in various subsurface ecosystems especially within the alluvial aquifers. However, detailed taxonomic and eco-physiological attributes of indigenous bacteria from As impacted aquifer of Brahmaputra river basin has remained under-studied. Results A newly isolated As-resistant and -transforming facultative anaerobic bacterium IIIJ3–1 from As-contaminated groundwater of Jorhat, Assam was characterized. Near complete 16S rRNA gene sequence affiliated the strain IIIJ3–1 to the genus Bacillus and phylogenetically placed within members of B. cereus sensu lato group with B. cereus ATCC 14579(T) as its closest relative with a low DNA-DNA relatedness (49.9%). Presence of iC17:0, iC15:0 fatty acids and menaquinone 7 corroborated its affiliation with B. cereus group, but differential hydroxy-fatty acids, C18:2 and menaquinones 5 & 6 marked its distinctiveness. High As resistance [Maximum Tolerable Concentration = 10 mM As3+, 350 mM As5+], aerobic As3+ (5 mM) oxidation, and near complete dissimilatory reduction of As 5+ (1 mM) within 15 h of growth designated its physiological novelty. Besides O2, cells were found to reduce As5+, Fe3+, SO42−, NO3−, and Se6+ as alternate terminal electron acceptors (TEAs), sustaining its anaerobic growth. Lactate was the preferred carbon source for anaerobic growth of the bacterium with As5+ as TEA. Genes encoding As5+ respiratory reductase (arr A), As3+ oxidase (aioB), and As3+ efflux systems (ars B, acr3) were detected. All these As homeostasis genes showed their close phylogenetic lineages to Bacillus spp. Reduction in cell size following As exposure exhibited the strain’s morphological response to toxic As, while the formation of As-rich electron opaque dots as evident from SEM-EDX possibly indicated a sequestration based As resistance strategy of strain IIIJ3–1. Conclusion This is the first report on molecular, taxonomic, and ecophysiological characterization of a highly As resistant, As3+ oxidizing, and dissimilatory As5+ reducing Bacillus sp. IIIJ3–1 from As contaminated sites of Brahmaputra river basin. The strain’s ability to resist and transform As along with its capability to sequester As within the cells demonstrate its potential in designing bioremediation strategies for As contaminated groundwater and other ecosystems.
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Affiliation(s)
- Soma Ghosh
- Environmental Microbiology and Genomics Laboratory, Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur, 721302, India.,Present address: CSIR- National Environmental Engineering Research Institute, Kolkata Zonal Centre, Kolkata, 700107, India
| | - Balaram Mohapatra
- Environmental Microbiology and Genomics Laboratory, Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur, 721302, India.,Present address: Department of Biosciences and Bioengineering, Indian Institute of Technology Bombay, Mumbai, 400076, India
| | - Tulasi Satyanarayana
- Department of Microbiology, University of Delhi South Campus (UDSC), New Delhi, 110021, India.,Presently affiliated to Department of Biological Sciences and Engineering, Netaji Subhas University of Technology, Sector 3 Dwarka, New Delhi, 110078, India
| | - Pinaki Sar
- Environmental Microbiology and Genomics Laboratory, Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur, 721302, India.
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Panyushkina A, Matyushkina D, Pobeguts O. Understanding Stress Response to High-Arsenic Gold-Bearing Sulfide Concentrate in Extremely Metal-Resistant Acidophile Sulfobacillus thermotolerans. Microorganisms 2020; 8:E1076. [PMID: 32707712 PMCID: PMC7409299 DOI: 10.3390/microorganisms8071076] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2020] [Revised: 07/15/2020] [Accepted: 07/17/2020] [Indexed: 12/15/2022] Open
Abstract
Biooxidation of gold-bearing arsenopyrite concentrates, using acidophilic microbial communities, is among the largest commercial biohydrometallurgical processes. However, molecular mechanisms of microbial responses to sulfide raw materials have not been widely studied. The goal of this research was to gain insight into the defense strategies of the acidophilic bacterium Sulfobacillus thermotolerans, which dominates microbial communities functioning in industrial biooxidation processes at >35 °C, against the toxic effect of the high-arsenic gold-bearing sulfide concentrate. In addition to extreme metal resistance, this acidophile proved to be one of the most As-tolerant microorganisms. Comparative proteomic analysis indicated that 30 out of 33 differentially expressed proteins were upregulated in response to the ore concentrate, while the synthesis level of the functional proteins required for cell survival was not negatively affected. Despite a high level of cellular metal(loid) accumulation, no specific metal(loid)-resistant systems were regulated. Instead, several proteins involved in the metabolic pathways and stress response, including MBL fold metallo-hydrolase, sulfide:quinone oxidoreductase, and GroEL chaperonin, may play crucial roles in resistance to the sulfide ore concentrate and arsenic, in particular. This study provides the first data on the microbial responses to sulfide ore concentrates and advances our understanding of defense mechanisms against toxic compounds in acidophiles.
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Affiliation(s)
- Anna Panyushkina
- Winogradsky Institute of Microbiology, Research Centre of Biotechnology of the Russian Academy of Sciences, Leninsky Ave., 33, bld. 2, Moscow 119071, Russia
| | - Daria Matyushkina
- Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Malaya Pirogovskaya, 1a, Moscow 119435, Russia; (D.M.); (O.P.)
| | - Olga Pobeguts
- Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Malaya Pirogovskaya, 1a, Moscow 119435, Russia; (D.M.); (O.P.)
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Li J, Ding Y, Wang K, Li N, Qian G, Xu Y, Zhang J. Comparison of humic and fulvic acid on remediation of arsenic contaminated soil by electrokinetic technology. CHEMOSPHERE 2020; 241:125038. [PMID: 31610455 DOI: 10.1016/j.chemosphere.2019.125038] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2019] [Revised: 09/30/2019] [Accepted: 10/02/2019] [Indexed: 06/10/2023]
Abstract
The use of humic acid (HA) and fulvic acid (FA) as reinforcing agents to improve the efficiency of electrokinetic remediation (EKR) were investigated for the first time using an artificially contaminated soil. A series of soil leaching tests and bench-scale EKR experiments were performed to elucidate the mechanisms of As removed from artificially contaminated soil. The characterization of total reducing capacity (TRC) and functional group were carried out to reveal the difference of HA and FA. The observations demonstrated that with 0.1 M NaOH and KCl as the anolyte, using both HA and FA enhanced the efficiency of EKR. After 25 days of EKR, the removal efficiency of TAs in HA/FA-enhanced EKR was about 2.0-3.0 times greater than when unenhanced. Compared to HA, more As was removed in EKR with FA, which has more TRC and oxygen-containing groups. These EKR experimental results, with the support of data obtained from soil leaching test, indicate that competitive adsorption, reductive dissolution and complexation were the reasons why HA and FA promoted the release of As in the soil and further enhanced the remediation efficiency.
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Affiliation(s)
- Jiangpeng Li
- School of Environmental and Chemical Engineering, Shanghai University, No.99 Shangda Rd., Shanghai, 200444, PR China; School of Environmental Science and Engineering, Southern University of Science and Technology, 1088 Xueyuan Blvd, Nanshan District, Shenzhen, 518055, PR China
| | - Ying Ding
- School of Environmental and Chemical Engineering, Shanghai University, No.99 Shangda Rd., Shanghai, 200444, PR China
| | - Kaili Wang
- School of Environmental and Chemical Engineering, Shanghai University, No.99 Shangda Rd., Shanghai, 200444, PR China
| | - Ningqing Li
- School of Environmental and Chemical Engineering, Shanghai University, No.99 Shangda Rd., Shanghai, 200444, PR China
| | - Guangren Qian
- School of Environmental and Chemical Engineering, Shanghai University, No.99 Shangda Rd., Shanghai, 200444, PR China
| | - Yunfeng Xu
- School of Environmental and Chemical Engineering, Shanghai University, No.99 Shangda Rd., Shanghai, 200444, PR China.
| | - Jia Zhang
- School of Environmental and Chemical Engineering, Shanghai University, No.99 Shangda Rd., Shanghai, 200444, PR China.
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Phenotypic and genomic analysis of multiple heavy metal–resistant Micrococcus luteus strain AS2 isolated from industrial waste water and its potential use in arsenic bioremediation. Appl Microbiol Biotechnol 2020; 104:2243-2254. [DOI: 10.1007/s00253-020-10351-2] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2019] [Revised: 12/23/2019] [Accepted: 01/05/2020] [Indexed: 12/23/2022]
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31
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Mohapatra B, Kazy SK, Sar P. Comparative genome analysis of arsenic reducing, hydrocarbon metabolizing groundwater bacterium Achromobacter sp. KAs 3-5T explains its competitive edge for survival in aquifer environment. Genomics 2019; 111:1604-1619. [DOI: 10.1016/j.ygeno.2018.11.004] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2018] [Revised: 10/25/2018] [Accepted: 11/05/2018] [Indexed: 11/24/2022]
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Pandey N, Manjunath K, Sahu K. Screening of plant growth promoting attributes and arsenic remediation efficacy of bacteria isolated from agricultural soils of Chhattisgarh. Arch Microbiol 2019; 202:567-578. [PMID: 31741012 DOI: 10.1007/s00203-019-01773-2] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2019] [Revised: 10/23/2019] [Accepted: 11/11/2019] [Indexed: 11/25/2022]
Abstract
Arsenic (As) resistant indigenous bacteria with discrete minimum inhibitory concentration values for arsenate [As(V)] and arsenite [As(III)] were isolated from the paddy fields of different regions of Chhattisgarh, India, following enrichment culture technique. Evaluation of the plant growth promoting (PGP) properties of the isolates revealed that two rod-shaped Gram-positive bacteria viz., ARP2 and ART2 acquired various PGP traits, including phosphate solubilization, production of siderophore, indole acetic acid, ammonia, and exopolysaccharide. Both the isolates significantly increased (40-80%) the root length of Oryza sativa L. even under As-exposure. Sequencing of 16S rRNA gene identified these isolates as Bacillus nealsonii strain ARP2 and Bacillus tequilensis strain ART2, respectively. Isolate ARP2 exhibited arsenate reductase activity thereby rapidly reduced As(V) into As(III), achieving a reduction rate of 37.5 μM min-1. Alike, strain ART2 was capable of oxidizing As(III) into As(V) via arsenite oxidase enzyme, and revealed the oxidation rate of 21.8 μM min-1. Quantitative estimation of As through atomic absorption spectrophotometer revealed that the isolates ARP2 and ART2 removed 93 ± 0.2% and 77 ± 0.14% of As(V) and As(III), respectively, from As-containing culture media. The FTIR analysis showed the interaction of As with the cell membrane and was further confirmed by SEM and TEM techniques, which marked the increase in cell volume owing to successive accumulation of As. The As-resistant and PGP properties of above two isolates demonstrates their potentiality for sustainable bioremediation of As, and establishment of flora in As-rich environment.
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Affiliation(s)
- Neha Pandey
- School of Studies in Biotechnology, Pt. Ravishankar Shukla University, Raipur, 492 010, India
- Department of Microbiology and Biotechnology, Jnana Bharathi Campus, Bangalore University, Bengaluru, 560 056, India
- Kristu Jayanti College (Autonomous), K. Narayanapura, Kothanur, Bengaluru, 560 077, India
| | - Kiragandur Manjunath
- Department of Microbiology and Biotechnology, Jnana Bharathi Campus, Bangalore University, Bengaluru, 560 056, India
| | - Keshavkant Sahu
- School of Studies in Biotechnology, Pt. Ravishankar Shukla University, Raipur, 492 010, India.
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Kumar P, Tokas J, Singal HR. Amelioration of Chromium VI Toxicity in Sorghum (Sorghum bicolor L.) using Glycine Betaine. Sci Rep 2019; 9:16020. [PMID: 31690803 PMCID: PMC6831683 DOI: 10.1038/s41598-019-52479-w] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2019] [Accepted: 08/09/2019] [Indexed: 12/17/2022] Open
Abstract
The main objective of the present research work was to study the effect of Cr toxicity and its amelioration by glycine betaine (GB) in sorghum (HJ 541 and SSG 59-3). Chromium (Cr VI), 2 and 4 ppm led to a significant reduction in plant height, root length, chlorophyll content, antioxidant enzymes viz. catalase, peroxidase, ascorbate peroxidase, glutathione reductase, polyphenol oxidase, and superoxide dismutase; and metabolites viz. ascorbate, proline, and glutathione. The results of the present study supported the findings that the application of GB can minimize or reduce the toxic effects caused by Cr VI which reaches the plants via soil, water, and air pollution. It is concluded that GB at both 50, as well as 100 mM concentrations, successfully ameliorated Cr VI (up to 4 ppm) toxicity and its application may be recommended for crops affected by Cr VI toxicity to get better growth and yield.
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Affiliation(s)
- Praveen Kumar
- Department of Biochemistry, College of Basic Sciences and Humanities, CCSHAU Hisar, 125004, Haryana, India.
| | - Jayanti Tokas
- Department of Biochemistry, College of Basic Sciences and Humanities, CCSHAU Hisar, 125004, Haryana, India
| | - H R Singal
- Department of Biochemistry, College of Basic Sciences and Humanities, CCSHAU Hisar, 125004, Haryana, India
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Enhanced Arsenic Tolerance in Triticum aestivum Inoculated with Arsenic-Resistant and Plant Growth Promoter Microorganisms from a Heavy Metal-Polluted Soil. Microorganisms 2019; 7:microorganisms7090348. [PMID: 31547348 PMCID: PMC6780836 DOI: 10.3390/microorganisms7090348] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2019] [Revised: 09/06/2019] [Accepted: 09/07/2019] [Indexed: 12/16/2022] Open
Abstract
In soils multi-contaminated with heavy metal and metalloids, the establishment of plant species is often hampered due to toxicity. This may be overcome through the inoculation of beneficial soil microorganisms. In this study, two arsenic-resistant bacterial isolates, classified as Pseudomonas gessardii and Brevundimonas intermedia, and two arsenic-resistant fungi, classified as Fimetariella rabenhortii and Hormonema viticola, were isolated from contaminated soil from the Puchuncaví valley (Chile). Their ability to produce indoleacetic acid and siderophores and mediate phosphate solubilization as plant growth-promoting properties were evaluated, as well as levels of arsenic resistance. A real time PCR applied to Triticum aestivum that grew in soil inoculated with the bacterial and fungal isolates was performed to observe differences in the relative expression of heavy metal stress defense genes. The minimum inhibitory concentration of the bacterial strains to arsenate was up to 7000 mg·L−1 and that of the fungal strains was up to 2500 mg·L−1. P. gessardi was able to produce siderophores and solubilize phosphate; meanwhile, B. intermedia and both fungi produced indoleacetic acid. Plant dry biomass was increased and the relative expression of plant metallothionein, superoxide dismutase, ascorbate peroxidase and phytochelatin synthase genes were overexpressed when P. gessardii plus B. intermedia were inoculated.
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35
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An endophytic Kocuria palustris strain harboring multiple arsenate reductase genes. Arch Microbiol 2019; 201:1285-1293. [DOI: 10.1007/s00203-019-01692-2] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2018] [Revised: 05/13/2019] [Accepted: 06/13/2019] [Indexed: 11/25/2022]
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36
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Characterization of arsenic resistant plant‐growth promoting indigenous soil bacteria isolated from Center‐East regions of India. J Basic Microbiol 2019; 59:807-819. [DOI: 10.1002/jobm.201800658] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2018] [Revised: 04/03/2019] [Accepted: 04/25/2019] [Indexed: 01/18/2023]
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37
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Orellana-Saez M, Pacheco N, Costa JI, Mendez KN, Miossec MJ, Meneses C, Castro-Nallar E, Marcoleta AE, Poblete-Castro I. In-Depth Genomic and Phenotypic Characterization of the Antarctic Psychrotolerant Strain Pseudomonas sp. MPC6 Reveals Unique Metabolic Features, Plasticity, and Biotechnological Potential. Front Microbiol 2019; 10:1154. [PMID: 31178851 PMCID: PMC6543543 DOI: 10.3389/fmicb.2019.01154] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2019] [Accepted: 05/07/2019] [Indexed: 12/12/2022] Open
Abstract
We obtained the complete genome sequence of the psychrotolerant extremophile Pseudomonas sp. MPC6, a natural Polyhydroxyalkanoates (PHAs) producing bacterium able to rapidly grow at low temperatures. Genomic and phenotypic analyses allowed us to situate this isolate inside the Pseudomonas fluorescens phylogroup of pseudomonads as well as to reveal its metabolic versatility and plasticity. The isolate possesses the gene machinery for metabolizing a variety of toxic aromatic compounds such as toluene, phenol, chloroaromatics, and TNT. In addition, it can use both C6- and C5-carbon sugars like xylose and arabinose as carbon substrates, an uncommon feature for bacteria of this genus. Furthermore, Pseudomonas sp. MPC6 exhibits a high-copy number of genes encoding for enzymes involved in oxidative and cold-stress response that allows it to cope with high concentrations of heavy metals (As, Cd, Cu) and low temperatures, a finding that was further validated experimentally. We then assessed the growth performance of MPC6 on glycerol using a temperature range from 0 to 45°C, the latter temperature corresponding to the limit at which this Antarctic isolate was no longer able to propagate. On the other hand, the MPC6 genome comprised considerably less virulence and drug resistance factors as compared to pathogenic Pseudomonas strains, thus supporting its safety. Unexpectedly, we found five PHA synthases within the genome of MPC6, one of which clustered separately from the other four. This PHA synthase shared only 40% sequence identity at the amino acid level against the only PHA polymerase described for Pseudomonas (63-1 strain) able to produce copolymers of short- and medium-chain length PHAs. Batch cultures for PHA synthesis in Pseudomonas sp. MPC6 using sugars, decanoate, ethylene glycol, and organic acids as carbon substrates result in biopolymers with different monomer compositions. This indicates that the PHA synthases play a critical role in defining not only the final chemical structure of the biosynthesized PHA, but also the employed biosynthetic pathways. Based on the results obtained, we conclude that Pseudomonas sp. MPC6 can be exploited as a bioremediator and biopolymer factory, as well as a model strain to unveil molecular mechanisms behind adaptation to cold and extreme environments.
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Affiliation(s)
- Matias Orellana-Saez
- Biosystems Engineering Laboratory, Center for Bioinformatics and Integrative Biology, Faculty of Life Sciences, Universidad Andres Bello, Santiago, Chile
| | - Nicolas Pacheco
- Biosystems Engineering Laboratory, Center for Bioinformatics and Integrative Biology, Faculty of Life Sciences, Universidad Andres Bello, Santiago, Chile
| | - José I Costa
- Integrative Microbiology Group, Departamento de Biología, Facultad de Ciencias, Universidad de Chile, Santiago, Chile
| | - Katterinne N Mendez
- Center for Bioinformatics and Integrative Biology, Faculty of Life Science, Universidad Andres Bello, Santiago, Chile
| | - Matthieu J Miossec
- Computational Genomics Laboratory, Center for Bioinformatics and Integrative Biology, Faculty of Life Science, Universidad Andres Bello, Santiago, Chile
| | - Claudio Meneses
- Centro de Biotecnología Vegetal, Facultad de Ciencias de la Vida, Universidad Andres Bello, Santiago, Chile.,FONDAP Center for Genome Regulation, Santiago, Chile
| | - Eduardo Castro-Nallar
- Center for Bioinformatics and Integrative Biology, Faculty of Life Science, Universidad Andres Bello, Santiago, Chile
| | - Andrés E Marcoleta
- Integrative Microbiology Group, Departamento de Biología, Facultad de Ciencias, Universidad de Chile, Santiago, Chile
| | - Ignacio Poblete-Castro
- Biosystems Engineering Laboratory, Center for Bioinformatics and Integrative Biology, Faculty of Life Sciences, Universidad Andres Bello, Santiago, Chile
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Rathod J, Dhanani AS, Jean JS, Jiang WT. The whole genome insight on condition-specific redox activity and arsenopyrite interaction promoting As-mobilization by strain Lysinibacillus sp. B2A1. JOURNAL OF HAZARDOUS MATERIALS 2019; 364:671-681. [PMID: 30399550 DOI: 10.1016/j.jhazmat.2018.10.042] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2018] [Revised: 09/21/2018] [Accepted: 10/14/2018] [Indexed: 06/08/2023]
Abstract
A gram-positive spore former, Lysinibacillus sp. B2A1 was isolated from a high arsenic containing groundwater of Beimen2A well, Chianan Plain area, Southwestern Taiwan. Noteworthy, in the subsurface-mimicking anoxic incubation with a Na-lactate amendment system, this isolate could interact with arsenic-source mineral arsenopyrite and enhance arsenic mobilization. Further, the isolate showed elevated levels of arsenic resistance, 200 mM and 7.5 mM for arsenate and arsenite, respectively. Lysinibacillus sp. B2A1 demonstrated condition-specific redox activities including salient oxic oxidation of arsenite and anoxic reduction of arsenate. The elevated rate of As(III) oxidation (Vmax = 0.13 μM min-1 per 106 cells, Km = 15.3 μM) under oxic conditions was potent. Correlating with stout persistence in an arsenic-rich niche, remarkably, the lesser toxic effects of arsenic ions on bacterial sporulation frequency and germination highlight this strain's ability to thrive under catastrophic conditions. Moreover, the whole genome analysis elucidated diverse metal redox/resistance genes that included a potential arsenite S-adenosylmethyltransferase capable of mitigating arsenite toxicity. Owing to its arsenic resistance, conditional redox activities and ability to interact with arsenic minerals leading to arsenic mobilization, the presence of such spore-forming strains could be a decisive indication towards arsenic mobilization in subsurface aquifers having a high concentration of soluble arsenic or its source minerals.
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Affiliation(s)
- Jagat Rathod
- Department of Earth Sciences, National Cheng Kung University, 1st University Road, Tainan, 70101, Taiwan
| | - Akhilesh S Dhanani
- Department of Pharmacology, Room 5-D, Tupper Medical Building,5850 College Street, Dalhousie University, Halifax, NS, B3H 4R2, Canada
| | - Jiin-Shuh Jean
- Department of Earth Sciences, National Cheng Kung University, 1st University Road, Tainan, 70101, Taiwan.
| | - Wei-Teh Jiang
- Department of Earth Sciences, National Cheng Kung University, 1st University Road, Tainan, 70101, Taiwan
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Teng Z, Shao W, Zhang K, Huo Y, Li M. Characterization of phosphate solubilizing bacteria isolated from heavy metal contaminated soils and their potential for lead immobilization. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2019; 231:189-197. [PMID: 30342331 DOI: 10.1016/j.jenvman.2018.10.012] [Citation(s) in RCA: 77] [Impact Index Per Article: 15.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2018] [Revised: 09/29/2018] [Accepted: 10/04/2018] [Indexed: 06/08/2023]
Abstract
Phosphate solubilizing bacteria (PSB) were isolated from heavy metal contaminated soils and their potentials for lead (Pb) immobilization in soil were studied in this paper. 53 PSB strains were isolated and their minimum inhibitory concentrations (MICs) for lead were determined. The results showed that strains B3, B4, B10, F2-1 and L1-5 had relatively high lead resistant capabilities with MICs ranged from 0.5 to 8 mM, and were identified as species of Leclercia adecarboxylata and Pseudomonas putida by 16S rRNA. The most efficient PSB strains could solubilize 200 mg L-1 of P, and phosphate solubilizing capacity of those PSBs was related to the concentrations of organic acids, acid phosphatase activity and pH. Furthermore, the growth pattern of L1-5 strain with the presence of Pb(NO3)2 was observed and a mechanism of biomineralization of lead ions in bacteria biomass was determined by FT-IR and XRD analyses. Results showed that high concentration of lead can inhibit the growth of PSBs, and L1-5 isolate can transform lead ions into lead hydroxyapatite and pyromorphite. The PSBs, which possessing the properties of immobilizing lead through phosphate solubilization and biomineralization could be exploited for bioremediation of Pb polluted soils in future.
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Affiliation(s)
- Zedong Teng
- College of Environmental Science and Engineering, Beijing Forestry University, Beijing, 100083, China; Beijing Key Lab for Source Control Technology of Water Pollution, Beijing Forestry University, Beijing, 100083, China
| | - Wen Shao
- College of Environmental Science and Engineering, Beijing Forestry University, Beijing, 100083, China; Beijing Key Lab for Source Control Technology of Water Pollution, Beijing Forestry University, Beijing, 100083, China
| | - Keyao Zhang
- College of Environmental Science and Engineering, Beijing Forestry University, Beijing, 100083, China; Beijing Key Lab for Source Control Technology of Water Pollution, Beijing Forestry University, Beijing, 100083, China
| | - Yaoqiang Huo
- College of Environmental Science and Engineering, Beijing Forestry University, Beijing, 100083, China; Beijing Key Lab for Source Control Technology of Water Pollution, Beijing Forestry University, Beijing, 100083, China
| | - Min Li
- College of Environmental Science and Engineering, Beijing Forestry University, Beijing, 100083, China; Beijing Key Lab for Source Control Technology of Water Pollution, Beijing Forestry University, Beijing, 100083, China.
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Arsenite biotransformation and bioaccumulation by Klebsiella pneumoniae strain SSSW7 possessing arsenite oxidase (aioA) gene. Biometals 2018; 32:65-76. [PMID: 30471007 DOI: 10.1007/s10534-018-0158-7] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2018] [Accepted: 11/17/2018] [Indexed: 10/27/2022]
Abstract
Arsenite oxidizing Klebsiella pneumoniae strain SSSW7 isolated from shipyard waste Goa, India showed a minimum inhibitory concentration of 21 mM in mineral salts medium. The strain possessed a small supercoiled plasmid and PCR amplification of arsenite oxidase gene (aioA) was observed on plasmid as well as chromosomal DNA. It was confirmed that arsenite oxidase enzyme was a periplasmic protein with a 47% increase in arsenite oxidase activity at 1 mM sodium arsenite. Scanning electron microscopy coupled with electron dispersive X-ray spectroscopic (SEM-EDS) analysis of 15 mM arsenite exposed cells revealed long chains of cells with no surface adsorption of arsenic. Transmission electron microscopy combined with electron dispersive X-ray spectroscopic (TEM-EDS) analysis demonstrated plasma membrane disruption, cytoplasmic condensation and periplasmic accumulation of arsenic. The bacterial strain oxidized 10 mM of highly toxic arsenite to less toxic arsenate after 24 h of incubation. Fourier transformed infrared (FTIR) spectroscopy confirmed the interaction of arsenite with functional groups present on the bacterial cell surface. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) analysis of 5 mM arsenite exposed cells demonstrated over-expression of 87 kDa and 14 kDa proteins of two subunits aioA and aioB of heterodimer arsenite oxidase enzyme as compared to control cells. Therefore, this bacterial strain might be employed as a potential candidate for bioremediation of arsenite contaminated environmental sites.
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Ghosh PK, Maiti TK, Pramanik K, Ghosh SK, Mitra S, De TK. The role of arsenic resistant Bacillus aryabhattai MCC3374 in promotion of rice seedlings growth and alleviation of arsenic phytotoxicity. CHEMOSPHERE 2018; 211:407-419. [PMID: 30077937 DOI: 10.1016/j.chemosphere.2018.07.148] [Citation(s) in RCA: 64] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2018] [Revised: 07/23/2018] [Accepted: 07/24/2018] [Indexed: 06/08/2023]
Abstract
The biological agents have been utilized as an affordable alternative to conventional costly metal remediation technologies for last few years. The present investigation introduces arsenic (As) resistant plant growth promoting rhizobacteria (PGPR) isolated from the As-contaminated agricultural field of West Bengal, India that alleviates arsenic-induced toxicity and exhibited many plant growth promoting traits (PGP). The isolated strain designated as AS6 has identified as Bacillus aryabhattai based on phenotypic characteristics, physio-biochemical tests, MALDI-TOFMS bio-typing, FAME analysis and 16S rDNA sequence homology. The strain found to exhibit five times more resistance to arsenate than arsenite with minimum inhibitory concentrations (MIC) being 100 mM and 20 mM respectively. The result showed that accumulation of As was evidenced by SEM- EDAX, TEM-EDAX studies. The intracellular accumulation of arsenic was also confirmed as in bacterial biomass by AAS, FTIR, XRD and XRF analyses. The increased rate of As (V) reduction by this strain found to be exploited for the remediation of arsenic in the contaminated agricultural field. The strain also found to exhibit important PGP traits viz., ACC deaminase activity (2022 nmol α-ketobutyrate/mg protein/h), IAA production (166 μg/ml), N2 fixation (0.32 μgN fixed/h/mg proteins) and siderophore production (72%) etc. Positive influenced of AS6 strain on rice seedlings growth promotion under As stress was observed considering the several morphological, biochemical parameters including antioxidants activities as compared with an uninoculated set. Thus this strain might be exploited for stress amelioration and plant growth enhancement of rice cultivar under arsenic spiked agricultural soil.
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Affiliation(s)
- Pallab Kumar Ghosh
- Department of Marine Science, Ballygunge Science College Campus, Calcutta University, 35, B.C.Road, Kolkata, 700019, India.
| | - Tushar Kanti Maiti
- Microbiology Laboratory, CAS, Department of Botany, Burdwan University, Burdwan, Pin. 713104, WB, India
| | - Krishnendu Pramanik
- Microbiology Laboratory, CAS, Department of Botany, Burdwan University, Burdwan, Pin. 713104, WB, India
| | - Sudip Kumar Ghosh
- Microbiology Laboratory, CAS, Department of Botany, Burdwan University, Burdwan, Pin. 713104, WB, India
| | - Soumik Mitra
- Microbiology Laboratory, CAS, Department of Botany, Burdwan University, Burdwan, Pin. 713104, WB, India
| | - Tarun Kumar De
- Department of Marine Science, Ballygunge Science College Campus, Calcutta University, 35, B.C.Road, Kolkata, 700019, India
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Das J, Sarkar P. Remediation of arsenic in mung bean (Vigna radiata) with growth enhancement by unique arsenic-resistant bacterium Acinetobacter lwoffii. THE SCIENCE OF THE TOTAL ENVIRONMENT 2018; 624:1106-1118. [PMID: 29625525 DOI: 10.1016/j.scitotenv.2017.12.157] [Citation(s) in RCA: 51] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/19/2017] [Revised: 12/07/2017] [Accepted: 12/14/2017] [Indexed: 05/10/2023]
Abstract
Arsenic, a carcinogenic and toxic contaminant of soil and water, affects human health adversely. During last few decades, it has been an important global environmental issue. Among several arsenic detoxification methods remediation using arsenic resistant microbes is proved to be environment-friendly and cost-effective. This study aimed to test the effects of arsenic utilizing bacterial strain Acinetobacter lwoffii (RJB-2) on arsenic uptake and growth of mung bean plants (Vigna radiata). RJB-2 exhibited tolerance up to 125mM of arsenic (V) and 50mM of arsenic (III). RJB-2 produced plant growth promoting substances e.g. indole acetic acid (IAA), siderophores, exopolysaccharide (EPS) and phosphate solubilization in the absence and in presence of arsenic. Pot experiments were used to scrutinize the role of RJB-2 on arsenic uptake and growth of mung bean plants grown in soil amended with 22.5mgkg-1 of sodium arsenate (Na2HAsO4·7H2O). RJB-2 could arrest arsenic uptake in just 7days and increase plant growth, number of plants per pot, chlorophyll and carotenoid content of the mung bean plants. RJB-2 formed biofilm and its root-association helped to abate arsenic uptake in mung bean. Confocal and light microscopic studies also revealed the abatement of arsenic uptake and increase in chlorophyll content in mung bean plants in presence of RJB-2. RJB-2 was also responsible for less production of reactive oxygen species (ROS) in mung bean plants reducing the oxidative damage caused by arsenic. The lower percentage of electrolytic leakage (EL) in RJB-2 inoculated mung bean plants proved arsenic abatement. The study also reported the distribution of arsenic in various parts of mung bean plant. RJB-2 owing to its intrinsic abilities of plant growth promotion even in presence of high concentrations of arsenic could inhibit arsenic uptake completely and therefore it could be used in large-scale cultivation for phytostabilization of plants.
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Affiliation(s)
- Joyati Das
- Biosensor Laboratory, Department of Polymer Science and Technology, University of Calcutta, 92, A.P.C. Road, Kolkata 700009, West Bengal, India
| | - Priyabrata Sarkar
- Biosensor Laboratory, Department of Polymer Science and Technology, University of Calcutta, 92, A.P.C. Road, Kolkata 700009, West Bengal, India; Department of Chemical Engineering, Calcutta Institute of Technology, Banitabla, Kolkata 711316, West Bengal, India.
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Banerjee S, Banerjee A, Sarkar P. Statistical optimization of arsenic biosorption by microbial enzyme via Ca-alginate beads. JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH. PART A, TOXIC/HAZARDOUS SUBSTANCES & ENVIRONMENTAL ENGINEERING 2018; 53:436-442. [PMID: 29278978 DOI: 10.1080/10934529.2017.1409009] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Bioremediation of arsenic using green technology via microbial enzymes has attracted scientists due to its simplicity and cost effectiveness. Statistical optimization of arsenate bioremediation was conducted by the enzyme arsenate reductase extracted from arsenic tolerant bacterium Pseudomonas alcaligenes. Response surface methodology based on Box-Behnken design matrix was performed to determine the optimal operational conditions of a multivariable system and their interactive effects on the bioremediation process. The highest biosorptive activity of 96.2 µg gm-1 of beads was achieved under optimized conditions (pH = 7.0; As (V) concentration = 1000 ppb; time = 2 h). SEM analysis showed the morphological changes on the surface of enzyme immobilized gluteraldehyde crosslinked Ca-alginate beads. The immobilized enzyme retained its activity for 8 cycles. ANOVA with a high correlation coefficient (R2 > 0.99) and lower "Prob > F"value (<0.0001) corroborated the second-order polynomial model for the biosorption process. This study on the adsorptive removal of As (V) by enzyme-loaded biosorbent revealed a possible way of its application in large scale treatment of As (V)-contaminated water bodies.
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Affiliation(s)
- Suchetana Banerjee
- a Department of Polymer Science and technology , Biosensor Laboratory, University of Calcutta , Kolkata , West Bengal , India
| | - Anindita Banerjee
- a Department of Polymer Science and technology , Biosensor Laboratory, University of Calcutta , Kolkata , West Bengal , India
| | - Priyabrata Sarkar
- a Department of Polymer Science and technology , Biosensor Laboratory, University of Calcutta , Kolkata , West Bengal , India
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Satyapal GK, Mishra SK, Srivastava A, Ranjan RK, Prakash K, Haque R, Kumar N. Possible bioremediation of arsenic toxicity by isolating indigenous bacteria from the middle Gangetic plain of Bihar, India. ACTA ACUST UNITED AC 2018. [PMID: 29541605 PMCID: PMC5849785 DOI: 10.1016/j.btre.2018.02.002] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
In middle Gangetic plains, high arsenic concentration is present in water, which causes a significant health risk. Two bacterial isolates, AK1 (KY569423) and AK9 (KY569424) were isolated and characterised for Arsenic detoxification. aoxR, aoxB and aoxC genes were also observed in the isolated starin which help in arsenic detoxification by oxidation method.
In middle Gangetic plain, high arsenic concentration is present in water, which causes a significant health risk. Total 48 morphologically distinct arsenite resistant bacteria were isolated from middle Gangetic plain. The minimum inhibitory concentration (MIC) values of arsenite varied widely in the range 1–15 mM of the isolates. On the basis of their MIC, two isolates, AK1 (KY569423) and AK9 (KY569424) were selected. The analysis of the 16S rRNA gene sequence of selected isolates revealed that they are belong to the genus Pseudomonas. The AgNO3 test based microplate method revealed that isolates, AK1 and AK9, have potential in transformation of arsenic species. Further, the presence of aoxR, aoxB and aoxC genes in the both isolated strain AK1 and AK9 was confirmed, which play an important role in arsenic bioremediation by arsenite oxidation. Isolated strains also showed heavy metal resistance against Cr(IV), Ni(II), Co(II), Pb(II), Cu(II), Hg(II), Ag(I) and Cd(II).
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Affiliation(s)
- Ghanshyam Kumar Satyapal
- Centre for Biological Sciences (Biotechnology), Central University of South Bihar, Patna, Bihar, India
| | - Santosh Kumar Mishra
- Centre for Biological Sciences (Biotechnology), Central University of South Bihar, Patna, Bihar, India
| | - Amrita Srivastava
- Centre for Biological Sciences (Life Science), Central University of South Bihar, Patna, Bihar, India
| | - Rajesh Kumar Ranjan
- Centre for Environmental Sciences, Central University of South Bihar, Patna, Bihar, India
| | - Krishna Prakash
- Centre for Biological Sciences (Biotechnology), Central University of South Bihar, Patna, Bihar, India
| | - Rizwanul Haque
- Centre for Biological Sciences (Biotechnology), Central University of South Bihar, Patna, Bihar, India
| | - Nitish Kumar
- Centre for Biological Sciences (Biotechnology), Central University of South Bihar, Patna, Bihar, India
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Dunivin TK, Miller J, Shade A. Taxonomically-linked growth phenotypes during arsenic stress among arsenic resistant bacteria isolated from soils overlying the Centralia coal seam fire. PLoS One 2018; 13:e0191893. [PMID: 29370270 PMCID: PMC5785013 DOI: 10.1371/journal.pone.0191893] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2017] [Accepted: 01/12/2018] [Indexed: 02/05/2023] Open
Abstract
Arsenic (As), a toxic element, has impacted life since early Earth. Thus, microorganisms have evolved many As resistance and tolerance mechanisms to improve their survival outcomes given As exposure. We isolated As resistant bacteria from Centralia, PA, the site of an underground coal seam fire that has been burning since 1962. From a 57.4°C soil collected from a vent above the fire, we isolated 25 unique aerobic As resistant bacterial strains spanning seven genera. We examined their diversity, resistance gene content, transformation abilities, inhibitory concentrations, and growth phenotypes. Although As concentrations were low at the time of soil collection (2.58 ppm), isolates had high minimum inhibitory concentrations (MICs) of arsenate and arsenite (>300 mM and 20 mM respectively), and most isolates were capable of arsenate reduction. We screened isolates (PCR and sequencing) using 12 published primer sets for six As resistance genes (AsRGs). Genes encoding arsenate reductase (arsC) and arsenite efflux pumps (arsB, ACR3(2)) were present, and phylogenetic incongruence between 16S rRNA genes and AsRGs provided evidence for horizontal gene transfer. A detailed investigation of differences in isolate growth phenotypes across As concentrations (lag time to exponential growth, maximum growth rate, and maximum OD590) showed a relationship with taxonomy, providing information that could help to predict an isolate's performance given As exposure in situ. Our results suggest that microbiological management and remediation of environmental As could be informed by taxonomically-linked As tolerance, potential for resistance gene transferability, and the rare biosphere.
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Affiliation(s)
- Taylor K. Dunivin
- Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing, Michigan, United States of America
- Environmental and Integrative Toxicological Sciences Doctoral Program, Michigan State University, East Lansing, Michigan, United States of America
| | - Justine Miller
- Lyman Briggs College, Michigan State University, East Lansing, Michigan, United States of America
| | - Ashley Shade
- Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing, Michigan, United States of America
- Program in Ecology, Evolutionary Biology and Behavior, Michigan State University, East Lansing, Michigan, United States of America
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Mallick I, Bhattacharyya C, Mukherji S, Dey D, Sarkar SC, Mukhopadhyay UK, Ghosh A. Effective rhizoinoculation and biofilm formation by arsenic immobilizing halophilic plant growth promoting bacteria (PGPB) isolated from mangrove rhizosphere: A step towards arsenic rhizoremediation. THE SCIENCE OF THE TOTAL ENVIRONMENT 2018; 610-611:1239-1250. [PMID: 28851144 DOI: 10.1016/j.scitotenv.2017.07.234] [Citation(s) in RCA: 80] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2017] [Revised: 07/26/2017] [Accepted: 07/26/2017] [Indexed: 06/07/2023]
Abstract
Arsenic (As) uptake by plants is largely influenced by the presence of microbial consortia and their interactions with As. In the coastal region of Bengal deltaic plain of Eastern India, the As-contaminated groundwater is frequently used for irrigation purposes resulting in an elevated level of soil As in agricultural lands. The health hazards associated with As necessitates development of cost-effective remediation strategies to reclaim contaminated agricultural lands. Among the available technologies developed in recent times, bioremediation using bacteria has been found to be the most propitious. In this study, two As-resistant halophilic bacterial strains Kocuria flava AB402 and Bacillus vietnamensis AB403 were isolated, identified and characterized from mangrove rhizosphere of Sundarban. The isolates, AB402 and AB403, could tolerate 35mM and 20mM of arsenite, respectively. The effect of As on the exopolysaccharide (EPS) synthesis, biofilm formation, and root association was evaluated for both the bacterial strains. Arsenic adsorption on the cell surfaces and intracellular accumulation in both the bacterial strains were promising under culture conditions. Moreover, both the strains when used as inoculum, not only promoted the growth of rice seedlings but also decreased As uptake and accumulation in plants.
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Affiliation(s)
- Ivy Mallick
- Department of Biochemistry, Bose Institute, P1/12, C.I.T Road, Scheme VIIM, Kolkata 700054, West Bengal, India
| | - Chandrima Bhattacharyya
- Department of Biochemistry, Bose Institute, P1/12, C.I.T Road, Scheme VIIM, Kolkata 700054, West Bengal, India
| | - Shayantan Mukherji
- Department of Biochemistry, Bose Institute, P1/12, C.I.T Road, Scheme VIIM, Kolkata 700054, West Bengal, India
| | - Dhritiman Dey
- Department of Biochemistry, Bose Institute, P1/12, C.I.T Road, Scheme VIIM, Kolkata 700054, West Bengal, India
| | | | | | - Abhrajyoti Ghosh
- Department of Biochemistry, Bose Institute, P1/12, C.I.T Road, Scheme VIIM, Kolkata 700054, West Bengal, India.
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Basu S, Paul T, Yadav P, Debnath A, Sarkar K. Molecular Study of Indigenous Bacterial Community Composition on Exposure to Soil Arsenic Concentration Gradient. Pol J Microbiol 2017; 66:209-221. [PMID: 28735305 DOI: 10.5604/01.3001.0010.7838] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Community structure of bacteria present in arsenic contaminated agricultural soil was studied with qPCR (quantitative PCR) and DGGE (Denaturing Gradient Gel Electrophoresis) as an indicator of extreme stresses. Copy number of six common bacterial taxa (Acidobacteria, Actinobacteria, α-, β- and γ-Proteobacteria, Firmicutes) was calculated using group specific primers of 16S rDNA. It revealed that soil contaminated with low concentration of arsenic was dominated by both Actinobacteria and Proteobacteria but a shift towards Proteobacteria was observed with increasing arsenic concentration, and number of Actinobacteria eventually decreases. PCA (Principle Component Analysis) plot of bacterial community composition indicated a distinct resemblance among high arsenic content samples, while low arsenic content samples remained separated from others. Cluster analysis of soil parameters identifies three clusters, each of them was related to the arsenic content. Further, cluster analysis of 16S rDNA based DGGE fingerprint markedly distributed the soil bacterial populations into low (< 10 ppm) and high (> 10 ppm) arsenic content subgroups. Following analysis of diversity indices shows significant variation in bacterial community structure. MDS (Multi Dimensional Scaling) plot revealed distinction in the distribution of each sample denoting variation in bacterial diversity. Phylogenetic sequence analysis of fragments excised from DGGE gel revealed the presence of γ-Proteobacteria group across the study sites. Collectively, our experiments indicated that gradient of arsenic contamination affected the shape of the soil bacterial population by significant structural shift.
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Affiliation(s)
- Semanti Basu
- Department of Microbiology, University of Kalyani, Nadia, West Bengal, India
| | - Tanima Paul
- Department of Microbiology, University of Kalyani, Nadia, West Bengal, India
| | - Priya Yadav
- Department of Microbiology, University of Kalyani, Nadia, West Bengal, India
| | - Abhijit Debnath
- Department of Agricultural Chemistry and Soil Science, BCKV, Mohanpur, Nadia, West Bengal, India
| | - Keka Sarkar
- Department of Microbiology, University of Kalyani, Nadia, West Bengal, India
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48
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Bhattacharyya C, Bakshi U, Mallick I, Mukherji S, Bera B, Ghosh A. Genome-Guided Insights into the Plant Growth Promotion Capabilities of the Physiologically Versatile Bacillus aryabhattai Strain AB211. Front Microbiol 2017; 8:411. [PMID: 28377746 PMCID: PMC5359284 DOI: 10.3389/fmicb.2017.00411] [Citation(s) in RCA: 56] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2016] [Accepted: 02/27/2017] [Indexed: 11/24/2022] Open
Abstract
Bacillus aryabhattai AB211 is a plant growth promoting, Gram-positive firmicute, isolated from the rhizosphere of tea (Camellia sinensis), one of the oldest perennial crops and a major non-alcoholic beverage widely consumed all over the world. The whole genome of B. aryabhattai AB211 was sequenced, annotated and evaluated with special focus on genomic elements related to plant microbe interaction. It’s genome sequence reveals the presence of a 5,403,026 bp chromosome. A total of 5226 putative protein-coding sequences, 16 rRNA, 120 tRNA, 8 ncRNAs, 58 non-protein coding genes, and 11 prophage regions were identified. Genome sequence comparisons between strain AB211 and other related environmental strains of B. aryabhattai, identified about 3558 genes conserved among all B. aryabhattai genomes analyzed. Most of the common genes involved in plant growth promotion activities were found to be present within core genes of all the genomes used for comparison, illustrating possible common plant growth promoting traits shared among all the strains of B. aryabhattai. Besides the core genes, some genes were exclusively identified in the genome of strain AB211. Functional annotation of the genes predicted in the strain AB211 revealed the presence of genes responsible for mineral phosphate solubilization, siderophores, acetoin, butanediol, exopolysaccharides, flagella biosynthesis, surface attachment/biofilm formation, and indole acetic acid production, most of which were experimentally verified in the present study. Genome analysis and experimental evidence suggested that AB211 has robust central carbohydrate metabolism implying that this bacterium can efficiently utilize the root exudates and other organic materials as an energy source. Genes for the production of peroxidases, catalases, and superoxide dismutases, that confer resistance to oxidative stresses in plants were identified in AB211 genome. Besides these, genes for heat shock tolerance, cold shock tolerance, glycine-betaine production, and antibiotic/heavy metal resistance that enable bacteria to survive biotic/abiotic stress were also identified. Based on the genome sequence information and experimental evidence as presented in this study, strain AB211 appears to be metabolically diverse and exhibits tremendous potential as a plant growth promoting bacterium.
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Affiliation(s)
| | - Utpal Bakshi
- Structural Biology and Bioinformatics Division, CSIR - Indian Institute of Chemical BiologyKolkata, India; Tea Board of India, Ministry of Commerce and IndustryKolkata, India
| | - Ivy Mallick
- Department of Biochemistry, Bose Institute Kolkata, India
| | | | - Biswajit Bera
- Tea Board of India, Ministry of Commerce and Industry Kolkata, India
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Paul S, Ali MN, Chakraborty S, Mukherjee S. Diversity of bacterial communities inhabiting soil and groundwater of arsenic contaminated areas in West Bengal, India. Microbiology (Reading) 2017. [DOI: 10.1134/s0026261717020151] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
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50
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Keren R, Mayzel B, Lavy A, Polishchuk I, Levy D, Fakra SC, Pokroy B, Ilan M. Sponge-associated bacteria mineralize arsenic and barium on intracellular vesicles. Nat Commun 2017; 8:14393. [PMID: 28233852 PMCID: PMC5333131 DOI: 10.1038/ncomms14393] [Citation(s) in RCA: 37] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2016] [Accepted: 12/21/2016] [Indexed: 01/08/2023] Open
Abstract
Arsenic and barium are ubiquitous environmental toxins that accumulate in higher trophic-level organisms. Whereas metazoans have detoxifying organs to cope with toxic metals, sponges lack organs but harbour a symbiotic microbiome performing various functions. Here we examine the potential roles of microorganisms in arsenic and barium cycles in the sponge Theonella swinhoei, known to accumulate high levels of these metals. We show that a single sponge symbiotic bacterium, Entotheonella sp., constitutes the arsenic- and barium-accumulating entity within the host. These bacteria mineralize both arsenic and barium on intracellular vesicles. Our results indicate that Entotheonella sp. may act as a detoxifying organ for its host. The marine sponge Theonella swinhoei accumulates toxic arsenic and barium. Here the authors show that these toxic elements are actually accumulated and mineralized within vesicles inside bacteria that live within the sponge tissues.
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Affiliation(s)
- Ray Keren
- Department of Zoology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv 69978, Israel
| | - Boaz Mayzel
- Department of Zoology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv 69978, Israel
| | - Adi Lavy
- Department of Zoology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv 69978, Israel
| | - Iryna Polishchuk
- Faculty of Materials Engineering and the Russell Berrie Nanotechnology Institute, Technion, Israel Institute of Technology, Haifa 32000, Israel
| | - Davide Levy
- Faculty of Materials Engineering and the Russell Berrie Nanotechnology Institute, Technion, Israel Institute of Technology, Haifa 32000, Israel
| | - Sirine C Fakra
- Advanced Light Source, Lawrence Berkeley National Lab, Berkeley, California 94720, USA
| | - Boaz Pokroy
- Faculty of Materials Engineering and the Russell Berrie Nanotechnology Institute, Technion, Israel Institute of Technology, Haifa 32000, Israel
| | - Micha Ilan
- Department of Zoology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv 69978, Israel
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