1
|
Oswald SW, Aubrey DP. Modeling starch dynamics from seasonal variations of photosynthesis, growth, and respiration. TREE PHYSIOLOGY 2023:tpad007. [PMID: 36708035 DOI: 10.1093/treephys/tpad007] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/13/2022] [Revised: 11/21/2022] [Indexed: 06/18/2023]
Abstract
Nonstructural carbohydrates (NSCs) buffer differences in plant carbon supply (photosynthesis) and demand (respiration, growth, etc.) but the regulation of their dynamics remains unresolved. Seasonal variations in NSCs are well-documented, but differences in the time-average, amplitude, phase, and other characteristics across ecosystems and functional types lack explanation; furthermore, observed dynamics do not always match expectations. The failure to match observed and expected dynamics has stimulated debate on whether carbon supply or demand drives NSC dynamics. To gain insight into how carbon supply and demand drive seasonal NSC dynamics, we derive a simple model of NSC dynamics based on carbon mass balance and linearizing the NSC demand to determine how supply-driven and demand-driven seasonal NSC dynamics differ. We find that supply-driven and demand-driven dynamics yield distinct timings of seasonal extrema, and supply overrides demand when carbon supply is low in winter (e.g., at high latitudes). Our results also suggest that NSC dynamics often lag changes carbon mass balance. We also predict differences in NSC dynamics across mass, suggesting saplings are more dynamics and respond faster to the environment than mature trees. Our findings suggest substrate-dependent regulation with environmental variation is sufficient to generate complex NSC dynamics.
Collapse
Affiliation(s)
- Scott W Oswald
- Savannah River Ecology Lab, Savannah River Site, Jackson, SC, USA
- Warnell School of Forestry, University of Georgia, Athens, GA, USA
| | - Doug P Aubrey
- Savannah River Ecology Lab, Savannah River Site, Jackson, SC, USA
- Warnell School of Forestry, University of Georgia, Athens, GA, USA
| |
Collapse
|
2
|
Salomón RL, De Roo L, Oleksyn J, Steppe K. Mechanistic drivers of stem respiration: A modelling exercise across species and seasons. PLANT, CELL & ENVIRONMENT 2022; 45:1270-1285. [PMID: 34914118 DOI: 10.1111/pce.14246] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/03/2021] [Revised: 09/22/2021] [Accepted: 12/03/2021] [Indexed: 06/14/2023]
Abstract
Stem respiration (RS ) plays a crucial role in plant carbon budgets. However, its poor understanding limits our ability to model woody tissue and whole-tree respiration. A biophysical model of stem water and carbon fluxes (TReSpire) was calibrated on cedar, maple and oak trees during spring and late summer. For this, stem sap flow, water potential, diameter variation, temperature, CO2 efflux, allometry and biochemistry were monitored. Shoot photosynthesis (PN ) and nonstructural carbohydrates (NSC) were additionally measured to evaluate source-sink relations. The highest RS and stem growth was found in maple and oak during spring, both being seasonally decoupled from PN and [NSC]. Temperature largely affected maintenance respiration (RM ) in the short term, but temperature-normalized RM was highly variable on a seasonal timescale. Overall, most of the respired CO2 radially diffused to the atmosphere (>87%) while the remainder was transported upward with the transpiration stream. The modelling exercise highlights the sink-driven behaviour of RS and the significance of overall metabolic activity on nitrogen (N) allocation patterns and N-normalized respiratory costs to capture RS variability over the long term. These insights should be considered when modelling plant respiration, whose representation is currently biased towards a better understanding of leaf metabolism.
Collapse
Affiliation(s)
- Roberto L Salomón
- Laboratory of Plant Ecology, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium
- Sistemas Naturales e Historia Forestal, Universidad Politécnica de Madrid, Madrid, Spain
| | - Linus De Roo
- Laboratory of Plant Ecology, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium
| | - Jacek Oleksyn
- Polish Academy of Sciences, Institute of Dendrology, Körnik, Poland
| | - Kathy Steppe
- Laboratory of Plant Ecology, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium
| |
Collapse
|
3
|
Moreno-Cadena P, Hoogenboom G, Cock JH, Ramirez-Villegas J, Pypers P, Kreye C, Tariku M, Ezui KS, Becerra Lopez-Lavalle LA, Asseng S. Modeling growth, development and yield of cassava: A review. FIELD CROPS RESEARCH 2021; 267:108140. [PMID: 34140751 PMCID: PMC8146721 DOI: 10.1016/j.fcr.2021.108140] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
Cassava is an important crop in the developing world. The goal of this study was to review published cassava models (18) for their capability to simulate storage root biomass and to categorize them into static and dynamic models. The majority (14) are dynamic and capture within season growth dynamics. Most (13) of the dynamic models consider environmental factors such as temperature, solar radiation, soil water and nutrient restrictions. More than half (10) have been calibrated for a distinct genotype. Only one of the four static models includes environmental variables. While the static regression models are useful to estimate final yield, their application is limited to the locations or varieties used for their development unless recalibrated for distinct conditions. Dynamic models simulate growth process and provide estimates of yield over time with, in most cases, no fixed maturity date. The dynamic models that simulate the detailed development of nodal units tend to be less accurate in determining final yield compared to the simpler dynamic and statistic models. However, they can be more safely applied to novel environmental conditions that can be explored in silico. Deficiencies in the current models are highlighted including suggestions on how they can be improved. None of the current dynamic cassava models adequately simulates the starch content of fresh cassava roots with almost all models based on dry biomass simulations. Further studies are necessary to develop a new module for existing cassava models to simulate cassava quality.
Collapse
Affiliation(s)
- Patricia Moreno-Cadena
- Agricultural and Biological Engineering Department, University of Florida, 101 Frazier Rogers Hall, PO Box 110570, Gainesville, FL, 32611-0570, USA
- Alliance of Bioversity International and International Center for Tropical Agriculture (CIAT), km 17 recta Cali–Palmira, 763537, Cali, Colombia
- International Institute of Tropical Agriculture (IITA), Ibadan, Nigeria
- Corresponding author at: Agricultural and Biological Engineering Department, University of Florida, 101 Frazier Rogers Hall, PO Box 110570, Gainesville, FL, 32611-0570, USA.
| | - Gerrit Hoogenboom
- Agricultural and Biological Engineering Department, University of Florida, 101 Frazier Rogers Hall, PO Box 110570, Gainesville, FL, 32611-0570, USA
- Institute for Sustainable Food Systems, University of Florida, 101 Frazier Rogers Hall, PO Box 110570, Gainesville, FL, 32611-0570, USA
| | - James H. Cock
- Alliance of Bioversity International and International Center for Tropical Agriculture (CIAT), km 17 recta Cali–Palmira, 763537, Cali, Colombia
| | - Julian Ramirez-Villegas
- Alliance of Bioversity International and International Center for Tropical Agriculture (CIAT), km 17 recta Cali–Palmira, 763537, Cali, Colombia
- CGIAR Research Program on Climate Change, Agriculture and Food Security (CCAFS), Cali, Colombia
| | - Pieter Pypers
- International Institute of Tropical Agriculture (IITA), ICIPE Campus, P.O. Box 30772-00100, Nairobi, Kenya
| | - Christine Kreye
- International Institute of Tropical Agriculture (IITA), Ibadan, Nigeria
| | - Meklit Tariku
- International Institute of Tropical Agriculture (IITA), ICIPE Campus, P.O. Box 30772-00100, Nairobi, Kenya
| | - Kodjovi Senam Ezui
- African Plant Nutrition Institute (APNI), ICIPE Campus, Duduville – Kasarani, Thika Road, Nairobi, Kenya
| | - Luis Augusto Becerra Lopez-Lavalle
- Alliance of Bioversity International and International Center for Tropical Agriculture (CIAT), km 17 recta Cali–Palmira, 763537, Cali, Colombia
| | - Senthold Asseng
- Agricultural and Biological Engineering Department, University of Florida, 101 Frazier Rogers Hall, PO Box 110570, Gainesville, FL, 32611-0570, USA
| |
Collapse
|
4
|
Li Y, Yuan L, Cao HB, Tang CD, Wang XY, Tian B, Dou ST, Zhang LQ, Shen J. A dynamic biomass model of emergent aquatic vegetation under different water levels and salinity. Ecol Modell 2021. [DOI: 10.1016/j.ecolmodel.2020.109398] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
|
5
|
Collalti A, Ibrom A, Stockmarr A, Cescatti A, Alkama R, Fernández-Martínez M, Matteucci G, Sitch S, Friedlingstein P, Ciais P, Goll DS, Nabel JEMS, Pongratz J, Arneth A, Haverd V, Prentice IC. Forest production efficiency increases with growth temperature. Nat Commun 2020; 11:5322. [PMID: 33087724 PMCID: PMC7578801 DOI: 10.1038/s41467-020-19187-w] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2020] [Accepted: 09/18/2020] [Indexed: 01/23/2023] Open
Abstract
Forest production efficiency (FPE) metric describes how efficiently the assimilated carbon is partitioned into plants organs (biomass production, BP) or-more generally-for the production of organic matter (net primary production, NPP). We present a global analysis of the relationship of FPE to stand-age and climate, based on a large compilation of data on gross primary production and either BP or NPP. FPE is important for both forest production and atmospheric carbon dioxide uptake. We find that FPE increases with absolute latitude, precipitation and (all else equal) with temperature. Earlier findings-FPE declining with age-are also supported by this analysis. However, the temperature effect is opposite to what would be expected based on the short-term physiological response of respiration rates to temperature, implying a top-down regulation of carbon loss, perhaps reflecting the higher carbon costs of nutrient acquisition in colder climates. Current ecosystem models do not reproduce this phenomenon. They consistently predict lower FPE in warmer climates, and are therefore likely to overestimate carbon losses in a warming climate.
Collapse
Affiliation(s)
- A Collalti
- National Research Council of Italy, Institute for Agriculture and Forestry Systems in the Mediterranean (ISAFOM), 06128, Perugia (PG), Italy
- University of Tuscia, Department of Innovation in Biological, Agro-food and Forest Systems (DIBAF), 01100, Viterbo, Italy
| | - A Ibrom
- Technical University of Denmark (DTU), Department of Environmental Engineering, Lyngby, Denmark.
| | - A Stockmarr
- Technical University of Denmark (DTU), Department of Applied Mathematics and Computer Science, Lyngby, Denmark
| | - A Cescatti
- European Commission, Joint Research Centre, Directorate for Sustainable Resources, Ispra, Italy
| | - R Alkama
- European Commission, Joint Research Centre, Directorate for Sustainable Resources, Ispra, Italy
| | - M Fernández-Martínez
- Research group PLECO (Plants and Ecosystems), Department of Biology, University of Antwerp, 2610, Wilrijk, Belgium
| | - G Matteucci
- National Research Council of Italy, Institute for BioEconomy (IBE), 50019, Sesto Fiorentino, FI, Italy
| | - S Sitch
- College of Life and Environmental Sciences, University of Exeter, Exeter, EX4 4RJ, UK
| | - P Friedlingstein
- College of Engineering, Mathematics and Physical Sciences, University of Exeter, Exeter, EX4 4QF, UK
| | - P Ciais
- Laboratoire des Sciences du Climat et del'Environnement, CEA CNRS UVSQ, Gif-sur-Yvette, 91191, France
| | - D S Goll
- Department of Geography, University of Augsburg, Augsburg, Germany
| | - J E M S Nabel
- Max Planck Institute for Meteorology, Hamburg, Germany
| | - J Pongratz
- Max Planck Institute for Meteorology, Hamburg, Germany
- Ludwig-Maximilians-Universität München, Luisenstr 37, 80333, Munich, Germany
| | - A Arneth
- Karlsruhe Institute of Technology, Institute of Meteorology and Climate Research/Atmospheric Environmental Research, 82467, Garmisch-Partenkirchen, Germany
| | - V Haverd
- CSIRO Oceans and Atmosphere, Canberra, ACT, 2601, Australia
| | - I C Prentice
- Department of Life Sciences, Imperial College London, Silwood Park Campus, London, Ascot SL5 7PY, UK
- Department of Biological Sciences, Macquarie University, North Ryde, NSW, 2109, Australia
- Department of Earth System Science, Tsinghua University, 100084, Beijing, China
| |
Collapse
|
6
|
Keep Calm and Survive: Adaptation Strategies to Energy Crisis in Fruit Trees under Root Hypoxia. PLANTS 2020; 9:plants9091108. [PMID: 32867316 PMCID: PMC7570223 DOI: 10.3390/plants9091108] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/28/2020] [Revised: 08/19/2020] [Accepted: 08/22/2020] [Indexed: 01/05/2023]
Abstract
Plants are permanently facing challenges imposed by the environment which, in the context of the current scenario of global climate change, implies a constant process of adaptation to survive and even, in the case of crops, at least maintain yield. O2 deficiency at the rhizosphere level, i.e., root hypoxia, is one of the factors with the greatest impact at whole-plant level. At cellular level, this O2 deficiency provokes a disturbance in the energy metabolism which has notable consequences on the yield of plant crops. In this sense, although several physiological studies describe processes involved in plant adaptation to root hypoxia in woody fruit trees, with emphasis on the negative impacts on photosynthetic rate, there are very few studies that include -omics strategies for specifically understanding these processes in the roots of such species. Through a de novo assembly approach, a comparative transcriptome study of waterlogged Prunus spp. genotypes contrasting in their tolerance to root hypoxia was revisited in order to gain a deeper insight into the reconfiguration of pivotal pathways involved in energy metabolism. This re-analysis describes the classically altered pathways seen in the roots of woody fruit trees under hypoxia, but also routes that link them to pathways involved with nitrogen assimilation and the maintenance of cytoplasmic pH and glycolytic flow. In addition, the effects of root hypoxia on the transcription of genes related to the mitochondrial oxidative phosphorylation system, responsible for providing adenosine triphosphate (ATP) to the cell, are discussed in terms of their roles in the energy balance, reactive oxygen species (ROS) metabolism and aerenchyma formation. This review compiles key findings that help to explain the trait of tolerance to root hypoxia in woody fruit species, giving special attention to their strategies for managing the energy crisis. Finally, research challenges addressing less-explored topics in recovery and stress memory in woody fruit trees are pointed out.
Collapse
|
7
|
Mincke J, Courtyn J, Vanhove C, Vandenberghe S, Steppe K. Studying in vivo dynamics of xylem-transported 11CO2 using positron emission tomography. TREE PHYSIOLOGY 2020; 40:1058-1070. [PMID: 32333788 DOI: 10.1093/treephys/tpaa048] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/10/2019] [Accepted: 04/20/2020] [Indexed: 05/26/2023]
Abstract
Respired CO2 in woody tissues can build up in the xylem and dissolve in the sap solution to be transported through the plant. From the sap, a fraction of the CO2 can either be radially diffuse to the atmosphere or be assimilated in chloroplasts present in woody tissues. These processes occur simultaneously in stems and branches, making it difficult to study their specific dynamics. Therefore, an 11C-enriched aqueous solution was administered to young branches of Populus tremula L., which were subsequently imaged by positron emission tomography (PET). This approach allows in vivo visualization of the internal movement of CO2 inside branches at high spatial and temporal resolution, and enables direct measurement of the transport speed of xylem-transported CO2 (vCO2). Through compartmental modeling of the dynamic data obtained from the PET images, we (i) quantified vCO2 and (ii) proposed a new method to assess the fate of xylem-transported 11CO2 within the branches. It was found that a fraction of 0.49 min-1 of CO2 present in the xylem was transported upwards. A fraction of 0.38 min-1 diffused radially from the sap to the surrounding parenchyma and apoplastic spaces (CO2,PA) to be assimilated by woody tissue photosynthesis. Another 0.12 min-1 of the xylem-transported CO2 diffused to the atmosphere via efflux. The remaining CO2 (i.e., 0.01 min-1) was stored as CO2,PA, representing the build-up within parenchyma and apoplastic spaces to be assimilated or directed to the atmosphere. Here, we demonstrate the outstanding potential of 11CO2-based plant-PET in combination with compartmental modeling to advance our understanding of internal CO2 movement and the respiratory physiology within woody tissues.
Collapse
Affiliation(s)
- Jens Mincke
- Laboratory of Plant Ecology, Department of Plants and Crops, Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, 9000 Ghent, Belgium
- MEDISIP-INFINITY, Department of Electronics and Information Systems, Faculty of Engineering and Architecture, Ghent University, Corneel Heymanslaan 10, 9000 Ghent, Belgium
| | - Jan Courtyn
- Medical Molecular Imaging and Therapy, Department of Radiology and Nuclear Medicine, Ghent University Hospital, Corneel Heymanslaan 10, 9000 Ghent, Belgium
| | - Christian Vanhove
- MEDISIP-INFINITY, Department of Electronics and Information Systems, Faculty of Engineering and Architecture, Ghent University, Corneel Heymanslaan 10, 9000 Ghent, Belgium
| | - Stefaan Vandenberghe
- MEDISIP-INFINITY, Department of Electronics and Information Systems, Faculty of Engineering and Architecture, Ghent University, Corneel Heymanslaan 10, 9000 Ghent, Belgium
| | - Kathy Steppe
- Laboratory of Plant Ecology, Department of Plants and Crops, Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, 9000 Ghent, Belgium
| |
Collapse
|
8
|
Baslam M, Mitsui T, Hodges M, Priesack E, Herritt MT, Aranjuelo I, Sanz-Sáez Á. Photosynthesis in a Changing Global Climate: Scaling Up and Scaling Down in Crops. FRONTIERS IN PLANT SCIENCE 2020; 11:882. [PMID: 32733499 PMCID: PMC7357547 DOI: 10.3389/fpls.2020.00882] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2019] [Accepted: 05/29/2020] [Indexed: 05/06/2023]
Abstract
Photosynthesis is the major process leading to primary production in the Biosphere. There is a total of 7000bn tons of CO2 in the atmosphere and photosynthesis fixes more than 100bn tons annually. The CO2 assimilated by the photosynthetic apparatus is the basis of crop production and, therefore, of animal and human food. This has led to a renewed interest in photosynthesis as a target to increase plant production and there is now increasing evidence showing that the strategy of improving photosynthetic traits can increase plant yield. However, photosynthesis and the photosynthetic apparatus are both conditioned by environmental variables such as water availability, temperature, [CO2], salinity, and ozone. The "omics" revolution has allowed a better understanding of the genetic mechanisms regulating stress responses including the identification of genes and proteins involved in the regulation, acclimation, and adaptation of processes that impact photosynthesis. The development of novel non-destructive high-throughput phenotyping techniques has been important to monitor crop photosynthetic responses to changing environmental conditions. This wealth of data is being incorporated into new modeling algorithms to predict plant growth and development under specific environmental constraints. This review gives a multi-perspective description of the impact of changing environmental conditions on photosynthetic performance and consequently plant growth by briefly highlighting how major technological advances including omics, high-throughput photosynthetic measurements, metabolic engineering, and whole plant photosynthetic modeling have helped to improve our understanding of how the photosynthetic machinery can be modified by different abiotic stresses and thus impact crop production.
Collapse
Affiliation(s)
- Marouane Baslam
- Laboratory of Biochemistry, Faculty of Agriculture, Niigata University, Niigata, Japan
| | - Toshiaki Mitsui
- Laboratory of Biochemistry, Faculty of Agriculture, Niigata University, Niigata, Japan
- Graduate School of Science and Technology, Niigata University, Niigata, Japan
| | - Michael Hodges
- Institute of Plant Sciences Paris-Saclay (IPS2), CNRS, INRAE, Université Paris-Saclay, Université Evry, Université Paris Diderot, Paris, France
| | - Eckart Priesack
- Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, German Research Center for Environmental Health, Neuherberg, Germany
| | - Matthew T. Herritt
- USDA-ARS Plant Physiology and Genetics Research, US Arid-Land Agricultural Research Center, Maricopa, AZ, United States
| | - Iker Aranjuelo
- Agrobiotechnology Institute (IdAB-CSIC), Consejo Superior de Investigaciones Científicas-Gobierno de Navarra, Mutilva, Spain
| | - Álvaro Sanz-Sáez
- Department of Crop, Soil, and Environmental Sciences, Auburn University, Auburn, AL, United States
| |
Collapse
|
9
|
NOMURA K, TAKADA A, KUNISHIGE H, OZAKI Y, OKAYASU T, YASUTAKE D, KITANO M. Long-term and Continuous Measurement of Canopy Photosynthesis and Growth of Spinach. ACTA ACUST UNITED AC 2020. [DOI: 10.2525/ecb.58.21] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Affiliation(s)
- Koichi NOMURA
- Graduate School of Bioresource and Bioenvironment Sciences, Kyushu University
| | - Akihiro TAKADA
- Graduate School of Bioresource and Bioenvironment Sciences, Kyushu University
| | - Hirosato KUNISHIGE
- Graduate School of Bioresource and Bioenvironment Sciences, Kyushu University
| | | | | | | | | |
Collapse
|
10
|
Collalti A, Tjoelker MG, Hoch G, Mäkelä A, Guidolotti G, Heskel M, Petit G, Ryan MG, Battipaglia G, Matteucci G, Prentice IC. Plant respiration: Controlled by photosynthesis or biomass? GLOBAL CHANGE BIOLOGY 2020; 26:1739-1753. [PMID: 31578796 DOI: 10.1111/gcb.14857] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2018] [Accepted: 10/01/2019] [Indexed: 06/10/2023]
Abstract
Two simplifying hypotheses have been proposed for whole-plant respiration. One links respiration to photosynthesis; the other to biomass. Using a first-principles carbon balance model with a prescribed live woody biomass turnover, applied at a forest research site where multidecadal measurements are available for comparison, we show that if turnover is fast the accumulation of respiring biomass is low and respiration depends primarily on photosynthesis; while if turnover is slow the accumulation of respiring biomass is high and respiration depends primarily on biomass. But the first scenario is inconsistent with evidence for substantial carry-over of fixed carbon between years, while the second implies far too great an increase in respiration during stand development-leading to depleted carbohydrate reserves and an unrealistically high mortality risk. These two mutually incompatible hypotheses are thus both incorrect. Respiration is not linearly related either to photosynthesis or to biomass, but it is more strongly controlled by recent photosynthates (and reserve availability) than by total biomass.
Collapse
Affiliation(s)
- Alessio Collalti
- Institute for Agriculture and Forestry Systems in the Mediterranean, National Research Council of Italy (CNR-ISAFOM), Rende (CS), Italy
- Department of Innovation in Biological, Agro-food and Forest Systems, University of Tuscia, Viterbo, Italy
| | - Mark G Tjoelker
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Australia
| | - Günter Hoch
- Department of Environmental Sciences - Botany, University of Basel, Basel, Switzerland
| | - Annikki Mäkelä
- Institute for Atmospheric and Earth System Research (INAR), Faculty of Science and Faculty of Agriculture and Forestry, University of Helsinki, Helsinki, Finland
| | - Gabriele Guidolotti
- Institute of Research on Terrestrial Ecosystem, National Research Council of Italy (CNR-IRET), Rome, Italy
| | - Mary Heskel
- Department of Biology, Macalester College, Saint Paul, MN, USA
| | - Giai Petit
- Department of Land, Environment, Agriculture and Forestry, University of Padova, Padua, Italy
| | - Michael G Ryan
- Natural Resource Ecology Laboratory, Colorado State University, Fort Collins, CO, USA
- USDA Forest Service, Rocky Mountain Experiment Station, Fort Collins, CO, USA
| | - Giovanna Battipaglia
- Department of Environmental, Biological and Pharmaceutical Sciences and Technologies, University of Campania "L. Vanvitelli", Caserta, Italy
| | - Giorgio Matteucci
- Institute for Agriculture and Forestry Systems in the Mediterranean, National Research Council of Italy (CNR-ISAFOM), Rende (CS), Italy
| | - Iain Colin Prentice
- AXA Chair of Biosphere and Climate Impacts, Department of Life Sciences, Imperial College London, Ascot, UK
- Department of Biological Sciences, Macquarie University, North Ryde, NSW, Australia
- Department of Earth System Science, Ministry of Education Key Laboratory for Earth System Modeling, Tsinghua University, Beijing, China
| |
Collapse
|
11
|
Machacova K, Vainio E, Urban O, Pihlatie M. Seasonal dynamics of stem N 2O exchange follow the physiological activity of boreal trees. Nat Commun 2019; 10:4989. [PMID: 31676776 PMCID: PMC6825224 DOI: 10.1038/s41467-019-12976-y] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2018] [Accepted: 10/03/2019] [Indexed: 11/28/2022] Open
Abstract
The role of trees in the nitrous oxide (N2O) balance of boreal forests has been neglected despite evidence suggesting their substantial contribution. We measured seasonal changes in N2O fluxes from soil and stems of boreal trees in Finland, showing clear seasonality in stem N2O flux following tree physiological activity, particularly processes of CO2 uptake and release. Stem N2O emissions peak during the vegetation season, decrease rapidly in October, and remain low but significant to the annual totals during winter dormancy. Trees growing on dry soils even turn to consumption of N2O from the atmosphere during dormancy, thereby reducing their overall N2O emissions. At an annual scale, pine, spruce and birch are net N2O sources, with spruce being the strongest emitter. Boreal trees thus markedly contribute to the seasonal dynamics of ecosystem N2O exchange, and their species-specific contribution should be included into forest emission inventories. Forest soil is known to be a source of the greenhouse gas N2O, but the impact of what is planted in that soil has long been overlooked. Here Machacova and colleagues quantify seasonal N2O fluxes from common boreal tree species in Finland, finding that all trees are net sources of this gas.
Collapse
Affiliation(s)
- Katerina Machacova
- Global Change Research Institute of the Czech Academy of Sciences, Belidla 4a, CZ-60300, Brno, Czech Republic.
| | - Elisa Vainio
- Environmental Soil Science, Department of Agricultural Sciences, University of Helsinki, P.O.Box 56, FI-00014, Helsinki, Finland.,Institute for Atmospheric and Earth System Research/Forest Sciences, University of Helsinki, P.O.Box 27, FI-00014, Helsinki, Finland
| | - Otmar Urban
- Global Change Research Institute of the Czech Academy of Sciences, Belidla 4a, CZ-60300, Brno, Czech Republic
| | - Mari Pihlatie
- Environmental Soil Science, Department of Agricultural Sciences, University of Helsinki, P.O.Box 56, FI-00014, Helsinki, Finland.,Institute for Atmospheric and Earth System Research/Forest Sciences, University of Helsinki, P.O.Box 27, FI-00014, Helsinki, Finland.,Viikki Plant Science Centre (ViPS), University of Helsinki, P.O.Box 56, FI-00014, Helsinki, Finland
| |
Collapse
|
12
|
Collalti A, Prentice IC. Is NPP proportional to GPP? Waring's hypothesis 20 years on. TREE PHYSIOLOGY 2019; 39:1473-1483. [PMID: 30924876 DOI: 10.1093/treephys/tpz034] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/24/2018] [Revised: 03/05/2019] [Accepted: 03/13/2019] [Indexed: 06/09/2023]
Abstract
Gross primary production (GPP) is partitioned to autotrophic respiration (Ra) and net primary production (NPP), the latter being used to build plant tissues and synthesize non-structural and secondary compounds. Waring et al. (1998; Net primary production of forests: a constant fraction of gross primary production? Tree Physiol 18:129-134) suggested that a NPP:GPP ratio of 0.47 ± 0.04 (SD) is universal across biomes, tree species and stand ages. Representing NPP in models as a fixed fraction of GPP, they argued, would be both simpler and more accurate than trying to simulate Ra mechanistically. This paper reviews progress in understanding the NPP:GPP ratio in forests during the 20 years since the Waring et al. paper. Research has confirmed the existence of pervasive acclimation mechanisms that tend to stabilize the NPP:GPP ratio and indicates that Ra should not be modelled independently of GPP. Nonetheless, studies indicate that the value of this ratio is influenced by environmental factors, stand age and management. The average NPP:GPP ratio in over 200 studies, representing different biomes, species and forest stand ages, was found to be 0.46, consistent with the central value that Waring et al. proposed but with a much larger standard deviation (±0.12) and a total range (0.22-0.79) that is too large to be disregarded.
Collapse
Affiliation(s)
- A Collalti
- National Research Council of Italy-Institute for Agriculture and Forestry Systems in the Mediterranean (CNR-ISAFOM), Rende, CS, Italy
- Foundation Euro-Mediterranean Centre on Climate Change-Impacts on Agriculture, Forests and Ecosystem Services Division (CMCC-IAFES), Viterbo, Italy
| | - I C Prentice
- Department of Life Sciences, AXA Chair of Biosphere and Climate Impacts, Imperial College London, Silwood Park Campus, Buckhurst Road, Ascot, UK
- Department of Biological Sciences, Macquarie University, North Ryde, NSW, Australia
- Ministry of Education Key Laboratory for Earth System Modeling, Department of Earth System Science, Tsinghua University, Beijing, China
| |
Collapse
|
13
|
Kruse J, Rennenberg H, Adams MA. Three physiological parameters capture variation in leaf respiration of Eucalyptus grandis, as elicited by short-term changes in ambient temperature, and differing nitrogen supply. PLANT, CELL & ENVIRONMENT 2018; 41:1369-1382. [PMID: 29424929 DOI: 10.1111/pce.13162] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/03/2017] [Revised: 01/28/2018] [Accepted: 01/30/2018] [Indexed: 06/08/2023]
Abstract
We used instantaneous temperature responses of CO2 -respiration to explore temperature acclimation dynamics for Eucalyptus grandis grown with differing nitrogen supply. A reduction in ambient temperature from 23 to 19 °C reduced light-saturated photosynthesis by 25% but increased respiratory capacity by 30%. Changes in respiratory capacity were not reversed after temperatures were subsequently increased to 27 °C. Temperature sensitivity of respiration measured at prevalent ambient temperature varied little between temperature treatments but was significantly reduced from ~105 kJ mol-1 when supply of N was weak, to ~70 kJ mol-1 when it was strong. Temperature sensitivity of respiration measured across a broader temperature range (20-40 °C) could be fully described by 2 exponent parameters of an Arrhenius-type model (i.e., activation energy of respiration at low reference temperature and a parameter describing the temperature dependence of activation energy). These 2 parameters were strongly correlated, statistically explaining 74% of observed variation. Residual variation was linked to treatment-induced changes in respiration at low reference temperature or respiratory capacity. Leaf contents of starch and soluble sugars suggest that respiratory capacity varies with source-sink imbalances in carbohydrate utilization, which in combination with shifts in carbon-flux mode, serve to maintain homeostasis of respiratory temperature sensitivity at prevalent growth temperature.
Collapse
Affiliation(s)
- Jörg Kruse
- Institute of Forest Sciences, Chair of Tree Physiology, Georges-Köhler-Allee 53/54, 79110, Freiburg, Germany
| | - Heinz Rennenberg
- Institute of Forest Sciences, Chair of Tree Physiology, Georges-Köhler-Allee 53/54, 79110, Freiburg, Germany
| | - Mark A Adams
- Centre for Carbon Water and Food, The University of Sydney, Sydney, NSW, 2006, Australia
- Swiunburne University of Technology, John Street, Hawthorn, 3122, Victoria, Australia
| |
Collapse
|
14
|
Salomón RL, De Schepper V, Valbuena-Carabaña M, Gil L, Steppe K. Daytime depression in temperature-normalised stem CO 2 efflux in young poplar trees is dominated by low turgor pressure rather than by internal transport of respired CO 2. THE NEW PHYTOLOGIST 2018; 217:586-598. [PMID: 28984360 DOI: 10.1111/nph.14831] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2017] [Accepted: 09/01/2017] [Indexed: 06/07/2023]
Abstract
Daytime decreases in temperature-normalised stem CO2 efflux (EA_D ) are commonly ascribed to internal transport of respired CO2 (FT ) or to an attenuated respiratory activity due to lowered turgor pressure. The two are difficult to separate as they are simultaneously driven by sap flow dynamics. To achieve combined gradients in turgor pressure and FT , sap flow rates in poplar trees were manipulated through severe defoliation, severe drought, moderate defoliation and moderate drought. Turgor pressure was mechanistically modelled using measurements of sap flow, stem diameter variation, and soil and stem water potential. A mass balance approach considering internal and external CO2 fluxes was applied to estimate FT . Under well-watered control conditions, both turgor pressure and sap flow, as a proxy of FT , were reliable predictors of EA_D . After tree manipulation, only turgor pressure was a robust predictor of EA_D . Moreover, FT accounted for < 15% of EA_D . Our results suggest that daytime reductions in turgor pressure and associated constrained growth are the main cause of EA_D in young poplar trees. Turgor pressure is determined by both carbohydrate supply and water availability, and should be considered to improve our widely used but inaccurate temperature-based predictions of woody tissue respiration in global models.
Collapse
Affiliation(s)
- Roberto L Salomón
- Laboratory of Plant Ecology, Department of Applied Ecology and Environmental Biology, Faculty of Bioscience Engineering, Ghent University, Coupure links 653, B-9000, Ghent, Belgium
- Forest Genetics and Ecophysiology Research Group, E.T.S. Forestry Engineering, Technical University of Madrid, Ciudad Universitaria s/n, 28040, Madrid, Spain
| | - Veerle De Schepper
- Laboratory of Plant Ecology, Department of Applied Ecology and Environmental Biology, Faculty of Bioscience Engineering, Ghent University, Coupure links 653, B-9000, Ghent, Belgium
| | - María Valbuena-Carabaña
- Forest Genetics and Ecophysiology Research Group, E.T.S. Forestry Engineering, Technical University of Madrid, Ciudad Universitaria s/n, 28040, Madrid, Spain
| | - Luis Gil
- Forest Genetics and Ecophysiology Research Group, E.T.S. Forestry Engineering, Technical University of Madrid, Ciudad Universitaria s/n, 28040, Madrid, Spain
| | - Kathy Steppe
- Laboratory of Plant Ecology, Department of Applied Ecology and Environmental Biology, Faculty of Bioscience Engineering, Ghent University, Coupure links 653, B-9000, Ghent, Belgium
| |
Collapse
|
15
|
Grossowicz M, Marques GM, van Voorn GA. A dynamic energy budget (DEB) model to describe population dynamics of the marine cyanobacterium Prochlorococcus marinus. Ecol Modell 2017. [DOI: 10.1016/j.ecolmodel.2017.06.011] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
|
16
|
O'Leary BM, Lee CP, Atkin OK, Cheng R, Brown TB, Millar AH. Variation in Leaf Respiration Rates at Night Correlates with Carbohydrate and Amino Acid Supply. PLANT PHYSIOLOGY 2017; 174:2261-2273. [PMID: 28615345 PMCID: PMC5543967 DOI: 10.1104/pp.17.00610] [Citation(s) in RCA: 52] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2017] [Accepted: 06/09/2017] [Indexed: 05/17/2023]
Abstract
Plant respiration can theoretically be fueled by and dependent upon an array of central metabolism components; however, which ones are responsible for the quantitative variation found in respiratory rates is unknown. Here, large-scale screens revealed 2-fold variation in nighttime leaf respiration rate (RN) among mature leaves from an Arabidopsis (Arabidopsis thaliana) natural accession collection grown under common favorable conditions. RN variation was mostly maintained in the absence of genetic variation, which emphasized the low heritability of RN and its plasticity toward relatively small environmental differences within the sampling regime. To pursue metabolic explanations for leaf RN variation, parallel metabolite level profiling and assays of total protein and starch were performed. Within an accession, RN correlated strongly with stored carbon substrates, including starch and dicarboxylic acids, as well as sucrose, major amino acids, shikimate, and salicylic acid. Among different accessions, metabolite-RN correlations were maintained with protein, sucrose, and major amino acids but not stored carbon substrates. A complementary screen of the effect of exogenous metabolites and effectors on leaf RN revealed that (1) RN is stimulated by the uncoupler FCCP and high levels of substrates, demonstrating that both adenylate turnover and substrate supply can limit leaf RN, and (2) inorganic nitrogen did not stimulate RN, consistent with limited nighttime nitrogen assimilation. Simultaneous measurements of RN and protein synthesis revealed that these processes were largely uncorrelated in mature leaves. These results indicate that differences in preceding daytime metabolic activities are the major source of variation in mature leaf RN under favorable controlled conditions.
Collapse
Affiliation(s)
- Brendan M O'Leary
- Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Perth, Western Australia 6009, Australia
- Australian Research Council Centre of Excellence in Plant Energy Biology, Australian National University, Canberra, Australian Capital Territory 0200, Australia
| | - Chun Pong Lee
- Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Perth, Western Australia 6009, Australia
| | - Owen K Atkin
- Australian Research Council Centre of Excellence in Plant Energy Biology, Australian National University, Canberra, Australian Capital Territory 0200, Australia
| | - Riyan Cheng
- Australian Research Council Centre of Excellence in Plant Energy Biology, Australian National University, Canberra, Australian Capital Territory 0200, Australia
| | - Tim B Brown
- Australian Research Council Centre of Excellence in Plant Energy Biology, Australian National University, Canberra, Australian Capital Territory 0200, Australia
| | - A Harvey Millar
- Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Perth, Western Australia 6009, Australia
| |
Collapse
|
17
|
Atkin OK, Bahar NHA, Bloomfield KJ, Griffin KL, Heskel MA, Huntingford C, de la Torre AM, Turnbull MH. Leaf Respiration in Terrestrial Biosphere Models. ADVANCES IN PHOTOSYNTHESIS AND RESPIRATION 2017. [DOI: 10.1007/978-3-319-68703-2_6] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
|
18
|
Ostler U, Schleip I, Lattanzi FA, Schnyder H. Carbon dynamics in aboveground biomass of co-dominant plant species in a temperate grassland ecosystem: same or different? THE NEW PHYTOLOGIST 2016; 210:471-484. [PMID: 26694950 DOI: 10.1111/nph.13800] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/20/2015] [Accepted: 11/11/2015] [Indexed: 06/05/2023]
Abstract
Understanding the role of individual organisms in whole-ecosystem carbon (C) fluxes is probably the biggest current challenge in C cycle research. Thus, it is unknown whether different plant community members share the same or different residence times in metabolic (τmetab ) and nonmetabolic (i.e. structural) (τnonmetab ) C pools of aboveground biomass and the fraction of fixed C allocated to aboveground nonmetabolic biomass (Anonmetab ). We assessed τmetab , τnonmetab and Anonmetab of co-dominant species from different functional groups (two bunchgrasses, a stoloniferous legume and a rosette dicot) in a temperate grassland community. Continuous, 14-16-d-long (13) C-labeling experiments were performed in September 2006, May 2007 and September 2007. A two-pool compartmental system, with a well-mixed metabolic and a nonmixed nonmetabolic pool, was the simplest biologically meaningful model that fitted the (13) C tracer kinetics in the whole-shoot biomass of all species. In all experimental periods, the species had similar τmetab (5-8 d), whereas τnonmetab ranged from 20 to 58 d (except for one outlier) and Anonmetab from 7 to 45%. Variations in τnonmetab and Anonmetab were not systematically associated with species or experimental periods, but exhibited relationships with leaf life span, particularly in the grasses. Similar pool kinetics of species suggested similar kinetics at the community level.
Collapse
Affiliation(s)
- Ulrike Ostler
- Lehrstuhl für Grünlandlehre, Department für Pflanzenwissenschaften, Technische Universität München, Alte Akademie 12, Freising-Weihenstephan, D-85354, Germany
| | - Inga Schleip
- Lehrstuhl für Grünlandlehre, Department für Pflanzenwissenschaften, Technische Universität München, Alte Akademie 12, Freising-Weihenstephan, D-85354, Germany
| | - Fernando A Lattanzi
- Lehrstuhl für Grünlandlehre, Department für Pflanzenwissenschaften, Technische Universität München, Alte Akademie 12, Freising-Weihenstephan, D-85354, Germany
| | - Hans Schnyder
- Lehrstuhl für Grünlandlehre, Department für Pflanzenwissenschaften, Technische Universität München, Alte Akademie 12, Freising-Weihenstephan, D-85354, Germany
| |
Collapse
|
19
|
|
20
|
Galeriu D, Melintescu A. Carbon-14 dynamics in rice: an extension of the ORYZA2000 model. RADIATION AND ENVIRONMENTAL BIOPHYSICS 2014; 53:187-202. [PMID: 24352528 DOI: 10.1007/s00411-013-0503-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2013] [Accepted: 11/23/2013] [Indexed: 06/03/2023]
Abstract
Carbon-14 ((14)C) is a radionuclide of major interest in nuclear power production. The Fukushima accident changed the public attitude on the use of nuclear energy all over the world. In terms of nuclear safety, the need of quality-assured radiological models was emphasized by many international organizations, and for models used by decision-makers (i.e. regulatory environmental models and radiological models), a moderate conservatism, transparency, relative simplicity and user friendliness are required. Because the interaction between crops and the environment is complex and regulated by many feedback mechanisms, however, these requirements are difficult to accomplish. The present study makes a step forward regarding the development of a robust model dealing with food contamination after a short-term accidental emission and considers a single crop species, rice (Oryza sativa), one of the most widely used rice species. Old and more recent experimental data regarding the carbon dynamics in rice plants are reviewed, and a well-established crop growth model, ORYZA2000, is used and adapted in order to assess the dynamics of (14)C in rice after a short-term exposure to (14)CO(2). Here, the model is used to investigate the role of the genotype, management and weather on the concentration of radiocarbon at harvest.
Collapse
Affiliation(s)
- D Galeriu
- Life and Environmental Physics Department, "Horia Hulubei" National Institute for Physics and Nuclear Engineering, 30 Reactorului St., POB MG-6, 077125, Bucharest-Magurele, Romania
| | | |
Collapse
|
21
|
Dillaway DN, Kruger EL. Trends in seedling growth and carbon-use efficiency vary among broadleaf tree species along a latitudinal transect in eastern North America. GLOBAL CHANGE BIOLOGY 2014; 20:908-922. [PMID: 24130066 DOI: 10.1111/gcb.12427] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/16/2012] [Accepted: 09/14/2013] [Indexed: 06/02/2023]
Abstract
Factors constraining the geographic ranges of broadleaf tree species in eastern North America were examined in common gardens along a ~1500 km latitudinal transect travers in grange boundaries of four target species: trembling aspen (Populus tremuloides) and paper birch (Betula papyrifera) to the north vs. eastern cottonwood (Populus deltoides) and sweet gum (Liquidambar styraciflua) to the south. In 2006 and 2007, carbon-use efficiency (CUE), the proportion of assimilated carbon retained in biomass, was estimated for seedlings of the four species as the quotient of relative growth rate (RGR) and photosynthesis per unit tree mass (Atree ). In aspen and birch, CUE and RGR declined significantly with increasing growth temperature, which spanned 9 °C across gardens and years. The 37% (relative) CUE decrease from coolest to warmest garden correlated with increases in leaf nighttime respiration (Rleaf ) and the ratio of Rleaf to leaf photosynthesis (R%A ). For cottonwood and sweet gum, however, similar increases in Rleaf and R%A accompanied modest CUE declines, implying that processes other than Rleaf were responsible for species differences in CUE's temperature response. Our findings illustrate marked taxonomic variation, at least among young trees, in the thermal sensitivity of CUE, and point to potentially negative consequences of climate warming for the carbon balance, competitive ability, and persistence of two foundation species in northern temperate and boreal forests.
Collapse
Affiliation(s)
- Dylan N Dillaway
- Department of Forest and Wildlife Ecology, University of Wisconsin-Madison, Madison, WI 53706, USA; Unity College, Unity, ME 04988, USA
| | | |
Collapse
|
22
|
Sweetlove LJ, Williams TCR, Cheung CYM, Ratcliffe RG. Modelling metabolic CO₂ evolution--a fresh perspective on respiration. PLANT, CELL & ENVIRONMENT 2013; 36:1631-1640. [PMID: 23531106 DOI: 10.1111/pce.12105] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/13/2012] [Revised: 03/06/2013] [Accepted: 03/19/2013] [Indexed: 05/28/2023]
Abstract
Respiration is a major contributor to net exchange of CO₂ between plants and the atmosphere and thus an important aspect of the vegetation component of global climate change models. However, a mechanistic model of respiration is lacking, and so here we explore the potential for flux balance analysis (FBA) to predict cellular CO₂ evolution rates. Metabolic flux analysis reveals that respiration is not always the dominant source of CO₂, and that metabolic processes such as the oxidative pentose phosphate pathway (OPPP) and lipid synthesis can be quantitatively important. Moreover, there is considerable variation in the metabolic origin of evolved CO₂ between tissues, species and conditions. Comparison of FBA-predicted CO₂ evolution profiles with those determined from flux measurements reveals that FBA is able to predict the metabolic origin of evolved CO₂ in different tissues/species and under different conditions. However, FBA is poor at predicting flux through certain metabolic processes such as the OPPP and we identify the way in which maintenance costs are accounted for as a major area of improvement for future FBA studies. We conclude that FBA, in its standard form, can be used to predict CO₂ evolution in a range of plant tissues and in response to environment.
Collapse
Affiliation(s)
- Lee J Sweetlove
- Department of Plant Sciences, University of Oxford, South Parks Road, Oxford OX1 3RB, UK.
| | | | | | | |
Collapse
|
23
|
Mulder C, Boit A, Mori S, Vonk JA, Dyer SD, Faggiano L, Geisen S, González AL, Kaspari M, Lavorel S, Marquet PA, Rossberg AG, Sterner RW, Voigt W, Wall DH. Distributional (In)Congruence of Biodiversity–Ecosystem Functioning. ADV ECOL RES 2012. [DOI: 10.1016/b978-0-12-396992-7.00001-0] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
|