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For: Combes MC, Hueber Y, Dereeper A, Rialle S, Herrera JC, Lashermes P. Regulatory divergence between parental alleles determines gene expression patterns in hybrids. Genome Biol Evol 2015;7:1110-21. [PMID: 25819221 PMCID: PMC4419803 DOI: 10.1093/gbe/evv057] [Citation(s) in RCA: 53] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]  Open
Number Cited by Other Article(s)
1
Shi TL, Jia KH, Bao YT, Nie S, Tian XC, Yan XM, Chen ZY, Li ZC, Zhao SW, Ma HY, Zhao Y, Li X, Zhang RG, Guo J, Zhao W, El-Kassaby YA, Müller N, Van de Peer Y, Wang XR, Street NR, Porth I, An X, Mao JF. High-quality genome assembly enables prediction of allele-specific gene expression in hybrid poplar. PLANT PHYSIOLOGY 2024;195:652-670. [PMID: 38412470 PMCID: PMC11060683 DOI: 10.1093/plphys/kiae078] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2023] [Revised: 01/08/2024] [Accepted: 01/09/2024] [Indexed: 02/29/2024]
2
Yoo MJ, Koh J, Boatwright JL, Soltis DE, Soltis PS, Barbazuk WB, Chen S. Investigation of regulatory divergence between homoeologs in the recently formed allopolyploids, Tragopogon mirus and T. miscellus (Asteraceae). THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2024;117:1191-1205. [PMID: 37997015 DOI: 10.1111/tpj.16553] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/10/2023] [Revised: 10/02/2023] [Accepted: 11/06/2023] [Indexed: 11/25/2023]
3
Liu Z, Chen B, Zou Z, Li D, Zhu J, Yu J, Xiao W, Yang H. Non-Additive and Asymmetric Allelic Expression of p38 mapk in Hybrid Tilapia (Oreochromis niloticus ♀ × O. aureus ♂). Animals (Basel) 2024;14:266. [PMID: 38254435 PMCID: PMC10812652 DOI: 10.3390/ani14020266] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2023] [Revised: 12/22/2023] [Accepted: 01/12/2024] [Indexed: 01/24/2024]  Open
4
Duan T, Sicard A, Glémin S, Lascoux M. Separating phases of allopolyploid evolution with resynthesized and natural Capsella bursa-pastoris. eLife 2024;12:RP88398. [PMID: 38189348 PMCID: PMC10945474 DOI: 10.7554/elife.88398] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2024]  Open
5
Ivamoto-Suzuki ST, Celedón JM, Yuen MMS, Kitzberger CSG, Silva Domingues D, Bohlmann J, Protasio Pereira LF. Functional Characterization of ent-Copalyl Diphosphate Synthase and Kaurene Synthase Genes from Coffea arabica L. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2023;71:15863-15873. [PMID: 37816128 DOI: 10.1021/acs.jafc.2c09087] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/12/2023]
6
Gao Z, Yang X, Chen J, Rausher MD, Shi T. Expression inheritance and constraints on cis- and trans-regulatory mutations underlying lotus color variation. PLANT PHYSIOLOGY 2023;191:1662-1683. [PMID: 36417237 PMCID: PMC10022630 DOI: 10.1093/plphys/kiac522] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2022] [Accepted: 11/17/2022] [Indexed: 06/16/2023]
7
The role of non-additive gene action on gene expression variation in plant domestication. EvoDevo 2023;14:3. [PMID: 36765382 PMCID: PMC9912502 DOI: 10.1186/s13227-022-00206-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2022] [Accepted: 12/05/2022] [Indexed: 02/12/2023]  Open
8
Combes MC, Joët T, Stavrinides AK, Lashermes P. New cup out of old coffee: contribution of parental gene expression legacy to phenotypic novelty in coffee beans of the allopolyploid Coffea arabica L. ANNALS OF BOTANY 2023;131:157-170. [PMID: 35325016 PMCID: PMC9904342 DOI: 10.1093/aob/mcac041] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/02/2021] [Accepted: 03/21/2022] [Indexed: 05/25/2023]
9
Ereful NC, Lalusin AG, Laurena AC. Assessing Loss of Regulatory Divergence, Genome-Transcriptome Incongruence, and Preferential Expression Switching in Abaca × Banana Backcrosses. Genes (Basel) 2022;13:1396. [PMID: 36011307 PMCID: PMC9407414 DOI: 10.3390/genes13081396] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2022] [Revised: 08/02/2022] [Accepted: 08/03/2022] [Indexed: 11/16/2022]  Open
10
Okubo K, Kaneko K. Heterosis of fitness and phenotypic variance in the evolution of a diploid gene regulatory network. PNAS NEXUS 2022;1:pgac097. [PMID: 36741431 PMCID: PMC9896930 DOI: 10.1093/pnasnexus/pgac097] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/20/2021] [Accepted: 06/24/2022] [Indexed: 02/07/2023]
11
Wan J, Wang Q, Zhao J, Zhang X, Guo Z, Hu D, Meng S, Lin Y, Qiu X, Mu L, Ding D, Tang J. Gene expression variation explains maize seed germination heterosis. BMC PLANT BIOLOGY 2022;22:301. [PMID: 35718761 PMCID: PMC9208091 DOI: 10.1186/s12870-022-03690-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/11/2021] [Accepted: 06/07/2022] [Indexed: 06/15/2023]
12
Gu H, Wang L, Lv X, Yang W, Chen Y, Li K, Zhang J, Jia Y, Ning Z, Qu L. RNA-Seq Analysis Reveals Expression Regulatory Divergence of W-Linked Genes between Two Contrasting Chicken Breeds. Animals (Basel) 2022;12:ani12091218. [PMID: 35565645 PMCID: PMC9103786 DOI: 10.3390/ani12091218] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2022] [Revised: 04/12/2022] [Accepted: 04/14/2022] [Indexed: 11/16/2022]  Open
13
Quan C, Chen G, Li S, Jia Z, Yu P, Tu J, Shen J, Yi B, Fu T, Dai C, Ma C. Transcriptome shock in interspecific F1 allotriploid hybrids between Brassica species. JOURNAL OF EXPERIMENTAL BOTANY 2022;73:2336-2353. [PMID: 35139197 DOI: 10.1093/jxb/erac047] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2021] [Accepted: 02/03/2022] [Indexed: 06/14/2023]
14
Carlson CH, Choi Y, Chan AP, Town CD, Smart LB. Nonadditive gene expression is correlated with nonadditive phenotypic expression in interspecific triploid hybrids of willow (Salix spp.). G3 (BETHESDA, MD.) 2022;12:6472355. [PMID: 35100357 PMCID: PMC9210313 DOI: 10.1093/g3journal/jkab436] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/13/2021] [Accepted: 12/10/2021] [Indexed: 12/13/2022]
15
Blasio F, Prieto P, Pradillo M, Naranjo T. Genomic and Meiotic Changes Accompanying Polyploidization. PLANTS (BASEL, SWITZERLAND) 2022;11:125. [PMID: 35009128 PMCID: PMC8747196 DOI: 10.3390/plants11010125] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2021] [Revised: 12/24/2021] [Accepted: 12/29/2021] [Indexed: 05/04/2023]
16
Ma X, Zhang Z, Li G, Gou X, Bian Y, Zhao Y, Wang B, Lang M, Wang T, Xie K, Liu X, Liu B, Gong L. Spatial and Temporal Transcriptomic Heredity and Asymmetry in an Artificially Constructed Allotetraploid Wheat (AADD). FRONTIERS IN PLANT SCIENCE 2022;13:887133. [PMID: 35651770 PMCID: PMC9150853 DOI: 10.3389/fpls.2022.887133] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2022] [Accepted: 04/08/2022] [Indexed: 05/15/2023]
17
Qi X, Gu H, Qu L. Transcriptome-Wide Analyses Identify Dominant as the Predominantly Non-Conservative Alternative Splicing Inheritance Patterns in F1 Chickens. Front Genet 2021;12:774240. [PMID: 34925458 PMCID: PMC8678468 DOI: 10.3389/fgene.2021.774240] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2021] [Accepted: 11/05/2021] [Indexed: 11/25/2022]  Open
18
Unraveling regulatory divergence, heterotic malleability, and allelic imbalance switching in rice due to drought stress. Sci Rep 2021;11:13489. [PMID: 34188147 PMCID: PMC8241847 DOI: 10.1038/s41598-021-92938-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2021] [Accepted: 06/17/2021] [Indexed: 01/10/2023]  Open
19
Florez-Rueda AM, Fiscalini F, Roth M, Grossniklaus U, Städler T. Endosperm and Seed Transcriptomes Reveal Possible Roles for Small RNA Pathways in Wild Tomato Hybrid Seed Failure. Genome Biol Evol 2021;13:6278300. [PMID: 34009298 PMCID: PMC8358227 DOI: 10.1093/gbe/evab107] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/10/2021] [Indexed: 01/10/2023]  Open
20
Gao Z, Li H, Yang X, Yang P, Chen J, Shi T. Biased allelic expression in tissues of F1 hybrids between tropical and temperate lotus (Nelumbo nuicfera). PLANT MOLECULAR BIOLOGY 2021;106:207-220. [PMID: 33738679 DOI: 10.1007/s11103-021-01138-8] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2020] [Accepted: 03/05/2021] [Indexed: 06/12/2023]
21
Chen D, Yan PC, Guo YP. Imprints of independent allopolyploid formations on patterns of gene expression in two sibling yarrow species (Achillea, Asteraceae). BMC Genomics 2021;22:264. [PMID: 33849436 PMCID: PMC8045213 DOI: 10.1186/s12864-021-07566-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2020] [Accepted: 03/30/2021] [Indexed: 11/10/2022]  Open
22
Bird KA, Niederhuth CE, Ou S, Gehan M, Pires JC, Xiong Z, VanBuren R, Edger PP. Replaying the evolutionary tape to investigate subgenome dominance in allopolyploid Brassica napus. THE NEW PHYTOLOGIST 2021;230:354-371. [PMID: 33280122 PMCID: PMC7986222 DOI: 10.1111/nph.17137] [Citation(s) in RCA: 45] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2020] [Accepted: 11/30/2020] [Indexed: 05/03/2023]
23
Kerwin RE, Sweigart AL. Rampant Misexpression in a Mimulus (Monkeyflower) Introgression Line Caused by Hybrid Sterility, Not Regulatory Divergence. Mol Biol Evol 2021;37:2084-2098. [PMID: 32196085 PMCID: PMC7306685 DOI: 10.1093/molbev/msaa071] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]  Open
24
Comparative Transcriptomic Analysis of Gene Expression Inheritance Patterns Associated with Cabbage Head Heterosis. PLANTS 2021;10:plants10020275. [PMID: 33572601 PMCID: PMC7912167 DOI: 10.3390/plants10020275] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/23/2020] [Revised: 01/27/2021] [Accepted: 01/27/2021] [Indexed: 11/16/2022]
25
Mugal CF, Wang M, Backström N, Wheatcroft D, Ålund M, Sémon M, McFarlane SE, Dutoit L, Qvarnström A, Ellegren H. Tissue-specific patterns of regulatory changes underlying gene expression differences among Ficedula flycatchers and their naturally occurring F1 hybrids. Genome Res 2020;30:1727-1739. [PMID: 33144405 PMCID: PMC7706733 DOI: 10.1101/gr.254508.119] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2019] [Accepted: 10/28/2020] [Indexed: 12/27/2022]
26
Díaz-Valenzuela E, Sawers RH, Cibrián-Jaramillo A. Cis- and Trans-Regulatory Variations in the Domestication of the Chili Pepper Fruit. Mol Biol Evol 2020;37:1593-1603. [PMID: 32031611 PMCID: PMC7253206 DOI: 10.1093/molbev/msaa027] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]  Open
27
Hovhannisyan H, Saus E, Ksiezopolska E, Hinks Roberts AJ, Louis EJ, Gabaldón T. Integrative Omics Analysis Reveals a Limited Transcriptional Shock After Yeast Interspecies Hybridization. Front Genet 2020;11:404. [PMID: 32457798 PMCID: PMC7221068 DOI: 10.3389/fgene.2020.00404] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2020] [Accepted: 03/30/2020] [Indexed: 12/30/2022]  Open
28
Glombik M, Bačovský V, Hobza R, Kopecký D. Competition of Parental Genomes in Plant Hybrids. FRONTIERS IN PLANT SCIENCE 2020;11:200. [PMID: 32158461 PMCID: PMC7052263 DOI: 10.3389/fpls.2020.00200] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2019] [Accepted: 02/11/2020] [Indexed: 05/17/2023]
29
Baldauf JA, Vedder L, Schoof H, Hochholdinger F. Robust non-syntenic gene expression patterns in diverse maize hybrids during root development. JOURNAL OF EXPERIMENTAL BOTANY 2020;71:865-876. [PMID: 31638701 DOI: 10.1093/jxb/erz452] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2019] [Accepted: 09/30/2019] [Indexed: 06/10/2023]
30
Bartoš O, Röslein J, Kotusz J, Paces J, Pekárik L, Petrtýl M, Halačka K, Štefková Kašparová E, Mendel J, Boroń A, Juchno D, Leska A, Jablonska O, Benes V, Šídová M, Janko K. The Legacy of Sexual Ancestors in Phenotypic Variability, Gene Expression, and Homoeolog Regulation of Asexual Hybrids and Polyploids. Mol Biol Evol 2020;36:1902-1920. [PMID: 31077330 PMCID: PMC6735777 DOI: 10.1093/molbev/msz114] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]  Open
31
Wang Q, Jia Y, Wang Y, Jiang Z, Zhou X, Zhang Z, Nie C, Li J, Yang N, Qu L. Evolution of cis- and trans-regulatory divergence in the chicken genome between two contrasting breeds analyzed using three tissue types at one-day-old. BMC Genomics 2019;20:933. [PMID: 31805870 PMCID: PMC6896592 DOI: 10.1186/s12864-019-6342-5] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2019] [Accepted: 11/27/2019] [Indexed: 11/10/2022]  Open
32
Bao Y, Hu G, Grover CE, Conover J, Yuan D, Wendel JF. Unraveling cis and trans regulatory evolution during cotton domestication. Nat Commun 2019;10:5399. [PMID: 31776348 PMCID: PMC6881400 DOI: 10.1038/s41467-019-13386-w] [Citation(s) in RCA: 44] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2019] [Accepted: 11/06/2019] [Indexed: 12/12/2022]  Open
33
Zhang M, Tang YW, Qi J, Liu XK, Yan DF, Zhong NS, Tao NQ, Gao JY, Wang YG, Song ZP, Yang J, Zhang WJ. Effects of parental genetic divergence on gene expression patterns in interspecific hybrids of Camellia. BMC Genomics 2019;20:828. [PMID: 31703692 PMCID: PMC6842218 DOI: 10.1186/s12864-019-6222-z] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2019] [Accepted: 10/24/2019] [Indexed: 12/11/2022]  Open
34
Sriswasdi S, Takashima M, Manabe RI, Ohkuma M, Iwasaki W. Genome and transcriptome evolve separately in recently hybridized Trichosporon fungi. Commun Biol 2019;2:263. [PMID: 31341962 PMCID: PMC6642101 DOI: 10.1038/s42003-019-0515-2] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2019] [Accepted: 06/25/2019] [Indexed: 11/28/2022]  Open
35
Griffiths AG, Moraga R, Tausen M, Gupta V, Bilton TP, Campbell MA, Ashby R, Nagy I, Khan A, Larking A, Anderson C, Franzmayr B, Hancock K, Scott A, Ellison NW, Cox MP, Asp T, Mailund T, Schierup MH, Andersen SU. Breaking Free: The Genomics of Allopolyploidy-Facilitated Niche Expansion in White Clover. THE PLANT CELL 2019;31:1466-1487. [PMID: 31023841 PMCID: PMC6635854 DOI: 10.1105/tpc.18.00606] [Citation(s) in RCA: 53] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2018] [Revised: 03/15/2019] [Accepted: 04/22/2019] [Indexed: 05/18/2023]
36
Kryvokhyzha D, Milesi P, Duan T, Orsucci M, Wright SI, Glémin S, Lascoux M. Towards the new normal: Transcriptomic convergence and genomic legacy of the two subgenomes of an allopolyploid weed (Capsella bursa-pastoris). PLoS Genet 2019;15:e1008131. [PMID: 31083657 PMCID: PMC6532933 DOI: 10.1371/journal.pgen.1008131] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2018] [Revised: 05/23/2019] [Accepted: 04/11/2019] [Indexed: 02/07/2023]  Open
37
Inheritance patterns of the transcriptome in hybrid chickens and their parents revealed by expression analysis. Sci Rep 2019;9:5750. [PMID: 30962479 PMCID: PMC6453914 DOI: 10.1038/s41598-019-42019-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2018] [Accepted: 03/22/2019] [Indexed: 12/11/2022]  Open
38
Ng WL, Wu W, Zou P, Zhou R. Comparative transcriptomics sheds light on differential adaptation and species diversification between two Melastoma species and their F1 hybrid. AOB PLANTS 2019;11:plz019. [PMID: 31037213 PMCID: PMC6481908 DOI: 10.1093/aobpla/plz019] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/16/2018] [Accepted: 03/27/2019] [Indexed: 06/09/2023]
39
Boel C, Curnoe D, Hamada Y. Craniofacial Shape and Nonmetric Trait Variation in Hybrids of the Japanese Macaque (Macaca fuscata) and the Taiwanese Macaque (Macaca cyclopis). INT J PRIMATOL 2019. [DOI: 10.1007/s10764-019-00081-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
40
Matos I, Machado MP, Schartl M, Coelho MM. Allele-specific expression variation at different ploidy levels in Squalius alburnoides. Sci Rep 2019;9:3688. [PMID: 30842567 PMCID: PMC6403402 DOI: 10.1038/s41598-019-40210-8] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2018] [Accepted: 02/07/2019] [Indexed: 11/09/2022]  Open
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Hu G, Wendel JF. Cis-trans controls and regulatory novelty accompanying allopolyploidization. THE NEW PHYTOLOGIST 2019;221:1691-1700. [PMID: 30290011 DOI: 10.1111/nph.15515] [Citation(s) in RCA: 42] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2018] [Accepted: 09/30/2018] [Indexed: 05/20/2023]
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Albert E, Duboscq R, Latreille M, Santoni S, Beukers M, Bouchet JP, Bitton F, Gricourt J, Poncet C, Gautier V, Jiménez-Gómez JM, Rigaill G, Causse M. Allele-specific expression and genetic determinants of transcriptomic variations in response to mild water deficit in tomato. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2018;96:635-650. [PMID: 30079488 DOI: 10.1111/tpj.14057] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2018] [Revised: 07/31/2018] [Accepted: 08/02/2018] [Indexed: 06/08/2023]
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Bian Y, Yang C, Ou X, Zhang Z, Wang B, Ma W, Gong L, Zhang H, Liu B. Meiotic chromosome stability of a newly formed allohexaploid wheat is facilitated by selection under abiotic stress as a spandrel. THE NEW PHYTOLOGIST 2018;220:262-277. [PMID: 29916206 DOI: 10.1111/nph.15267] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2018] [Accepted: 05/11/2018] [Indexed: 05/25/2023]
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Zhang M, Liu XK, Fan W, Yan DF, Zhong NS, Gao JY, Zhang WJ. Transcriptome analysis reveals hybridization-induced genome shock in an interspecific F1 hybrid from Camellia. Genome 2018;61:477-485. [PMID: 29718690 DOI: 10.1139/gen-2017-0105] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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Transcriptional Response to Lactic Acid Stress in the Hybrid Yeast Zygosaccharomyces parabailii. Appl Environ Microbiol 2018;84:AEM.02294-17. [PMID: 29269498 PMCID: PMC5812937 DOI: 10.1128/aem.02294-17] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2017] [Accepted: 12/12/2017] [Indexed: 12/29/2022]  Open
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Bar-Zvi D, Lupo O, Levy AA, Barkai N. Hybrid vigor: The best of both parents, or a genomic clash? ACTA ACUST UNITED AC 2017. [DOI: 10.1016/j.coisb.2017.08.004] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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Sun Y, Wu Y, Yang C, Sun S, Lin X, Liu L, Xu C, Wendel JF, Gong L, Liu B. Segmental allotetraploidy generates extensive homoeologous expression rewiring and phenotypic diversity at the population level in rice. Mol Ecol 2017;26:5451-5466. [PMID: 28802080 DOI: 10.1111/mec.14297] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2017] [Revised: 06/04/2017] [Accepted: 07/24/2017] [Indexed: 02/03/2023]
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Carlson CH, Choi Y, Chan AP, Serapiglia MJ, Town CD, Smart LB. Dominance and Sexual Dimorphism Pervade the Salix purpurea L. Transcriptome. Genome Biol Evol 2017;9:2377-2394. [PMID: 28957462 PMCID: PMC5622329 DOI: 10.1093/gbe/evx174] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/31/2017] [Indexed: 12/24/2022]  Open
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Hu X, Wang H, Diao X, Liu Z, Li K, Wu Y, Liang Q, Wang H, Huang C. Transcriptome profiling and comparison of maize ear heterosis during the spikelet and floret differentiation stages. BMC Genomics 2016;17:959. [PMID: 27875998 PMCID: PMC5120533 DOI: 10.1186/s12864-016-3296-8] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2016] [Accepted: 11/15/2016] [Indexed: 12/20/2022]  Open
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Inter-genomic DNA Exchanges and Homeologous Gene Silencing Shaped the Nascent Allopolyploid Coffee Genome (Coffea arabica L.). G3-GENES GENOMES GENETICS 2016;6:2937-48. [PMID: 27440920 PMCID: PMC5015950 DOI: 10.1534/g3.116.030858] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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