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Sharma A, Dheer P, Rautela I, Thapliyal P, Thapliyal P, Bajpai AB, Sharma MD. A review on strategies for crop improvement against drought stress through molecular insights. 3 Biotech 2024; 14:173. [PMID: 38846012 PMCID: PMC11150236 DOI: 10.1007/s13205-024-04020-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2023] [Accepted: 05/27/2024] [Indexed: 06/09/2024] Open
Abstract
The demand for food goods is rising along with the world population growth, which is directly related to the yield of agricultural crops around the world. However, a number of environmental factors, including floods, salinity, moisture, and drought, have a detrimental effect on agricultural production around the world. Among all of these stresses, drought stress (DS) poses a constant threat to agricultural crops and is a significant impediment to global agricultural productivity. Its potency and severity are expected to increase in the future years. A variety of techniques have been used to generate drought-resistant plants in order to get around this restriction. Different crop plants exhibit specific traits that contribute to drought resistance (DR), such as early flowering, drought escape (DE), and leaf traits. We are highlighting numerous methods that can be used to overcome the effects of DS in this review. Agronomic methods, transgenic methods, the use of sufficient fertilizers, and molecular methods such as clustered regularly interspaced short palindromic repeats (CRISPRs)-associated nuclease 9 (Cas9), virus-induced gene silencing (VIGS), quantitative trait loci (QTL) mapping, microRNA (miRNA) technology, and OMICS-based approaches make up the majority of these techniques. CRISPR technology has rapidly become an increasingly popular choice among researchers exploring natural tolerance to abiotic stresses although, only a few plants have been produced so far using this technique. In order to address the difficulties imposed by DS, new plants utilizing the CRISPR technology must be developed.
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Affiliation(s)
- Aditi Sharma
- Department of Biotechnology, Graphic Era Deemed to be University, Dehradun, Uttarakhand 248001 India
| | - Pallavi Dheer
- Department of Biotechnology, School of Basic and Applied Sciences, Shri Guru Ram Rai University, Patel Nagar, Dehradun, Uttarakhand 248001 India
| | - Indra Rautela
- Department of Biotechnology, School of Applied and Life Sciences (SALS), Uttaranchal University, Dehradun, Uttarakhand 248001 India
| | - Preeti Thapliyal
- Department of Biotechnology, School of Applied and Life Sciences (SALS), Uttaranchal University, Dehradun, Uttarakhand 248001 India
| | - Priya Thapliyal
- Department of Biochemistry, H.N.B. Garhwal (A Central) University, Srinagar, Uttarakhand 246174 India
| | - Atal Bihari Bajpai
- Department of Botany, D.B.S. (PG) College, Dehradun, Uttarakhand 248001 India
| | - Manish Dev Sharma
- Department of Biotechnology, School of Basic and Applied Sciences, Shri Guru Ram Rai University, Patel Nagar, Dehradun, Uttarakhand 248001 India
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Fitzner M, Schreiner M, Baldermann S. Between eustress and distress: UVB induced changes in carotenoid accumulation in halophytic Salicornia europaea. JOURNAL OF PLANT PHYSIOLOGY 2023; 291:154124. [PMID: 37944241 DOI: 10.1016/j.jplph.2023.154124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/05/2023] [Revised: 10/13/2023] [Accepted: 10/27/2023] [Indexed: 11/12/2023]
Abstract
Halophytes are potential future crops with a valuable nutritional profile. Produced in indoor farming, they are considered to contribute to sustainable and resilient food systems. Indoor farms operate using artificial light. In this context narrowband and low dose UVB radiation can be used to increase plant secondary metabolites, such as carotenoids, and provide an improved nutritional profile for a human diet. UVB radiation can cause eustress or distress in the plant depending on the lighting situation. The aim of this study was to identify the doses of UVB that lead to either eustress or distress and to analyze these responses in Salicornia europaea. Therefore, S. europaea plants were exposed to different UVB radiation levels, low, medium and high, and analyzed for reactive oxygen species (ROS), plant hormones, amino acids, and photosynthetic pigments. High UVB treatment was found to affect phenotype and growth, and the metabolite profile was affected in a UVB dose-dependent manner. Specifically, medium UVB radiation resulted in an increase in carotenoids, whereas high UVB resulted in a decrease. We also observed an altered oxidative stress status and increased SA and decreased ABA contents in response to UVB treatment. This was supported by the results of menadione treatment that induces oxidative stress in plants, which also indicated an altered oxidative stress status in combination with altered carotenoid content. Thus, we show that a moderate dose of UVB can increase the carotenoid content of S. europaea. Furthermore, the UVB stress-dependent response led to a better understanding of carotenoid accumulation upon UVB exposure, which can be used to improve lighting systems and in turn the nutritional profile of future crops in indoor farming.
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Affiliation(s)
- Maria Fitzner
- Department Plant Quality and Food Security, Leibniz Institute of Vegetable and Ornamental Crops (IGZ), Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany; Institute of Nutritional Science, Food Chemistry, University of Potsdam, Arthur-Scheunert-Allee 114-116, 14558, Nuthetal, Germany; Food4Future (F4F), C/o Leibniz Institute of Vegetable and Ornamental Crops (IGZ), Department Plant Quality and Food Security, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany.
| | - Monika Schreiner
- Department Plant Quality and Food Security, Leibniz Institute of Vegetable and Ornamental Crops (IGZ), Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany; Food4Future (F4F), C/o Leibniz Institute of Vegetable and Ornamental Crops (IGZ), Department Plant Quality and Food Security, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany
| | - Susanne Baldermann
- Department Plant Quality and Food Security, Leibniz Institute of Vegetable and Ornamental Crops (IGZ), Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany; Faculty of Life Science: Food, Nutrition and Health, Food Metabolome, University of Bayreuth, Fritz-Hornschuch-Straße 13, 95326, Kulmbach, Germany; Food4Future (F4F), C/o Leibniz Institute of Vegetable and Ornamental Crops (IGZ), Department Plant Quality and Food Security, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany
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Wen T, Li JH, Wang Q, Gao YY, Hao GF, Song BA. Thermal imaging: The digital eye facilitates high-throughput phenotyping traits of plant growth and stress responses. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 899:165626. [PMID: 37481085 DOI: 10.1016/j.scitotenv.2023.165626] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/04/2023] [Revised: 07/13/2023] [Accepted: 07/16/2023] [Indexed: 07/24/2023]
Abstract
Plant phenotyping is important for plants to cope with environmental changes and ensure plant health. Imaging techniques are perceived as the most critical and reliable tools for studying plant phenotypes. Thermal imaging has opened up new opportunities for nondestructive imaging of plant phenotyping. However, a comprehensive summary of thermal imaging in plant phenotyping is still lacking. Here we discuss the progress and future prospects of thermal imaging for assessing plant growth and stress responses. First, we classify thermal imaging into ground-based and aerial platforms based on their adaptability to different experimental environments (including laboratory, greenhouse, and field). It is convenient to collect phenotypic information of different dimensions. Second, in order to enhance the efficiency of thermal image processing, automatic algorithms based on deep learning are employed instead of traditional manual methods, greatly reducing the time cost of experiments. Considering its ease of implementation, handling and instant response, thermal imaging has been widely used in research on environmental stress, crop yield, and seed vigor. We have found that thermal imaging can detect thermal energy dissipation caused by living organisms (e.g., pests, viruses, bacteria, fungi, and oomycetes), enabling early disease diagnosis. It also recognizes changes leaf surface temperatures resulting from reduced transpiration rates caused by nutrient deficiency, drought, salinity, or freezing. Furthermore, thermal imaging predicts crop yield under different water states and forecasts the viability of dormant seeds after water absorption by monitoring temperature changes in the seeds. This work will assist biologists and agronomists in studying plant phenotypes and serve a guide for breeders to develop high-yielding, stress-tolerant, and superior crops.
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Affiliation(s)
- Ting Wen
- National Key Laboratory of Green Pesticide, State Key Laboratory Breeding Base of Green Pesticide and Agricultural Bioengineering, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Center for Research and Development of Fine Chemicals, Guizhou University, Guiyang 550025, PR China
| | - Jian-Hong Li
- National Key Laboratory of Green Pesticide, State Key Laboratory Breeding Base of Green Pesticide and Agricultural Bioengineering, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Center for Research and Development of Fine Chemicals, Guizhou University, Guiyang 550025, PR China
| | - Qi Wang
- State Key Laboratory of Public Big Data, Guizhou University, Guiyang 550025, PR China.
| | - Yang-Yang Gao
- National Key Laboratory of Green Pesticide, State Key Laboratory Breeding Base of Green Pesticide and Agricultural Bioengineering, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Center for Research and Development of Fine Chemicals, Guizhou University, Guiyang 550025, PR China.
| | - Ge-Fei Hao
- National Key Laboratory of Green Pesticide, State Key Laboratory Breeding Base of Green Pesticide and Agricultural Bioengineering, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Center for Research and Development of Fine Chemicals, Guizhou University, Guiyang 550025, PR China; Key Laboratory of Pesticide & Chemical Biology, Ministry of Education, College of Chemistry, Central China Normal University, Wuhan 430079, China.
| | - Bao-An Song
- National Key Laboratory of Green Pesticide, State Key Laboratory Breeding Base of Green Pesticide and Agricultural Bioengineering, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Center for Research and Development of Fine Chemicals, Guizhou University, Guiyang 550025, PR China
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Rosado BHP, Roland H, Moraes YCS. On the biological concept of stress. Trends Ecol Evol 2023; 38:905-906. [PMID: 37365101 DOI: 10.1016/j.tree.2023.06.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2023] [Revised: 06/01/2023] [Accepted: 06/02/2023] [Indexed: 06/28/2023]
Affiliation(s)
- Bruno H P Rosado
- Department of Ecology, IBRAG, State University of Rio de Janeiro (UERJ). R. São Francisco Xavier, 524, PHLC, Sala 220, Maracanã, Rio de Janeiro, RJ, CEP: 20550-900, Brazil.
| | - Helena Roland
- Department of Ecology, IBRAG, State University of Rio de Janeiro (UERJ). R. São Francisco Xavier, 524, PHLC, Sala 220, Maracanã, Rio de Janeiro, RJ, CEP: 20550-900, Brazil; National School of Tropical Botany, Research Institute of the Botanical Garden of Rio de Janeiro, R. Pacheco Leão, 2040 Horto, Rio de Janeiro, RJ, Brazil
| | - Yan C S Moraes
- Department of Ecology, IBRAG, State University of Rio de Janeiro (UERJ). R. São Francisco Xavier, 524, PHLC, Sala 220, Maracanã, Rio de Janeiro, RJ, CEP: 20550-900, Brazil; Programa de Pós-graduação em Ecologia e Evolução (PPGEE), IBRAG, State University of Rio de Janeiro (UERJ), R. São Francisco Xavier 524, PHLC, Maracanã, Rio de Janeiro, RJ, CEP: 20550-900, Brazil
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Galvis DA, Jaimes-Suárez YY, Rojas Molina J, Ruiz R, León-Moreno CE, Carvalho FEL. Unveiling Cacao Rootstock-Genotypes with Potential Use in the Mitigation of Cadmium Bioaccumulation. PLANTS (BASEL, SWITZERLAND) 2023; 12:2941. [PMID: 37631153 PMCID: PMC10458809 DOI: 10.3390/plants12162941] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2023] [Revised: 07/26/2023] [Accepted: 08/02/2023] [Indexed: 08/27/2023]
Abstract
The accumulation of high cadmium (Cd) levels in cacao beans (Theobroma cacao) generate several commercial and health issues. We hypothesized that cacao phenotypic and genotypic diversity could provide new insights to decrease Cd accumulation in cacao beans. Nine cacao rootstock genotypes were evaluated for up to 90 days under 0, 6, and 12 (mg·kg-1) of CdCl2 exposure and Cd content and plant growth dynamics were measured in leaves, stems, and roots. Data revealed that all cacao genotypes studied here were highly tolerant to Cd, since they presented tolerance index ≥ 60%. In shoots, EET61 and PA46 presented the higher (~270 mg·kg DW-1) and lower (~20 mg·kg DW-1) Cd concentration, respectively. Accordingly, only the EET61 showed an increase in the shoot cadmium translocation factor over the 90 days of exposure. However, when analyzing cadmium allocation to different organs based on total plant dry mass production, none of the genotypes maintained high Cd compartmentalization into roots, since P46, which was the genotype with the highest allocation of Cd to the roots, presented only 20% of total cadmium per plant in this plant organ and 80% allocated into the shoots, under Cd 12 (mg·kg-1) and after 90 days of exposure. Thus, genotypic/phenotypic variability in cacao rootstocks may provide valuable strategies for maximizing the reduction in Cd content in shoots. In this sense, IMC67 and PA46 were the ones that stood out in the present study.
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Affiliation(s)
- Donald A. Galvis
- Centro de Investigación La Suiza, Corporación Colombiana de Investigación Agropecuaria (Agrosavia), Rionegro 250047, Colombia
- Facultad de Ciencias Básicas, Universidad de Córdoba, Montería 230002, Colombia;
| | - Yeirme Y. Jaimes-Suárez
- Centro de Investigación La Suiza, Corporación Colombiana de Investigación Agropecuaria (Agrosavia), Rionegro 250047, Colombia
| | - Jairo Rojas Molina
- Centro de Investigación La Suiza, Corporación Colombiana de Investigación Agropecuaria (Agrosavia), Rionegro 250047, Colombia
| | - Rosalba Ruiz
- Facultad de Ciencias Básicas, Universidad de Córdoba, Montería 230002, Colombia;
| | - Clara E. León-Moreno
- Centro de Investigación La Suiza, Corporación Colombiana de Investigación Agropecuaria (Agrosavia), Rionegro 250047, Colombia
| | - Fabricio Eulalio Leite Carvalho
- Centro de Investigación La Suiza, Corporación Colombiana de Investigación Agropecuaria (Agrosavia), Rionegro 250047, Colombia
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Xu D, Tang Q, Xu P, Schäffner AR, Leister D, Kleine T. Response of the organellar and nuclear (post)transcriptomes of Arabidopsis to drought. FRONTIERS IN PLANT SCIENCE 2023; 14:1220928. [PMID: 37528975 PMCID: PMC10387551 DOI: 10.3389/fpls.2023.1220928] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/11/2023] [Accepted: 06/28/2023] [Indexed: 08/03/2023]
Abstract
Plants have evolved sophisticated mechanisms to cope with drought, which involve massive changes in nuclear gene expression. However, little is known about the roles of post-transcriptional processing of nuclear or organellar transcripts and how meaningful these changes are. To address these issues, we used RNA-sequencing after ribosomal RNA depletion to monitor (post)transcriptional changes during different times of drought exposure in Arabidopsis Col-0. Concerning the changes detected in the organellar transcriptomes, chloroplast transcript levels were globally reduced, editing efficiency dropped, but splicing was not affected. Mitochondrial transcripts were slightly elevated, while editing and splicing were unchanged. Conversely, alternative splicing (AS) affected nearly 1,500 genes (9% of expressed nuclear genes). Of these, 42% were regulated solely at the level of AS, representing transcripts that would have gone unnoticed in a microarray-based approach. Moreover, we identified 927 isoform switching events. We provide a table of the most interesting candidates, and as proof of principle, increased drought tolerance of the carbonic anhydrase ca1 and ca2 mutants is shown. In addition, altering the relative contributions of the spliced isoforms could increase drought resistance. For example, our data suggest that the accumulation of a nonfunctional FLM (FLOWERING LOCUS M) isoform and not the ratio of FLM-ß and -δ isoforms may be responsible for the phenotype of early flowering under long-day drought conditions. In sum, our data show that AS enhances proteome diversity to counteract drought stress and represent a valuable resource that will facilitate the development of new strategies to improve plant performance under drought.
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Affiliation(s)
- Duorong Xu
- Plant Molecular Biology, Faculty of Biology, Ludwig-Maximilians-University Munich, Planegg-Martinsried, Germany
| | - Qian Tang
- Plant Molecular Biology, Faculty of Biology, Ludwig-Maximilians-University Munich, Planegg-Martinsried, Germany
| | - Ping Xu
- Department of Environmental Sciences, Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, München, Germany
| | - Anton R. Schäffner
- Department of Environmental Sciences, Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, München, Germany
| | - Dario Leister
- Plant Molecular Biology, Faculty of Biology, Ludwig-Maximilians-University Munich, Planegg-Martinsried, Germany
| | - Tatjana Kleine
- Plant Molecular Biology, Faculty of Biology, Ludwig-Maximilians-University Munich, Planegg-Martinsried, Germany
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Xu N, Sun Y, Wang Y, Cui Y, Jiang Y, Zhang C. Hormesis effects in tomato plant growth and photosynthesis due to acephate exposure based on physiology and transcriptomic analysis. PEST MANAGEMENT SCIENCE 2023; 79:2029-2039. [PMID: 36693821 DOI: 10.1002/ps.7381] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2022] [Revised: 01/16/2023] [Accepted: 01/25/2023] [Indexed: 05/03/2023]
Abstract
BACKGROUND Hormesis is a common phenomenon in toxicology described as low-dose stimulation due to a toxin which causes inhibition at a high dose. Pesticide hormesis in plants has attracted considerable research interest in recent years; however, the specific mechanism has not yet been clarified. Acephate is an organophosphorus insecticide that is used worldwide. Here, hormesis in tomato (Solanum lycopersicum L.) plant growth and photosynthesis after acephate exposure is confirmed, as stimulation occurred at low stress levels, whereas inhibition occurred after exposure to high concentrations. RESULTS We found that low acephate concentration (5-fold lower than recommended application dosage) could enhance chlorophyll biosynthesis and stimulate photosynthesis effects, and thus improve S. lycopersicum growth. A high level of acephate (5-fold higher than recommended application dosage) stress inhibited chlorophyll accumulation, decreased photosystem II efficiency and blocked antioxidant reactions in leaves, increasing reactive oxygen species levels and damaging plant growth. Transcriptomic analysis and quantitative real-time PCR results revealed that the photosynthesis - antenna proteins pathway played a crucial role in the hormesis effect, and that LHCB7 as well as LHCP from the pathway were the most sensitive to acephate hormesis. CONCLUSION Our results showed that acephate could induce hormesis in tomato plant growth and photosynthesis, and that photosystem II and the photosynthesis - antenna proteins pathway played important roles in hormesis. These results provide novel insights into the scientific and safe application of chemical pesticides, and new guidance for investigation into utilizing pesticide hormesis in agriculture. © 2023 Society of Chemical Industry.
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Affiliation(s)
- Nuo Xu
- Key Laboratory of Agri-Food Safety of Anhui Province, Anhui Agricultural University, Hefei, China
- College of Resources and Environment, Anhui Agricultural University, Hefei, China
| | - Yang Sun
- Anhui Province Key Laboratory of Crop Integrated Pest Management, School of Plant Protection, Anhui Agricultural University, Hefei, China
| | - Yuru Wang
- Key Laboratory of Agri-Food Safety of Anhui Province, Anhui Agricultural University, Hefei, China
- College of Resources and Environment, Anhui Agricultural University, Hefei, China
| | - Yidi Cui
- Key Laboratory of Agri-Food Safety of Anhui Province, Anhui Agricultural University, Hefei, China
- College of Resources and Environment, Anhui Agricultural University, Hefei, China
| | - Yuanjin Jiang
- Key Laboratory of Agri-Food Safety of Anhui Province, Anhui Agricultural University, Hefei, China
- College of Resources and Environment, Anhui Agricultural University, Hefei, China
| | - Chao Zhang
- Key Laboratory of Agri-Food Safety of Anhui Province, Anhui Agricultural University, Hefei, China
- College of Resources and Environment, Anhui Agricultural University, Hefei, China
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Ghaffar A, Hussain N, Ajaj R, Shahin SM, Bano H, Javed M, Khalid A, Yasmin M, Shah KH, Zaheer M, Iqbal M, Zafar ZU, Athar HUR. Photosynthetic activity and metabolic profiling of bread wheat cultivars contrasting in drought tolerance. FRONTIERS IN PLANT SCIENCE 2023; 14:1123080. [PMID: 36844078 PMCID: PMC9945586 DOI: 10.3389/fpls.2023.1123080] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/13/2022] [Accepted: 01/18/2023] [Indexed: 06/18/2023]
Abstract
The rapid increase in population growth under changing climatic conditions causes drought stress, threatening world food security. The identification of physiological and biochemical traits acting as yield-limiting factors in diverse germplasm is pre-requisite for genetic improvement under water-deficit conditions. The major aim of the present study was the identification of drought-tolerant wheat cultivars with a novel source of drought tolerance from local wheat germplasm. The study was conducted to screen 40 local wheat cultivars against drought stress at different growth stages. Barani-83, Blue Silver, Pak-81, and Pasban-90 containing shoot and root fresh weight >60% of control and shoot and root dry weight >80% and 70% of control, respectively, P (% of control >80 in shoot and >88 in root), K+ (>85% of control), and quantum yield of PSII > 90% of control under polyethylene glycol (PEG)-induced drought stress at seedling stage can be considered as tolerant, while more reduction in these parameters make FSD-08, Lasani-08, Punjab-96, and Sahar-06 as drought-sensitive cultivars. FSD-08 and Lasani-08 could not maintain growth and yield due to protoplasmic dehydration, decreased turgidity, cell enlargement, and cell division due to drought treatment at adult growth stage. Stability of leaf chlorophyll content (<20% decrease) reflects photosynthetic efficiency of tolerant cultivars, while ~30 µmol/g fwt concentration of proline, 100%-200% increase in free amino acids, and ~50% increase in accumulation of soluble sugars were associated with maintaining leaf water status by osmotic adjustment. Raw OJIP chlorophyll fluorescence curves revealed a decrease in fluorescence at O, J, I, and P steps in sensitive genotypes FSD-08 and Lasani-08, showing greater damage to photosynthetic machinery and greater decrease in JIP test parameters, performance index (PIABS), maximum quantum yield (Fv/Fm) associated with increase in Vj, absorption (ABS/RC), and dissipation per reaction center (DIo/RC) while a decrease in electron transport per reaction center (ETo/RC). During the present study, differential modifications in morpho-physiological, biochemical, and photosynthetic attributes that alleviate the damaging effects of drought stress in locally grown wheat cultivars were analyzed. Selected tolerant cultivars could be explored in various breeding programs to produce new wheat genotypes with adaptive traits to withstand water stress.
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Affiliation(s)
- Abdul Ghaffar
- Institute of Botany, Bahauddin Zakariya University, Multan, Pakistan
| | - Nadeem Hussain
- Institute of Botany, Bahauddin Zakariya University, Multan, Pakistan
| | - Rahaf Ajaj
- Department of Environmental and Public Health, College of Health Sciences, Abu Dhabi University, Abu Dhabi, United Arab Emirates
| | - Suzan Marwan Shahin
- College of Arts and Science, Umm Al Quwain University, Umm Al Quwain, United Arab Emirates
| | - Hussan Bano
- Department of Botany, The Women University, Multan, Pakistan
| | - Muhammad Javed
- Institute of Botany, Bahauddin Zakariya University, Multan, Pakistan
- Department of Botany, University of Education, Lahore, Pakistan
| | - Ayesha Khalid
- Institute of Botany, Bahauddin Zakariya University, Multan, Pakistan
| | - Memoona Yasmin
- Institute of Botany, Bahauddin Zakariya University, Multan, Pakistan
| | | | - Muhammad Zaheer
- Institute of Botany, Bahauddin Zakariya University, Multan, Pakistan
| | - Muhammad Iqbal
- Institute of Botany, Bahauddin Zakariya University, Multan, Pakistan
- Department of Botany, University of Okara, Okara, Pakistan
| | - Zafar Ullah Zafar
- Institute of Botany, Bahauddin Zakariya University, Multan, Pakistan
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Gouesbet G. Deciphering Macromolecular Interactions Involved in Abiotic Stress Signaling: A Review of Bioinformatics Analysis. Methods Mol Biol 2023; 2642:257-294. [PMID: 36944884 DOI: 10.1007/978-1-0716-3044-0_15] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/23/2023]
Abstract
Plant functioning and responses to abiotic stresses largely involve regulations at the transcriptomic level via complex interactions of signal molecules, signaling cascades, and regulators. Nevertheless, all the signaling networks involved in responses to abiotic stresses have not yet been fully established. The in-depth analysis of transcriptomes in stressed plants has become a relevant state-of-the-art methodology to study these regulations and signaling pathways that allow plants to cope with or attempt to survive abiotic stresses. The plant science and molecular biology community has developed databases about genes, proteins, protein-protein interactions, protein-DNA interactions and ontologies, which are valuable sources of knowledge for deciphering such regulatory and signaling networks. The use of these data and the development of bioinformatics tools help to make sense of transcriptomic data in specific contexts, such as that of abiotic stress signaling, using functional biological approaches. The aim of this chapter is to present and assess some of the essential online tools and resources that will allow novices in bioinformatics to decipher transcriptomic data in order to characterize the cellular processes and functions involved in abiotic stress responses and signaling. The analysis of case studies further describes how these tools can be used to conceive signaling networks on the basis of transcriptomic data. In these case studies, particular attention was paid to the characterization of abiotic stress responses and signaling related to chemical and xenobiotic stressors.
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Affiliation(s)
- Gwenola Gouesbet
- University of Rennes, CNRS, ECOBIO [(Ecosystèmes, Biodiversité, Evolution)] - UMR 6553, Rennes, France.
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Berger K, Machwitz M, Kycko M, Kefauver SC, Van Wittenberghe S, Gerhards M, Verrelst J, Atzberger C, van der Tol C, Damm A, Rascher U, Herrmann I, Paz VS, Fahrner S, Pieruschka R, Prikaziuk E, Buchaillot ML, Halabuk A, Celesti M, Koren G, Gormus ET, Rossini M, Foerster M, Siegmann B, Abdelbaki A, Tagliabue G, Hank T, Darvishzadeh R, Aasen H, Garcia M, Pôças I, Bandopadhyay S, Sulis M, Tomelleri E, Rozenstein O, Filchev L, Stancile G, Schlerf M. Multi-sensor spectral synergies for crop stress detection and monitoring in the optical domain: A review. REMOTE SENSING OF ENVIRONMENT 2022; 280:113198. [PMID: 36090616 PMCID: PMC7613382 DOI: 10.1016/j.rse.2022.113198] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
Remote detection and monitoring of the vegetation responses to stress became relevant for sustainable agriculture. Ongoing developments in optical remote sensing technologies have provided tools to increase our understanding of stress-related physiological processes. Therefore, this study aimed to provide an overview of the main spectral technologies and retrieval approaches for detecting crop stress in agriculture. Firstly, we present integrated views on: i) biotic and abiotic stress factors, the phases of stress, and respective plant responses, and ii) the affected traits, appropriate spectral domains and corresponding methods for measuring traits remotely. Secondly, representative results of a systematic literature analysis are highlighted, identifying the current status and possible future trends in stress detection and monitoring. Distinct plant responses occurring under shortterm, medium-term or severe chronic stress exposure can be captured with remote sensing due to specific light interaction processes, such as absorption and scattering manifested in the reflected radiance, i.e. visible (VIS), near infrared (NIR), shortwave infrared, and emitted radiance, i.e. solar-induced fluorescence and thermal infrared (TIR). From the analysis of 96 research papers, the following trends can be observed: increasing usage of satellite and unmanned aerial vehicle data in parallel with a shift in methods from simpler parametric approaches towards more advanced physically-based and hybrid models. Most study designs were largely driven by sensor availability and practical economic reasons, leading to the common usage of VIS-NIR-TIR sensor combinations. The majority of reviewed studies compared stress proxies calculated from single-source sensor domains rather than using data in a synergistic way. We identified new ways forward as guidance for improved synergistic usage of spectral domains for stress detection: (1) combined acquisition of data from multiple sensors for analysing multiple stress responses simultaneously (holistic view); (2) simultaneous retrieval of plant traits combining multi-domain radiative transfer models and machine learning methods; (3) assimilation of estimated plant traits from distinct spectral domains into integrated crop growth models. As a future outlook, we recommend combining multiple remote sensing data streams into crop model assimilation schemes to build up Digital Twins of agroecosystems, which may provide the most efficient way to detect the diversity of environmental and biotic stresses and thus enable respective management decisions.
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Affiliation(s)
- Katja Berger
- Image Processing Laboratory (IPL), University of Valencia, C/Catedrático José Beltrán 2, Paterna 46980, Valencia, Spain
- Department of Geography, Ludwig-Maximilians-Universität München (LMU), Luisenstr. 37, 80333 Munich, Germany
| | - Miriam Machwitz
- Remote Sensing and Natural Resources Modelling Group, Environmental Research and Innovation Department, Luxembourg Institute of Science and Technology (LIST), 41, rue du Brill, L-4422 Belvaux, Luxembourg
| | - Marlena Kycko
- Department of Geoinformatics Cartography and Remote Sensing, Chair of Geomatics and Information Systems, Faculty of Geography and Regional Studies, University of Warsaw, 00-927 Warszawa, Poland
| | - Shawn C. Kefauver
- Integrative Crop Ecophysiology Group, Plant Physiology Section, Faculty of Biology, University of Barcelona, 08028 Barcelona, Spain
- AGROTECNIO (Center for Research in Agrotechnology), Av. Rovira Roure 191, 25198 Lleida, Spain
| | - Shari Van Wittenberghe
- Image Processing Laboratory (IPL), University of Valencia, C/Catedrático José Beltrán 2, Paterna 46980, Valencia, Spain
| | - Max Gerhards
- Earth Observation and Climate Processes, Trier University, 54286 Trier, Germany
| | - Jochem Verrelst
- Image Processing Laboratory (IPL), University of Valencia, C/Catedrático José Beltrán 2, Paterna 46980, Valencia, Spain
| | - Clement Atzberger
- Institute of Geomatics, University of Natural Resources and Life Sciences, Vienna (BOKU), Peter Jordan Str. 82, 1190 Vienna, Austria
| | - Christiaan van der Tol
- Faculty Geo-Information Science and Earth Observation, ITC, University of Twente, the Netherlands
| | - Alexander Damm
- Department of Geography, University of Zurich, Winterthurerstrasse 190, 8057 Zurich, Switzerland
- Eawag, Swiss Federal Institute of Aquatic Science and Technology, Überlandstrasse 133, 8600 Dübendorf, Switzerland
| | - Uwe Rascher
- Institute of Bio- and Geosciences, Plant Sciences (IBG-2), Forschungszentrum Jülich, 52428 Jülich, Germany
| | - Ittai Herrmann
- The Plant Sensing Laboratory, The Robert H. Smith Institute for Plant Sciences and Genetics in Agriculture, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, P.O. Box 12, Rehovot 7610001, Israel
| | - Veronica Sobejano Paz
- Department of Environmental Engineering, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark
| | - Sven Fahrner
- Institute of Bio- and Geosciences, Plant Sciences (IBG-2), Forschungszentrum Jülich, 52428 Jülich, Germany
| | - Roland Pieruschka
- Institute of Bio- and Geosciences, Plant Sciences (IBG-2), Forschungszentrum Jülich, 52428 Jülich, Germany
| | - Egor Prikaziuk
- Faculty Geo-Information Science and Earth Observation, ITC, University of Twente, the Netherlands
| | - Ma. Luisa Buchaillot
- Integrative Crop Ecophysiology Group, Plant Physiology Section, Faculty of Biology, University of Barcelona, 08028 Barcelona, Spain
- AGROTECNIO (Center for Research in Agrotechnology), Av. Rovira Roure 191, 25198 Lleida, Spain
| | - Andrej Halabuk
- Institute of Landscape Ecology, Slovak Academy of Sciences, 814 99 Bratislava, Slovakia
| | - Marco Celesti
- HE Space for ESA - European Space Agency, European Space Research and Technology Centre (ESA-ESTEC), Keplerlaan 1, 2201, AZ Noordwijk, the Netherlands
| | - Gerbrand Koren
- Copernicus Institute of Sustainable Development, Utrecht University, Utrecht, the Netherlands
| | - Esra Tunc Gormus
- Department of Geomatics Engineering, Karadeniz Technical University, 61080 Trabzon, Turkey
| | - Micol Rossini
- Remote Sensing of Environmental Dynamics Laboratory (LTDA), University of Milano - Bicocca, Piazza della Scienza 1, 20126 Milano, Italy
| | - Michael Foerster
- Geoinformation in Environmental Planning Lab, Technische Universität Berlin, 10623 Berlin, Germany
| | - Bastian Siegmann
- Institute of Bio- and Geosciences, Plant Sciences (IBG-2), Forschungszentrum Jülich, 52428 Jülich, Germany
| | - Asmaa Abdelbaki
- Earth Observation and Climate Processes, Trier University, 54286 Trier, Germany
| | - Giulia Tagliabue
- Remote Sensing of Environmental Dynamics Laboratory (LTDA), University of Milano - Bicocca, Piazza della Scienza 1, 20126 Milano, Italy
| | - Tobias Hank
- Department of Geography, Ludwig-Maximilians-Universität München (LMU), Luisenstr. 37, 80333 Munich, Germany
| | - Roshanak Darvishzadeh
- Faculty Geo-Information Science and Earth Observation, ITC, University of Twente, the Netherlands
| | - Helge Aasen
- Earth Observation and Analysis of Agroecosystems Team, Division Agroecology and Environment, Agroscope, Zurich, Switzerland
- Institute of Agricultural Science, ETH Zürich, Zurich, Switzerland
| | - Monica Garcia
- Research Centre for the Management of Agricultural and Environmental Risks (CEIGRAM), ETSIAAB, Universidad Politécnica de Madrid, 28040, Spain
| | - Isabel Pôças
- ForestWISE - Collaborative Laboratory for Integrated Forest & Fire Management, Quinta de Prados, Campus da UTAD, 5001-801 Vila Real, Portugal
| | | | - Mauro Sulis
- Remote Sensing and Natural Resources Modelling Group, Environmental Research and Innovation Department, Luxembourg Institute of Science and Technology (LIST), 41, rue du Brill, L-4422 Belvaux, Luxembourg
| | - Enrico Tomelleri
- Faculty of Science and Technology, Free University of Bozen/Bolzano, Italy
| | - Offer Rozenstein
- Institute of Soil, Water and Environmental Sciences, Agricultural Research Organization—Volcani Institute, HaMaccabim Road 68, P.O. Box 15159, Rishon LeZion 7528809, Israel
| | - Lachezar Filchev
- Space Research and Technology Institute, Bulgarian Academy of Sciences (SRTI-BAS), Bulgaria
| | - Gheorghe Stancile
- National Meteorological Administration, Building A, Soseaua Bucuresti-Ploiesti 97, 013686 Bucuresti, Romania
| | - Martin Schlerf
- Remote Sensing and Natural Resources Modelling Group, Environmental Research and Innovation Department, Luxembourg Institute of Science and Technology (LIST), 41, rue du Brill, L-4422 Belvaux, Luxembourg
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Suresh BV, Choudhary P, Aggarwal PR, Rana S, Singh RK, Ravikesavan R, Prasad M, Muthamilarasan M. De novo transcriptome analysis identifies key genes involved in dehydration stress response in kodo millet (Paspalum scrobiculatum L.). Genomics 2022; 114:110347. [PMID: 35337948 DOI: 10.1016/j.ygeno.2022.110347] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2021] [Revised: 02/08/2022] [Accepted: 03/18/2022] [Indexed: 01/14/2023]
Abstract
Kodo millet (Paspalum scrobiculatum L.) is a small millet species known for its excellent nutritional and climate-resilient traits. To understand the genes and pathways underlying dehydration stress tolerance of kodo millet, the transcriptome of cultivar 'CO3' subjected to dehydration stress (0 h, 3 h, and 6 h) was sequenced. The study generated 239.1 million clean reads that identified 9201, 9814, and 2346 differentially expressed genes (DEGs) in 0 h vs. 3 h, 0 h vs. 6 h, and 3 h vs. 6 h libraries, respectively. The DEGs were found to be associated with vital molecular pathways, including hormone metabolism and signaling, antioxidant scavenging, photosynthesis, and cellular metabolism, and were validated using qRT-PCR. Also, a higher abundance of uncharacterized genes expressed during stress warrants further studies to characterize this class of genes to understand their role in dehydration stress response. Altogether, the study provides insights into the transcriptomic response of kodo millet during dehydration stress.
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Affiliation(s)
- Bonthala Venkata Suresh
- Quantitative Genetics and Genomics of Plants, Heinrich Heine University, Düsseldorf 40225, Germany.
| | - Pooja Choudhary
- Department of Plant Sciences, School of Life Sciences, University of Hyderabad, Hyderabad 500046, Telangana, India
| | - Pooja Rani Aggarwal
- Department of Plant Sciences, School of Life Sciences, University of Hyderabad, Hyderabad 500046, Telangana, India
| | - Sumi Rana
- Department of Plant Sciences, School of Life Sciences, University of Hyderabad, Hyderabad 500046, Telangana, India.
| | | | - Rajasekaran Ravikesavan
- Department of Millets, Centre for Plant Breeding and Genetics, Tamil Nadu Agricultural University, Coimbatore, Tamil Nadu, India.
| | - Manoj Prasad
- Department of Plant Sciences, School of Life Sciences, University of Hyderabad, Hyderabad 500046, Telangana, India; National Institute of Plant Genome Research, New Delhi 110067, India.
| | - Mehanathan Muthamilarasan
- Department of Plant Sciences, School of Life Sciences, University of Hyderabad, Hyderabad 500046, Telangana, India.
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12
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Mudau FN, Chimonyo VGP, Modi AT, Mabhaudhi T. Neglected and Underutilised Crops: A Systematic Review of Their Potential as Food and Herbal Medicinal Crops in South Africa. Front Pharmacol 2022; 12:809866. [PMID: 35126143 PMCID: PMC8811033 DOI: 10.3389/fphar.2021.809866] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2021] [Accepted: 12/23/2021] [Indexed: 12/16/2022] Open
Abstract
The African continent harbours many native species with nutraceutical and pharmaceutical potential. This study reviewed underutilised crops in South Africa to determine their potential as food and herbal medicinal crops. Over 5,000 species have been identified and earmarked for their medical attributes in formal and informal setups. Researchers, plant breeders and policymakers have mostly ignored the development potential of these crops. Consequently, their value chains are poorly developed. In South Africa, there is a wide range of neglected and underutilised crops, which were historically popular and used by communities; however, over the years, they have lost their status within farming systems and been relegated to the status of neglected and underutilised. Recently, driven by the need to transition to more sustainable and resilient food systems, there has been renewed interest in their potential as food and herbal medicinal crops to establish new value chains that include vulnerable groups. They are now gaining global attention, and their conservation and sustainable utilisation are now being prioritized. The review confirmed that several of these crops possess nutraceutical and pharmaceutical properties, highlighting their potential for development as food and herbal medicines. However, current production levels are too low to meet the requirements for industrial development; research and development should focus on all aspects of their value chain, from crop improvement to utilisation. A transdisciplinary approach involving a wide range of actors is needed to develop the identified neglected and underutilised crops' potential as food and herbal medicinal crops and support the development of new and inclusive value chains.
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Affiliation(s)
- Fhatuwani Nixwell Mudau
- School of Agricultural, Earth and Environmental Sciences, University of KwaZulu-Natal, Pietermaritzburg, South Africa
| | - Vimbayi Grace Petrova Chimonyo
- Centre for Transformative Agricultural and Food Systems, School of Agricultural, Earth and Environmental Sciences, University of KwaZulu-Natal, Pietermaritzburg, South Africa
- International Maize and Wheat Improvement Center (CIMMYT), Harare, Zimbabwe
| | - Albert Thembinkosi Modi
- Centre for Transformative Agricultural and Food Systems, School of Agricultural, Earth and Environmental Sciences, University of KwaZulu-Natal, Pietermaritzburg, South Africa
| | - Tafadzwanashe Mabhaudhi
- Centre for Transformative Agricultural and Food Systems, School of Agricultural, Earth and Environmental Sciences, University of KwaZulu-Natal, Pietermaritzburg, South Africa
- International Water Management Institute (IWMI-GH), West Africa Office, Kumasi, Ghana
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13
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Erofeeva EA. Environmental hormesis of non-specific and specific adaptive mechanisms in plants. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 804:150059. [PMID: 34508935 DOI: 10.1016/j.scitotenv.2021.150059] [Citation(s) in RCA: 44] [Impact Index Per Article: 22.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/26/2021] [Revised: 08/25/2021] [Accepted: 08/27/2021] [Indexed: 05/17/2023]
Abstract
Adaptive responses of plants are important not only for local processes in populations and communities but also for global processes in the biosphere through the primary production of ecosystems. In recent years, the concept of environmental hormesis has been increasingly used to explain the adaptive responses of living organisms, including plants, to low doses of natural factors, both abiotic and biotic, as well as various anthropogenic impacts. However, the issues of whether plant hormesis is similar/different when it is induced by mild stressors having different specific effects and what is the contribution of hormetic stimulation of non-specific and specific adaptive mechanisms in plant resilience to strong stressors (i.e., preconditioning) remains unclear. This paper analyses hormetic stimulation of non-specific and specific adaptive mechanisms in plants and its significance for preconditioning, the phenomenon of the hormetic trade-off for these mechanisms, and the position of hormetic stimulation of non-specific and specific adaptive mechanisms in the system of plant adaptations to environmental challenges. The analysis has shown that both non-specific and specific adaptive mechanisms of plants can be stimulated hormetically by mild stressors and are important for plant preconditioning. Due to limited plant resources, non-specific and specific adaptive mechanisms have hormetic trades-offs 1 (hormesis accompanied by the deterioration of some plant traits) and 2 (hormesis of some plant traits with the invariability of others). At the same time, hormetic trade-off 2 is observed much more often than hormetic trade-off 1, at least, this was demonstrated here for non-specific adaptive responses of plants. The hormetic stimulation of non-specific and specific adaptive mechanisms is part of the inducible adaptation of plants caused by stress factors and is an adaptation to random (unpredictable) changes in the environment.
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Affiliation(s)
- Elena A Erofeeva
- Department of Ecology, Institute of Biology and Biomedicine, Lobachevsky State University of Nizhni Novgorod, 23 Gagarina Pr, Nizhni Novgorod 603950, Russian Federation.
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14
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Das A, Prakash A, Dedon N, Doty A, Siddiqui M, Preston JC. Variation in climatic tolerance, but not stomatal traits, partially explains Pooideae grass species distributions. ANNALS OF BOTANY 2021; 128:83-95. [PMID: 33772589 PMCID: PMC8318108 DOI: 10.1093/aob/mcab046] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/03/2021] [Accepted: 03/24/2021] [Indexed: 06/12/2023]
Abstract
BACKGROUND AND AIMS Grasses in subfamily Pooideae live in some of the world's harshest terrestrial environments, from frigid boreal zones to the arid windswept steppe. It is hypothesized that the climate distribution of species within this group is driven by differences in climatic tolerance, and that tolerance can be partially explained by variation in stomatal traits. METHODS We determined the aridity index (AI) and minimum temperature of the coldest month (MTCM) for 22 diverse Pooideae accessions and one outgroup, and used comparative methods to assess predicted relationships for climate traits versus fitness traits, stomatal diffusive conductance to water (gw) and speed of stomatal closure following drought and/or cold. KEY RESULTS Results demonstrate that AI and MTCM predict variation in survival/regreening following drought/cold, and gw under drought/cold is positively correlated with δ 13C-measured water use efficiency (WUE). However, the relationship between climate traits and fitness under drought/cold was not explained by gw or speed of stomatal closure. CONCLUSIONS These findings suggest that Pooideae distributions are at least partly determined by tolerance to aridity and above-freezing cold, but that variation in tolerance is not uniformly explained by variation in stomatal traits.
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Affiliation(s)
- Aayudh Das
- The University of Vermont, Department of Plant Biology, Burlington, VT 05405, USA
| | - Anoob Prakash
- The University of Vermont, Department of Plant Biology, Burlington, VT 05405, USA
| | - Natalie Dedon
- The University of Vermont, Department of Plant Biology, Burlington, VT 05405, USA
| | - Alex Doty
- The University of Vermont, Department of Plant Biology, Burlington, VT 05405, USA
| | - Muniba Siddiqui
- The University of Vermont, Department of Plant Biology, Burlington, VT 05405, USA
| | - Jill C Preston
- The University of Vermont, Department of Plant Biology, Burlington, VT 05405, USA
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15
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Musse M, Hajjar G, Ali N, Billiot B, Joly G, Pépin J, Quellec S, Challois S, Mariette F, Cambert M, Fontaine C, Ngo-Dinh C, Jamois F, Barbary A, Leconte P, Deleu C, Leport L. A global non-invasive methodology for the phenotyping of potato under water deficit conditions using imaging, physiological and molecular tools. PLANT METHODS 2021; 17:81. [PMID: 34301265 PMCID: PMC8299642 DOI: 10.1186/s13007-021-00771-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2021] [Accepted: 06/21/2021] [Indexed: 05/30/2023]
Abstract
BACKGROUND Drought is a major consequence of global heating that has negative impacts on agriculture. Potato is a drought-sensitive crop; tuber growth and dry matter content may both be impacted. Moreover, water deficit can induce physiological disorders such as glassy tubers and internal rust spots. The response of potato plants to drought is complex and can be affected by cultivar type, climatic and soil conditions, and the point at which water stress occurs during growth. The characterization of adaptive responses in plants presents a major phenotyping challenge. There is therefore a demand for the development of non-invasive analytical techniques to improve phenotyping. RESULTS This project aimed to take advantage of innovative approaches in MRI, phenotyping and molecular biology to evaluate the effects of water stress on potato plants during growth. Plants were cultivated in pots under different water conditions. A control group of plants were cultivated under optimal water uptake conditions. Other groups were cultivated under mild and severe water deficiency conditions (40 and 20% of field capacity, respectively) applied at different tuber growth phases (initiation, filling). Water stress was evaluated by monitoring soil water potential. Two fully-equipped imaging cabinets were set up to characterize plant morphology using high definition color cameras (top and side views) and to measure plant stress using RGB cameras. The response of potato plants to water stress depended on the intensity and duration of the stress. Three-dimensional morphological images of the underground organs of potato plants in pots were recorded using a 1.5 T MRI scanner. A significant difference in growth kinetics was observed at the early growth stages between the control and stressed plants. Quantitative PCR analysis was carried out at molecular level on the expression patterns of selected drought-responsive genes. Variations in stress levels were seen to modulate ABA and drought-responsive ABA-dependent and ABA-independent genes. CONCLUSIONS This methodology, when applied to the phenotyping of potato under water deficit conditions, provides a quantitative analysis of leaves and tubers properties at microstructural and molecular levels. The approaches thus developed could therefore be effective in the multi-scale characterization of plant response to water stress, from organ development to gene expression.
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Affiliation(s)
- M. Musse
- UR OPAALE, INRAE, 17 Avenue de Cucillé, CS 64427, 35044 Rennes, France
| | - G. Hajjar
- UR OPAALE, INRAE, 17 Avenue de Cucillé, CS 64427, 35044 Rennes, France
| | - N. Ali
- Centre Mondial de l’Innovation– Laboratoire Nutrition Végétale, Groupe Roullier, 18 Avenue Franklin Roosevelt, 35400 Saint-Malo, France
| | - B. Billiot
- Centre Mondial de l’Innovation– Laboratoire Nutrition Végétale, Groupe Roullier, 18 Avenue Franklin Roosevelt, 35400 Saint-Malo, France
| | - G. Joly
- Germicopa, 1 Allée Loeiz Herrieu, 29334 Quimper, France
| | - J. Pépin
- UR OPAALE, INRAE, 17 Avenue de Cucillé, CS 64427, 35044 Rennes, France
| | - S. Quellec
- UR OPAALE, INRAE, 17 Avenue de Cucillé, CS 64427, 35044 Rennes, France
| | - S. Challois
- UR OPAALE, INRAE, 17 Avenue de Cucillé, CS 64427, 35044 Rennes, France
| | - F. Mariette
- UR OPAALE, INRAE, 17 Avenue de Cucillé, CS 64427, 35044 Rennes, France
| | - M. Cambert
- UR OPAALE, INRAE, 17 Avenue de Cucillé, CS 64427, 35044 Rennes, France
| | - C. Fontaine
- Centre Mondial de l’Innovation– Laboratoire Nutrition Végétale, Groupe Roullier, 18 Avenue Franklin Roosevelt, 35400 Saint-Malo, France
| | - C. Ngo-Dinh
- Centre Mondial de l’Innovation– Laboratoire Nutrition Végétale, Groupe Roullier, 18 Avenue Franklin Roosevelt, 35400 Saint-Malo, France
| | - F. Jamois
- Centre Mondial de l’Innovation– Laboratoire Nutrition Végétale, Groupe Roullier, 18 Avenue Franklin Roosevelt, 35400 Saint-Malo, France
| | - A. Barbary
- Bretagne Plant Innovation, Roudouhir, 29460 Hanvec, France
| | - P. Leconte
- UMR IGEPP, INRAE, Institut Agro-Agrocampus Ouest, Université de Rennes 1, Domaine de la Motte, 35653 Le Rheu, France
| | - C. Deleu
- UMR IGEPP, INRAE, Institut Agro-Agrocampus Ouest, Université de Rennes 1, Domaine de la Motte, 35653 Le Rheu, France
| | - L. Leport
- UMR IGEPP, INRAE, Institut Agro-Agrocampus Ouest, Université de Rennes 1, Domaine de la Motte, 35653 Le Rheu, France
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16
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Martignago D, Rico-Medina A, Blasco-Escámez D, Fontanet-Manzaneque JB, Caño-Delgado AI. Drought Resistance by Engineering Plant Tissue-Specific Responses. FRONTIERS IN PLANT SCIENCE 2020; 10:1676. [PMID: 32038670 PMCID: PMC6987726 DOI: 10.3389/fpls.2019.01676] [Citation(s) in RCA: 49] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2019] [Accepted: 11/28/2019] [Indexed: 05/18/2023]
Abstract
Drought is the primary cause of agricultural loss globally, and represents a major threat to food security. Currently, plant biotechnology stands as one of the most promising fields when it comes to developing crops that are able to produce high yields in water-limited conditions. From studies of Arabidopsis thaliana whole plants, the main response mechanisms to drought stress have been uncovered, and multiple drought resistance genes have already been engineered into crops. So far, most plants with enhanced drought resistance have displayed reduced crop yield, meaning that there is still a need to search for novel approaches that can uncouple drought resistance from plant growth. Our laboratory has recently shown that the receptors of brassinosteroid (BR) hormones use tissue-specific pathways to mediate different developmental responses during root growth. In Arabidopsis, we found that increasing BR receptors in the vascular plant tissues confers resistance to drought without penalizing growth, opening up an exceptional opportunity to investigate the mechanisms that confer drought resistance with cellular specificity in plants. In this review, we provide an overview of the most promising phenotypical drought traits that could be improved biotechnologically to obtain drought-tolerant cereals. In addition, we discuss how current genome editing technologies could help to identify and manipulate novel genes that might grant resistance to drought stress. In the upcoming years, we expect that sustainable solutions for enhancing crop production in water-limited environments will be identified through joint efforts.
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Affiliation(s)
| | | | | | | | - Ana I. Caño-Delgado
- Department of Molecular Genetics, Centre for Research in Agricultural Genomics (CRAG) CSIC-IRTA-UAB-UB, Barcelona, Spain
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17
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Correa J, Postma JA, Watt M, Wojciechowski T. Soil compaction and the architectural plasticity of root systems. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:6019-6034. [PMID: 31504740 PMCID: PMC6859514 DOI: 10.1093/jxb/erz383] [Citation(s) in RCA: 69] [Impact Index Per Article: 13.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2019] [Accepted: 08/15/2019] [Indexed: 05/18/2023]
Abstract
Soil compaction is a serious global problem, and is a major cause of inadequate rooting and poor yield in crops around the world. Root system architecture (RSA) describes the spatial arrangement of root components within the soil and determines the plant's exploration of the soil. Soil strength restricts root growth and may slow down root system development. RSA plasticity may have an adaptive value, providing environmental tolerance to soil compaction. However, it is challenging to distinguish developmental retardation (apparent plasticity) or responses to severe stress from those root architectural changes that may provide an actual environmental tolerance (adaptive plasticity). In this review, we outline the consequences of soil compaction on the rooting environment and extensively review the various root responses reported in the literature. Finally, we discuss which responses enhance root exploration capabilities in tolerant genotypes, and to what extent these responses might be useful for breeding. We conclude that RSA plasticity in response to soil compaction is complex and can be targeted in breeding to increase the performance of crops under specific agronomical conditions.
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Affiliation(s)
- José Correa
- Institute of Biosciences and Geosciences (IBG-2): Plant Sciences, Forschungszentrum Jülich GmbH, Wilhelm-Johnen-Strasse, Jülich,Germany
| | - Johannes A Postma
- Institute of Biosciences and Geosciences (IBG-2): Plant Sciences, Forschungszentrum Jülich GmbH, Wilhelm-Johnen-Strasse, Jülich,Germany
| | - Michelle Watt
- Institute of Biosciences and Geosciences (IBG-2): Plant Sciences, Forschungszentrum Jülich GmbH, Wilhelm-Johnen-Strasse, Jülich,Germany
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18
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Acevedo RM, Avico EH, González S, Salvador AR, Rivarola M, Paniego N, Nunes-Nesi A, Ruiz OA, Sansberro PA. Transcript and metabolic adjustments triggered by drought in Ilex paraguariensis leaves. PLANTA 2019; 250:445-462. [PMID: 31055624 DOI: 10.1007/s00425-019-03178-3] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/16/2018] [Accepted: 04/27/2019] [Indexed: 06/09/2023]
Abstract
Abscisic acid is involved in the drought response of Ilex paraguariensis. Acclimation includes root growth stimulation, stomatal closure, osmotic adjustment, photoprotection, and regulation of nonstructural carbohydrates and amino acid metabolisms. Ilex paraguariensis (yerba mate) is cultivated in the subtropical region of South America, where the occurrence of drought episodes limit yield. To explore the mechanisms that allow I. paraguariensis to overcome dehydration, we investigated (1) how gene expression varied between water-stressed and non-stressed plants and (2) in what way the modulation of gene expression was linked to physiological status and metabolite composition. A total of 4920 differentially expressed transcripts were obtained through RNA-Seq after water deprivation. Drought induced the expression of several transcripts involved in the ABA-signalling pathway. Stomatal closure and leaf osmotic adjustments were promoted to minimize water loss, and these responses were accompanied by a high transcriptional remodeling of stress perception, signalling and transcriptional regulation, the photoprotective and antioxidant systems, and other stress-responsive genes. Simultaneously, significant changes in metabolite contents were detected. Glutamine, phenylalanine, isomaltose, fucose, and malate levels were shown to be positively correlated with dehydration. Principal component analysis showed differences in the metabolic profiles of control and stressed leaves. These results provide a comprehensive overview of how I. paraguariensis responds to dehydration at transcriptional and metabolomic levels and provide further characterization of the molecular mechanisms associated with drought response in perennial subtropical species.
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Affiliation(s)
- Raúl M Acevedo
- Laboratorio de Biotecnología Aplicada y Genómica Funcional. Facultad de Ciencias Agrarias, Instituto de Botánica del Nordeste (IBONE-CONICET), Universidad Nacional del Nordeste, W3402BKG, Corrientes, Argentina
| | - Edgardo H Avico
- Laboratorio de Biotecnología Aplicada y Genómica Funcional. Facultad de Ciencias Agrarias, Instituto de Botánica del Nordeste (IBONE-CONICET), Universidad Nacional del Nordeste, W3402BKG, Corrientes, Argentina
| | - Sergio González
- Instituto de Biotecnología, CICVyA (INTA), 1686, Hurlingham, Buenos Aires, Argentina
| | | | - Máximo Rivarola
- Instituto de Biotecnología, CICVyA (INTA), 1686, Hurlingham, Buenos Aires, Argentina
| | - Norma Paniego
- Instituto de Biotecnología, CICVyA (INTA), 1686, Hurlingham, Buenos Aires, Argentina
| | - Adriano Nunes-Nesi
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900, Viçosa, MG, Brazil
| | - Oscar A Ruiz
- Unidad de Biotecnología 1, IIB-INTECH (UNSAM-CONICET), B7130IWA, Chascomús, Argentina
- Instituto de Fisiología y Recursos Genéticos Vegetales (IFRGV) "Ing. Victorio S. Trippi" (CIAP-INTA), X5020ICA, Córdoba, Argentina
| | - Pedro A Sansberro
- Laboratorio de Biotecnología Aplicada y Genómica Funcional. Facultad de Ciencias Agrarias, Instituto de Botánica del Nordeste (IBONE-CONICET), Universidad Nacional del Nordeste, W3402BKG, Corrientes, Argentina.
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Raines C, Ingram J. JXB at SEB Florence 2018. JOURNAL OF EXPERIMENTAL BOTANY 2018; 69:3797-3799. [PMID: 29905802 PMCID: PMC6054182 DOI: 10.1093/jxb/ery218] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Affiliation(s)
- Christine Raines
- Department of Biological Sciences, University of Essex, Colchester, UK
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20
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Volaire F. A unified framework of plant adaptive strategies to drought: Crossing scales and disciplines. GLOBAL CHANGE BIOLOGY 2018; 24:2929-2938. [PMID: 29350812 DOI: 10.1111/gcb.14062] [Citation(s) in RCA: 105] [Impact Index Per Article: 17.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2017] [Accepted: 12/21/2017] [Indexed: 05/07/2023]
Abstract
Plant adaptation to drought has been extensively studied at many scales from ecology to molecular biology across a large range of model species. However, the conceptual frameworks underpinning the definition of plant strategies, and the terminology used across the different disciplines and scales are not analogous. 'Drought resistance' for instance refers to plant responses as different as the maintenance of growth and productivity in crops, to the survival and recovery in perennial woody or grassland species. Therefore, this paper aims to propose a unified conceptual framework of plant adaptive strategies to drought based on a revised terminology in order to enhance comparative studies. Ecological strategies encapsulate plant adaptation to multidimensional variation in resource variability but cannot account for the dynamic and short-term responses to fluctuations in water availability. Conversely, several plant physiological strategies have been identified along the mono-dimensional gradient of water availability in a given environment. According to a revised terminology, dehydration escape, dehydration avoidance, dehydration tolerance, dormancy, and desiccation tolerance are clearly distinguishable. Their sequential expression is expressed as water deficit increases while cavitation tolerance is proposed here to be a major hydraulic strategy underpinning adaptive responses to drought of vascular plants. This continuum of physiological strategies can be interpreted in the context of the ecological trade-off between water-acquisition vs. water-conservation, since growth maintenance is associated with fast water use under moderate drought while plant survival after growth cessation is associated with slow water use under severe drought. Consequently, the distinction between 'drought resistance' and 'drought survival', is emphasized as crucial to ensure a correct interpretation of plant strategies since 'knowing when not to grow' does not confer 'drought resistance' but may well enhance 'drought survival'. This framework proposal should improve cross-fertilization between disciplines to help tackle the increasing worldwide challenges that drought poses to plant adaptation.
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Affiliation(s)
- Florence Volaire
- INRA USC 1338, CEFE UMR 5175, CNRS, Université de Montpellier - Université Paul Valéry - EPHE, Montpellier Cedex, France
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21
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Varshney RK, Tuberosa R, Tardieu F. Progress in understanding drought tolerance: from alleles to cropping systems. JOURNAL OF EXPERIMENTAL BOTANY 2018; 69:3175-3179. [PMID: 29878257 PMCID: PMC5991209 DOI: 10.1093/jxb/ery187] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Affiliation(s)
- Rajeev K Varshney
- Center of Excellence in Genomics & Systems Biology (CEGSB), International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India
| | - Roberto Tuberosa
- Department of Agricultural and Food Sciences, University of Bologna, Italy
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22
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Blum A, Tuberosa R. Dehydration survival of crop plants and its measurement. JOURNAL OF EXPERIMENTAL BOTANY 2018; 69:975-981. [PMID: 29325054 PMCID: PMC6018961 DOI: 10.1093/jxb/erx445] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/28/2017] [Accepted: 12/08/2017] [Indexed: 05/07/2023]
Abstract
Dehydration survival under drought stress is defined in this review as the transition from plant activity into a quiescent state of life preservation, which will be terminated by either recovery or death, depending on the stress regime and the plant's resilience. Dehydration survival is a popular phenotype by which functional genomics attempts to test gene function in drought resistance and survival. The available reports on phenotyping and genotyping of dehydration survival in genomic studies indicate that the measurement of this trait is often biased to the extent that misguided interpretations are likely to occur. This review briefly discusses the physiological basis of dehydration survival in resurrection plants and crop plants, and concludes that in phenotyping dehydration survival there is a need to distinguish between dehydration avoidance and dehydration tolerance (also termed desiccation tolerance) in affecting survival and recovery. Without this distinction, functional genomics studies of the trait might be biased. Survival due to dehydration avoidance is expressed by the capacity to maintain a relatively high plant water status as the plant is desiccated. Survival due to dehydration tolerance is expressed by delayed mortality (mortality at a relatively low plant water status) as affected by the resilience of plant metabolism. The common test of dehydration survival, using the relative recovery after a given number of stress days, is therefore insufficient because it is mainly driven by dehydration avoidance and so ignores a possible role for dehydration tolerance. Conceivable methods for more accurate phenotyping of the two components of dehydration survival are proposed and discussed.
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Affiliation(s)
| | - Roberto Tuberosa
- Department of Agricultural Sciences, University of Bologna, Viale Fanin, Bologna, Italy
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Kosová K, Vítámvás P, Urban MO, Prášil IT, Renaut J. Plant Abiotic Stress Proteomics: The Major Factors Determining Alterations in Cellular Proteome. FRONTIERS IN PLANT SCIENCE 2018; 9:122. [PMID: 29472941 PMCID: PMC5810178 DOI: 10.3389/fpls.2018.00122] [Citation(s) in RCA: 137] [Impact Index Per Article: 22.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2017] [Accepted: 01/23/2018] [Indexed: 05/19/2023]
Abstract
HIGHLIGHTS: Major environmental and genetic factors determining stress-related protein abundance are discussed.Major aspects of protein biological function including protein isoforms and PTMs, cellular localization and protein interactions are discussed.Functional diversity of protein isoforms and PTMs is discussed. Abiotic stresses reveal profound impacts on plant proteomes including alterations in protein relative abundance, cellular localization, post-transcriptional and post-translational modifications (PTMs), protein interactions with other protein partners, and, finally, protein biological functions. The main aim of the present review is to discuss the major factors determining stress-related protein accumulation and their final biological functions. A dynamics of stress response including stress acclimation to altered ambient conditions and recovery after the stress treatment is discussed. The results of proteomic studies aimed at a comparison of stress response in plant genotypes differing in stress adaptability reveal constitutively enhanced levels of several stress-related proteins (protective proteins, chaperones, ROS scavenging- and detoxification-related enzymes) in the tolerant genotypes with respect to the susceptible ones. Tolerant genotypes can efficiently adjust energy metabolism to enhanced needs during stress acclimation. Stress tolerance vs. stress susceptibility are relative terms which can reflect different stress-coping strategies depending on the given stress treatment. The role of differential protein isoforms and PTMs with respect to their biological functions in different physiological constraints (cellular compartments and interacting partners) is discussed. The importance of protein functional studies following high-throughput proteome analyses is presented in a broader context of plant biology. In summary, the manuscript tries to provide an overview of the major factors which have to be considered when interpreting data from proteomic studies on stress-treated plants.
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Affiliation(s)
- Klára Kosová
- Division of Crop Genetics and Breeding, Laboratory of Plant Stress Biology and Biotechnology, Crop Research Institute, Prague, Czechia
- Department of Experimental Plant Biology, Faculty of Science, Charles University in Prague, Prague, Czechia
| | - Pavel Vítámvás
- Division of Crop Genetics and Breeding, Laboratory of Plant Stress Biology and Biotechnology, Crop Research Institute, Prague, Czechia
- Department of Experimental Plant Biology, Faculty of Science, Charles University in Prague, Prague, Czechia
| | - Milan O. Urban
- Division of Crop Genetics and Breeding, Laboratory of Plant Stress Biology and Biotechnology, Crop Research Institute, Prague, Czechia
- Department of Experimental Plant Biology, Faculty of Science, Charles University in Prague, Prague, Czechia
| | - Ilja T. Prášil
- Division of Crop Genetics and Breeding, Laboratory of Plant Stress Biology and Biotechnology, Crop Research Institute, Prague, Czechia
| | - Jenny Renaut
- Environmental Research and Technology Platform, Environmental Research and Innovation, Luxembourg Institute of Science and Technology (LIST), Esch-sur-Alzette, Luxembourg
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Abstract
The influence of time on the drought response of Brassica rapa, an agriculturally important species of plant, has been clarified.
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Affiliation(s)
- David L Des Marais
- Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, United States
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25
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Status of Underutilised Crops in South Africa: Opportunities for Developing Research Capacity. SUSTAINABILITY 2017. [DOI: 10.3390/su9091569] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Abstract
Underutilised crops represent an important component of agro-biodiversity with potential to contribute to climate change adaptation, food security and sovereignty in poor rural areas. However, despite emerging research interest, they continue to occupy the peripheries of mainstream agriculture. There is a need to consolidate the gains made and propose a coherent strategy for translating underutilised crops into mainstream agriculture. The status of underutilised crops in South Africa (past, present and on-going research) was reviewed with a view to identifying existing gaps, opportunities and challenges for developing future research capacity. The review confirmed that several underutilised crops are drought tolerant, adapted to low levels of water use and thus suitable for cultivation in most marginal production areas typical of semi-arid and arid cropping systems. In addition, several are nutrient dense and could be used to improve dietary diversity among poor rural people. These characteristics make them ideal for inclusion in climate change adaptation and promotion of food sovereignty. There is need for a paradigm shift away from practices that have promoted a few major crops to an agro-ecology based land use classification system that recognises diversity and strengthens food networks. There is a need to identify those underutilised crops that show the greatest potential for success and can be fitted into semi-arid and arid cropping systems and prioritise them for future research, development and innovation.
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Ligaba-Osena A, Fei Z, Liu J, Xu Y, Shaff J, Lee SC, Luan S, Kudla J, Kochian L, Piñeros M. Loss-of-function mutation of the calcium sensor CBL1 increases aluminum sensitivity in Arabidopsis. THE NEW PHYTOLOGIST 2017; 214:830-841. [PMID: 28150888 DOI: 10.1111/nph.14420] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2016] [Accepted: 12/01/2016] [Indexed: 05/11/2023]
Abstract
Despite the physiological importance of aluminum (Al) phytotoxicity for plants, it remained unknown if, and how, calcineurin B-like calcium sensors (CBLs) and CBL-interacting protein kinases (CIPKs) are involved in Al resistance. We performed a comparative physiological and whole transcriptome investigation of an Arabidopsis CBL1 mutant (cbl1) and the wild-type (WT). cbl1 plants exudated less Al-chelating malate, accumulated more Al, and displayed a severe root growth reduction in response to Al. Genes involved in metabolism, transport, cell wall modification, transcription and oxidative stress were differentially regulated between the two lines, under both control and Al stress treatments. Exposure to Al resulted in up-regulation of a large set of genes only in WT and not cbl1 shoots, while a different set of genes were down-regulated in cbl1 but not in WT roots. These differences allowed us, for the first time, to define a calcium-regulated/dependent transcriptomic network for Al stress responses. Our analyses reveal not only the fundamental role of CBL1 in the adjustment of central transcriptomic networks involved in maintaining adequate physiological homeostasis processes, but also that a high shoot-root dynamics is required for the proper deployment of Al resistance responses in the root.
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Affiliation(s)
- Ayalew Ligaba-Osena
- Robert W. Holley Center for Agriculture and Health, USDA-ARS, Cornell University, Ithaca, NY, 14853, USA
| | - Zhangjun Fei
- Boyce Thompson Institute for Plant Research, Cornell University, Ithaca, NY, 14853, USA
| | - Jiping Liu
- Robert W. Holley Center for Agriculture and Health, USDA-ARS, Cornell University, Ithaca, NY, 14853, USA
| | - Yimin Xu
- Boyce Thompson Institute for Plant Research, Cornell University, Ithaca, NY, 14853, USA
| | - Jon Shaff
- Robert W. Holley Center for Agriculture and Health, USDA-ARS, Cornell University, Ithaca, NY, 14853, USA
| | - Sung-Chul Lee
- Department of Plant and Microbial Biology, University of California, Berkeley, CA, 94720, USA
- Department of Life Science, Chung-Ang University, Seoul, 06974, Korea
| | - Sheng Luan
- Department of Plant and Microbial Biology, University of California, Berkeley, CA, 94720, USA
| | - Jörg Kudla
- Westfälische Wilhelms-Universität Münster, Institut für Biologie und Biotechnologie der Pflanzen, Schlossplatz 7, 48149, Münster, Germany
| | - Leon Kochian
- Robert W. Holley Center for Agriculture and Health, USDA-ARS, Cornell University, Ithaca, NY, 14853, USA
| | - Miguel Piñeros
- Robert W. Holley Center for Agriculture and Health, USDA-ARS, Cornell University, Ithaca, NY, 14853, USA
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Tardieu F, Varshney RK, Tuberosa R. Improving crop performance under drought - cross-fertilization of disciplines. JOURNAL OF EXPERIMENTAL BOTANY 2017; 68:1393-1398. [PMID: 28338855 PMCID: PMC5444440 DOI: 10.1093/jxb/erx042] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
Affiliation(s)
| | - Rajeev K Varshney
- Research Programme - Genetic Gains, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru-502 324, India
| | - Roberto Tuberosa
- Department of Agricultural Sciences, Viale Fanin 44, 40127 Bologna, Italy
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28
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Raines C, Traynor M, Ingram J. Experimental botany in 2017. JOURNAL OF EXPERIMENTAL BOTANY 2017; 68:347-349. [PMID: 28201652 PMCID: PMC5444439 DOI: 10.1093/jxb/erw504] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Affiliation(s)
- Christine Raines
- Editor in Chief, Journal of Experimental BotanyDepartment of Biological Sciences, University of Essex, Colchester, UK
| | - Mary Traynor
- Executive Editor, Journal of Experimental BotanyBailrigg House, Lancaster University, Lancaster, UK
| | - Jonathan Ingram
- Senior Commissioning Editor/ Science Writer, Journal of Experimental BotanyBailrigg House, Lancaster University, Lancaster, UK
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29
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Maron LG, Piñeros MA, Kochian LV, McCouch SR. Redefining 'stress resistance genes', and why it matters. JOURNAL OF EXPERIMENTAL BOTANY 2016; 67:5588-5591. [PMID: 27702993 PMCID: PMC5066486 DOI: 10.1093/jxb/erw323] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Affiliation(s)
- Lyza G Maron
- School of Integrative Plant Science, Plant Breeding and Genetics section, Cornell University, Ithaca, NY 14853, USA
| | - Miguel A Piñeros
- Robert W. Holley Center for Agriculture and Health, USDA-ARS, Cornell University, Ithaca, NY 14853, USA
| | - Leon V Kochian
- Robert W. Holley Center for Agriculture and Health, USDA-ARS, Cornell University, Ithaca, NY 14853, USA Current address: Global Institute for Food Security, University of Saskatchewan, Saskatoon, S7N 5A8, Canada
| | - Susan R McCouch
- School of Integrative Plant Science, Plant Breeding and Genetics section, Cornell University, Ithaca, NY 14853, USA
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