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Gao H, Li D, Hu H, Zhou F, Yu Y, Wei Q, Liu Q, Liu M, Hu P, Chen E, Song P, Su X, Guan Y, Qiao M, Ru Z, Li C. Regulation of carbohydrate metabolism during anther development in a thermo-sensitive genic male-sterile wheat line. PLANT, CELL & ENVIRONMENT 2024; 47:2410-2425. [PMID: 38517937 DOI: 10.1111/pce.14888] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/24/2023] [Revised: 03/03/2024] [Accepted: 03/05/2024] [Indexed: 03/24/2024]
Abstract
Bainong sterility (BNS) is a thermo-sensitive genic male sterile wheat line, characterised by anther fertility transformation in response to low temperature (LT) stress during meiosis, the failure of vacuole decomposition and the absence of starch accumulation in sterile bicellular pollen. Our study demonstrates that the late microspore (LM) stage marks the transition from the anther growth to anther maturation phase, characterised by the changes in anther structure, carbohydrate metabolism and the main transport pathway of sucrose (Suc). Fructan is a main storage polysaccharide in wheat anther, and its synthesis and remobilisation are crucial for anther development. Moreover, the process of pollen amylogenesis and the fate of the large vacuole in pollen are closely intertwined with fructan synthesis and remobilisation. LT disrupts the normal physiological metabolism of BNS anthers during meiosis, particularly affecting carbohydrate metabolism, thus determining the fate of male gametophytes and pollen abortion. Disruption of fructan synthesis and remobilisation regulation serves as a decisive event that results in anther abortion. Sterile pollen exhibits common traits of pollen starvation and impaired starch accumulation due to the inhibition of apoplastic transport starting from the LM stage, which is regulated by cell wall invertase TaIVR1 and Suc transporter TaSUT1.
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Affiliation(s)
- Huanting Gao
- Henan Engineering Research Centre of Crop Genome Editing, Henan Institute of Science and Technology, Xinxiang, Henan, China
| | - Dongxiao Li
- Henan Engineering Research Centre of Crop Genome Editing, Henan Institute of Science and Technology, Xinxiang, Henan, China
- Henan Collaborative Innovation Centre of Modern Biological Breeding, Henan Institute of Science and Technology, Xinxiang, Henan, China
- Henan Provincial Key Laboratory of Hybrid Wheat, Henan Institute of Science and Technology, Xinxiang, Henan, China
| | - Haiyan Hu
- Henan Engineering Research Centre of Crop Genome Editing, Henan Institute of Science and Technology, Xinxiang, Henan, China
- Henan Collaborative Innovation Centre of Modern Biological Breeding, Henan Institute of Science and Technology, Xinxiang, Henan, China
- Henan Provincial Key Laboratory of Hybrid Wheat, Henan Institute of Science and Technology, Xinxiang, Henan, China
| | - Feng Zhou
- Henan Engineering Research Centre of Crop Genome Editing, Henan Institute of Science and Technology, Xinxiang, Henan, China
| | - Yongang Yu
- Henan Engineering Research Centre of Crop Genome Editing, Henan Institute of Science and Technology, Xinxiang, Henan, China
- Henan Collaborative Innovation Centre of Modern Biological Breeding, Henan Institute of Science and Technology, Xinxiang, Henan, China
- Henan Provincial Key Laboratory of Hybrid Wheat, Henan Institute of Science and Technology, Xinxiang, Henan, China
| | - Qichao Wei
- Henan Engineering Research Centre of Crop Genome Editing, Henan Institute of Science and Technology, Xinxiang, Henan, China
- Henan Collaborative Innovation Centre of Modern Biological Breeding, Henan Institute of Science and Technology, Xinxiang, Henan, China
- Henan Provincial Key Laboratory of Hybrid Wheat, Henan Institute of Science and Technology, Xinxiang, Henan, China
| | - Qili Liu
- Henan Engineering Research Centre of Crop Genome Editing, Henan Institute of Science and Technology, Xinxiang, Henan, China
| | - Mingjiu Liu
- Henan Engineering Research Centre of Crop Genome Editing, Henan Institute of Science and Technology, Xinxiang, Henan, China
- Henan Collaborative Innovation Centre of Modern Biological Breeding, Henan Institute of Science and Technology, Xinxiang, Henan, China
- Henan Provincial Key Laboratory of Hybrid Wheat, Henan Institute of Science and Technology, Xinxiang, Henan, China
| | - Ping Hu
- Henan Engineering Research Centre of Crop Genome Editing, Henan Institute of Science and Technology, Xinxiang, Henan, China
- Henan Collaborative Innovation Centre of Modern Biological Breeding, Henan Institute of Science and Technology, Xinxiang, Henan, China
- Henan Provincial Key Laboratory of Hybrid Wheat, Henan Institute of Science and Technology, Xinxiang, Henan, China
| | - Eryong Chen
- Henan Engineering Research Centre of Crop Genome Editing, Henan Institute of Science and Technology, Xinxiang, Henan, China
- Henan Collaborative Innovation Centre of Modern Biological Breeding, Henan Institute of Science and Technology, Xinxiang, Henan, China
- Henan Provincial Key Laboratory of Hybrid Wheat, Henan Institute of Science and Technology, Xinxiang, Henan, China
| | - Puwen Song
- Henan Engineering Research Centre of Crop Genome Editing, Henan Institute of Science and Technology, Xinxiang, Henan, China
- Henan Collaborative Innovation Centre of Modern Biological Breeding, Henan Institute of Science and Technology, Xinxiang, Henan, China
- Henan Provincial Key Laboratory of Hybrid Wheat, Henan Institute of Science and Technology, Xinxiang, Henan, China
| | - Xiaojia Su
- Henan Engineering Research Centre of Crop Genome Editing, Henan Institute of Science and Technology, Xinxiang, Henan, China
- Henan Collaborative Innovation Centre of Modern Biological Breeding, Henan Institute of Science and Technology, Xinxiang, Henan, China
| | - Yuanyuan Guan
- Henan Engineering Research Centre of Crop Genome Editing, Henan Institute of Science and Technology, Xinxiang, Henan, China
- Henan Collaborative Innovation Centre of Modern Biological Breeding, Henan Institute of Science and Technology, Xinxiang, Henan, China
| | - Mei Qiao
- College of Science and Engineering, Hebei Agricultural University, Baoding, Hebei, China
| | - Zhengang Ru
- Henan Collaborative Innovation Centre of Modern Biological Breeding, Henan Institute of Science and Technology, Xinxiang, Henan, China
- Henan Provincial Key Laboratory of Hybrid Wheat, Henan Institute of Science and Technology, Xinxiang, Henan, China
| | - Chengwei Li
- Henan Engineering Research Centre of Crop Genome Editing, Henan Institute of Science and Technology, Xinxiang, Henan, China
- College of Life Science, Henan Agricultural University, Zhengzhou, Henan, China
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Han E, Geng Z, Qin Y, Wang Y, Ma S. Single-cell network analysis reveals gene expression programs for Arabidopsis root development and metabolism. PLANT COMMUNICATIONS 2024:100978. [PMID: 38783601 DOI: 10.1016/j.xplc.2024.100978] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/03/2024] [Revised: 03/24/2024] [Accepted: 05/20/2024] [Indexed: 05/25/2024]
Abstract
Single-cell RNA-sequencing datasets of Arabidopsis roots have been generated, but related comprehensive gene co-expression network analyses are lacking. We conducted a single-cell gene co-expression network analysis with publicly available scRNA-seq datasets of Arabidopsis roots using a SingleCellGGM algorithm. The analysis identified 149 gene co-expression modules, which we considered to be gene expression programs (GEPs). By examining their spatiotemporal expression, we identified GEPs specifically expressed in major root cell types along their developmental trajectories. These GEPs define gene programs regulating root cell development at different stages and are enriched with relevant developmental regulators. As examples, a GEP specific for the quiescent center (QC) contains 20 genes regulating QC and stem cell niche homeostasis, and four GEPs are expressed in sieve elements (SEs) from early to late developmental stages, with the early-stage GEP containing 17 known SE developmental regulators. We also identified GEPs for metabolic pathways with cell-type-specific expression, suggesting the existence of cell-type-specific metabolism in roots. Using the GEPs, we discovered and verified a columella-specific gene, NRL27, as a regulator of the auxin-related root gravitropism response. Our analysis thus systematically reveals GEPs that regulate Arabidopsis root development and metabolism and provides ample resources for root biology studies.
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Affiliation(s)
- Ershang Han
- MOE Key Laboratory for Cellular Dynamics, School of Life Sciences, Division of Life Sciences and Medicine, University of Science and Technology of China, Innovation Academy for Seed Design, Chinese Academy of Sciences, Hefei 230027, China
| | - Zhenxing Geng
- MOE Key Laboratory for Cellular Dynamics, School of Life Sciences, Division of Life Sciences and Medicine, University of Science and Technology of China, Innovation Academy for Seed Design, Chinese Academy of Sciences, Hefei 230027, China
| | - Yue Qin
- MOE Key Laboratory for Cellular Dynamics, School of Life Sciences, Division of Life Sciences and Medicine, University of Science and Technology of China, Innovation Academy for Seed Design, Chinese Academy of Sciences, Hefei 230027, China
| | - Yuewei Wang
- MOE Key Laboratory for Cellular Dynamics, School of Life Sciences, Division of Life Sciences and Medicine, University of Science and Technology of China, Innovation Academy for Seed Design, Chinese Academy of Sciences, Hefei 230027, China
| | - Shisong Ma
- MOE Key Laboratory for Cellular Dynamics, School of Life Sciences, Division of Life Sciences and Medicine, University of Science and Technology of China, Innovation Academy for Seed Design, Chinese Academy of Sciences, Hefei 230027, China; School of Data Science, University of Science and Technology of China, Hefei 230027, China.
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Huang J, Ma S, Zhou M, Liu Z, Liang Q. Cytochemical localization and synthesis mechanism of the glucomannan in pseudobulbs of Bletilla striata Reichb. f. HORTICULTURE RESEARCH 2024; 11:uhae092. [PMID: 38799126 PMCID: PMC11116825 DOI: 10.1093/hr/uhae092] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/30/2023] [Accepted: 03/25/2024] [Indexed: 05/29/2024]
Abstract
The dried pseudobulbs of Bletilla striata, an important traditional Chinese medicine named BaiJi, have an extraordinary polysaccharide content and excellent prospects for medicinal effects. However, the distribution and molecular mechanism underlying biosynthesis are poorly understood. In this study, chemical and immunologic analyses were performed in representative tissues of B. striata, and the results showed that what are conventionally termed Bletilla striata polysaccharides (BSPs) are water-soluble polysaccharides deposited only in pseudobulbs. The structural component of BSPs is glucomannan, with a mannose:glucose mass ratio of ~3:2. BSPs are present in the parenchyma of the pseudobulbs in cells known as glucomannan idioblasts and distributed in the cytoplasm within cellular membranes, but are not contained in the vacuole. Comparative transcriptomics and bioinformatics analyses mapped the pathway from sucrose to BSP and identified BsGPI, BsmanA, and BsCSLAs as the key genes of BSP biosynthesis, suggesting that the functional differentiation of the cellulose synthase-like family A (CSLA) may be critical for the flow of glucomannan to the BSP or cell wall. Subsequently, virus-mediated gene silencing showed that silencing of two CSLAs (Bs03G11846 and Bs03G11849) led to a decrease in BSP content, and yeast two-hybrid and luciferase complementation experiments confirmed that four CSLAs (Bs03G11846, Bs03G11847, Bs03G11848, and Bs03G11849) can form homo- or heterodimers, suggesting that multiple CSLAs may form a large complex that functions in BSP synthesis. Our results provide cytological evidence of BSP and describe the isolation and characterization of candidate genes involved in BSP synthesis, laying a solid foundation for further research on its regulation mechanisms and the genetic engineering breeding of B. striata.
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Affiliation(s)
- Junfeng Huang
- Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China
| | - Shuang Ma
- Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China
| | - Ming Zhou
- Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China
| | - Zhihao Liu
- Key Laboratory of Edible Wild Plants Conservation and Utilization, Hubei Normal University, Huangshi City 435002, China
| | - Qiong Liang
- Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China
- Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China
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Jiang Z, Yang H, Zhu M, Wu L, Yan F, Qian H, He W, Liu D, Chen H, Chen L, Ding Y, Sakr S, Li G. The Inferior Grain Filling Initiation Promotes the Source Strength of Rice Leaves. RICE (NEW YORK, N.Y.) 2023; 16:41. [PMID: 37715876 PMCID: PMC10505135 DOI: 10.1186/s12284-023-00656-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2023] [Accepted: 08/22/2023] [Indexed: 09/18/2023]
Abstract
Poor grain-filling initiation in inferior spikelets severely impedes rice yield improvement, while photo-assimilates from source leaves can greatly stimulate the initiation of inferior grain-filling (sink). To investigate the underlying mechanism of source-sink interaction, a two-year field experiment was conducted in 2019 and 2020 using two large-panicle rice cultivars (CJ03 and W1844). The treatments included intact panicles and partial spikelet removal. These two cultivars showed no significant difference in the number of spikelets per panicle. However, after removing spikelet, W1844 showed higher promotion on 1000-grain weight and seed-setting rate than CJ03, particularly for inferior spikelets. The reason was that the better sink activity of W1844 led to a more effective initiation of inferior grain-filling compared to CJ03. The inferior grain weight of CJ03 and W1844 did not show a significant increase until 8 days poster anthesis (DPA), which follows a similar pattern to the accumulation of photo-assimilates in leaves. After removing spikelets, the source leaves of W1844 exhibited lower photosynthetic inhibition compared to CJ03, as well as stronger metabolism and transport of photo-assimilates. Although T6P levels remained constant in both cultivars under same conditions, the source leaves of W1844 showed notable downregulation of SnRK1 activity and upregulation of phytohormones (such as abscisic acid, cytokinins, and auxin) after removing spikelets. Hence, the high sink strength of inferior spikelets plays a role in triggering the enhancement of source strength in rice leaves, thereby fulfilling grain-filling initiation demands.
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Affiliation(s)
- Zhengrong Jiang
- Sanya Institute of Nanjing Agriculture, Jiangsu Collaborative Innovation Center for Modern Crop Production, Key Laboratory of Crop Physiology Ecology and Production Management, Nanjing Agricultural University, Sanya, 572000, China
- China- Kenya Belt and Road Joint Laboratory on Crop Molecular Biology, Nanjing, 210095, China
- Institut Agro, University of Angers, INRAE, IRHS, SFR 4207 QUASAV, Angers, 49000, France
| | - Hongyi Yang
- Sanya Institute of Nanjing Agriculture, Jiangsu Collaborative Innovation Center for Modern Crop Production, Key Laboratory of Crop Physiology Ecology and Production Management, Nanjing Agricultural University, Sanya, 572000, China
- China- Kenya Belt and Road Joint Laboratory on Crop Molecular Biology, Nanjing, 210095, China
| | - Meichen Zhu
- Sanya Institute of Nanjing Agriculture, Jiangsu Collaborative Innovation Center for Modern Crop Production, Key Laboratory of Crop Physiology Ecology and Production Management, Nanjing Agricultural University, Sanya, 572000, China
- China- Kenya Belt and Road Joint Laboratory on Crop Molecular Biology, Nanjing, 210095, China
| | - Longmei Wu
- Rice Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China
| | - Feiyu Yan
- School of Life Sciences and Food Engineering, Huaiyin Institute of Technology, Huai'an, 223003, China
| | - Haoyu Qian
- Sanya Institute of Nanjing Agriculture, Jiangsu Collaborative Innovation Center for Modern Crop Production, Key Laboratory of Crop Physiology Ecology and Production Management, Nanjing Agricultural University, Sanya, 572000, China
- China- Kenya Belt and Road Joint Laboratory on Crop Molecular Biology, Nanjing, 210095, China
| | - Wenjun He
- Sanya Institute of Nanjing Agriculture, Jiangsu Collaborative Innovation Center for Modern Crop Production, Key Laboratory of Crop Physiology Ecology and Production Management, Nanjing Agricultural University, Sanya, 572000, China
- China- Kenya Belt and Road Joint Laboratory on Crop Molecular Biology, Nanjing, 210095, China
| | - Dun Liu
- Sanya Institute of Nanjing Agriculture, Jiangsu Collaborative Innovation Center for Modern Crop Production, Key Laboratory of Crop Physiology Ecology and Production Management, Nanjing Agricultural University, Sanya, 572000, China
- China- Kenya Belt and Road Joint Laboratory on Crop Molecular Biology, Nanjing, 210095, China
| | - Hong Chen
- Sanya Institute of Nanjing Agriculture, Jiangsu Collaborative Innovation Center for Modern Crop Production, Key Laboratory of Crop Physiology Ecology and Production Management, Nanjing Agricultural University, Sanya, 572000, China
- China- Kenya Belt and Road Joint Laboratory on Crop Molecular Biology, Nanjing, 210095, China
| | - Lin Chen
- Sanya Institute of Nanjing Agriculture, Jiangsu Collaborative Innovation Center for Modern Crop Production, Key Laboratory of Crop Physiology Ecology and Production Management, Nanjing Agricultural University, Sanya, 572000, China
- China- Kenya Belt and Road Joint Laboratory on Crop Molecular Biology, Nanjing, 210095, China
| | - Yanfeng Ding
- Sanya Institute of Nanjing Agriculture, Jiangsu Collaborative Innovation Center for Modern Crop Production, Key Laboratory of Crop Physiology Ecology and Production Management, Nanjing Agricultural University, Sanya, 572000, China
- China- Kenya Belt and Road Joint Laboratory on Crop Molecular Biology, Nanjing, 210095, China
| | - Soulaiman Sakr
- Institut Agro, University of Angers, INRAE, IRHS, SFR 4207 QUASAV, Angers, 49000, France
| | - Ganghua Li
- Sanya Institute of Nanjing Agriculture, Jiangsu Collaborative Innovation Center for Modern Crop Production, Key Laboratory of Crop Physiology Ecology and Production Management, Nanjing Agricultural University, Sanya, 572000, China.
- China- Kenya Belt and Road Joint Laboratory on Crop Molecular Biology, Nanjing, 210095, China.
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Jiang Z, Zhang H, Gao S, Zhai H, He S, Zhao N, Liu Q. Genome-Wide Identification and Expression Analysis of the Sucrose Synthase Gene Family in Sweet Potato and Its Two Diploid Relatives. Int J Mol Sci 2023; 24:12493. [PMID: 37569874 PMCID: PMC10420203 DOI: 10.3390/ijms241512493] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2023] [Revised: 08/03/2023] [Accepted: 08/04/2023] [Indexed: 08/13/2023] Open
Abstract
Sucrose synthases (SUS; EC 2.4.1.13) encoded by a small multigene family are the central system of sucrose metabolism and have important implications for carbon allocation and energy conservation in nonphotosynthetic cells of plants. Though the SUS family genes (SUSs) have been identified in several plants, they have not been explored in sweet potato. In this research, nine, seven and seven SUSs were identified in the cultivated sweet potato (Ipomoea batatas, 2n = 6x = 90) as well as its two diploid wild relatives I. trifida (2n = 2x = 30) and I. triloba (2n = 2x = 30), respectively, and divided into three subgroups according to their phylogenetic relationships. Their protein physicochemical properties, chromosomal localization, phylogenetic relationship, gene structure, promoter cis-elements, protein interaction network and expression patterns were systematically analyzed. The results indicated that the SUS gene family underwent segmental and tandem duplications during its evolution. The SUSs were highly expressed in sink organs. The IbSUSs especially IbSUS2, IbSUS5 and IbSUS7 might play vital roles in storage root development and starch biosynthesis. The SUSs could also respond to drought and salt stress responses and take part in hormone crosstalk. This work provides new insights for further understanding the functions of SUSs and candidate genes for improving yield, starch content, and abiotic stress tolerance in sweet potatoes.
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Affiliation(s)
| | | | | | | | | | | | - Qingchang Liu
- Key Laboratory of Sweetpotato Biology and Biotechnology, Ministry of Agriculture and Rural Affairs/Beijing Key Laboratory of Crop Genetic Improvement/Laboratory of Crop Heterosis and Utilization, Ministry of Education, College of Agronomy & Biotechnology, China Agricultural University, Beijing 100193, China; (Z.J.); (H.Z.); (S.G.); (H.Z.); (S.H.); (N.Z.)
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Chen J, Pan B, Li Z, Xu Y, Cao X, Jia J, Shen H, Sun L. Fruit shape loci sun, ovate, fs8.1 and their interactions affect seed size and shape in tomato. FRONTIERS IN PLANT SCIENCE 2023; 13:1091639. [PMID: 36714752 PMCID: PMC9879704 DOI: 10.3389/fpls.2022.1091639] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/07/2022] [Accepted: 12/22/2022] [Indexed: 06/18/2023]
Abstract
Seed size and shape are not only critical for plant reproduction and dispersal, but also important agronomic traits. Tomato fruit shape loci sun, ovate and fs8.1 regulate the morphology of fruit, flower, leaf and stem, and recently their functions in seed morphogenesis have also been noticed. However, mechanism underlying seed morphology variation has not been systematically investigated yet. Thus, using the near isogenic lines (NILs) harboring one, two or three of the fruit shape loci, histological, physiological and transcriptional bases of seed morphology change have been studied. sun and ovate showed potential abilities in decreasing seed size, whereas, fs8.1 had a potential ability in increasing this parameter. Interactions between two loci and the interaction among three loci all led to significant decrease of seed size. All the loci significantly down-regulated seed shape index (SSI), except for sun/fs8.1 double NIL, which resulted in the reductions in both seed length and width and finally led to a decreased trend of SSI. Histologically, seed morphological changes were mainly attributed to the cell number variations. Transcriptional and physiological analyses discovered that phytohormone-, cytoskeleton- as well as sugar transportation- and degradation-related genes were involved in the regulation of seed morphology by the fruit shape loci.
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Affiliation(s)
- Jie Chen
- College of Horticulture, China Agricultural University, Beijing, China
- Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, Department of Vegetable Science, College of Horticulture, China Agricultural University, Beijing, China
| | - Bingqing Pan
- College of Horticulture, China Agricultural University, Beijing, China
- Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, Department of Vegetable Science, College of Horticulture, China Agricultural University, Beijing, China
| | - Zixiong Li
- College of Horticulture, China Agricultural University, Beijing, China
- Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, Department of Vegetable Science, College of Horticulture, China Agricultural University, Beijing, China
| | - Yue Xu
- College of Horticulture, China Agricultural University, Beijing, China
- Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, Department of Vegetable Science, College of Horticulture, China Agricultural University, Beijing, China
| | - Xiaomeng Cao
- College of Horticulture, China Agricultural University, Beijing, China
- Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, Department of Vegetable Science, College of Horticulture, China Agricultural University, Beijing, China
| | - Jingjing Jia
- College of Horticulture, China Agricultural University, Beijing, China
- Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, Department of Vegetable Science, College of Horticulture, China Agricultural University, Beijing, China
| | - Huolin Shen
- College of Horticulture, China Agricultural University, Beijing, China
- Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, Department of Vegetable Science, College of Horticulture, China Agricultural University, Beijing, China
| | - Liang Sun
- College of Horticulture, China Agricultural University, Beijing, China
- Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, Department of Vegetable Science, College of Horticulture, China Agricultural University, Beijing, China
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Wu M, Su H, Li C, Fu Z, Wu F, Yang J, Wang L. Effects of foliar application of single-walled carbon nanotubes on carbohydrate metabolism in crabapple plants. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2023; 194:214-222. [PMID: 36427383 DOI: 10.1016/j.plaphy.2022.11.023] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2022] [Revised: 11/04/2022] [Accepted: 11/16/2022] [Indexed: 06/16/2023]
Abstract
Carbon nanotubes (CNTs) regulate growth in many plants. Carbohydrates provide energy and carbon skeleton for cell growth. However, how CNTs influence plant carbohydrate metabolism remains largely unknown. For a comprehensive understanding the response of carbohydrate metabolism and accumulation in leaves of crabapple (Malus hupehensis Rehd) to single-walled carbon nanotubes (SWCNTs), the expression of key enzymes and genes involved in apple sugar metabolism was investigated. In this report, TEM showed that SWCNTs particles were absorbed in apple leaf. Foliar application of 10 and 20 mg/L SWCNTs promoted chlorophyll content, net photosynthetic rate, stomatal conductance and transpiration rate. SWCNTs up-regulate the activity of aldose-6-phosphate reductase (A6PR), accompanied by increased concentration of photosynthetic assimilate‒sorbitol. However, the activities of sucrose phosphate synthase (SPS) and the accumulation of sucrose did not change significantly in SWCNTs-sprayed apple leaves compared with the control. In addition, the activities of photoassimilate degradation enzyme (sorbitol dehydrogenase, SDH; sucrose synthase, SUSY; neutral invertase, NINV) and hexose degradation enzyme (fructokinase, FRK; hexokinase, HK) were higher in SWCNTs-treated apple leaves than that in the control leaves. Quantitative real-time polymerase chain reaction (qRT‒PCR) results indicated that the expression of genes associated with sugar metabolism changed significantly after SWCNTs application. Taken together, we propose that spraying apple leaves with 10 and 20 mg/L SWCNTs can improve photosynthetic activity and accelerate carbohydrate metabolism in apple leaves. Our results provide insight into understanding the biological effects of CNTs in plants and are valuable for continued use of SWCNTs in agri-nanotechnology.
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Affiliation(s)
- Mingqi Wu
- College of life Sciences, Ludong Universtiy, Yantai, 264025, PR China
| | - Hongyan Su
- Key Laboratory of Molecular Module-Based Breeding of High Yield and Abiotic Resistant Plants in Universities of Shandong/College of Agriculture, Ludong Universtiy, Yantai, 264025, PR China; The Institute of Ecological Garden, Ludong University, Yantai, 264025, PR China
| | - Chuanshou Li
- Key Laboratory of Molecular Module-Based Breeding of High Yield and Abiotic Resistant Plants in Universities of Shandong/College of Agriculture, Ludong Universtiy, Yantai, 264025, PR China
| | - Zhishun Fu
- Key Laboratory of Molecular Module-Based Breeding of High Yield and Abiotic Resistant Plants in Universities of Shandong/College of Agriculture, Ludong Universtiy, Yantai, 264025, PR China
| | - Fanlin Wu
- Key Laboratory of Molecular Module-Based Breeding of High Yield and Abiotic Resistant Plants in Universities of Shandong/College of Agriculture, Ludong Universtiy, Yantai, 264025, PR China
| | - Jingjing Yang
- Key Laboratory of Molecular Module-Based Breeding of High Yield and Abiotic Resistant Plants in Universities of Shandong/College of Agriculture, Ludong Universtiy, Yantai, 264025, PR China.
| | - Lei Wang
- College of life Sciences, Ludong Universtiy, Yantai, 264025, PR China.
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Zhang D, Guo W, Wang T, Wang Y, Le L, Xu F, Wu Y, Wuriyanghan H, Sung ZR, Pu L. RNA 5-Methylcytosine Modification Regulates Vegetative Development Associated with H3K27 Trimethylation in Arabidopsis. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2022; 10:e2204885. [PMID: 36382558 PMCID: PMC9811455 DOI: 10.1002/advs.202204885] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/24/2022] [Revised: 10/12/2022] [Indexed: 06/16/2023]
Abstract
Methylating RNA post-transcriptionally is emerging as a significant mechanism of gene regulation in eukaryotes. The crosstalk between RNA methylation and histone modification is critical for chromatin state and gene expression in mammals. However, it is not well understood mechanistically in plants. Here, the authors report a genome-wide correlation between RNA 5-cytosine methylation (m5 C) and histone 3 lysine27 trimethylation (H3K27me3) in Arabidopsis. The plant-specific Polycomb group (PcG) protein EMBRYONIC FLOWER1 (EMF1) plays dual roles as activators or repressors. Transcriptome-wide RNA m5 C profiling revealed that m5 C peaks are mostly enriched in chromatin regions that lacked H3K27me3 in both wild type and emf1 mutants. EMF1 repressed the expression of m5 C methyltransferase tRNA specific methyltransferase 4B (TRM4B) through H3K4me3, independent of PcG-mediated H3K27me3 mechanism. The 5-Cytosine methylation on targets is increased in emf1 mutants, thereby decreased the mRNA transcripts of photosynthesis and chloroplast genes. In addition, impairing EMF1 activity reduced H3K27me3 levels of PcG targets, such as starch genes, which are de-repressed in emf1 mutants. Both EMF1-mediated promotion and repression of gene activities via m5 C and H3K27me3 are required for normal vegetative growth. Collectively, t study reveals a previously undescribed epigenetic mechanism of RNA m5 C modifications and histone modifications to regulate gene expression in eukaryotes.
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Affiliation(s)
- Daolei Zhang
- Biotechnology Research InstituteChinese Academy of Agricultural SciencesBeijing100081P. R. China
- School of Life ScienceInner Mongolia UniversityHohhot010021P. R. China
| | - Weijun Guo
- Biotechnology Research InstituteChinese Academy of Agricultural SciencesBeijing100081P. R. China
| | - Ting Wang
- Biotechnology Research InstituteChinese Academy of Agricultural SciencesBeijing100081P. R. China
- Shangrao Normal UniversityShangrao334001P. R. China
| | - Yifan Wang
- Biotechnology Research InstituteChinese Academy of Agricultural SciencesBeijing100081P. R. China
| | - Liang Le
- Biotechnology Research InstituteChinese Academy of Agricultural SciencesBeijing100081P. R. China
| | - Fan Xu
- Biotechnology Research InstituteChinese Academy of Agricultural SciencesBeijing100081P. R. China
| | - Yue Wu
- Biotechnology Research InstituteChinese Academy of Agricultural SciencesBeijing100081P. R. China
| | - Hada Wuriyanghan
- School of Life ScienceInner Mongolia UniversityHohhot010021P. R. China
| | - Zinmay Renee Sung
- Department of Plant and Microbial BiologyUniversity of CaliforniaBerkeleyCA94720USA
| | - Li Pu
- Biotechnology Research InstituteChinese Academy of Agricultural SciencesBeijing100081P. R. China
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9
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Asati R, Tripathi MK, Tiwari S, Yadav RK, Tripathi N. Molecular Breeding and Drought Tolerance in Chickpea. LIFE (BASEL, SWITZERLAND) 2022; 12:life12111846. [PMID: 36430981 PMCID: PMC9698494 DOI: 10.3390/life12111846] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/04/2022] [Revised: 11/05/2022] [Accepted: 11/07/2022] [Indexed: 11/16/2022]
Abstract
Cicer arietinum L. is the third greatest widely planted imperative pulse crop worldwide, and it belongs to the Leguminosae family. Drought is the utmost common abiotic factor on plants, distressing their water status and limiting their growth and development. Chickpea genotypes have the natural ability to fight drought stress using certain strategies viz., escape, avoidance and tolerance. Assorted breeding methods, including hybridization, mutation, and marker-aided breeding, genome sequencing along with omics approaches, could be used to improve the chickpea germplasm lines(s) against drought stress. Root features, for instance depth and root biomass, have been recognized as the greatest beneficial morphological factors for managing terminal drought tolerance in the chickpea. Marker-aided selection, for example, is a genomics-assisted breeding (GAB) strategy that can considerably increase crop breeding accuracy and competence. These breeding technologies, notably marker-assisted breeding, omics, and plant physiology knowledge, underlined the importance of chickpea breeding and can be used in future crop improvement programmes to generate drought-tolerant cultivars(s).
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Affiliation(s)
- Ruchi Asati
- Department of Genetics & Plant Breeding, College of Agriculture, Rajmata Vijayaraje Scindia Krishi Vishwa Vidyalaya, Gwalior 474002, India
| | - Manoj Kumar Tripathi
- Department of Genetics & Plant Breeding, College of Agriculture, Rajmata Vijayaraje Scindia Krishi Vishwa Vidyalaya, Gwalior 474002, India
- Department of Plant Molecular Biology & Biotechnology, College of Agriculture, Rajmata Vijayaraje Scindia Krishi Vishwa Vidyalaya, Gwalior 474002, India
- Correspondence: (M.K.T.); (N.T.)
| | - Sushma Tiwari
- Department of Genetics & Plant Breeding, College of Agriculture, Rajmata Vijayaraje Scindia Krishi Vishwa Vidyalaya, Gwalior 474002, India
- Department of Plant Molecular Biology & Biotechnology, College of Agriculture, Rajmata Vijayaraje Scindia Krishi Vishwa Vidyalaya, Gwalior 474002, India
| | - Rakesh Kumar Yadav
- Department of Genetics & Plant Breeding, College of Agriculture, Rajmata Vijayaraje Scindia Krishi Vishwa Vidyalaya, Gwalior 474002, India
| | - Niraj Tripathi
- Directorate of Research Services, Jawaharlal Nehru Agricultural University, Jabalpur 482004, India
- Correspondence: (M.K.T.); (N.T.)
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10
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Bernardini C, Santi S, Mian G, Levy A, Buoso S, Suh JH, Wang Y, Vincent C, van Bel AJE, Musetti R. Increased susceptibility to Chrysanthemum Yellows phytoplasma infection in Atcals7ko plants is accompanied by enhanced expression of carbohydrate transporters. PLANTA 2022; 256:43. [PMID: 35842878 PMCID: PMC9288947 DOI: 10.1007/s00425-022-03954-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2022] [Accepted: 06/27/2022] [Indexed: 05/19/2023]
Abstract
Loss of CALS7 appears to confer increased susceptibility to phytoplasma infection in Arabidopsis, altering expression of genes involved in sugar metabolism and membrane transport. Callose deposition around sieve pores, under control of callose synthase 7 (CALS7), has been interpreted as a mechanical response to limit pathogen spread in phytoplasma-infected plants. Wild-type and Atcals7ko mutants were, therefore, employed to unveil the mode of involvement of CALS7 in the plant's response to phytoplasma infection. The fresh weights of healthy and CY-(Chrysanthemum Yellows) phytoplasma-infected Arabidopsis wild type and mutant plants indicated two superimposed effects of the absence of CALS7: a partial impairment of photo-assimilate transport and a stimulated phytoplasma proliferation as illustrated by a significantly increased phytoplasma titre in Atcal7ko mutants. Further studies solely dealt with the effects of CALS7 absence on phytoplasma growth. Phytoplasma infection affected sieve-element substructure to a larger extent in mutants than in wild-type plants, which was also true for the levels of some free carbohydrates. Moreover, infection induced a similar upregulation of gene expression of enzymes involved in sucrose cleavage (AtSUS5, AtSUS6) and transmembrane transport (AtSWEET11) in mutants and wild-type plants, but an increased gene expression of carbohydrate transmembrane transporters (AtSWEET12, AtSTP13, AtSUC3) in infected mutants only. It remains still unclear how the absence of AtCALS7 leads to gene upregulation and how an increased intercellular mobility of carbohydrates and possibly effectors contributes to a higher susceptibility. It is also unclear if modified sieve-pore structures in mutants allow a better spread of phytoplasmas giving rise to higher titre.
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Affiliation(s)
- Chiara Bernardini
- Department of Agricultural, Food, Environmental and Animal Sciences, University of Udine, via delle Scienze, 206, 33100, Udine, Italy
| | - Simonetta Santi
- Department of Agricultural, Food, Environmental and Animal Sciences, University of Udine, via delle Scienze, 206, 33100, Udine, Italy
| | - Giovanni Mian
- Department of Agricultural, Food, Environmental and Animal Sciences, University of Udine, via delle Scienze, 206, 33100, Udine, Italy
| | - Amit Levy
- Department of Plant Pathology, Citrus Research and Education Center, University of Florida, 700 Experiment Station Rd, Lake Alfred, FL, 33850, USA
| | - Sara Buoso
- Department of Agricultural, Food, Environmental and Animal Sciences, University of Udine, via delle Scienze, 206, 33100, Udine, Italy
| | - Joon Hyuk Suh
- Department of Food Science and Human Nutrition, Citrus Research and Education Center, University of Florida, 700 Experiment Station Rd, Lake Alfred, FL, 33850, USA
| | - Yu Wang
- Department of Food Science and Human Nutrition, Citrus Research and Education Center, University of Florida, 700 Experiment Station Rd, Lake Alfred, FL, 33850, USA
| | - Christopher Vincent
- Horticultural Sciences Department, Citrus Research and Education Center, University of Florida, 700 Experiment Station Rd, Lake Alfred, FL, 33850, USA
| | - Aart J E van Bel
- Institute of Phytopathology, Justus-Liebig University, Heinrich-Buff-Ring 26-32, 35392, Giessen, Germany
| | - Rita Musetti
- Department of Land, Environment, Agriculture and Forestry (TESAF), Università di Padova, via dell' Università, 16, 35020, Legnaro, PD, Italy.
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11
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Sergeeva EM, Larichev KT, Salina EA, Kochetov AV. Starch metabolism in potato <i>Solanum tuberosum</i> L. Vavilovskii Zhurnal Genet Selektsii 2022; 26:250-263. [PMID: 35774362 PMCID: PMC9168746 DOI: 10.18699/vjgb-22-32] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2021] [Revised: 12/20/2021] [Accepted: 12/20/2021] [Indexed: 11/19/2022] Open
Abstract
Starch is a major storage carbohydrate in plants. It is an important source of calories in the human and animal diet. Also, it is widely used in various industries. Native starch consists of water-insoluble semicrystalline granules formed by natural glucose polymers amylose and amylopectin. The physicochemical properties of starch are determined by the amylose:amylopectin ratio in the granule and degrees of their polymerization and phosphorylation. Potato Solanum tuberosum L. is one of the main starch-producing crops. Growing industrial needs necessitate the breeding of plant varieties with increased starch content and specified starch properties. This task demands detailed information on starch metabolism in the producing plant. It is a complex process, requiring the orchestrated work of many enzymes, transporter and targeting proteins, transcription factors, and other regulators. Two types of starch are recognized with regard to their biological functions. Transitory starch is synthesized in chloroplasts of photosynthetic organs and degraded in the absence of light, providing carbohydrates for cell needs. Storage starch is synthesized and stored in amyloplasts of storage organs: grains and tubers. The main enzymatic reactions of starch biosynthesis and degradation, as well as carbohydrate transport and metabolism, are well known in the case of transitory starch of the model plant Arabidopsis thaliana. Less is known about features of starch metabolism in storage organs, in particular, potato tubers. Several issues remain obscure: the roles of enzyme isoforms and different regulatory factors in tissues at various plant developmental stages and under different environmental conditions; alternative enzymatic processes; targeting and transport proteins. In this review, the key enzymatic reactions of plant carbohydrate metabolism, transitory and storage starch biosynthesis,
and starch degradation are discussed, and features specific for potato are outlined. Attention is also paid to the
known regulatory factors affecting starch metabolism
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Affiliation(s)
- E. M. Sergeeva
- Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences
| | - K. T. Larichev
- Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences
| | - E. A. Salina
- Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences
| | - A. V. Kochetov
- Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences
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12
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Fünfgeld MMFF, Wang W, Ishihara H, Arrivault S, Feil R, Smith AM, Stitt M, Lunn JE, Niittylä T. Sucrose synthases are not involved in starch synthesis in Arabidopsis leaves. NATURE PLANTS 2022; 8:574-582. [PMID: 35484201 PMCID: PMC9122829 DOI: 10.1038/s41477-022-01140-y] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2021] [Accepted: 03/18/2022] [Indexed: 05/11/2023]
Abstract
Many plants accumulate transitory starch reserves in their leaves during the day to buffer their carbohydrate supply against fluctuating light conditions, and to provide carbon and energy for survival at night. It is universally accepted that transitory starch is synthesized from ADP-glucose (ADPG) in the chloroplasts. However, the consensus that ADPG is made in the chloroplasts by ADPG pyrophosphorylase has been challenged by a controversial proposal that ADPG is made primarily in the cytosol, probably by sucrose synthase (SUS), and then imported into the chloroplasts. To resolve this long-standing controversy, we critically re-examined the experimental evidence that appears to conflict with the consensus pathway. We show that when precautions are taken to avoid artefactual changes during leaf sampling, Arabidopsis thaliana mutants that lack SUS activity in mesophyll cells (quadruple sus1234) or have no SUS activity (sextuple sus123456) have wild-type levels of ADPG and starch, while ADPG is 20 times lower in the pgm and adg1 mutants that are blocked in the consensus chloroplastic pathway of starch synthesis. We conclude that the ADPG needed for starch synthesis in leaves is synthesized primarily by ADPG pyrophosphorylase in the chloroplasts.
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Affiliation(s)
- Maximilian M F F Fünfgeld
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
- Luxembourg Institute of Health, Strassen, Luxembourg
| | - Wei Wang
- Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umeå Plant Science Centre, Umeå, Sweden
| | - Hirofumi Ishihara
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
- University of Helsinki, Helsinki, Finland
| | | | - Regina Feil
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | | | - Mark Stitt
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - John E Lunn
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany.
| | - Totte Niittylä
- Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umeå Plant Science Centre, Umeå, Sweden.
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13
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Dinant S, Le Hir R. Delving deeper into the link between sugar transport, sugar signaling, and vascular system development. PHYSIOLOGIA PLANTARUM 2022; 174:e13684. [PMID: 35396718 DOI: 10.1111/ppl.13684] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2022] [Revised: 03/31/2022] [Accepted: 04/06/2022] [Indexed: 06/14/2023]
Abstract
Plant growth and development rely on the transport and use of sugars produced during photosynthesis. Sugars have a dual function as nutrients and signal molecules in the cell. Many factors maintaining sugar homeostasis and signaling are now identified, but our understanding of the mechanisms involved in coordinating intracellular and intercellular sugar translocation is still limited. We also know little about the interplay between sugar transport and signaling and the formation of the vascular system, which controls long-distance sugar translocation. Sugar signaling has been proposed to play a role; however, evidence to support this hypothesis is still limited. Here, we exploited recent transcriptomics datasets produced in aerial organs of Arabidopsis to identify genes coding for sugar transporters or signaling components expressed in the vascular cells. We identified genes belonging to sugar transport and signaling for which no information is available regarding a role in vasculature development. In addition, the transcriptomics datasets obtained from sugar-treated Arabidopsis seedlings were used to assess the sugar-responsiveness of known genes involved in vascular differentiation. Interestingly, several key regulators of vascular development were found to be regulated by either sucrose or glucose. Especially CLE41, which controls the procambial cell fate, was oppositely regulated by sucrose or glucose in these datasets. Even if more experimental data are necessary to confirm these findings, this survey supports a link between sugar transport/signaling and vascular system development.
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Affiliation(s)
- Sylvie Dinant
- Université Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin (IJPB), Versailles, France
| | - Rozenn Le Hir
- Université Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin (IJPB), Versailles, France
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14
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Bacterial Inoculant and Sucrose Amendments Improve the Growth of Rheum palmatum L. by Reprograming Its Metabolite Composition and Altering Its Soil Microbial Community. Int J Mol Sci 2022; 23:ijms23031694. [PMID: 35163617 PMCID: PMC8835959 DOI: 10.3390/ijms23031694] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2022] [Revised: 01/25/2022] [Accepted: 01/26/2022] [Indexed: 01/29/2023] Open
Abstract
Rheum palmatum L. is an important traditional Chinese medicinal herb now in demand worldwide. Recently, the theoretical framework suggested that sucrose triggers colonization of PGPM (plant growth-promoting microbes) in the rhizosphere, but their interactions on the plant remain largely unknown. Here, we applied three concentrations of both Bacillus amyloliquefaciens EZ99 inoculant (1.0 × 105, 1.0 × 106, and 1.0 × 107 colony-forming units (CFU)/mL, denoted as LB, MB, and HB, respectively) and sucrose (0.15, 1.5, and 15 g/L, denoted as LS, MS, and HS, respectively) to investigate their co-effects on R. palmatum in a field experiment. The results showed that LB + MS (1.0 × 105 CFU/mL Bacillus + 1.5 g/L sucrose) and LB + LS (1.0 × 105 CFU/mL Bacillus + 0.15 g/L sucrose) treatments significantly increased root fresh weight (p ≤ 0.05). Metabolite analysis revealed that the treatment LB + LS significantly increased the relative content of major active components in rhubarb, namely anthraquinones and phenolic compounds, by 1.5% and 2.3%. Although high sucrose addition increased the activities of certain soil enzymes, the LB + LS treatment significantly increased total potassium (TK), whereas it decreased available potassium (AK), which facilitated the potassium utilization in rhizosphere soil. Furthermore, rhizosphere microbiomes revealed that fungal diversity was augmented in LB + LS treatment, in which the common causative fungal pathogen Fusarium spp. showed an effective suppression. Additionally, the redundancy analysis and Spearman correlations revealed a positive relationship of Sphingomonas associated with change in potassium bioavailability. Altogether, our findings suggest that the combined application of a bacterial inoculant and sucrose can improve the growth and quality of R. palmatum, and stimulate uptake of plant nutrients that contribute to alter the microbial community for biocontrol potential. Hence, this work not only has broad application prospects across economical plants, but also emphasizes agroecological practices for sustainable agriculture.
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15
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Liu Y, Vasina VV, Kraner ME, Peters WS, Sonnewald U, Knoblauch M. Proteomics of isolated sieve tubes from Nicotiana tabacum: sieve element-specific proteins reveal differentiation of the endomembrane system. Proc Natl Acad Sci U S A 2022; 119:e2112755119. [PMID: 34983847 PMCID: PMC8740716 DOI: 10.1073/pnas.2112755119] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/18/2021] [Indexed: 11/30/2022] Open
Abstract
Symplasmicly connected cells called sieve elements form a network of tubes in the phloem of vascular plants. Sieve elements have essential functions as they provide routes for photoassimilate distribution, the exchange of developmental signals, and the coordination of defense responses. Nonetheless, they are the least understood main type of plant cells. They are extremely sensitive, possess a reduced endomembrane system without Golgi apparatus, and lack nuclei and translation machineries, so that transcriptomics and similar techniques cannot be applied. Moreover, the analysis of phloem exudates as a proxy for sieve element composition is marred by methodological problems. We developed a simple protocol for the isolation of sieve elements from leaves and stems of Nicotiana tabacum at sufficient amounts for large-scale proteome analysis. By quantifying the enrichment of individual proteins in purified sieve element relative to bulk phloem preparations, proteins of increased likelyhood to function specifically in sieve elements were identified. To evaluate the validity of this approach, yellow fluorescent protein constructs of genes encoding three of the candidate proteins were expressed in plants. Tagged proteins occurred exclusively in sieve elements. Two of them, a putative cytochrome b561/ferric reductase and a reticulon-like protein, appeared restricted to segments of the endoplasmic reticulum (ER) that were inaccessible to green fluorescent protein dissolved in the ER lumen, suggesting a previously unknown differentiation of the endomembrane system in sieve elements. Evidently, our list of promising candidate proteins ( SI Appendix, Table S1) provides a valuable exploratory tool for sieve element biology.
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Affiliation(s)
- Yan Liu
- School of Biological Sciences, Washington State University, Pullman, WA 99154
| | - Viktoriya V Vasina
- School of Biological Sciences, Washington State University, Pullman, WA 99154
| | - Max E Kraner
- Division of Biochemistry, Department of Biology, Friedrich-Alexander-University Erlangen-Nuremberg, 91058 Erlangen, Germany
| | - Winfried S Peters
- School of Biological Sciences, Washington State University, Pullman, WA 99154
- Department of Biology, Purdue University Fort Wayne, Fort Wayne, IN 46835
| | - Uwe Sonnewald
- Division of Biochemistry, Department of Biology, Friedrich-Alexander-University Erlangen-Nuremberg, 91058 Erlangen, Germany
| | - Michael Knoblauch
- School of Biological Sciences, Washington State University, Pullman, WA 99154;
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16
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Paniagua C, Sinanaj B, Benitez-Alfonso Y. Plasmodesmata and their role in the regulation of phloem unloading during fruit development. CURRENT OPINION IN PLANT BIOLOGY 2021; 64:102145. [PMID: 34826657 PMCID: PMC8687135 DOI: 10.1016/j.pbi.2021.102145] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2021] [Revised: 10/19/2021] [Accepted: 10/21/2021] [Indexed: 05/08/2023]
Abstract
Fruit consumption is fundamental to a balanced diet. The contemporary challenge of maintaining a steady food supply to meet the demands of a growing population is driving the development of strategies to improve the production and nutritional quality of fruit. Plasmodesmata, the structures that mediate symplasmic transport between plant cells, play an important role in phloem unloading and distribution of sugars and signalling molecules into developing organs. Targeted modifications to the structures and functioning of plasmodesmata have the potential to improve fruit development; however, knowledge on the mechanisms underpinning plasmodesmata regulation in this context is scarce. In this review, we have compiled current knowledge on plasmodesmata and their structural characterisation during the development of fruit organs. We discuss key questions on phloem unloading, including the pathway shift from symplasmic to apoplastic that takes place during the onset of ripening as potential targets for improving fruit quality.
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Affiliation(s)
- Candelas Paniagua
- Centre for Plant Sciences, School of Biology, University of Leeds, Leeds, LS2 9JT, UK
| | - Besiana Sinanaj
- Centre for Plant Sciences, School of Biology, University of Leeds, Leeds, LS2 9JT, UK
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17
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Sanden NC, Schulz A. Stationary sieve element proteins. JOURNAL OF PLANT PHYSIOLOGY 2021; 266:153511. [PMID: 34537466 DOI: 10.1016/j.jplph.2021.153511] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2021] [Revised: 08/13/2021] [Accepted: 09/01/2021] [Indexed: 06/13/2023]
Abstract
Vascular plants use the phloem to move sugars and other molecules from source leaves to sink organs such as roots and fruits. Within the phloem, enucleate sieve elements provide the low-resistance pipe system that enable bulk flow of sap. In this review, we provide an overview of the highly specific protein machinery that localize to mature sieve elements without entering the phloem translocation stream. Generally, the proteins either maintain the flow, protect the sieve element against pathogens or transmit system wide signals. A notable exception is found in poppy, where part of the opium biosynthesis is compartmentalized in sieve elements. Biosynthesis of sieve element proteins happens either continuously in companion cell or transiently in immature sieve elements before nuclear disintegration. The latter population is translated during differentiation and stays functional without turnover during the entire lifespan of sieve elements. We discuss how protein longevity imposes some interesting restrictions on plants, especially in arborescent monocots with long living sieve elements.
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Affiliation(s)
- Niels Christian Sanden
- DynaMo Center, Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871, Frederiksberg C, Denmark; Section for Transport Biology, Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871, Frederiksberg C, Denmark
| | - Alexander Schulz
- DynaMo Center, Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871, Frederiksberg C, Denmark; Section for Transport Biology, Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871, Frederiksberg C, Denmark.
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18
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Gujjar RS, Roytrakul S, Chuekong W, Supaibulwatana K. A synthetic cytokinin influences the accumulation of leaf soluble sugars and sugar transporters, and enhances the drought adaptability in rice. 3 Biotech 2021; 11:369. [PMID: 34295609 DOI: 10.1007/s13205-021-02908-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2020] [Accepted: 06/24/2021] [Indexed: 12/27/2022] Open
Abstract
Oryza sativa cv. PTT1 (Pathumthani1) was treated with phenyl-urea-based synthetic cytokinin under drought stress. Soluble sugar contents were examined in rice flag leaves at tillering and grain-filling stages. The same leaf samples were used to analyze the differential abundance intensities of proteins related to metabolism and transport of soluble sugars, and the process of senescence. The results showed drought-induced accumulation of hexose sugars (glucose and fructose) in rice flag leaves, which could be corroborated with enhanced accumulation of MST8 under drought stress. On the other hand, cytokinin-treated plants maintained the normal contents of hexose sugar in their flag leaves under drought stress, alike well-watered plants. In the case of sucrose, cytokinin treatment reduced its accumulation at tillering stage, but the results were reversed at the grain-filling stage, where the cytokinin-treated plants maintained significantly higher contents of sucrose under drought stress. Growth stage dependent variations in sucrose contents corroborated with the accumulation of SPS (SPS1, SPS2, and SPS5) proteins, implicated in sucrose biosynthesis. In our study, among the proteins involved in sucrose transport, SUT1 transporter was induced by drought stress at both the growth stages, whereas SUT2 transporter accumulated equally in all the treatments. However, cytokinin treatment reversed the effect of drought on the accumulation of SUT1. Similarly, SWEET5, and SWEET13 proteins, which were induced by drought stress treatment, were inhibited by cytokinin treatment. However, the accumulation SWEET6, SWEET7, and SWEET15 was not influenced by the treatment of cytokinin in the flag leaves of rice. In addition, cytokinin treatment reduced the leaf wilting, enhanced the fresh weight and grain yield, and curtailed the accumulation of proteins involved in drought-induced senescence. In conclusion, the cytokinin treatment had a positive agro-economic impact on the rice plants and provided better drought adaptability.
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Affiliation(s)
- Ranjit Singh Gujjar
- Faculty of Science, Mahidol University, Rama VI Rd., Ratchathewi, Bangkok, 10400 Thailand
- Present Address: Division of Crop Improvement, Indian Institute of Sugarcane Research, Lucknow, 226002 India
| | - Sittiruk Roytrakul
- National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, Pathum Thani, 12120 Thailand
| | - Wannisa Chuekong
- Faculty of Science, Mahidol University, Rama VI Rd., Ratchathewi, Bangkok, 10400 Thailand
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Xu Q, Liesche J. Sugar export from Arabidopsis leaves: actors and regulatory strategies. JOURNAL OF EXPERIMENTAL BOTANY 2021; 72:5275-5284. [PMID: 34037757 DOI: 10.1093/jxb/erab241] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2021] [Accepted: 05/22/2021] [Indexed: 06/12/2023]
Abstract
Plant acclimation and stress responses depend on the dynamic optimization of carbon balance between source and sink organs. This optimization also applies to the leaf export rate of photosynthetically produced sugars. So far, investigations into the molecular mechanisms of how the rate is controlled have focused on sugar transporters responsible for loading sucrose into the phloem sieve element-companion cell complex of leaf veins. Here, we take a broader view of the various proteins with potential direct influence on the leaf sugar export rate in the model plant Arabidopsis thaliana, helped by the cell type-specific transcriptome data that have recently become available. Furthermore, we integrate current information on the regulation of these potential target proteins. Our analysis identifies putative control points and units of transcriptionally and post-transcriptionally co-regulated genes. Most notable is the potential regulatory unit of sucrose transporters (SUC2, SWEET11, SWEET12, and SUC4) and proton pumps (AHA3 and AVP1). Our analysis can guide future research aimed at understanding the regulatory network controlling leaf sugar export by providing starting points for characterizing regulatory strategies and identifying regulatory factors that link sugar export rate to the major signaling pathways.
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Affiliation(s)
- Qiyu Xu
- College of Life Sciences, Northwest A&F University, Yangling, China
- State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, China
- Biomass Energy Center for Arid and Semiarid Lands, Northwest A&F University, Yangling, China
| | - Johannes Liesche
- College of Life Sciences, Northwest A&F University, Yangling, China
- State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling, China
- Biomass Energy Center for Arid and Semiarid Lands, Northwest A&F University, Yangling, China
- Institute for Molecular Physiology, Heinrich Heine University Düsseldorf, Düsseldorf, Germany
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20
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Mathan J, Singh A, Ranjan A. Sucrose transport and metabolism control carbon partitioning between stem and grain in rice. JOURNAL OF EXPERIMENTAL BOTANY 2021; 72:4355-4372. [PMID: 33587747 DOI: 10.1093/jxb/erab066] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2020] [Accepted: 02/09/2021] [Indexed: 06/12/2023]
Abstract
Source-sink relationships are key to overall crop performance. Detailed understanding of the factors that determine source-sink dynamics is imperative for the balance of biomass and grain yield in crop plants. We investigated the differences in source-sink relationships between a cultivated rice, Oryza sativa cv. Nipponbare, and a wild rice, Oryza australiensis, which show striking differences in biomass and grain yield. Oryza australiensis, which accumulates a higher biomass, not only showed higher photosynthesis per unit leaf area but also exported more sucrose from leaves compared with Nipponbare. However, grain features and sugar content suggested limited sucrose mobilization to grains in the wild rice due to vasculature and sucrose transporter functions. Low cell wall invertase activity and high sucrose synthase cleavage activity followed by higher expression of cellulose synthase genes in O. australiensis stem indicated that it utilized photosynthates preferentially for the synthesis of structural carbohydrates, resulting in high biomass. In contrast, source-sink relationships favored high grain yield in Nipponbare via accumulation of transitory starch in the stem, due to higher expression of starch biosynthetic genes, which is mobilized to panicles at the grain filling stage. Thus, vascular features, sucrose transport, and functions of sugar metabolic enzymes explained the differences in source-sink relationships between Nipponbare and O. australiensis.
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Affiliation(s)
- Jyotirmaya Mathan
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India
| | - Anuradha Singh
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India
| | - Aashish Ranjan
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India
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21
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Konkina A, Klepadlo M, Lakehal A, Zein ZE, Krokida A, Botros M, Iakovidis M, Chernobavskiy P, Elfatih Zerroumda M, Tsanakas G, Petrakis N, Dourou AM, Kalaitzis P. An Arabidopsis Prolyl 4 Hydroxylase Is Involved in the Low Oxygen Response. FRONTIERS IN PLANT SCIENCE 2021; 12:637352. [PMID: 33790927 PMCID: PMC8006943 DOI: 10.3389/fpls.2021.637352] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/03/2020] [Accepted: 02/09/2021] [Indexed: 06/12/2023]
Abstract
Plant responses to flooding, submergence and waterlogging are important for adaptation to climate change environments. Therefore, the characterization of the molecular mechanisms activated under hypoxic and anoxic conditions might lead to low oxygen resilient crops. Although in mammalian systems prolyl 4 hydroxylases (P4Hs) are involved in the oxygen sensing pathway, their role in plants under low oxygen has not been extensively investigated. In this report, an Arabidopsis AtP4H3 T-DNA knock out mutant line showed higher sensitivity to anoxic treatment possibly due to lower induction of the fermentation pathway genes, ADH and PDC1, and of sucrose synthases, SUS1 and SUS4. This sensitivity to anoxia was accompanied by lower protein levels of AGPs-bound epitopes such as LM14 in the mutant line and induction of extensins-bound epitopes, while the expression levels of the majority of the AGPs genes were stable throughout a low oxygen time course. The lower AGPs content might be related to altered frequency of proline hydroxylation occurrence in the p4h3 line. These results indicate active involvement of proline hydroxylation, a post-translational modification, to low oxygen response in Arabidopsis.
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22
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Pignocchi C, Ivakov A, Feil R, Trick M, Pike M, Wang TL, Lunn JE, Smith AM. Restriction of cytosolic sucrose hydrolysis profoundly alters development, metabolism, and gene expression in Arabidopsis roots. JOURNAL OF EXPERIMENTAL BOTANY 2021; 72:1850-1863. [PMID: 33378456 PMCID: PMC7921298 DOI: 10.1093/jxb/eraa581] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/06/2020] [Accepted: 12/10/2020] [Indexed: 05/28/2023]
Abstract
Plant roots depend on sucrose imported from leaves as the substrate for metabolism and growth. Sucrose and hexoses derived from it are also signalling molecules that modulate growth and development, but the importance for signalling of endogenous changes in sugar levels is poorly understood. We report that reduced activity of cytosolic invertase, which converts sucrose to hexoses, leads to pronounced metabolic, growth, and developmental defects in roots of Arabidopsis (Arabidopsis thaliana) seedlings. In addition to altered sugar and downstream metabolite levels, roots of cinv1 cinv2 mutants have reduced elongation rates, cell and meristem size, abnormal meristematic cell division patterns, and altered expression of thousands of genes of diverse functions. Provision of exogenous glucose to mutant roots repairs relatively few of the defects. The extensive transcriptional differences between mutant and wild-type roots have hallmarks of both high sucrose and low hexose signalling. We conclude that the mutant phenotype reflects both low carbon availability for metabolism and growth and complex sugar signals derived from elevated sucrose and depressed hexose levels in the cytosol of mutant roots. Such reciprocal changes in endogenous sucrose and hexose levels potentially provide rich information about sugar status that translates into flexible adjustments of growth and development.
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Affiliation(s)
| | - Alexander Ivakov
- Max Planck Institute of Molecular Plant Physiology, Wissenschaftspark Potsdam-Golm, Am Mühlenberg, Potsdam-Golm, Germany
| | - Regina Feil
- Max Planck Institute of Molecular Plant Physiology, Wissenschaftspark Potsdam-Golm, Am Mühlenberg, Potsdam-Golm, Germany
| | - Martin Trick
- John Innes Centre, Norwich Research Park, Norwich, UK
| | - Marilyn Pike
- John Innes Centre, Norwich Research Park, Norwich, UK
| | - Trevor L Wang
- John Innes Centre, Norwich Research Park, Norwich, UK
| | - John E Lunn
- Max Planck Institute of Molecular Plant Physiology, Wissenschaftspark Potsdam-Golm, Am Mühlenberg, Potsdam-Golm, Germany
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23
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Ho LH, Lee YI, Hsieh SY, Lin IS, Wu YC, Ko HY, Klemens PA, Neuhaus HE, Chen YM, Huang TP, Yeh CH, Guo WJ. GeSUT4 mediates sucrose import at the symbiotic interface for carbon allocation of heterotrophic Gastrodia elata (Orchidaceae). PLANT, CELL & ENVIRONMENT 2021; 44:20-33. [PMID: 32583877 DOI: 10.1111/pce.13833] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2020] [Revised: 06/17/2020] [Accepted: 06/19/2020] [Indexed: 06/11/2023]
Abstract
Gastrodia elata, a fully mycoheterotrophic orchid without photosynthetic ability, only grows symbiotically with the fungus Armillaria. The mechanism of carbon distribution in this mycoheterotrophy is unknown. We detected high sucrose concentrations in all stages of Gastrodia tubers, suggesting sucrose may be the major sugar transported between fungus and orchid. Thick symplasm-isolated wall interfaces in colonized and adjacent large cells implied involvement of sucrose importers. Two sucrose transporter (SUT)-like genes, GeSUT4 and GeSUT3, were identified that were highly expressed in young Armillaria-colonized tubers. Yeast complementation and isotope tracer experiments confirmed that GeSUT4 functioned as a high-affinity sucrose-specific proton-dependent importer. Plasma-membrane/tonoplast localization of GeSUT4-GFP fusions and high RNA expression of GeSUT4 in symbiotic and large cells indicated that GeSUT4 likely functions in active sucrose transport for intercellular allocation and intracellular homeostasis. Transgenic Arabidopsis overexpressing GeSUT4 had larger leaves but were sensitive to excess sucrose and roots were colonized with fewer mutualistic Bacillus, supporting the role of GeSUT4 in regulating sugar allocation. This is not only the first documented carbon import system in a mycoheterotrophic interaction but also highlights the evolutionary importance of sucrose transporters for regulation of carbon flow in all types of plant-microbe interactions.
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Affiliation(s)
- Li-Hsuan Ho
- Department of Biotechnology and Bioindustry Sciences, National Cheng Kung University, Tainan, Taiwan, Republic of China
| | - Yung-I Lee
- Biology Department, National Museum of Natural Science, Taichung, Taiwan, Republic of China
| | - Shu-Ying Hsieh
- Department of Biotechnology and Bioindustry Sciences, National Cheng Kung University, Tainan, Taiwan, Republic of China
| | - I-Shiuan Lin
- Department of Biotechnology and Bioindustry Sciences, National Cheng Kung University, Tainan, Taiwan, Republic of China
| | - Yun-Chien Wu
- Department of Biotechnology and Bioindustry Sciences, National Cheng Kung University, Tainan, Taiwan, Republic of China
| | - Han-Yu Ko
- Department of Biotechnology and Bioindustry Sciences, National Cheng Kung University, Tainan, Taiwan, Republic of China
| | - Patrick A Klemens
- Plant Physiology, University of Kaiserslautern, Kaiserslautern, Germany
| | | | - Yi-Min Chen
- Department of Biotechnology and Bioindustry Sciences, National Cheng Kung University, Tainan, Taiwan, Republic of China
| | - Tzu-Pi Huang
- Department of Plant Pathology, National Chung Hsing University, Taichung, Taiwan, Republic of China
| | - Chih-Hsin Yeh
- Taoyuan District Agricultural Research and Extension Station, Council of Agriculture, Taoyuan, Taiwan, Republic of China
| | - Woei-Jiun Guo
- Department of Biotechnology and Bioindustry Sciences, National Cheng Kung University, Tainan, Taiwan, Republic of China
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