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For: Hayashi Y, Kajikawa M, Matsumoto T, Okada N. Mechanism by which a LINE protein recognizes its 3' tail RNA. Nucleic Acids Res 2014;42:10605-17. [PMID: 25143533 PMCID: PMC4176376 DOI: 10.1093/nar/gku753] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]  Open
Number Cited by Other Article(s)
1
Rodríguez-Vargas A, Collins K. Distinct and overlapping RNA determinants for binding and target-primed reverse transcription by Bombyx mori R2 retrotransposon protein. Nucleic Acids Res 2024;52:6571-6585. [PMID: 38499488 PMCID: PMC11194090 DOI: 10.1093/nar/gkae194] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2023] [Revised: 02/08/2024] [Accepted: 03/09/2024] [Indexed: 03/20/2024]  Open
2
Hartig N, Seibt KM, Heitkam T. How to start a LINE: 5' switching rejuvenates LINE retrotransposons in tobacco and related Nicotiana species. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2023. [PMID: 36965091 DOI: 10.1111/tpj.16208] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2022] [Revised: 02/10/2023] [Accepted: 02/19/2023] [Indexed: 06/18/2023]
3
Lessons Learned and Yet-to-Be Learned on the Importance of RNA Structure in SARS-CoV-2 Replication. Microbiol Mol Biol Rev 2022;86:e0005721. [PMID: 35862724 PMCID: PMC9491204 DOI: 10.1128/mmbr.00057-21] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]  Open
4
Jiang JC, Rothnagel JA, Upton KR. Widespread Exaptation of L1 Transposons for Transcription Factor Binding in Breast Cancer. Int J Mol Sci 2021;22:5625. [PMID: 34070697 PMCID: PMC8199441 DOI: 10.3390/ijms22115625] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2021] [Revised: 05/18/2021] [Accepted: 05/20/2021] [Indexed: 12/29/2022]  Open
5
Seibt KM, Schmidt T, Heitkam T. The conserved 3' Angio-domain defines a superfamily of short interspersed nuclear elements (SINEs) in higher plants. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2020;101:681-699. [PMID: 31610059 DOI: 10.1111/tpj.14567] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/16/2019] [Revised: 09/13/2019] [Accepted: 09/17/2019] [Indexed: 06/10/2023]
6
Shein A, Zaikin A, Poptsova M. Recognition of 3'-end L1, Alu, processed pseudogenes, and mRNA stem-loops in the human genome using sequence-based and structure-based machine-learning models. Sci Rep 2019;9:7211. [PMID: 31076573 PMCID: PMC6510757 DOI: 10.1038/s41598-019-43403-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2019] [Accepted: 04/24/2019] [Indexed: 11/09/2022]  Open
7
Otsu M, Kawai G. Distinct RNA recognition mechanisms in closely related LINEs from zebrafish. NUCLEOSIDES NUCLEOTIDES & NUCLEIC ACIDS 2019;38:294-304. [PMID: 30942141 DOI: 10.1080/15257770.2018.1527348] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
8
Nagasawa T, Kawaguchi M, Yano T, Isoyama S, Yasumasu S, Okabe M. Translocation of promoter-conserved hatching enzyme genes with intron-loss provides a new insight in the role of retrocopy during teleostean evolution. Sci Rep 2019;9:2448. [PMID: 30792427 PMCID: PMC6385490 DOI: 10.1038/s41598-019-38693-6] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2018] [Accepted: 12/17/2018] [Indexed: 11/12/2022]  Open
9
Nishiyama E, Ohshima K. Cross-Kingdom Commonality of a Novel Insertion Signature of RTE-Related Short Retroposons. Genome Biol Evol 2018;10:1471-1483. [PMID: 29850801 PMCID: PMC6007223 DOI: 10.1093/gbe/evy098] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/18/2018] [Indexed: 12/15/2022]  Open
10
Current Perspectives of Telomerase Structure and Function in Eukaryotes with Emerging Views on Telomerase in Human Parasites. Int J Mol Sci 2018;19:ijms19020333. [PMID: 29364142 PMCID: PMC5855555 DOI: 10.3390/ijms19020333] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2017] [Revised: 01/10/2018] [Accepted: 01/17/2018] [Indexed: 12/11/2022]  Open
11
Arkhipova IR, Yushenova IA, Rodriguez F. Giant Reverse Transcriptase-Encoding Transposable Elements at Telomeres. Mol Biol Evol 2017;34:2245-2257. [PMID: 28575409 PMCID: PMC5850863 DOI: 10.1093/molbev/msx159] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]  Open
12
Grechishnikova DA, Poptsova MS. The Physical and Geometric Properties of Human Transposon Stem–Loop Structures under Natural Selection. Biophysics (Nagoya-shi) 2017. [DOI: 10.1134/s0006350917060070] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]  Open
13
Otsu M, Kajikawa M, Okada N, Kawai G. Solution structure of a reverse transcriptase recognition site of a LINE RNA from zebrafish. J Biochem 2017;162:279-285. [PMID: 28431120 DOI: 10.1093/jb/mvx026] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2017] [Accepted: 03/23/2017] [Indexed: 11/14/2022]  Open
14
Sahakyan AB, Murat P, Mayer C, Balasubramanian S. G-quadruplex structures within the 3' UTR of LINE-1 elements stimulate retrotransposition. Nat Struct Mol Biol 2017;24:243-247. [PMID: 28134931 DOI: 10.1038/nsmb.3367] [Citation(s) in RCA: 51] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2016] [Accepted: 12/22/2016] [Indexed: 12/28/2022]
15
Conserved 3' UTR stem-loop structure in L1 and Alu transposons in human genome: possible role in retrotransposition. BMC Genomics 2016;17:992. [PMID: 27914481 PMCID: PMC5135761 DOI: 10.1186/s12864-016-3344-4] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2016] [Accepted: 11/25/2016] [Indexed: 02/06/2023]  Open
16
Podlevsky JD, Chen JJL. Evolutionary perspectives of telomerase RNA structure and function. RNA Biol 2016;13:720-32. [PMID: 27359343 PMCID: PMC4993307 DOI: 10.1080/15476286.2016.1205768] [Citation(s) in RCA: 71] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]  Open
17
Huang W, Yang J, Ren J, Tang J. Expression of PTEN and KAI1 tumor suppressor genes in pancreatic carcinoma and its association with different pathological factors. Oncol Lett 2016;11:559-562. [PMID: 26870247 PMCID: PMC4727065 DOI: 10.3892/ol.2015.3932] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2015] [Accepted: 11/17/2015] [Indexed: 11/06/2022]  Open
18
Nishihara H, Plazzi F, Passamonti M, Okada N. MetaSINEs: Broad Distribution of a Novel SINE Superfamily in Animals. Genome Biol Evol 2016;8:528-39. [PMID: 26872770 PMCID: PMC4824008 DOI: 10.1093/gbe/evw029] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]  Open
19
A 3' Poly(A) Tract Is Required for LINE-1 Retrotransposition. Mol Cell 2015;60:728-741. [PMID: 26585388 DOI: 10.1016/j.molcel.2015.10.012] [Citation(s) in RCA: 96] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2015] [Revised: 09/30/2015] [Accepted: 10/06/2015] [Indexed: 11/22/2022]
20
Doucet AJ, Droc G, Siol O, Audoux J, Gilbert N. U6 snRNA Pseudogenes: Markers of Retrotransposition Dynamics in Mammals. Mol Biol Evol 2015;32:1815-32. [PMID: 25761766 PMCID: PMC4476161 DOI: 10.1093/molbev/msv062] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]  Open
21
Noll A, Raabe CA, Churakov G, Brosius J, Schmitz J. Ancient traces of tailless retropseudogenes in therian genomes. Genome Biol Evol 2015;7:889-900. [PMID: 25724209 PMCID: PMC5322556 DOI: 10.1093/gbe/evv040] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]  Open
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