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For: Bezrutczyk M, Zöllner NR, Kruse CPS, Hartwig T, Lautwein T, Köhrer K, Frommer WB, Kim JY. Evidence for phloem loading via the abaxial bundle sheath cells in maize leaves. Plant Cell 2021;33:531-547. [PMID: 33955497 PMCID: PMC8136869 DOI: 10.1093/plcell/koaa055] [Citation(s) in RCA: 68] [Impact Index Per Article: 22.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/16/2020] [Accepted: 12/01/2020] [Indexed: 05/22/2023]
Number Cited by Other Article(s)
1
Zhang B, Ma Z, Guo H, Chen S, Liu J. Single-cell RNA-sequencing provides new insights into the cell-specific expression patterns and transcriptional regulation of photosynthetic genes in bermudagrass leaf blades. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2024;213:108857. [PMID: 38905728 DOI: 10.1016/j.plaphy.2024.108857] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2024] [Revised: 06/06/2024] [Accepted: 06/18/2024] [Indexed: 06/23/2024]
2
Deng Q, Du P, Gangurde SS, Hong Y, Xiao Y, Hu D, Li H, Lu Q, Li S, Liu H, Wang R, Huang L, Wang W, Garg V, Liang X, Varshney RK, Chen X, Liu H. ScRNA-seq reveals dark- and light-induced differentially expressed gene atlases of seedling leaves in Arachis hypogaea L. PLANT BIOTECHNOLOGY JOURNAL 2024;22:1848-1866. [PMID: 38391124 PMCID: PMC11182584 DOI: 10.1111/pbi.14306] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2022] [Revised: 01/22/2024] [Accepted: 01/23/2024] [Indexed: 02/24/2024]
3
Lv Z, Jiang S, Kong S, Zhang X, Yue J, Zhao W, Li L, Lin S. Advances in Single-Cell Transcriptome Sequencing and Spatial Transcriptome Sequencing in Plants. PLANTS (BASEL, SWITZERLAND) 2024;13:1679. [PMID: 38931111 PMCID: PMC11207393 DOI: 10.3390/plants13121679] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2024] [Revised: 05/31/2024] [Accepted: 06/14/2024] [Indexed: 06/28/2024]
4
Liu Q, Ma W, Chen R, Li S, Wang Q, Wei C, Hong Y, Sun H, Cheng Q, Zhao J, Kang J. Multiome in the Same Cell Reveals the Impact of Osmotic Stress on Arabidopsis Root Tip Development at Single-Cell Level. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2024;11:e2308384. [PMID: 38634607 PMCID: PMC11199978 DOI: 10.1002/advs.202308384] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2023] [Revised: 02/27/2024] [Indexed: 04/19/2024]
5
Grones C, Eekhout T, Shi D, Neumann M, Berg LS, Ke Y, Shahan R, Cox KL, Gomez-Cano F, Nelissen H, Lohmann JU, Giacomello S, Martin OC, Cole B, Wang JW, Kaufmann K, Raissig MT, Palfalvi G, Greb T, Libault M, De Rybel B. Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics. THE PLANT CELL 2024;36:812-828. [PMID: 38231860 PMCID: PMC10980355 DOI: 10.1093/plcell/koae003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/02/2023] [Revised: 10/17/2023] [Accepted: 10/24/2023] [Indexed: 01/19/2024]
6
Mehdi F, Galani S, Wickramasinghe KP, Zhao P, Lu X, Lin X, Xu C, Liu H, Li X, Liu X. Current perspectives on the regulatory mechanisms of sucrose accumulation in sugarcane. Heliyon 2024;10:e27277. [PMID: 38463882 PMCID: PMC10923725 DOI: 10.1016/j.heliyon.2024.e27277] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2023] [Revised: 02/26/2024] [Accepted: 02/27/2024] [Indexed: 03/12/2024]  Open
7
Zhang J, Zhang L, Gongol B, Hayes J, Borowsky A, Bailey-Serres J, Girke T. spatialHeatmap: visualizing spatial bulk and single-cell assays in anatomical images. NAR Genom Bioinform 2024;6:lqae006. [PMID: 38312938 PMCID: PMC10836942 DOI: 10.1093/nargab/lqae006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2023] [Revised: 12/14/2023] [Accepted: 01/18/2024] [Indexed: 02/06/2024]  Open
8
Kaur H, Jha P, Ochatt SJ, Kumar V. Single-cell transcriptomics is revolutionizing the improvement of plant biotechnology research: recent advances and future opportunities. Crit Rev Biotechnol 2024;44:202-217. [PMID: 36775666 DOI: 10.1080/07388551.2023.2165900] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2022] [Revised: 11/04/2022] [Accepted: 12/08/2022] [Indexed: 02/14/2023]
9
Ali M, Yang T, He H, Zhang Y. Plant biotechnology research with single-cell transcriptome: recent advancements and prospects. PLANT CELL REPORTS 2024;43:75. [PMID: 38381195 DOI: 10.1007/s00299-024-03168-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2023] [Accepted: 02/05/2024] [Indexed: 02/22/2024]
10
Camo-Escobar D, Alcalá-Gutiérrez C, Palafox-Figueroa E, Guillotin B, Hernández-Coronado M, Coyac-Rodríguez JL, Cerbantez-Bueno VE, Vélez-Ramírez A, de Folter S, Birnbaum KD, Ortiz-Ramírez C. A common regulatory switch controls a suite of C4 traits in multiple cell types. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2023.12.21.572850. [PMID: 38260543 PMCID: PMC10802423 DOI: 10.1101/2023.12.21.572850] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/24/2024]
11
Chen X, Ru Y, Takahashi H, Nakazono M, Shabala S, Smith SM, Yu M. Single-cell transcriptomic analysis of pea shoot development and cell-type-specific responses to boron deficiency. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2024;117:302-322. [PMID: 37794835 DOI: 10.1111/tpj.16487] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2023] [Revised: 09/08/2023] [Accepted: 09/20/2023] [Indexed: 10/06/2023]
12
Liu J, Li L, Xiong Z, Robert CAM, Li B, He S, Chen W, Bi J, Zhai G, Guo S, Zhang H, Li J, Zhou S, Zhang X, Song CP. Trade-offs between the accumulation of cuticular wax and jasmonic acid-mediated herbivory resistance in maize. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2024;66:143-159. [PMID: 37975264 DOI: 10.1111/jipb.13586] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2023] [Accepted: 11/14/2023] [Indexed: 11/19/2023]
13
Manosalva Pérez N, Ferrari C, Engelhorn J, Depuydt T, Nelissen H, Hartwig T, Vandepoele K. MINI-AC: inference of plant gene regulatory networks using bulk or single-cell accessible chromatin profiles. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2024;117:280-301. [PMID: 37788349 DOI: 10.1111/tpj.16483] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2023] [Revised: 09/13/2023] [Accepted: 09/16/2023] [Indexed: 10/05/2023]
14
Lin JL, Chen L, Wu WK, Guo XX, Yu CH, Xu M, Nie GB, Dun JL, Li Y, Xu B, Wang LJ, Chen XY, Gao W, Huang JQ. Single-cell RNA sequencing reveals a hierarchical transcriptional regulatory network of terpenoid biosynthesis in cotton secretory glandular cells. MOLECULAR PLANT 2023;16:1990-2003. [PMID: 37849250 DOI: 10.1016/j.molp.2023.10.008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2023] [Revised: 09/24/2023] [Accepted: 10/12/2023] [Indexed: 10/19/2023]
15
Smith EN, van Aalst M, Tosens T, Niinemets Ü, Stich B, Morosinotto T, Alboresi A, Erb TJ, Gómez-Coronado PA, Tolleter D, Finazzi G, Curien G, Heinemann M, Ebenhöh O, Hibberd JM, Schlüter U, Sun T, Weber APM. Improving photosynthetic efficiency toward food security: Strategies, advances, and perspectives. MOLECULAR PLANT 2023;16:1547-1563. [PMID: 37660255 DOI: 10.1016/j.molp.2023.08.017] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/03/2023] [Revised: 08/20/2023] [Accepted: 08/31/2023] [Indexed: 09/04/2023]
16
Meng X, Zhang Z, Wang H, Nai F, Wei Y, Li Y, Wang X, Ma X, Tegeder M. Multi-scale analysis provides insights into the roles of ureide permeases in wheat nitrogen use efficiency. JOURNAL OF EXPERIMENTAL BOTANY 2023;74:5564-5590. [PMID: 37478311 DOI: 10.1093/jxb/erad286] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2022] [Accepted: 07/19/2023] [Indexed: 07/23/2023]
17
Cao S, He Z, Chen R, Luo Y, Fu LY, Zhou X, He C, Yan W, Zhang CY, Chen D. scPlant: A versatile framework for single-cell transcriptomic data analysis in plants. PLANT COMMUNICATIONS 2023;4:100631. [PMID: 37254480 PMCID: PMC10504592 DOI: 10.1016/j.xplc.2023.100631] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/05/2023] [Revised: 02/13/2023] [Accepted: 05/24/2023] [Indexed: 06/01/2023]
18
Xue X, Beuchat G, Wang J, Yu YC, Moose S, Chen J, Chen LQ. Sugar accumulation enhancement in sorghum stem is associated with reduced reproductive sink strength and increased phloem unloading activity. FRONTIERS IN PLANT SCIENCE 2023;14:1233813. [PMID: 37767289 PMCID: PMC10519796 DOI: 10.3389/fpls.2023.1233813] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/02/2023] [Accepted: 08/21/2023] [Indexed: 09/29/2023]
19
Mendieta JP, Sangra A, Yan H, Minow MAA, Schmitz RJ. Exploring plant cis-regulatory elements at single-cell resolution: overcoming biological and computational challenges to advance plant research. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2023;115:1486-1499. [PMID: 37309871 PMCID: PMC10598807 DOI: 10.1111/tpj.16351] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/20/2023] [Revised: 06/06/2023] [Accepted: 06/08/2023] [Indexed: 06/14/2023]
20
Chen C, Ge Y, Lu L. Opportunities and challenges in the application of single-cell and spatial transcriptomics in plants. FRONTIERS IN PLANT SCIENCE 2023;14:1185377. [PMID: 37636094 PMCID: PMC10453814 DOI: 10.3389/fpls.2023.1185377] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/13/2023] [Accepted: 07/26/2023] [Indexed: 08/29/2023]
21
Li H, Song K, Zhang X, Wang D, Dong S, Liu Y, Yang L. Application of Multi-Perspectives in Tea Breeding and the Main Directions. Int J Mol Sci 2023;24:12643. [PMID: 37628823 PMCID: PMC10454712 DOI: 10.3390/ijms241612643] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2023] [Revised: 07/29/2023] [Accepted: 08/08/2023] [Indexed: 08/27/2023]  Open
22
Benning UF, Chen L, Watson-Lazowski A, Henry C, Furbank RT, Ghannoum O. Spatial expression patterns of genes encoding sugar sensors in leaves of C4 and C3 grasses. ANNALS OF BOTANY 2023;131:985-1000. [PMID: 37103118 PMCID: PMC10332396 DOI: 10.1093/aob/mcad057] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2022] [Accepted: 04/26/2023] [Indexed: 06/19/2023]
23
D'Agostino LW, Yong-Villalobos L, Herrera-Estrella L, Patil GB. Development of High-Quality Nuclei Isolation to Study Plant Root-Microbe Interaction for Single-Nuclei Transcriptomic Sequencing in Soybean. PLANTS (BASEL, SWITZERLAND) 2023;12:2466. [PMID: 37447027 DOI: 10.3390/plants12132466] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2023] [Revised: 06/22/2023] [Accepted: 06/27/2023] [Indexed: 07/15/2023]
24
Jin J, Yu S, Lu P, Cao P. Deciphering plant cell-cell communications using single-cell omics data. Comput Struct Biotechnol J 2023;21:3690-3695. [PMID: 37576747 PMCID: PMC10412842 DOI: 10.1016/j.csbj.2023.06.016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2022] [Revised: 06/16/2023] [Accepted: 06/16/2023] [Indexed: 08/15/2023]  Open
25
Yu X, Liu Z, Sun X. Single-cell and spatial multi-omics in the plant sciences: Technical advances, applications, and perspectives. PLANT COMMUNICATIONS 2023;4:100508. [PMID: 36540021 DOI: 10.1016/j.xplc.2022.100508] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/10/2022] [Revised: 11/09/2022] [Accepted: 12/16/2022] [Indexed: 05/11/2023]
26
Sun Y, Han Y, Sheng K, Yang P, Cao Y, Li H, Zhu QH, Chen J, Zhu S, Zhao T. Single-cell transcriptomic analysis reveals the developmental trajectory and transcriptional regulatory networks of pigment glands in Gossypium bickii. MOLECULAR PLANT 2023;16:694-708. [PMID: 36772793 DOI: 10.1016/j.molp.2023.02.005] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/11/2022] [Revised: 12/31/2022] [Accepted: 02/07/2023] [Indexed: 06/18/2023]
27
Rojas BE, Tonetti T, Figueroa CM. Trehalose 6-phosphate metabolism in C4 species. CURRENT OPINION IN PLANT BIOLOGY 2023;72:102347. [PMID: 36806837 DOI: 10.1016/j.pbi.2023.102347] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2022] [Revised: 01/09/2023] [Accepted: 01/19/2023] [Indexed: 06/18/2023]
28
Tyagi P, Singh D, Mathur S, Singh A, Ranjan R. Upcoming progress of transcriptomics studies on plants: An overview. FRONTIERS IN PLANT SCIENCE 2022;13:1030890. [PMID: 36589087 PMCID: PMC9798009 DOI: 10.3389/fpls.2022.1030890] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/29/2022] [Accepted: 10/27/2022] [Indexed: 06/17/2023]
29
Tu M, Zeng J, Zhang J, Fan G, Song G. Unleashing the power within short-read RNA-seq for plant research: Beyond differential expression analysis and toward regulomics. FRONTIERS IN PLANT SCIENCE 2022;13:1038109. [PMID: 36570898 PMCID: PMC9773216 DOI: 10.3389/fpls.2022.1038109] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/06/2022] [Accepted: 11/21/2022] [Indexed: 06/17/2023]
30
Ferrari C, Manosalva Pérez N, Vandepoele K. MINI-EX: Integrative inference of single-cell gene regulatory networks in plants. MOLECULAR PLANT 2022;15:1807-1824. [PMID: 36307979 DOI: 10.1016/j.molp.2022.10.016] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2022] [Revised: 09/30/2022] [Accepted: 10/21/2022] [Indexed: 05/26/2023]
31
Wen L, Li G, Huang T, Geng W, Pei H, Yang J, Zhu M, Zhang P, Hou R, Tian G, Su W, Chen J, Zhang D, Zhu P, Zhang W, Zhang X, Zhang N, Zhao Y, Cao X, Peng G, Ren X, Jiang N, Tian C, Chen ZJ. Single-cell technologies: From research to application. Innovation (N Y) 2022;3:100342. [PMCID: PMC9637996 DOI: 10.1016/j.xinn.2022.100342] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2022] [Accepted: 10/13/2022] [Indexed: 11/09/2022]  Open
32
Wei X, Huang Y, Nguyen STT, Collings DA, McCurdy DW. Asymmetric wall ingrowth deposition in Arabidopsis phloem parenchyma transfer cells is tightly associated with sieve elements. JOURNAL OF EXPERIMENTAL BOTANY 2022;73:5414-5427. [PMID: 35609084 PMCID: PMC9467654 DOI: 10.1093/jxb/erac234] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/05/2022] [Accepted: 07/20/2022] [Indexed: 06/15/2023]
33
Liu Z, Fan H, Ma Z. Comparison of SWEET gene family between maize and foxtail millet through genomic, transcriptomic, and proteomic analyses. THE PLANT GENOME 2022;15:e20226. [PMID: 35713030 DOI: 10.1002/tpg2.20226] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2021] [Accepted: 04/14/2021] [Indexed: 06/15/2023]
34
Tao S, Zhang W. Network and epigenetic characterization of subsets of genes specifically expressed in maize bundle sheath cells. Comput Struct Biotechnol J 2022;20:3581-3590. [PMID: 35860403 PMCID: PMC9287181 DOI: 10.1016/j.csbj.2022.07.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2022] [Revised: 07/02/2022] [Accepted: 07/02/2022] [Indexed: 11/21/2022]  Open
35
Mo Y, Jiao Y. Advances and applications of single-cell omics technologies in plant research. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2022;110:1551-1563. [PMID: 35426954 DOI: 10.1111/tpj.15772] [Citation(s) in RCA: 23] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/26/2022] [Revised: 04/08/2022] [Accepted: 04/11/2022] [Indexed: 06/14/2023]
36
Xue X, Wang J, Shukla D, Cheung LS, Chen LQ. When SWEETs Turn Tweens: Updates and Perspectives. ANNUAL REVIEW OF PLANT BIOLOGY 2022;73:379-403. [PMID: 34910586 DOI: 10.1146/annurev-arplant-070621-093907] [Citation(s) in RCA: 24] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
37
Braun DM. Phloem Loading and Unloading of Sucrose: What a Long, Strange Trip from Source to Sink. ANNUAL REVIEW OF PLANT BIOLOGY 2022;73:553-584. [PMID: 35171647 DOI: 10.1146/annurev-arplant-070721-083240] [Citation(s) in RCA: 46] [Impact Index Per Article: 23.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
38
Yan H, Lee J, Song Q, Li Q, Schiefelbein J, Zhao B, Li S. Identification of new marker genes from plant single-cell RNA-seq data using interpretable machine learning methods. THE NEW PHYTOLOGIST 2022;234:1507-1520. [PMID: 35211979 PMCID: PMC9314150 DOI: 10.1111/nph.18053] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2021] [Accepted: 02/06/2022] [Indexed: 05/16/2023]
39
Wu LB, Eom JS, Isoda R, Li C, Char SN, Luo D, Schepler-Luu V, Nakamura M, Yang B, Frommer WB. OsSWEET11b, a potential sixth leaf blight susceptibility gene involved in sugar transport-dependent male fertility. THE NEW PHYTOLOGIST 2022;234:975-989. [PMID: 35211968 DOI: 10.1111/nph.18054] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/21/2021] [Accepted: 02/14/2022] [Indexed: 06/14/2023]
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Aesaert S, Impens L, Coussens G, Van Lerberge E, Vanderhaeghen R, Desmet L, Vanhevel Y, Bossuyt S, Wambua AN, Van Lijsebettens M, Inzé D, De Keyser E, Jacobs TB, Karimi M, Pauwels L. Optimized Transformation and Gene Editing of the B104 Public Maize Inbred by Improved Tissue Culture and Use of Morphogenic Regulators. FRONTIERS IN PLANT SCIENCE 2022;13:883847. [PMID: 35528934 PMCID: PMC9072829 DOI: 10.3389/fpls.2022.883847] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2022] [Accepted: 03/22/2022] [Indexed: 05/13/2023]
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Bawa G, Liu Z, Yu X, Qin A, Sun X. Single-Cell RNA Sequencing for Plant Research: Insights and Possible Benefits. Int J Mol Sci 2022;23:ijms23094497. [PMID: 35562888 PMCID: PMC9100049 DOI: 10.3390/ijms23094497] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2022] [Revised: 04/09/2022] [Accepted: 04/18/2022] [Indexed: 12/12/2022]  Open
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Wen S, Neuhaus HE, Cheng J, Bie Z. Contributions of sugar transporters to crop yield and fruit quality. JOURNAL OF EXPERIMENTAL BOTANY 2022;73:2275-2289. [PMID: 35139196 DOI: 10.1093/jxb/erac043] [Citation(s) in RCA: 25] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/27/2021] [Accepted: 02/04/2022] [Indexed: 05/09/2023]
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Hu L, Zhang F, Song S, Yu X, Ren Y, Zhao X, Liu H, Liu G, Wang Y, He H. CsSWEET2, a Hexose Transporter from Cucumber (Cucumis sativus L.), Affects Sugar Metabolism and Improves Cold Tolerance in Arabidopsis. Int J Mol Sci 2022;23:ijms23073886. [PMID: 35409244 PMCID: PMC8999130 DOI: 10.3390/ijms23073886] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2022] [Revised: 03/26/2022] [Accepted: 03/29/2022] [Indexed: 02/04/2023]  Open
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An Efficient and Universal Protoplast Isolation Protocol Suitable for Transient Gene Expression Analysis and Single-Cell RNA Sequencing. Int J Mol Sci 2022;23:ijms23073419. [PMID: 35408780 PMCID: PMC8998730 DOI: 10.3390/ijms23073419] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2022] [Revised: 03/17/2022] [Accepted: 03/17/2022] [Indexed: 02/06/2023]  Open
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Ayiti OE, Babalola OO. Sustainable Intensification of Maize in the Industrial Revolution: Potential of Nitrifying Bacteria and Archaea. FRONTIERS IN SUSTAINABLE FOOD SYSTEMS 2022. [DOI: 10.3389/fsufs.2022.827477] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
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Zhu M, Taylor IW, Benfey PN. Single-cell genomics revolutionizes plant development studies across scales. Development 2022;149:274706. [PMID: 35285482 PMCID: PMC8977093 DOI: 10.1242/dev.200179] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Single-Cell Transcriptome and Network Analyses Unveil Key Transcription Factors Regulating Mesophyll Cell Development in Maize. Genes (Basel) 2022;13:genes13020374. [PMID: 35205426 PMCID: PMC8872562 DOI: 10.3390/genes13020374] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2022] [Revised: 02/14/2022] [Accepted: 02/17/2022] [Indexed: 12/17/2022]  Open
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Cuperus JT. Single-cell genomics in plants: current state, future directions, and hurdles to overcome. PLANT PHYSIOLOGY 2022;188:749-755. [PMID: 34662424 PMCID: PMC8825463 DOI: 10.1093/plphys/kiab478] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/29/2021] [Accepted: 09/21/2021] [Indexed: 05/26/2023]
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Tenorio Berrío R, Verstaen K, Vandamme N, Pevernagie J, Achon I, Van Duyse J, Van Isterdael G, Saeys Y, De Veylder L, Inzé D, Dubois M. Single-cell transcriptomics sheds light on the identity and metabolism of developing leaf cells. PLANT PHYSIOLOGY 2022;188:898-918. [PMID: 34687312 PMCID: PMC8825278 DOI: 10.1093/plphys/kiab489] [Citation(s) in RCA: 23] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/27/2021] [Accepted: 10/05/2021] [Indexed: 05/08/2023]
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Dai X, Tu X, Du B, Dong P, Sun S, Wang X, Sun J, Li G, Lu T, Zhong S, Li P. Chromatin and regulatory differentiation between bundle sheath and mesophyll cells in maize. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2022;109:675-692. [PMID: 34783109 DOI: 10.1111/tpj.15586] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/15/2021] [Revised: 11/04/2021] [Accepted: 11/09/2021] [Indexed: 06/13/2023]
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