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Masindi V, Foteinis S, Nduli K, Akinwekomi V. Systematic assessment of SARS-CoV-2 virus in wastewater, rivers and drinking water - A catchment-wide appraisal. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 800:149298. [PMID: 34388648 PMCID: PMC8319043 DOI: 10.1016/j.scitotenv.2021.149298] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/27/2021] [Revised: 07/22/2021] [Accepted: 07/23/2021] [Indexed: 06/13/2023]
Abstract
Human coronaviruses (HCoVs) attracted attention in 2002 with the severe acute respiratory syndrome (SARS) outbreak, caused by the SARS-CoV virus (mortality rate 9.6%), and gained further notoriety in 2012 with the Middle East respiratory syndrome (MERS) (mortality rate 34.3%). Currently, the world is experiencing an unprecedented crisis due to the COVID-19 global pandemic, caused by the SARS-CoV-2 virus in 2019. The virus can pass to the faeces of some patients, as was the case of SARS-CoV and MERS-CoV viruses. This suggests that apart from the airborne (droplets and aerosols) and person-to-person (including fomites) transmission, the faecal-oral route of transmission could also be possible for HCoVs. In this eventuality, natural water bodies could act as a virus reservoir of infection. Here, the temporospatial migration and attenuation of the SARS-CoV-2 virus in municipal wastewater, the receiving environment, and drinking water is evaluated, using the polymerase chain reaction (PCR), in the South African setting. SARS-CoV-2 viral RNA was identified in raw wastewater influent but was below the detection limit in the latter treatment stages. This suggests that the virus decays from as early as primary treatment and this could be attributed to wastewater's hydraulic retention time (2-4 h), composition, and more importantly temperature (>25 °C). Therefore, the probability of SARS-CoV-2 virus transportation in water catchments, in the eventuality that the virus remains infective in wastewater, appears to be low in the South African setting. Finally, catchment-wide monitoring offers a snapshot of the status of the catchment in relation to contagious viruses and can play a pivotal role in informing the custodians and downstream water users of potential risks embedded in water bodies.
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Affiliation(s)
- Vhahangwele Masindi
- Magalies Water (MW), Scientific Services (SS), Research & Development (R&D) Division, Erf 3475, Stoffberg Street, Brits 0250, South Africa; Department of Environmental Science, College of Agriculture and Environmental Sciences (CAES), University of South Africa (UNISA), P.O. Box 392, Florida 1710, South Africa.
| | - Spyros Foteinis
- Research Centre for Carbon Solutions, School of Engineering and Physical Sciences, Heriot-Watt University, Edinburgh EH14 4AS, UK.
| | - Kefilwe Nduli
- Magalies Water (MW), Scientific Services (SS), Research & Development (R&D) Division, Erf 3475, Stoffberg Street, Brits 0250, South Africa
| | - Vhahangwele Akinwekomi
- Magalies Water (MW), Scientific Services (SS), Research & Development (R&D) Division, Erf 3475, Stoffberg Street, Brits 0250, South Africa
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2
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Xu X, Zheng X, Li S, Lam NS, Wang Y, Chu DKW, Poon LLM, Tun HM, Peiris M, Deng Y, Leung GM, Zhang T. The first case study of wastewater-based epidemiology of COVID-19 in Hong Kong. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 790:148000. [PMID: 34091338 PMCID: PMC8142803 DOI: 10.1016/j.scitotenv.2021.148000] [Citation(s) in RCA: 40] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2021] [Revised: 05/17/2021] [Accepted: 05/20/2021] [Indexed: 05/02/2023]
Abstract
Early detection and surveillance of severe acute respiratory syndrome-coronavirus 2 (SARS-CoV-2) virus are key pre-requisites for the effective control of coronavirus disease (COVID-19). So far, sewage testing has been increasingly employed as an alternative surveillance tool for this disease. However, sampling site characteristics impact the testing results and should be addressed in the early use stage of this emerging tool. In this study, we implemented the sewage testing for SARS-CoV-2 virus across sampling sites with different sewage system characteristics. We first validated a testing method using "positive" samples from a hospital treating COVID-19 patients. This method was used to test 107 sewage samples collected during the third wave of the COVID-19 outbreak in Hong Kong (from June 8 to September 29, 2020), covering sampling sites associated with a COVID-19 hospital, public housing estates, and conventional sewage treatment facilities. The highest viral titer of 1975 copy/mL in sewage was observed in a sample collected from the isolation ward of the COVID-19 hospital. Sewage sampling at individual buildings detected the virus 2 days before the first cases were identified. Sequencing of the detected viral fragment confirmed an identical nucleotide sequence to that of the SARS-CoV-2 isolated from human samples. The virus was also detected in sewage treatment facilities, which serve populations of approximately 40,000 to more than one million people.
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Affiliation(s)
- Xiaoqing Xu
- Environmental Microbiome Engineering and Biotechnology Laboratory, Department of Civil Engineering, The University of Hong Kong, Pok Fu Lam Road, Hong Kong SAR, China
| | - Xiawan Zheng
- Environmental Microbiome Engineering and Biotechnology Laboratory, Department of Civil Engineering, The University of Hong Kong, Pok Fu Lam Road, Hong Kong SAR, China
| | - Shuxian Li
- Environmental Microbiome Engineering and Biotechnology Laboratory, Department of Civil Engineering, The University of Hong Kong, Pok Fu Lam Road, Hong Kong SAR, China
| | - Nga Sze Lam
- Environmental Microbiome Engineering and Biotechnology Laboratory, Department of Civil Engineering, The University of Hong Kong, Pok Fu Lam Road, Hong Kong SAR, China
| | - Yulin Wang
- Environmental Microbiome Engineering and Biotechnology Laboratory, Department of Civil Engineering, The University of Hong Kong, Pok Fu Lam Road, Hong Kong SAR, China
| | - Daniel K W Chu
- School of Public Health, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong SAR, China
| | - Leo L M Poon
- School of Public Health, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong SAR, China
| | - Hein Min Tun
- School of Public Health, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong SAR, China
| | - Malik Peiris
- School of Public Health, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong SAR, China
| | - Yu Deng
- Environmental Microbiome Engineering and Biotechnology Laboratory, Department of Civil Engineering, The University of Hong Kong, Pok Fu Lam Road, Hong Kong SAR, China.
| | - Gabriel M Leung
- School of Public Health, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong SAR, China.
| | - Tong Zhang
- Environmental Microbiome Engineering and Biotechnology Laboratory, Department of Civil Engineering, The University of Hong Kong, Pok Fu Lam Road, Hong Kong SAR, China.
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3
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Sanchez-Galan JE, Ureña G, Escovar LF, Fabrega-Duque JR, Coles A, Kurt Z. Challenges to detect SARS-CoV-2 on environmental media, the need and strategies to implement the detection methodologies in wastewaters. JOURNAL OF ENVIRONMENTAL CHEMICAL ENGINEERING 2021; 9:105881. [PMID: 34221893 PMCID: PMC8239206 DOI: 10.1016/j.jece.2021.105881] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/10/2020] [Revised: 04/15/2021] [Accepted: 06/13/2021] [Indexed: 06/13/2023]
Abstract
Understanding risks, putting in place preventative methods to seamlessly continue daily activities are essential tools to fight a pandemic. All social, commercial and leisure activities have an impact on the environmental media. Therefore, to accurately predict the fate and behavior of viruses in the environment, it is necessary to understand and analyze available detection methods, possible transmission pathways and preventative techniques. The aim of this review is to critically analyze and summarize the research done regarding SARS-COV-2 virus detection, focusing on sampling and laboratory detection methods in environmental media. Special attention will be given to wastewater and sewage sludge. This review has summarized the survival of the virus on surfaces to estimate the risk carried by different environmental media (water, wastewater, air and soil) in order to explain which communities are under higher risk. The critical analysis concludes that the detection of SARS-CoV-2 with current technologies and sampling strategies would reveal the presence of the virus. This information could be used to design systematic sampling points throughout the sewage systems when available, taking into account peak flows and more importantly economic factors on when to sample. Such approaches will provide clues for potential future viral outbreak, saving financial resources by reducing testing necessities for viral detection, hence contributing for more appropriate confinement policies by governments and could be further used to define more precisely post-pandemic or additional waves measures if/ when needed.
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Affiliation(s)
- Javier E Sanchez-Galan
- Facultad de Ingeniería de Sistemas Computacionales (FISC), Universidad Tecnológica de Panamá, Panama
- Grupo de Investigación en Biotecnología, Bioinformática y Biología de Sistemas (GIBBS), Universidad Tecnológica de Panamá, Panama
- Institute of Scientific Research and High Technology Services, Panama City, Panama
| | - Grimaldo Ureña
- Grupo de Investigación en Biotecnología, Bioinformática y Biología de Sistemas (GIBBS), Universidad Tecnológica de Panamá, Panama
- Theoretical Evolutionary Genetics Laboratory, University of Houston, Houston, TX, USA
| | | | - Jose R Fabrega-Duque
- Centro de Investigaciones Hidráulicas e Hidrotécnicas (CIHH), Universidad Tecnologica de Panama, Panama
| | - Alexander Coles
- Centro de Investigaciones Hidráulicas e Hidrotécnicas (CIHH), Universidad Tecnologica de Panama, Panama
| | - Zohre Kurt
- Grupo de Investigación en Biotecnología, Bioinformática y Biología de Sistemas (GIBBS), Universidad Tecnológica de Panamá, Panama
- Urban Risk Center, Florida State University-Panama, Panama
- Institute of Scientific Research and High Technology Services, Panama City, Panama
- Department of Environmental Engineering, Middle East Technical University, Ankara, Turkey
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4
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Butor Škulcová A, Tamášová K, Vojs Staňová A, Bírošová L, Krahulcová M, Gál M, Konečná B, Janíková M, Celec P, Grabicová K, Grabic R, Filip J, Belišová N, Ryba J, Kerekeš K, Špalková V, Híveš J, Mackuľak T. Effervescent ferrate(VI)-based tablets as an effective means for removal SARS-CoV-2 RNA, pharmaceuticals and resistant bacteria from wastewater. JOURNAL OF WATER PROCESS ENGINEERING 2021; 43:102223. [PMID: 35592837 PMCID: PMC8290487 DOI: 10.1016/j.jwpe.2021.102223] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/11/2021] [Revised: 07/10/2021] [Accepted: 07/12/2021] [Indexed: 06/14/2023]
Abstract
Waterborne pathogens including viruses, bacteria and micropollutants secreted from population can spread through the sewerage system. In this study, the efficiency of unique effervescent ferrate-based tablets was evaluated for total RNA and DNA removal, disinfection and degradation of micropollutants in hospital wastewater. For the purpose of testing, proposed tablets (based on citric acid or sodium dihydrogen phosphate) were used for various types of hospital wastewater with specific biological and chemical contamination. Total RNA destruction efficiency using tablets was 70-100% depending on the type of acidic component. DNA destruction efficiency was lower on the level 51-94% depending on the type of acidic component. In addition, our study confirms that effervescent ferrate-based tablets are able to efficiently remove of SARS-CoV-2 RNA from wastewater. Degradation of often detected micropollutants (antiepileptic, antidepressant, antihistamine, hypertensive and their metabolites) was dependent on the type of detected pharmaceuticals and on the acidic component used. Sodium dihydrogen phosphate based tablet appeared to be more effective than citric acid based tablet and removed some pharmaceuticals with efficiency higher than 97%. Last but not least, the disinfection ability was also verified. Tableted ferrates were confirmed to be an effective disinfectant and no resistant microorganisms were observed after treatment. Total and antibiotic resistant bacteria (coliforms and enterococci) were determined by cultivation on diagnostic selective agar growth media.
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Affiliation(s)
- Andrea Butor Škulcová
- Department of Environmental Engineering, Faculty of Chemical and Food Technology, Slovak University of Technology in Bratislava, Radlinského 9, SK-812 37 Bratislava, Slovak Republic
| | - Katarína Tamášová
- Department of Environmental Engineering, Faculty of Chemical and Food Technology, Slovak University of Technology in Bratislava, Radlinského 9, SK-812 37 Bratislava, Slovak Republic
| | - Andrea Vojs Staňová
- Department of Analytical Chemistry, Faculty of Natural Sciences, Comenius University in Bratislava, Mlynská dolina, Ilkovičova 6, SK-842 15 Bratislava 4, Slovak Republic
- South Bohemian Research Center of Aquaculture and Biodiversity of Hydrocenoses, Faculty of Fisheries and Protection of Waters, University of South Bohemia in České Budějovice, Zátiší 728/II, CZ-389 25 Vodňany, Czech Republic
| | - Lucia Bírošová
- Department Nutrition and Food Quality Assessment, Faculty of Chemical and Food Technology, Slovak University of Technology in Bratislava, Radlinského 9, SK-812 37 Bratislava, Slovak Republic
| | - Monika Krahulcová
- Department Nutrition and Food Quality Assessment, Faculty of Chemical and Food Technology, Slovak University of Technology in Bratislava, Radlinského 9, SK-812 37 Bratislava, Slovak Republic
| | - Miroslav Gál
- Department of Inorganic Technology, Institute of Inorganic Chemistry, Technology and Materials, Faculty of Chemical and Food Technology, Slovak University of Technology in Bratislava, Radlinského 9, SK-812 37 Bratislava, Slovak Republic
| | - Barbora Konečná
- Institute of Molecular Biomedicine, Faculty of Medicine, Comenius University in Bratislava, Sasinkova 4, SK-811 08 Bratislava, Slovak Republic
| | - Monika Janíková
- Institute of Molecular Biomedicine, Faculty of Medicine, Comenius University in Bratislava, Sasinkova 4, SK-811 08 Bratislava, Slovak Republic
| | - Peter Celec
- Institute of Molecular Biomedicine, Faculty of Medicine, Comenius University in Bratislava, Sasinkova 4, SK-811 08 Bratislava, Slovak Republic
- Institute of Pathophysiology, Faculty of Medicine, Comenius University, Sasinkova 4, 811 08 Bratislava, Slovakia
- Department of Molecular Biology, Faculty of Natural Sciences, Comenius University, Ilkovičova 6, 842 15 Bratislava, Slovakia
| | - Kateřina Grabicová
- South Bohemian Research Center of Aquaculture and Biodiversity of Hydrocenoses, Faculty of Fisheries and Protection of Waters, University of South Bohemia in České Budějovice, Zátiší 728/II, CZ-389 25 Vodňany, Czech Republic
| | - Roman Grabic
- South Bohemian Research Center of Aquaculture and Biodiversity of Hydrocenoses, Faculty of Fisheries and Protection of Waters, University of South Bohemia in České Budějovice, Zátiší 728/II, CZ-389 25 Vodňany, Czech Republic
| | - Jan Filip
- Regional Centre of Advanced Technologies and Materials, Palacký University Olomouc, Šlechtitelů 27, CZ-783 71 Olomouc, Czech Republic
| | - Noemi Belišová
- Department of Environmental Engineering, Faculty of Chemical and Food Technology, Slovak University of Technology in Bratislava, Radlinského 9, SK-812 37 Bratislava, Slovak Republic
| | - Jozef Ryba
- Department of Polymer Processing, Faculty of Chemical and Food Technology, Slovak University of Technology in Bratislava, Krškanská 21, SK-949 01 Nitra, Slovak Republic
| | - Kamil Kerekeš
- Department of Inorganic Technology, Institute of Inorganic Chemistry, Technology and Materials, Faculty of Chemical and Food Technology, Slovak University of Technology in Bratislava, Radlinského 9, SK-812 37 Bratislava, Slovak Republic
| | - Viera Špalková
- Department of Inorganic Technology, Institute of Inorganic Chemistry, Technology and Materials, Faculty of Chemical and Food Technology, Slovak University of Technology in Bratislava, Radlinského 9, SK-812 37 Bratislava, Slovak Republic
- Department of Zoology and Fisheries, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences Prague, Kamýcka 129, 165 00, Praha 6, Suchdol, Czech Republic
| | - Ján Híveš
- Department of Inorganic Technology, Institute of Inorganic Chemistry, Technology and Materials, Faculty of Chemical and Food Technology, Slovak University of Technology in Bratislava, Radlinského 9, SK-812 37 Bratislava, Slovak Republic
| | - Tomáš Mackuľak
- Department of Environmental Engineering, Faculty of Chemical and Food Technology, Slovak University of Technology in Bratislava, Radlinského 9, SK-812 37 Bratislava, Slovak Republic
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5
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Tanhaei M, Mohebbi SR, Hosseini SM, Rafieepoor M, Kazemian S, Ghaemi A, Shamloei S, Mirjalali H, Asadzadeh Aghdaei H, Zali MR. The first detection of SARS-CoV-2 RNA in the wastewater of Tehran, Iran. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:38629-38636. [PMID: 33738744 PMCID: PMC7972808 DOI: 10.1007/s11356-021-13393-9] [Citation(s) in RCA: 32] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/13/2020] [Accepted: 03/08/2021] [Indexed: 05/03/2023]
Abstract
Following the official announcement of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) worldwide pandemic spread by WHO on March 11, 2020, more than 300,000 COVID-19 cases reported in Iran resulting in approximately 17,000 deaths as of August 2, 2020. In the present survey, we investigated the presence of SARS-CoV-2 RNA in raw and treated wastewater samples in Tehran, Iran. Untreated and treated wastewater samples were gathered from four wastewater treatment plants over a month period from June to July 2020. Firstly, an adsorption-elution concentration method was tested using an avian coronavirus (infectious bronchitis virus, IBV). Then, the method was effectively employed to survey the presence of SARS-CoV-2 genome in influent and effluent wastewater samples. SARS-CoV-2 RNA was found in 8 out of 10 treated wastewater samples utilizing a reverse transcription-quantitative polymerase chain reaction (RT-qPCR) test to detect ORF1ab and N genes. Moreover, the rate of positivity in wastewater samples increased in last sample collection that shows circulation of SARS-CoV-2 was increased among the population. In addition, the high values detected in effluent wastewater from local wastewater treatment plants have several implications in health and ecology that should be further assessed.
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Affiliation(s)
- Mohammad Tanhaei
- Basic and Molecular Epidemiology of Gastrointestinal Disorders Research Center, Research Institute for Gastroenterology and Liver Diseases, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Seyed Reza Mohebbi
- Gastroenterology and Liver Diseases Research Center, Research Institute for Gastroenterology and Liver Diseases, Shahid Beheshti University of Medical Sciences, Arabi str., Yaman Ave., Velenjak, Tehran, Iran.
| | - Seyed Masoud Hosseini
- Department of Microbiology and Microbial Biotechnology, Faculty of Life Sciences and Biotechnology, Shahid Beheshti University, Tehran, Iran
| | - Maedeh Rafieepoor
- Basic and Molecular Epidemiology of Gastrointestinal Disorders Research Center, Research Institute for Gastroenterology and Liver Diseases, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Shabnam Kazemian
- Gastroenterology and Liver Diseases Research Center, Research Institute for Gastroenterology and Liver Diseases, Shahid Beheshti University of Medical Sciences, Arabi str., Yaman Ave., Velenjak, Tehran, Iran
| | - Amir Ghaemi
- Department of Virology, Pasteur Institute of Iran, Tehran, Iran
| | - Sharareh Shamloei
- Department of Water and Wastewater Quality Control Laboratory, Water and Wastewater Company, Tehran, Iran
| | - Hamed Mirjalali
- Foodborne and Waterborne Diseases Research Center, Research Institute for Gastroenterology and Liver Diseases, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Hamid Asadzadeh Aghdaei
- Basic and Molecular Epidemiology of Gastrointestinal Disorders Research Center, Research Institute for Gastroenterology and Liver Diseases, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Mohammad Reza Zali
- Gastroenterology and Liver Diseases Research Center, Research Institute for Gastroenterology and Liver Diseases, Shahid Beheshti University of Medical Sciences, Arabi str., Yaman Ave., Velenjak, Tehran, Iran
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Balboa S, Mauricio-Iglesias M, Rodriguez S, Martínez-Lamas L, Vasallo FJ, Regueiro B, Lema JM. The fate of SARS-COV-2 in WWTPS points out the sludge line as a suitable spot for detection of COVID-19. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021. [PMID: 33556806 DOI: 10.1101/2020.05.25.20112706] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
SARS-CoV-2 genetic material is detectable in the faeces of a considerable part of COVID-19 cases and hence, in municipal wastewater. This fact was confirmed early during the spread of the COVID-19 pandemic and prompted several studies that proposed monitoring its incidence by wastewater. This paper studies the fate of SARS-CoV-2 genetic material in wastewater treatment plants using RT-qPCR with a two-fold goal: i) to check its presence in the water effluent and in the produced sludge and ii) based on the understanding of the virus particles fate, to identify the most suitable spots for detecting the incidence of COVID-19 and monitor its evolution. On the grounds of the affinity of enveloped virus towards biosolids, we hypothesized that the sludge line acts as a concentrator of SARS-CoV-2 genetic material. Sampling several spots in primary, secondary and sludge treatment at the Ourense (Spain) WWTP in 5 different days showed that, in effect, most of SARS-CoV-2 particles cannot be detected in the water effluent as they are retained by the sludge line. We identified the sludge thickener as a suitable spot for detecting SARS-CoV-2 particles thanks to its higher solids concentration (more virus particles) and longer residence time (less sensitive to dilution caused by precipitation). These findings could be useful to develop a suitable strategy for early warning of COVID-19 incidence based on WWTP monitoring.
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Affiliation(s)
- Sabela Balboa
- CRETUS Institute, Department of Chemical Engineering, Universidade de Santiago de Compostela, Spain
| | - Miguel Mauricio-Iglesias
- CRETUS Institute, Department of Chemical Engineering, Universidade de Santiago de Compostela, Spain.
| | | | - Lucía Martínez-Lamas
- Microbiology and Infectology Research Group, Galicia Sur Health Research Institute (IIS Galicia Sur) SERGAS-Universidade de Vigo, Spain; Department of Microbiology, Complexo Hospitalario Universitario de Vigo (CHUVI), Sergas, Vigo, Spain
| | - Francisco J Vasallo
- Microbiology and Infectology Research Group, Galicia Sur Health Research Institute (IIS Galicia Sur) SERGAS-Universidade de Vigo, Spain; Department of Microbiology, Complexo Hospitalario Universitario de Vigo (CHUVI), Sergas, Vigo, Spain
| | - Benito Regueiro
- Microbiology and Infectology Research Group, Galicia Sur Health Research Institute (IIS Galicia Sur) SERGAS-Universidade de Vigo, Spain; Department of Microbiology, Complexo Hospitalario Universitario de Vigo (CHUVI), Sergas, Vigo, Spain; Department of Microbiology, Universidade de Santiago de Compostela, Spain
| | - Juan M Lema
- CRETUS Institute, Department of Chemical Engineering, Universidade de Santiago de Compostela, Spain
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Wiktorczyk-Kapischke N, Grudlewska-Buda K, Wałecka-Zacharska E, Kwiecińska-Piróg J, Radtke L, Gospodarek-Komkowska E, Skowron K. SARS-CoV-2 in the environment-Non-droplet spreading routes. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 770:145260. [PMID: 33513500 PMCID: PMC7825822 DOI: 10.1016/j.scitotenv.2021.145260] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/09/2020] [Revised: 01/13/2021] [Accepted: 01/14/2021] [Indexed: 04/15/2023]
Abstract
The new coronavirus SARS-CoV-2, first identified in Wuhan (China) in December 2019, represents the same family as the Serve Acute Respiratory Syndrome Coronavirus-1 (SARS-CoV-1). These viruses spread mainly via the droplet route. However, during the pandemic of COVID-19 other reservoirs, i.e., water (surface and ground), sewage, garbage, or soil, should be considered. As the infectious SARS-CoV-2 particles are also present in human excretions, such a non-droplet transmission is also possible. A significant problem is the presence of SARS-CoV-2 in the hospital environment, including patients' rooms, medical equipment, everyday objects and the air. Relevant is selecting the type of equipment in the COVID-19 hospital wards on which the virus particles persist the shortest or do not remain infectious. Elimination of plastic objects/equipment from the environment of the infected person seems to be of great importance. It is particularly relevant in water reservoirs contaminated with raw discharges. Wastewater may contain coronaviruses and therefore there is a need for expanding Water-Based Epidemiology (WBE) studies to use obtained values as tool in determination of the actual percentage of the SARS-CoV-2 infected population in an area. It is of great importance to evaluate the available disinfection methods to control the spread of SARS-CoV-2 in the environment. Exposure of SARS-CoV-2 to 65-70% ethanol, 0.5% hydrogen peroxide, or 0.1% sodium hypochlorite has effectively eliminated the virus from the surfaces. Since there are many unanswered questions about the transmission of SARS-CoV-2, the research on this topic is still ongoing. This review aims to summarize current knowledge on the SARS-CoV-2 transmission and elucidate the viral survival in the environment, with particular emphasis on the possibility of non-droplet transmission.
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Affiliation(s)
- Natalia Wiktorczyk-Kapischke
- Department of Microbiology, Nicolaus Copernicus University in Toruń, Collegium Medicum of L. Rydygier in Bydgoszcz, 9 M. Skłodowskiej-Curie Street, 85-094 Bydgoszcz, Poland
| | - Katarzyna Grudlewska-Buda
- Department of Microbiology, Nicolaus Copernicus University in Toruń, Collegium Medicum of L. Rydygier in Bydgoszcz, 9 M. Skłodowskiej-Curie Street, 85-094 Bydgoszcz, Poland
| | - Ewa Wałecka-Zacharska
- Department of Food Hygiene and Consumer Health, Wrocław University of Environmental and Life Sciences, 31 C.K. Norwida St., 50-375 Wrocław, Poland
| | - Joanna Kwiecińska-Piróg
- Department of Microbiology, Nicolaus Copernicus University in Toruń, Collegium Medicum of L. Rydygier in Bydgoszcz, 9 M. Skłodowskiej-Curie Street, 85-094 Bydgoszcz, Poland
| | - Laura Radtke
- Faculty of Civil and Environmental Engineering and Architecture, UTP University of Science and Technology in Bydgoszcz, Al. prof. S. Kaliskiego 7, 85-796 Bydgoszcz, Poland
| | - Eugenia Gospodarek-Komkowska
- Department of Microbiology, Nicolaus Copernicus University in Toruń, Collegium Medicum of L. Rydygier in Bydgoszcz, 9 M. Skłodowskiej-Curie Street, 85-094 Bydgoszcz, Poland
| | - Krzysztof Skowron
- Department of Microbiology, Nicolaus Copernicus University in Toruń, Collegium Medicum of L. Rydygier in Bydgoszcz, 9 M. Skłodowskiej-Curie Street, 85-094 Bydgoszcz, Poland.
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8
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Zhou NA, Tharpe C, Meschke JS, Ferguson CM. Survey of rapid development of environmental surveillance methods for SARS-CoV-2 detection in wastewater. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 769:144852. [PMID: 33486187 PMCID: PMC7808727 DOI: 10.1016/j.scitotenv.2020.144852] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2020] [Revised: 12/21/2020] [Accepted: 12/23/2020] [Indexed: 05/18/2023]
Abstract
Environmental surveillance as a part of wastewater-based epidemiology (WBE) of SARS-CoV-2 can provide an early, cost-effective, unbiased community-level indicator of circulating COVID-19 in a population. The objective of this study was to determine how widely SARS-CoV-2 detection in wastewater is being investigated and what methods are used. A survey was developed and distributed, with results showing that methods were rapidly applied to conduct SARS-CoV-2 WBE, primarily to test wastewater influent from large urban wastewater treatment plants. Additionally, most methods utilized small wastewater volumes and the primary concentration methods used were polyethylene glycol precipitation, membrane filtration and centrifugal ultrafiltration followed by nucleic acid extraction and assay for primarily nucleocapsid gene targets (N1, N2, and/or N3). Since this survey was performed, many laboratories have continued to optimize and implement a variety of methods for SARS-CoV-2 WBE. Method comparison studies completed since this survey was conducted will assist in developing WBE as a supplemental tool to support public health and policy decision making responses.
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Affiliation(s)
- Nicolette A Zhou
- Environmental and Occupational Health Sciences, University of Washington, 4225 Roosevelt Way NE, Suite 100, Seattle, WA 98105, United States of America
| | - Courtney Tharpe
- Water Research Foundation, 1199 N Fairfax St., Suite 900, Alexandria, VA 22314, United States of America
| | - John Scott Meschke
- Environmental and Occupational Health Sciences, University of Washington, 4225 Roosevelt Way NE, Suite 100, Seattle, WA 98105, United States of America
| | - Christobel M Ferguson
- Water Research Foundation, 1199 N Fairfax St., Suite 900, Alexandria, VA 22314, United States of America.
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9
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Hasan SW, Ibrahim Y, Daou M, Kannout H, Jan N, Lopes A, Alsafar H, Yousef AF. Detection and quantification of SARS-CoV-2 RNA in wastewater and treated effluents: Surveillance of COVID-19 epidemic in the United Arab Emirates. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 764:142929. [PMID: 33131867 PMCID: PMC7571379 DOI: 10.1016/j.scitotenv.2020.142929] [Citation(s) in RCA: 104] [Impact Index Per Article: 26.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/16/2020] [Revised: 10/05/2020] [Accepted: 10/06/2020] [Indexed: 05/17/2023]
Abstract
Testing SARS-CoV-2 viral loads in wastewater has recently emerged as a method of tracking the prevalence of the virus and an early-warning tool for predicting outbreaks in the future. This study reports SARS-CoV-2 viral load in wastewater influents and treated effluents of 11 wastewater treatment plants (WWTPs), as well as untreated wastewater from 38 various locations, in the United Arab Emirates (UAE) in May and June 2020. Composite samples collected over twenty-four hours were thermally deactivated for safety, followed by viral concentration using ultrafiltration, RNA extraction using commercially available kits, and viral quantification using RT-qPCR. Furthermore, estimates of the prevalence of SARS-CoV-2 infection in different regions were simulated using Monte Carlo. Results showed that the viral load in wastewater influents from these WWTPs ranged from 7.50E+02 to over 3.40E+04 viral gene copies/L with some plants having no detectable viral RNA by RT-qPCR. The virus was also detected in 85% of untreated wastewater samples taken from different locations across the country, with viral loads in positive samples ranging between 2.86E+02 and over 2.90E+04 gene copies/L. It was also observed that the precautionary measures implemented by the UAE government correlated with a drop in the measured viral load in wastewater samples, which were in line with the reduction of COVID-19 cases reported in the population. Importantly, none of the 11 WWTPs' effluents tested positive during the entire sampling period, indicating that the treatment technologies used in the UAE are efficient in degrading SARS-CoV-2, and confirming the safety of treated re-used water in the country. SARS-CoV-2 wastewater testing has the potential to aid in monitoring or predicting an outbreak location and can shed light on the extent viral spread at the community level.
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Affiliation(s)
- Shadi W Hasan
- Center for Membranes and Advanced Water Technology (CMAT), Department of Chemical Engineering, Khalifa University of Science and Technology, P.O. Box 127788, Abu Dhabi, United Arab Emirates.
| | - Yazan Ibrahim
- Center for Membranes and Advanced Water Technology (CMAT), Department of Chemical Engineering, Khalifa University of Science and Technology, P.O. Box 127788, Abu Dhabi, United Arab Emirates
| | - Marianne Daou
- Department of Chemistry, Khalifa University of Science and Technology, PO Box 127788, Abu Dhabi, United Arab Emirates
| | - Hussein Kannout
- Center for Biotechnology (BTC), Khalifa University of Science and Technology, P.O. Box 127788, Abu Dhabi, United Arab Emirates
| | - Nila Jan
- Department of Chemistry, Khalifa University of Science and Technology, PO Box 127788, Abu Dhabi, United Arab Emirates
| | - Alvaro Lopes
- Ministry of Interior Research Center, Abu Dhabi, United Arab Emirates
| | - Habiba Alsafar
- Center for Biotechnology (BTC), Khalifa University of Science and Technology, P.O. Box 127788, Abu Dhabi, United Arab Emirates; College of Medicine and Health Sciences, Khalifa University of Science and Technology, P.O. Box 127788, Abu Dhabi, United Arab Emirates
| | - Ahmed F Yousef
- Department of Chemistry, Khalifa University of Science and Technology, PO Box 127788, Abu Dhabi, United Arab Emirates.
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10
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Hamouda M, Mustafa F, Maraqa M, Rizvi T, Aly Hassan A. Wastewater surveillance for SARS-CoV-2: Lessons learnt from recent studies to define future applications. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 759:143493. [PMID: 33190883 PMCID: PMC7648500 DOI: 10.1016/j.scitotenv.2020.143493] [Citation(s) in RCA: 75] [Impact Index Per Article: 18.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/08/2020] [Revised: 10/15/2020] [Accepted: 10/17/2020] [Indexed: 05/02/2023]
Abstract
Wastewater-based epidemiology (WBE) is successful in the detection of the spread of SARS-CoV-2. This review examines the methods used and results of recent studies on the quantification of SARS-CoV-2 in wastewater. WBE becomes essential, especially with virus transmission path uncertainty, limitations on the number of clinical tests that could be conducted, and a relatively long period for infected people to show symptoms. Wastewater surveillance was used to show the effect of lockdown on the virus spread. A WBE framework tailored for SARS-CoV-2 that incorporates lessons learnt from the reviewed studies was developed. Results of the review helped outline challenges facing the detection of SARS-CoV-2 in wastewater samples. A comparison between the various studies with regards to sample concentration and virus quantification was conducted. Five different primers sets were used for qPCR quantification; however, due to limited data availability, there is no consensus on the most sensitive primer. Correlating the slope of the relationship between the number of gene copies vs. the cumulative number of infections normalized to the total population served with the average new cases, suggests that qPCR results could help estimating the number of new infections. The correlation is improved when a lag period was introduced to account for asymptomatic infections. Based on lessons learnt from recent studies, it is recommended that future applications should consider the following: 1) ensuring occupational safety in managing sewage collection and processing, 2) evaluating the effectiveness of greywater disinfection, 3) measuring viral RNA decay due to biological and chemical activities during collection and treatment, 4) assessing the effectiveness of digital PCR, and 5) conducting large scale international studies that follow standardized protocols.
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Affiliation(s)
- Mohamed Hamouda
- Civil and Environmental Engineering and the National Water Center, United Arab Emirates University, P.O. Box 15551, Al Ain, Abu Dhabi, United Arab Emirates.
| | - Farah Mustafa
- Department of Biochemistry, College of Medicine & Health Sciences, United Arab Emirates University, P.O. Box 17666, Al Ain, Abu Dhabi, United Arab Emirates.
| | - Munjed Maraqa
- Civil and Environmental Engineering and the National Water Center, United Arab Emirates University, P.O. Box 15551, Al Ain, Abu Dhabi, United Arab Emirates.
| | - Tahir Rizvi
- Department of Microbiology & Immunology, College of Medicine & Health Sciences, United Arab Emirates University, P.O. Box 17666, Al Ain, Abu Dhabi, United Arab Emirates.
| | - Ashraf Aly Hassan
- Civil and Environmental Engineering and the National Water Center, United Arab Emirates University, P.O. Box 15551, Al Ain, Abu Dhabi, United Arab Emirates; Civil and Environmental Engineering, University of Nebraska Lincoln, 900 N 16th St., Lincoln, NE 68588-0531, USA.
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11
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Suthar S, Das S, Nagpure A, Madhurantakam C, Tiwari SB, Gahlot P, Tyagi VK. Epidemiology and diagnosis, environmental resources quality and socio-economic perspectives for COVID-19 pandemic. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2021; 280:111700. [PMID: 33261988 PMCID: PMC7687413 DOI: 10.1016/j.jenvman.2020.111700] [Citation(s) in RCA: 36] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/10/2020] [Revised: 11/16/2020] [Accepted: 11/16/2020] [Indexed: 05/07/2023]
Abstract
The COVID-19 pandemic caused by SARS-CoV-2 has emerged as a global issue of concern for public health, environment and socio-economic setup. This review addresses several aspects of epidemiology, and pathogenesis, environmental resource quality (air quality, hazardous waste management, and wastewater surveillance issues), and socio-economic issues worldwide. The accelerated research activity in the development of diagnostic kits for SARS-CoV-2 is in progress for the rapid sequencing of various strains of SARS-CoV-2. A notable reduction in air pollutants (NO2 and PM2.5) has been observed worldwide, but high air polluted cities showed intense mortalities in COVID-19 affected areas. The use of health safety equipment halted transportation, and work-from-home policy drastically impacted the quantity of solid and hazardous wastes management services. Wastewater appeared as another mode of enteric transmission of SARS-CoV-2. Thus, wastewater-based surveillance could act as a mode of the data source to track the virus's community spread. The pandemic also had a substantial socio-economic impact (health budget, industrial manufacturing, job loss, and unemployment) and further aggravated the countries' economic burden.
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Affiliation(s)
- Surindra Suthar
- School of Environment and Natural Resources, Doon University, Dehradun, 248 001, India
| | - Sukanya Das
- Department of Policy Studies, TERI School of Advanced Studies, New Delhi, 110070, India
| | | | - Chaithanya Madhurantakam
- Structural and Molecular Biology Laboratory, Department of Biotechnology, TERI School of Advanced Studies, New Delhi, 110070, India
| | - Satya Brat Tiwari
- Environmental Biotechnology Group, Department of Civil Engineering, Indian Institute of Technology Roorkee, Roorkee, 247667, India
| | - Pallavi Gahlot
- Environmental Biotechnology Group, Department of Civil Engineering, Indian Institute of Technology Roorkee, Roorkee, 247667, India
| | - Vinay Kumar Tyagi
- Environmental Biotechnology Group, Department of Civil Engineering, Indian Institute of Technology Roorkee, Roorkee, 247667, India.
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12
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Ihsanullah I, Bilal M, Naushad M. Coronavirus 2 (SARS-CoV-2) in water environments: Current status, challenges and research opportunities. JOURNAL OF WATER PROCESS ENGINEERING 2021; 39:101735. [PMID: 38620601 PMCID: PMC7566827 DOI: 10.1016/j.jwpe.2020.101735] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2020] [Revised: 10/04/2020] [Accepted: 10/09/2020] [Indexed: 05/02/2023]
Abstract
The outbreak of COVID-19 has posed enormous health, social, environmental and economic challenges to the entire human population. Nevertheless, it provides an opportunity for extensive research in various fields to evaluate the fate of the crisis and combat it. The apparent need for imperative research in the biological and medical field is the focus of researchers and scientists worldwide. However, there are some new challenges and research opportunities in the field of water and wastewater treatment concerning the novel coronavirus 2 (SARS-CoV-2). This article briefly summarizes the latest literature reporting the presence of SARS-CoV-2 in water and wastewater/sewage. Furthermore, it highlights the challenges, potential opportunities and research directions in the water and wastewater treatment field. Some of the significant challenges and research opportunities are the development of standard techniques for the detection and quantification of SARS-CoV-2 in the water phase, assessment of favorable environments for its survival and decay in water; and development of effective strategies for elimination of the novel virus from water. Advancement in research in this domain will help to protect the environment, human health, and managing this type of pandemic in the future.
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Affiliation(s)
- Ihsanullah Ihsanullah
- Center for Environment and Water, Research Institute, King Fahd University of Petroleum and Minerals, Dhahran, 31261, Saudi Arabia
| | - Muhammad Bilal
- School of Life Science and Food Engineering, Huaiyin Institute of Technology, Huaian, 223003, China
| | - Mu Naushad
- Advanced Materials Research Chair, Department of Chemistry, College of Science, King Saud University, Riyadh, 11451, Saudi Arabia
- Yonsei Frontier Lab, Yonsei University, Seoul, Republic of Korea
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13
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Al Huraimel K, Alhosani M, Kunhabdulla S, Stietiya MH. SARS-CoV-2 in the environment: Modes of transmission, early detection and potential role of pollutions. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 744:140946. [PMID: 32687997 PMCID: PMC7361046 DOI: 10.1016/j.scitotenv.2020.140946] [Citation(s) in RCA: 80] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/27/2020] [Revised: 06/22/2020] [Accepted: 07/11/2020] [Indexed: 05/19/2023]
Abstract
The coronavirus disease 2019 (COVID-19) is spreading globally having a profound effect on lives of millions of people, causing worldwide economic disruption. Curbing the spread of COVID-19 and future pandemics may be accomplished through understanding the environmental context of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and adoption of effective detection tools and mitigation policies. This article aims to examine the latest investigations on SARS-CoV-2 plausible environmental transmission modes, employment of wastewater surveillance for early detection of COVID-19, and elucidating the role of solid waste, water, and atmospheric quality on viral infectivity. Transmission of SARS-CoV-2 via faecal-oral or bio-aerosols lacks robust evidence and remains debatable. However, improper disinfection and defected plumbing systems in indoor environments such as hospitals and high-rise towers may facilitate the transport of virus-laden droplets of wastewater causing infection. Clinical and epidemiological studies are needed to present robust evidence that SARS-CoV-2 is transmissible via aerosols, though quantification of virus-laden aerosols at low concentrations presents a challenge. Wastewater surveillance of SARS-CoV-2 can be an effective tool in early detection of outbreak and determination of COVID-19 prevalence within a population, complementing clinical testing and providing decision makers guidance on restricting or relaxing movement. While poor air quality increases susceptibility to diseases, evidence for air pollution impact on COVID-19 infectivity is not available as infections are dynamically changing worldwide. Solid waste generated by households with infected individuals during the lockdown period may facilitate the spread of COVID-19 via fomite transmission route but has received little attention from the scientific community. Water bodies receiving raw sewage may pose risk of infection but this has not been investigated to date. Overall, our understanding of the environmental perspective of SARS-CoV-2 is imperative to detecting outbreak and predicting pandemic severity, allowing us to be equipped with the right tools to curb any future pandemic.
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Affiliation(s)
- Khaled Al Huraimel
- Division of Consultancy, Research & Innovation (CRI), Sharjah Environment Company - Bee'ah, Sharjah, United Arab Emirates
| | - Mohamed Alhosani
- Division of Consultancy, Research & Innovation (CRI), Sharjah Environment Company - Bee'ah, Sharjah, United Arab Emirates
| | - Shabana Kunhabdulla
- Division of Consultancy, Research & Innovation (CRI), Sharjah Environment Company - Bee'ah, Sharjah, United Arab Emirates
| | - Mohammed Hashem Stietiya
- Division of Consultancy, Research & Innovation (CRI), Sharjah Environment Company - Bee'ah, Sharjah, United Arab Emirates.
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14
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Guerrero-Latorre L, Ballesteros I, Villacrés-Granda I, Granda MG, Freire-Paspuel B, Ríos-Touma B. SARS-CoV-2 in river water: Implications in low sanitation countries. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 743:140832. [PMID: 32679506 DOI: 10.1101/2020.06.14.20131201] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2020] [Revised: 07/06/2020] [Accepted: 07/07/2020] [Indexed: 05/24/2023]
Abstract
Since the beginning of COVID-19 pandemic studies on viral shedding have reported that this virus is excreted in feces in most patients. High viral loads are found at the sewage pipeline or at the entrance of wastewater treatment plants from cities where the number of COVID-19 cases are significant. In Quito (Ecuador) as in many other cities worldwide, wastewater is directly discharged into natural waters. The aim of this study was to evaluate SARS-CoV-2 presence in urban streams from a low sanitation context. Three river locations along the urban rivers of Quito were sampled on the 5th of June during a peak of COVID-19 cases. River samples were evaluated for water quality parameters and afterwards, concentrated for viral analysis using skimmed milk flocculation method. The viral concentrates were quantified for SARS-CoV-2 (N1 and N2 target regions) and Human Adenovirus as a human viral indicator. The results showed that SARS-CoV-2 was detected for both target regions in all samples analyzed in a range of 2,91E+05 to 3,19E+06 GC/L for N1 and from 2,07E+05 to 2,22E+06 GC/L for N2. The high values detected in natural waters from a low sanitation region have several implications in health and ecology that should be further assessed.
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Affiliation(s)
- Laura Guerrero-Latorre
- Grupo de Investigación en Biodiversidad, Medio Ambiente y Salud, Facultad de Ingenierías y Ciencias Aplicadas, Universidad de Las Américas, Ecuador; Department of Biology, Area of Microbiology, University of Girona, Spain
| | - Isabel Ballesteros
- Grupo de Investigación en Biodiversidad, Medio Ambiente y Salud, Facultad de Ingenierías y Ciencias Aplicadas, Universidad de Las Américas, Ecuador
| | | | | | | | - Blanca Ríos-Touma
- Grupo de Investigación en Biodiversidad, Medio Ambiente y Salud, Facultad de Ingenierías y Ciencias Aplicadas, Universidad de Las Américas, Ecuador.
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15
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Guerrero-Latorre L, Ballesteros I, Villacrés-Granda I, Granda MG, Freire-Paspuel B, Ríos-Touma B. SARS-CoV-2 in river water: Implications in low sanitation countries. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 743:140832. [PMID: 32679506 PMCID: PMC7343659 DOI: 10.1016/j.scitotenv.2020.140832] [Citation(s) in RCA: 165] [Impact Index Per Article: 33.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2020] [Revised: 07/06/2020] [Accepted: 07/07/2020] [Indexed: 04/15/2023]
Abstract
Since the beginning of COVID-19 pandemic studies on viral shedding have reported that this virus is excreted in feces in most patients. High viral loads are found at the sewage pipeline or at the entrance of wastewater treatment plants from cities where the number of COVID-19 cases are significant. In Quito (Ecuador) as in many other cities worldwide, wastewater is directly discharged into natural waters. The aim of this study was to evaluate SARS-CoV-2 presence in urban streams from a low sanitation context. Three river locations along the urban rivers of Quito were sampled on the 5th of June during a peak of COVID-19 cases. River samples were evaluated for water quality parameters and afterwards, concentrated for viral analysis using skimmed milk flocculation method. The viral concentrates were quantified for SARS-CoV-2 (N1 and N2 target regions) and Human Adenovirus as a human viral indicator. The results showed that SARS-CoV-2 was detected for both target regions in all samples analyzed in a range of 2,91E+05 to 3,19E+06 GC/L for N1 and from 2,07E+05 to 2,22E+06 GC/L for N2. The high values detected in natural waters from a low sanitation region have several implications in health and ecology that should be further assessed.
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Affiliation(s)
- Laura Guerrero-Latorre
- Grupo de Investigación en Biodiversidad, Medio Ambiente y Salud, Facultad de Ingenierías y Ciencias Aplicadas, Universidad de Las Américas, Ecuador; Department of Biology, Area of Microbiology, University of Girona, Spain
| | - Isabel Ballesteros
- Grupo de Investigación en Biodiversidad, Medio Ambiente y Salud, Facultad de Ingenierías y Ciencias Aplicadas, Universidad de Las Américas, Ecuador
| | | | | | | | - Blanca Ríos-Touma
- Grupo de Investigación en Biodiversidad, Medio Ambiente y Salud, Facultad de Ingenierías y Ciencias Aplicadas, Universidad de Las Américas, Ecuador.
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16
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Collivignarelli MC, Collivignarelli C, Carnevale Miino M, Abbà A, Pedrazzani R, Bertanza G. SARS-CoV-2 in sewer systems and connected facilities. PROCESS SAFETY AND ENVIRONMENTAL PROTECTION : TRANSACTIONS OF THE INSTITUTION OF CHEMICAL ENGINEERS, PART B 2020; 143:196-203. [PMID: 32834559 PMCID: PMC7334965 DOI: 10.1016/j.psep.2020.06.049] [Citation(s) in RCA: 64] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/28/2020] [Revised: 06/28/2020] [Accepted: 06/30/2020] [Indexed: 05/02/2023]
Abstract
As for the SARS coronavirus in the 2003 epidemic, the presence of SARS-CoV-2 has been demonstrated in faeces and, in some cases, urine of infected people, as well as in wastewater. This paper proposes a critical review of the state of the art regarding studies on the presence of SARS-CoV-2 in wastewater and sewage sludge, the factors affecting its inactivation and the main proposed treatments. In-vitro tests demonstrated low resistance of SARS-CoV-2 to high temperature, while even significant changes in pH would not seem to determine the disappearance of the virus. In real wastewater and in sewage sludge, to date studies on the influence of the different parameters on the inactivation of SARS-CoV-2 are not available. Therefore, studies involving other HCoVs such as SARS-CoV and HCoV-229E have been also considered, in order to formulate a hypothesis regarding its behaviour in sewage and throughout the steps of biological treatments in WWTPs. Finally, SARS-CoV-2 in wastewater might track the epidemic trends: although being extremely promising, an effective and wide application of this approach requires a deeper knowledge of the amounts of viruses excreted through the faeces and the actual detectability of viral RNA in sewage.
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Affiliation(s)
- Maria Cristina Collivignarelli
- Department of Civil Engineering and Architecture, University of Pavia, Via Ferrata 1, 27100, Pavia, Italy
- Interdepartmental Centre for Water Research, University of Pavia, Via Ferrata 3, 27100, Pavia, Italy
| | - Carlo Collivignarelli
- Department of Civil, Environmental, Architectural Engineering and Mathematics, University of Brescia, Via Branze 43, 25123, Brescia, Italy
| | - Marco Carnevale Miino
- Department of Civil Engineering and Architecture, University of Pavia, Via Ferrata 1, 27100, Pavia, Italy
| | - Alessandro Abbà
- Department of Civil, Environmental, Architectural Engineering and Mathematics, University of Brescia, Via Branze 43, 25123, Brescia, Italy
| | - Roberta Pedrazzani
- Department of Mechanical and Industrial Engineering, University of Brescia, via Branze 38, I-25123, Brescia, Italy
| | - Giorgio Bertanza
- Department of Civil, Environmental, Architectural Engineering and Mathematics, University of Brescia, Via Branze 43, 25123, Brescia, Italy
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17
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Ahmed W, Bertsch PM, Bivins A, Bibby K, Farkas K, Gathercole A, Haramoto E, Gyawali P, Korajkic A, McMinn BR, Mueller JF, Simpson SL, Smith WJM, Symonds EM, Thomas KV, Verhagen R, Kitajima M. Comparison of virus concentration methods for the RT-qPCR-based recovery of murine hepatitis virus, a surrogate for SARS-CoV-2 from untreated wastewater. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 739:139960. [PMID: 32758945 PMCID: PMC7273154 DOI: 10.1016/j.scitotenv.2020.139960] [Citation(s) in RCA: 367] [Impact Index Per Article: 73.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/22/2020] [Revised: 06/01/2020] [Accepted: 06/02/2020] [Indexed: 04/13/2023]
Abstract
There is currently a clear benefit for many countries to utilize wastewater-based epidemiology (WBE) as part of ongoing measures to manage the coronavirus disease 2019 (COVID-19) global pandemic. Since most wastewater virus concentration methods were developed and validated for nonenveloped viruses, it is imperative to determine the efficiency of the most commonly used methods for the enveloped severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Municipal wastewater seeded with a human coronavirus (CoV) surrogate, murine hepatitis virus (MHV), was used to test the efficiency of seven wastewater virus concentration methods: (A-C) adsorption-extraction with three different pre-treatment options, (D-E) centrifugal filter device methods with two different devices, (F) polyethylene glycol (PEG 8000) precipitation, and (G) ultracentrifugation. MHV was quantified by reverse-transcription quantitative polymerase chain reaction and the recovery efficiency was calculated for each method. The mean MHV recoveries ranged from 26.7 to 65.7%. The most efficient methods were adsorption-extraction methods with MgCl2 pre-treatment (Method C), and without pre-treatment (Method B). The third most efficient method used the Amicon® Ultra-15 centrifugal filter device (Method D) and its recovery efficiency was not statistically different from the most efficient methods. The methods with the worst recovery efficiency included the adsorption-extraction method with acidification (A), followed by PEG precipitation (F). Our results suggest that absorption-extraction methods with minimal or without pre-treatment can provide suitably rapid, cost-effective and relatively straightforward recovery of enveloped viruses in wastewater. The MHV is a promising process control for SARS-CoV-2 surveillance and can be used as a quality control measure to support community-level epidemic mitigation and risk assessment.
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Affiliation(s)
- Warish Ahmed
- CSIRO Land and Water, Ecosciences Precinct, 41 Boggo Road, Dutton Park, QLD, 4102, Australia.
| | - Paul M Bertsch
- CSIRO Land and Water, Ecosciences Precinct, 41 Boggo Road, Dutton Park, QLD, 4102, Australia
| | - Aaron Bivins
- Environmental Change Initiative, University of Notre Dame, 721 Flanner Hall, Notre Dame, IN 46556, USA
| | - Kyle Bibby
- Environmental Change Initiative, University of Notre Dame, 721 Flanner Hall, Notre Dame, IN 46556, USA
| | - Kata Farkas
- School of Ocean Sciences, Bangor University, Menai Bridge, Anglesey LL59 5AB, UK
| | - Amy Gathercole
- ComPath, South Australian Health and Medical Research Institute, Adelaide, SA 5000, Australia
| | - Eiji Haramoto
- Interdisciplinary Center for River Basin Environment, University of Yamanashi, 4 - 3 -11 Takeda, Kofu, Yamanashi 400-8511, Japan
| | - Pradip Gyawali
- Institute of Environmental Science and Research Ltd. (ESR), Porirua 5240, New Zealand
| | - Asja Korajkic
- United States Environmental Protection Agency, Office of Research and Development, 26W Martin Luther King Jr. Drive, Cincinnati, OH 45268, USA
| | - Brian R McMinn
- United States Environmental Protection Agency, Office of Research and Development, 26W Martin Luther King Jr. Drive, Cincinnati, OH 45268, USA
| | - Jochen F Mueller
- Queensland Alliance for Environmental Health Sciences (QAEHS), University of Queensland, 20 Cornwall Street, Woolloongabba, QLD 4102, Australia
| | | | - Wendy J M Smith
- CSIRO Agriculture and Food, Queensland Bioscience Precinct, St Lucia, QLD 4067, Australia
| | - Erin M Symonds
- College of Marine Science, University of South Florida, 140 Seventh Avenue South, St. Petersburg, FL 33701, USA
| | - Kevin V Thomas
- Queensland Alliance for Environmental Health Sciences (QAEHS), University of Queensland, 20 Cornwall Street, Woolloongabba, QLD 4102, Australia
| | - Rory Verhagen
- Queensland Alliance for Environmental Health Sciences (QAEHS), University of Queensland, 20 Cornwall Street, Woolloongabba, QLD 4102, Australia
| | - Masaaki Kitajima
- Division of Environmental Engineering, Faculty of Engineering, Hokkaido University, North 13 West 8, Kita-ku, Sapporo, Hokkaido 060-0032, Japan
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18
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Mandal P, Gupta AK, Dubey BK. A review on presence, survival, disinfection/removal methods of coronavirus in wastewater and progress of wastewater-based epidemiology. JOURNAL OF ENVIRONMENTAL CHEMICAL ENGINEERING 2020; 8:104317. [PMID: 32834991 PMCID: PMC7403125 DOI: 10.1016/j.jece.2020.104317] [Citation(s) in RCA: 43] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/02/2020] [Revised: 07/24/2020] [Accepted: 07/28/2020] [Indexed: 05/18/2023]
Abstract
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) caused the global pandemic coronavirus 2019 disease (COVID-19). The outbreak of COVID-19 as Public Health Emergency of International Concern is declared by World Health Organization on January 30, 2020. The known route of transmission is due to direct contact or via respiratory droplets. Recently, several studies reported SARS-CoV-2 ribonucleic acid (RNA) in wastewater treatment plant samples. The presence of SARS-CoV-2 RNA in wastewater may predict COVID-19 occurrence qualitatively and quantitatively. The concept is known as wastewater-based epidemiology (WBE) or sewage epidemiology. The present study reviewed the presence of coronavirus in wastewater and investigations relating to WBE development as a tool to detect COVID-19 community transmission. Few articles reported a correlation of SARS-CoV-2 RNA concentration in wastewater with the number of COVID-19 cases, whereas few reported higher prediction by wastewater surveillance than confirmed cases. The application of WBE is still in a preliminary stage but has the potential to indicate an early sign of transmission. The knowledge of persistence of coronavirus in municipal and hospital wastewater is needed for the application of WBE and to understand the chances of transmission. The studies reported more prolonged survival of coronavirus in low-temperature wastewater. Studies relating to the inactivation of coronavirus by disinfectants and removal of coronavirus are also presented. Research on the performance of the commonly adopted disinfection technologies in inactivating SARS-CoV-2 in municipal and hospital wastewater is required to reduce the risk associated with municipal and hospital wastewater.
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Affiliation(s)
- Pubali Mandal
- Environmental Engineering Division, Department of Civil Engineering, Indian Institute of Technology Kharagpur, Kharagpur, 721302, India
| | - Ashok K Gupta
- Environmental Engineering Division, Department of Civil Engineering, Indian Institute of Technology Kharagpur, Kharagpur, 721302, India
| | - Brajesh K Dubey
- Environmental Engineering Division, Department of Civil Engineering, Indian Institute of Technology Kharagpur, Kharagpur, 721302, India
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19
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Farkas K, Hillary LS, Malham SK, McDonald JE, Jones DL. Wastewater and public health: the potential of wastewater surveillance for monitoring COVID-19. CURRENT OPINION IN ENVIRONMENTAL SCIENCE & HEALTH 2020; 17:14-20. [PMID: 32835157 PMCID: PMC7291992 DOI: 10.1016/j.coesh.2020.06.001] [Citation(s) in RCA: 115] [Impact Index Per Article: 23.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
Pathogenic viruses represent one of the greatest threats to human well-being. As evidenced by the COVID-19 global pandemic, however, halting the spread of highly contagious diseases is notoriously difficult. Successful control strategies therefore have to rely on effective surveillance. Here, we describe how monitoring wastewater from urban areas can be used to detect the arrival and subsequent decline of pathogens, such as SARS-CoV-2. As the amount of virus shed in faeces and urine varies largely from person to person, it is very difficult to quantitatively determine the number of people who are infected in the population. More research on the surveillance of viruses in wastewater using accurate and validated methods, as well as subsequent risk analysis and modelling is paramount in understanding the dynamics of viral outbreaks.
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Affiliation(s)
- Kata Farkas
- School of Ocean Sciences, Bangor University, Menai Bridge, Anglesey, UK
| | - Luke S Hillary
- School of Natural Sciences, Bangor University, Deiniol Road, Bangor, Gwynedd, UK
| | - Shelagh K Malham
- School of Ocean Sciences, Bangor University, Menai Bridge, Anglesey, UK
| | - James E McDonald
- School of Natural Sciences, Bangor University, Deiniol Road, Bangor, Gwynedd, UK
| | - David L Jones
- School of Natural Sciences, Bangor University, Deiniol Road, Bangor, Gwynedd, UK
- UWA School of Agriculture and Environment, The University of Western Australia, Crawley, WA, 6009, Australia
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20
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Thompson JR, Nancharaiah YV, Gu X, Lee WL, Rajal VB, Haines MB, Girones R, Ng LC, Alm EJ, Wuertz S. Making waves: Wastewater surveillance of SARS-CoV-2 for population-based health management. WATER RESEARCH 2020; 184:116181. [PMID: 32707307 PMCID: PMC7357518 DOI: 10.1016/j.watres.2020.116181] [Citation(s) in RCA: 126] [Impact Index Per Article: 25.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2020] [Revised: 07/11/2020] [Accepted: 07/13/2020] [Indexed: 05/18/2023]
Abstract
Worldwide, clinical data remain the gold standard for disease surveillance and tracking. However, such data are limited due to factors such as reporting bias and inability to track asymptomatic disease carriers. Disease agents are excreted in the urine and feces of infected individuals regardless of disease symptom severity. Wastewater surveillance - that is, monitoring disease via human effluent - represents a valuable complement to clinical approaches. Because wastewater is relatively inexpensive and easy to collect and can be monitored at different levels of population aggregation as needed, wastewater surveillance can offer a real-time, cost-effective view of a community's health that is independent of biases associated with case-reporting. For SARS-CoV-2 and other disease-causing agents we envision an aggregate wastewater-monitoring system at the level of a wastewater treatment plant and exploratory or confirmatory monitoring of the sewerage system at the neighborhood scale to identify or confirm clusters of infection or assess impact of control measures where transmission has been established. Implementation will require constructing a framework with collaborating government agencies, public or private utilities, and civil society organizations for appropriate use of data collected from wastewater, identification of an appropriate scale of sample collection and aggregation to balance privacy concerns and risk of stigmatization with public health preservation, and consideration of the social implications of wastewater surveillance.
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Affiliation(s)
- Janelle R Thompson
- Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University (NTU), Singapore; Asian School of the Environment, NTU, Singapore; Campus for Research Excellence and Technological Enterprise (CREATE), Singapore.
| | - Yarlagadda V Nancharaiah
- Biofouling and Biofilm Processes, Water and Steam Chemistry Division, Chemistry Group, Bhabha Atomic Research Centre, Kalpakkam 603102, India; Homi Bhabha National Institute, BARC Training School Complex, Anushakti Nagar, Trombay, Mumbai 400 094, India
| | - Xiaoqiong Gu
- Campus for Research Excellence and Technological Enterprise (CREATE), Singapore; Singapore-MIT Alliance for Research and Technology, National University of Singapore, Singapore
| | - Wei Lin Lee
- Campus for Research Excellence and Technological Enterprise (CREATE), Singapore; Singapore-MIT Alliance for Research and Technology, National University of Singapore, Singapore
| | - Verónica B Rajal
- Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University (NTU), Singapore; Instituto de Investigaciones para la Industria Química (INIQUI), CONICET, Universidad Nacional de Salta (UNSa), Av. Bolivia 5150, Salta 4400, Argentina; Facultad de Ingeniería, UNSa, Salta, Argentina
| | - Monamie B Haines
- Campus for Research Excellence and Technological Enterprise (CREATE), Singapore; School of Social Sciences, Sociology Division, NTU, Singapore
| | - Rosina Girones
- Section of Microbiology, Virology and Biotechnology, Department of Genetics, Microbiology and Statistics, Faculty of Biology, University of Barcelona, Diagonal, 643, 08028-Barcelona, Spain
| | - Lee Ching Ng
- Environmental Health Institute, National Environment Agency, Singapore
| | - Eric J Alm
- Campus for Research Excellence and Technological Enterprise (CREATE), Singapore; Singapore-MIT Alliance for Research and Technology, National University of Singapore, Singapore; Center for Microbiome Informatics and Therapeutics, Departments of Biological Engineering and Civil and Environmental Engineering, Massachusetts Institute of Technology, United States; Biobot Analytics, Cambridge MA, United States
| | - Stefan Wuertz
- Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University (NTU), Singapore; Campus for Research Excellence and Technological Enterprise (CREATE), Singapore; School of Civil and Environmental Engineering, NTU, Singapore.
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21
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Venugopal A, Ganesan H, Sudalaimuthu Raja SS, Govindasamy V, Arunachalam M, Narayanasamy A, Sivaprakash P, Rahman PKSM, Gopalakrishnan AV, Siama Z, Vellingiri B. Novel wastewater surveillance strategy for early detection of coronavirus disease 2019 hotspots. CURRENT OPINION IN ENVIRONMENTAL SCIENCE & HEALTH 2020; 17:8-13. [PMID: 32501429 PMCID: PMC7245214 DOI: 10.1016/j.coesh.2020.05.003] [Citation(s) in RCA: 47] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/17/2023]
Abstract
The novel coronavirus disease 2019, a pandemic of global concern, caused by the novel severe acute respiratory syndrome coronavirus 2 has severely revealed the need for public monitoring and efficient screening techniques. Despite the various advancements made in the medical and research field, containment of this virus has proven to be difficult on several levels. As such, it is a necessary requirement to identify possible hotspots in the early stages of any disease. Based on previous studies carried out on coronaviruses, there is a high likelihood that severe acute respiratory syndrome coronavirus 2 may also survive in wastewater. Hence, we propose the use of nanofiber filters as a wastewater pretreatment routine and upgradation of existing wastewater evaluation and treatment systems to serve as a beneficial surveillance tool.
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Affiliation(s)
- Anila Venugopal
- Human Molecular Cytogenetics and Stem Cell Laboratory, Department of Human Genetics and Molecular Biology, Bharathiar University, Coimbatore 641046, Tamil Nadu, India
| | - Harsha Ganesan
- Human Molecular Cytogenetics and Stem Cell Laboratory, Department of Human Genetics and Molecular Biology, Bharathiar University, Coimbatore 641046, Tamil Nadu, India
| | - Suresh Selvapuram Sudalaimuthu Raja
- Department of Microbiology, Government Arts and Science College (Affiliated to Bharathidasan University, Trichy), Perambalur 621107, Tamil Nadu, India
| | | | - Manimekalan Arunachalam
- Department of Environmental Sciences, Bharathiar University, Coimbatore 641 046, Tamil Nadu, India
| | - Arul Narayanasamy
- Disease Proteomics Laboratory, Department of Zoology, Bharathiar University, Coimbatore 641 046, Tamil Nadu, India
| | - Palanisamy Sivaprakash
- Centre for Environmental Awareness, Department of Mechanical Engineering, Dr.N.G.P. Institute of Technology, Coimbatore 641048, Tamil Nadu, India
| | - Pattanathu K S M Rahman
- Deploy Lead - Centre for Enzyme Innovation, Office No: 6.06, King Henry Building, School of Biological Science, University of Portsmouth, Portsmouth PO1 2DY, UK
| | - Abilash Valsala Gopalakrishnan
- Department of Biomedical Sciences, School of Biosciences and Technology, Vellore Institute of Technology, VIT, Vellore 632014, Tamil Nadu, India
| | - Zothan Siama
- Department of Zoology, School of Life-science, Mizoram University, Aizawl 796004, Mizoram, India
| | - Balachandar Vellingiri
- Human Molecular Cytogenetics and Stem Cell Laboratory, Department of Human Genetics and Molecular Biology, Bharathiar University, Coimbatore 641046, Tamil Nadu, India
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