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For: Cornell MJ, Alam I, Soanes DM, Wong HM, Hedeler C, Paton NW, Rattray M, Hubbard SJ, Talbot NJ, Oliver SG. Comparative genome analysis across a kingdom of eukaryotic organisms: specialization and diversification in the fungi. Genes Dev 2007;17:1809-22. [PMID: 17984228 PMCID: PMC2099590 DOI: 10.1101/gr.6531807] [Citation(s) in RCA: 79] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2007] [Accepted: 09/17/2007] [Indexed: 11/24/2022]
Number Cited by Other Article(s)
1
Yang Y, Xiong D, Zhao D, Huang H, Tian C. Genome sequencing of Elaeocarpus spp. stem blight pathogen Pseudocryphonectria elaeocarpicola reveals potential adaptations to colonize woody bark. BMC Genomics 2024;25:714. [PMID: 39048950 PMCID: PMC11267912 DOI: 10.1186/s12864-024-10615-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2024] [Accepted: 07/12/2024] [Indexed: 07/27/2024]  Open
2
Rahmat E, Yu JS, Lee BS, Lee J, Ban Y, Yim NH, Park JH, Kang CH, Kim KH, Kang Y. Secondary metabolites and transcriptomic analysis of novel pulcherrimin producer Metschnikowia persimmonesis KIOM G15050: A potent and safe food biocontrol agent. Heliyon 2024;10:e28464. [PMID: 38571591 PMCID: PMC10988027 DOI: 10.1016/j.heliyon.2024.e28464] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2023] [Revised: 03/18/2024] [Accepted: 03/19/2024] [Indexed: 04/05/2024]  Open
3
Xu L, Li J, Gonzalez Ramos VM, Lyra C, Wiebenga A, Grigoriev IV, de Vries RP, Mäkelä MR, Peng M. Genome-wide prediction and transcriptome analysis of sugar transporters in four ascomycete fungi. BIORESOURCE TECHNOLOGY 2024;391:130006. [PMID: 37952592 DOI: 10.1016/j.biortech.2023.130006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2023] [Revised: 11/09/2023] [Accepted: 11/09/2023] [Indexed: 11/14/2023]
4
Bornstein K, Gryan G, Chang ES, Marchler-Bauer A, Schneider VA. The NIH Comparative Genomics Resource: addressing the promises and challenges of comparative genomics on human health. BMC Genomics 2023;24:575. [PMID: 37759191 PMCID: PMC10523801 DOI: 10.1186/s12864-023-09643-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2023] [Accepted: 08/31/2023] [Indexed: 09/29/2023]  Open
5
Genome-wide association mapping reveals genes underlying population-level metabolome diversity in a fungal crop pathogen. BMC Biol 2022;20:224. [PMID: 36209159 PMCID: PMC9548119 DOI: 10.1186/s12915-022-01422-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2022] [Accepted: 09/27/2022] [Indexed: 11/12/2022]  Open
6
Perry A, Wachowiak W, Beaton J, Iason G, Cottrell J, Cavers S. Identifying and testing marker-trait associations for growth and phenology in three pine species: Implications for genomic prediction. Evol Appl 2022;15:330-348. [PMID: 35233251 PMCID: PMC8867712 DOI: 10.1111/eva.13345] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2021] [Revised: 12/08/2021] [Accepted: 12/09/2021] [Indexed: 12/02/2022]  Open
7
Species concepts of Dothideomycetes: classification, phylogenetic inconsistencies and taxonomic standardization. FUNGAL DIVERS 2021. [DOI: 10.1007/s13225-021-00485-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
8
Wu P, Yao T, Ren Y, Ye J, Qing Y, Li Q, Gui M. Evolutionary Insights Into Two Widespread Ectomycorrhizal Fungi (Pisolithus) From Comparative Analysis of Mitochondrial Genomes. Front Microbiol 2021;12:583129. [PMID: 34290675 PMCID: PMC8287656 DOI: 10.3389/fmicb.2021.583129] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2020] [Accepted: 06/16/2021] [Indexed: 11/18/2022]  Open
9
Wu P, Bao Z, Tu W, Li L, Xiong C, Jin X, Li P, Gui M, Huang W, Li Q. The mitogenomes of two saprophytic Boletales species (Coniophora) reveals intron dynamics and accumulation of plasmid-derived and non-conserved genes. Comput Struct Biotechnol J 2020;19:401-414. [PMID: 33489009 PMCID: PMC7804350 DOI: 10.1016/j.csbj.2020.12.041] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2020] [Revised: 12/25/2020] [Accepted: 12/26/2020] [Indexed: 02/02/2023]  Open
10
Aliyu H, Gorte O, Zhou X, Neumann A, Ochsenreither K. In silico Proteomic Analysis Provides Insights Into Phylogenomics and Plant Biomass Deconstruction Potentials of the Tremelalles. Front Bioeng Biotechnol 2020;8:226. [PMID: 32318549 PMCID: PMC7147457 DOI: 10.3389/fbioe.2020.00226] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2020] [Accepted: 03/05/2020] [Indexed: 01/27/2023]  Open
11
Wu B, Cox MP. Greater genetic and regulatory plasticity of retained duplicates in Epichloë endophytic fungi. Mol Ecol 2019;28:5103-5114. [PMID: 31614039 PMCID: PMC7004115 DOI: 10.1111/mec.15275] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2019] [Accepted: 10/11/2019] [Indexed: 12/12/2022]
12
Peng M, Aguilar-Pontes MV, de Vries RP, Mäkelä MR. In Silico Analysis of Putative Sugar Transporter Genes in Aspergillus niger Using Phylogeny and Comparative Transcriptomics. Front Microbiol 2018;9:1045. [PMID: 29867914 PMCID: PMC5968117 DOI: 10.3389/fmicb.2018.01045] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2018] [Accepted: 05/02/2018] [Indexed: 12/11/2022]  Open
13
Marshall AC, Bond CS, Bruning JB. Structure of Aspergillus fumigatus Cytosolic Thiolase: Trapped Tetrahedral Reaction Intermediates and Activation by Monovalent Cations. ACS Catal 2018. [DOI: 10.1021/acscatal.7b02873] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
14
Ghosh S, Kanwar P, Jha G. Identification of candidate pathogenicity determinants of Rhizoctonia solani AG1-IA, which causes sheath blight disease in rice. Curr Genet 2017;64:729-740. [PMID: 29196814 DOI: 10.1007/s00294-017-0791-7] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2017] [Revised: 11/24/2017] [Accepted: 11/27/2017] [Indexed: 01/04/2023]
15
Lara-Márquez A, Oyama K, Zavala-Páramo MG, Villa-Rivera MG, Conejo-Saucedo U, Cano-Camacho H. Evolutionary Analysis of Pectin Lyases of the Genus Colletotrichum. J Mol Evol 2017;85:120-136. [PMID: 29071357 DOI: 10.1007/s00239-017-9812-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2017] [Accepted: 10/11/2017] [Indexed: 10/18/2022]
16
Phylogenetic relationships of ascomycetes and basidiomycetes based on comparative genomics analysis. Genes Genomics 2017. [DOI: 10.1007/s13258-017-0595-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
17
Oliva R, Quibod IL. Immunity and starvation: new opportunities to elevate disease resistance in crops. CURRENT OPINION IN PLANT BIOLOGY 2017;38:84-91. [PMID: 28505583 DOI: 10.1016/j.pbi.2017.04.020] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2017] [Revised: 04/27/2017] [Accepted: 04/30/2017] [Indexed: 05/18/2023]
18
Aylward J, Steenkamp ET, Dreyer LL, Roets F, Wingfield BD, Wingfield MJ. A plant pathology perspective of fungal genome sequencing. IMA Fungus 2017;8:1-15. [PMID: 28824836 PMCID: PMC5493528 DOI: 10.5598/imafungus.2017.08.01.01] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2016] [Accepted: 01/19/2017] [Indexed: 10/26/2022]  Open
19
Fernández Núñez L, Ocampo J, Gottlieb AM, Rossi S, Moreno S. Multiple isoforms for the catalytic subunit of PKA in the basal fungal lineage Mucor circinelloides. Fungal Biol 2016;120:1493-1508. [PMID: 27890086 DOI: 10.1016/j.funbio.2016.07.013] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2015] [Revised: 06/20/2016] [Accepted: 07/21/2016] [Indexed: 12/18/2022]
20
Morel G, Sterck L, Swennen D, Marcet-Houben M, Onesime D, Levasseur A, Jacques N, Mallet S, Couloux A, Labadie K, Amselem J, Beckerich JM, Henrissat B, Van de Peer Y, Wincker P, Souciet JL, Gabaldón T, Tinsley CR, Casaregola S. Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts. Sci Rep 2015;5:11571. [PMID: 26108467 PMCID: PMC4479816 DOI: 10.1038/srep11571] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2015] [Accepted: 05/29/2015] [Indexed: 12/13/2022]  Open
21
Morales-Cruz A, Amrine KCH, Blanco-Ulate B, Lawrence DP, Travadon R, Rolshausen PE, Baumgartner K, Cantu D. Distinctive expansion of gene families associated with plant cell wall degradation, secondary metabolism, and nutrient uptake in the genomes of grapevine trunk pathogens. BMC Genomics 2015;16:469. [PMID: 26084502 PMCID: PMC4472170 DOI: 10.1186/s12864-015-1624-z] [Citation(s) in RCA: 107] [Impact Index Per Article: 11.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2015] [Accepted: 05/06/2015] [Indexed: 11/10/2022]  Open
22
Gabriel F, Accoceberry I, Bessoule JJ, Salin B, Lucas-Guérin M, Manon S, Dementhon K, Noël T. A Fox2-dependent fatty acid ß-oxidation pathway coexists both in peroxisomes and mitochondria of the ascomycete yeast Candida lusitaniae. PLoS One 2014;9:e114531. [PMID: 25486052 PMCID: PMC4259357 DOI: 10.1371/journal.pone.0114531] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2014] [Accepted: 11/10/2014] [Indexed: 01/24/2023]  Open
23
Petryk N, Zhou YF, Sybirna K, Mucchielli MH, Guiard B, Bao WG, Stasyk OV, Stasyk OG, Krasovska OS, Budin K, Reymond N, Imbeaud S, Coudouel S, Delacroix H, Sibirny A, Bolotin-Fukuhara M. Functional study of the Hap4-like genes suggests that the key regulators of carbon metabolism HAP4 and oxidative stress response YAP1 in yeast diverged from a common ancestor. PLoS One 2014;9:e112263. [PMID: 25479159 PMCID: PMC4257542 DOI: 10.1371/journal.pone.0112263] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2014] [Accepted: 10/06/2014] [Indexed: 12/05/2022]  Open
24
Wisecaver JH, Slot JC, Rokas A. The evolution of fungal metabolic pathways. PLoS Genet 2014;10:e1004816. [PMID: 25474404 PMCID: PMC4256263 DOI: 10.1371/journal.pgen.1004816] [Citation(s) in RCA: 116] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2014] [Accepted: 10/12/2014] [Indexed: 01/07/2023]  Open
25
Hughes DP. On the origins of parasite-extended phenotypes. Integr Comp Biol 2014;54:210-7. [PMID: 24944117 DOI: 10.1093/icb/icu079] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]  Open
26
Guo M, Zhou Q, Zhou Y, Yang L, Liu T, Yang J, Chen Y, Su L, Xu J, Chen J, Liu F, Chen J, Dai W, Ni P, Fang C, Yang R. Genomic evolution of 11 type strains within family Planctomycetaceae. PLoS One 2014;9:e86752. [PMID: 24489782 PMCID: PMC3906078 DOI: 10.1371/journal.pone.0086752] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2013] [Accepted: 12/16/2013] [Indexed: 11/18/2022]  Open
27
Wang FQ, Zhong J, Zhao Y, Xiao J, Liu J, Dai M, Zheng G, Zhang L, Yu J, Wu J, Duan B. Genome sequencing of high-penicillin producing industrial strain of Penicillium chrysogenum. BMC Genomics 2014;15 Suppl 1:S11. [PMID: 24564352 PMCID: PMC4046689 DOI: 10.1186/1471-2164-15-s1-s11] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]  Open
28
Noble LM, Andrianopoulos A. Fungal genes in context: genome architecture reflects regulatory complexity and function. Genome Biol Evol 2013;5:1336-52. [PMID: 23699226 PMCID: PMC3730340 DOI: 10.1093/gbe/evt077] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]  Open
29
Richards TA, Talbot NJ. Horizontal gene transfer in osmotrophs: playing with public goods. Nat Rev Microbiol 2013;11:720-7. [DOI: 10.1038/nrmicro3108] [Citation(s) in RCA: 71] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
30
Yockteng R, Almeida AMR, Morioka K, Alvarez-Buylla ER, Specht CD. Molecular evolution and patterns of duplication in the SEP/AGL6-like lineage of the Zingiberales: a proposed mechanism for floral diversification. Mol Biol Evol 2013;30:2401-22. [PMID: 23938867 DOI: 10.1093/molbev/mst137] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]  Open
31
Physiological role of Acyl coenzyme A synthetase homologs in lipid metabolism in Neurospora crassa. EUKARYOTIC CELL 2013;12:1244-57. [PMID: 23873861 DOI: 10.1128/ec.00079-13] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
32
Cantu D, Segovia V, MacLean D, Bayles R, Chen X, Kamoun S, Dubcovsky J, Saunders DGO, Uauy C. Genome analyses of the wheat yellow (stripe) rust pathogen Puccinia striiformis f. sp. tritici reveal polymorphic and haustorial expressed secreted proteins as candidate effectors. BMC Genomics 2013;14:270. [PMID: 23607900 PMCID: PMC3640902 DOI: 10.1186/1471-2164-14-270] [Citation(s) in RCA: 171] [Impact Index Per Article: 15.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2012] [Accepted: 04/11/2013] [Indexed: 11/10/2022]  Open
33
Liu G, Qin Y, Li Z, Qu Y. Development of highly efficient, low-cost lignocellulolytic enzyme systems in the post-genomic era. Biotechnol Adv 2013;31:962-75. [PMID: 23507038 DOI: 10.1016/j.biotechadv.2013.03.001] [Citation(s) in RCA: 59] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2012] [Revised: 03/09/2013] [Accepted: 03/10/2013] [Indexed: 11/19/2022]
34
Stobbe MD, Jansen GA, Moerland PD, van Kampen AHC. Knowledge representation in metabolic pathway databases. Brief Bioinform 2012. [PMID: 23202525 DOI: 10.1093/bib/bbs060] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]  Open
35
Choi J, Cheong K, Jung K, Jeon J, Lee GW, Kang S, Kim S, Lee YW, Lee YH. CFGP 2.0: a versatile web-based platform for supporting comparative and evolutionary genomics of fungi and Oomycetes. Nucleic Acids Res 2012. [PMID: 23193288 PMCID: PMC3531191 DOI: 10.1093/nar/gks1163] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]  Open
36
Krzyzanowski MK, Kozlowska E, Kozlowski P. Identification and functional analysis of the erh1(+) gene encoding enhancer of rudimentary homolog from the fission yeast Schizosaccharomyces pombe. PLoS One 2012;7:e49059. [PMID: 23145069 PMCID: PMC3492181 DOI: 10.1371/journal.pone.0049059] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2011] [Accepted: 10/07/2012] [Indexed: 11/19/2022]  Open
37
Solís-Muñoz P, López JC, Bernal W, Willars C, Verma A, Heneghan MA, Wendon J, Auzinger G. Voriconazole hepatotoxicity in severe liver dysfunction. J Infect 2012;66:80-6. [PMID: 23041040 DOI: 10.1016/j.jinf.2012.09.011] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2012] [Revised: 09/12/2012] [Accepted: 09/26/2012] [Indexed: 12/28/2022]
38
Skamnioti P, Furlong RF, Gurr SJ. The fate of gene duplicates in the genomes of fungal pathogens. Commun Integr Biol 2012;1:196-8. [PMID: 19513258 DOI: 10.4161/cib.1.2.7144] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2008] [Accepted: 10/07/2008] [Indexed: 11/19/2022]  Open
39
Defects in mitochondrial and peroxisomal β-oxidation influence virulence in the maize pathogen Ustilago maydis. EUKARYOTIC CELL 2012;11:1055-66. [PMID: 22707484 DOI: 10.1128/ec.00129-12] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
40
Peroxisomal and mitochondrial β-oxidation pathways influence the virulence of the pathogenic fungus Cryptococcus neoformans. EUKARYOTIC CELL 2012;11:1042-54. [PMID: 22707485 DOI: 10.1128/ec.00128-12] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
41
Selection of a DNA barcode for Nectriaceae from fungal whole-genomes. SCIENCE CHINA-LIFE SCIENCES 2012;55:80-8. [PMID: 22314494 DOI: 10.1007/s11427-012-4266-2] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/21/2011] [Accepted: 11/17/2011] [Indexed: 10/14/2022]
42
Balazs A, Batta G, Miklos I, Acs-Szabo L, Vazquez de Aldana CR, Sipiczki M. Conserved regulators of the cell separation process in Schizosaccharomyces. Fungal Genet Biol 2012;49:235-49. [PMID: 22300943 DOI: 10.1016/j.fgb.2012.01.003] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2011] [Revised: 01/13/2012] [Accepted: 01/16/2012] [Indexed: 02/07/2023]
43
Kelkar YD, Ochman H. Causes and consequences of genome expansion in fungi. Genome Biol Evol 2011;4:13-23. [PMID: 22117086 PMCID: PMC3267396 DOI: 10.1093/gbe/evr124] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/18/2011] [Indexed: 11/12/2022]  Open
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Ebersberger I, de Matos Simoes R, Kupczok A, Gube M, Kothe E, Voigt K, von Haeseler A. A consistent phylogenetic backbone for the fungi. Mol Biol Evol 2011;29:1319-34. [PMID: 22114356 PMCID: PMC3339314 DOI: 10.1093/molbev/msr285] [Citation(s) in RCA: 105] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]  Open
45
Berberine and itraconazole are not synergistic in vitro against Aspergillus fumigatus isolated from clinical patients. Molecules 2011;16:9218-33. [PMID: 22051933 PMCID: PMC6264531 DOI: 10.3390/molecules16119218] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2011] [Revised: 10/29/2011] [Accepted: 10/31/2011] [Indexed: 12/03/2022]  Open
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Koire AM, Cavalcanti ARO. Fusion of the subunits α and β of succinyl-CoA synthetase as a phylogenetic marker for Pezizomycotina fungi. Genet Mol Biol 2011;34:669-75. [PMID: 22215972 PMCID: PMC3229123 DOI: 10.1590/s1415-47572011005000040] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2011] [Accepted: 06/23/2011] [Indexed: 11/29/2022]  Open
47
Addressing inter-gene heterogeneity in maximum likelihood phylogenomic analysis: yeasts revisited. PLoS One 2011;6:e22783. [PMID: 21850235 PMCID: PMC3151265 DOI: 10.1371/journal.pone.0022783] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2011] [Accepted: 07/05/2011] [Indexed: 11/19/2022]  Open
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Cortese MS, Etxebeste O, Garzia A, Espeso EA, Ugalde U. Elucidation of functional markers from Aspergillus nidulans developmental regulator FlbB and their phylogenetic distribution. PLoS One 2011;6:e17505. [PMID: 21423749 PMCID: PMC3053368 DOI: 10.1371/journal.pone.0017505] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2010] [Accepted: 02/06/2011] [Indexed: 11/18/2022]  Open
49
de Clare M, Pir P, Oliver SG. Haploinsufficiency and the sex chromosomes from yeasts to humans. BMC Biol 2011;9:15. [PMID: 21356089 PMCID: PMC3058074 DOI: 10.1186/1741-7007-9-15] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2010] [Accepted: 02/28/2011] [Indexed: 11/10/2022]  Open
50
Hayashi M, Schilke B, Marszalek J, Williams B, Craig EA. Ancient gene duplication provided a key molecular step for anaerobic growth of Baker's yeast. Mol Biol Evol 2011;28:2005-17. [PMID: 21245414 DOI: 10.1093/molbev/msr019] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]  Open
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