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Huwanixi A, Peng Z, Li S, Zhou Y, Zhao S, Wan C. Comparative proteomic analysis of seed germination between allotetraploid cotton Gossypium hirsutum and Gossypium barbadense. J Proteomics 2024; 297:105130. [PMID: 38401592 DOI: 10.1016/j.jprot.2024.105130] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2023] [Revised: 01/23/2024] [Accepted: 02/18/2024] [Indexed: 02/26/2024]
Abstract
Seed germination, a key initial event in the plant life cycle, directly affects cotton yield and quality. Gossypium barbadense and Gossypium hirsutum gradually evolved through polyploidization, resulting in different characteristics, and this interspecific variation lacks genetic and molecular explanation. This work aimed to compare the proteomes between G. barbadense and G. hirsutum during seed germination. Here, we identified 2740 proteins for G. barbadense and 3758 for G. hirsutum. In the initial state, proteins in two cotton involved similar bioprocess, such as sugar metabolism, DNA repairing, and ABA signaling pathway. However, in the post-germination stage, G. hirsutum expressed more protein related to redox homeostasis, peroxidase activity, and pathogen interactions. Analyzing the different expression patterns of 915 single-copy orthogroups between the two kinds of cotton indicated that most of the differentially expressed proteins in G. barbadense were related to carbon metabolism. In contrast, most proteins in G. hirsutum were associated with stress response. Besides that, by proteogenomic analysis, we found 349 putative non-canonical peptides, which may be involved in plant development. These results will help to understand the different characteristics of these two kinds of cotton, such as fiber quality, yield, and adaptability. SIGNIFICANCE STATEMENT: Cotton is the predominant natural fiber crop worldwide; Gossypium barbadense and Gossypium hirsutum have evolved through polyploidization to produce differing traits. However, given their specific features, the divergence of mechanisms underlying seed germination between G. hirsutum and G. barbadense has not been discussed. Here, we explore what protein contributes to interspecific differences between G. barbadense and G. hirsutum during the seed germination period. This study helps to elucidate the evolution and domestication history of cotton polyploids and may allow breeders to understand their domestication history better and improve fiber quality and adaptability.
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Affiliation(s)
- Aishuake Huwanixi
- School of Life Sciences and Hubei Key Laboratory of Genetic Regulation and Integrative Biology, Central China Normal University, Wuhan, Hubei 430079, People's Republic of China
| | - Zhao Peng
- School of Life Sciences and Hubei Key Laboratory of Genetic Regulation and Integrative Biology, Central China Normal University, Wuhan, Hubei 430079, People's Republic of China
| | - Shenglan Li
- School of Life Sciences and Hubei Key Laboratory of Genetic Regulation and Integrative Biology, Central China Normal University, Wuhan, Hubei 430079, People's Republic of China
| | - Yutian Zhou
- School of Life Sciences and Hubei Key Laboratory of Genetic Regulation and Integrative Biology, Central China Normal University, Wuhan, Hubei 430079, People's Republic of China
| | - Sixian Zhao
- School of Life Sciences and Hubei Key Laboratory of Genetic Regulation and Integrative Biology, Central China Normal University, Wuhan, Hubei 430079, People's Republic of China
| | - Cuihong Wan
- School of Life Sciences and Hubei Key Laboratory of Genetic Regulation and Integrative Biology, Central China Normal University, Wuhan, Hubei 430079, People's Republic of China.
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Ren Y, Shen F, Liu J, Liang W, Zhang C, Lian T, Jiang L. Application of Methionine Increases the Germination Rate of Maize Seeds by Triggering Multiple Phenylpropanoid Biosynthetic Genes at Transcript Levels. PLANTS (BASEL, SWITZERLAND) 2023; 12:3802. [PMID: 38005700 PMCID: PMC10675280 DOI: 10.3390/plants12223802] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/01/2023] [Revised: 11/01/2023] [Accepted: 11/06/2023] [Indexed: 11/26/2023]
Abstract
Methionine is an essential amino acid that initiates protein synthesis and serves as a substrate for various chemical reactions. Methionine metabolism plays an important role in Arabidopsis seed germination, but how methionine works in seed germination of maize has not been elucidated. We compared the changes in germination rate, the contents of methionine and folates, and transcriptional levels using transcriptome analysis under water or exogenous methionine treatment. The results indicate that the application of methionine increases seed germination rate (95% versus 70%), leading to significant differences in the content of methionine at 36 h, which brought the rapid increase forward by 12 h in the embryo and endosperm. Transcriptome analysis shows that methionine mainly affects the proliferation and differentiation of cells in the embryo, and the degradation of storage substances and signal transduction in the endosperm. In particular, multiple phenylpropanoid biosynthetic genes were triggered upon methionine treatment during germination. These results provide a theoretical foundation for promoting maize seed germination and serve as a valuable theoretical resource for seed priming strategies.
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Affiliation(s)
- Ying Ren
- Biotechnology Research Institute, Chinese Academy of Agricultural Science, Beijing 100081, China; (Y.R.); (F.S.); (J.L.); (W.L.); (C.Z.)
| | - Fengyuan Shen
- Biotechnology Research Institute, Chinese Academy of Agricultural Science, Beijing 100081, China; (Y.R.); (F.S.); (J.L.); (W.L.); (C.Z.)
| | - Ji’an Liu
- Biotechnology Research Institute, Chinese Academy of Agricultural Science, Beijing 100081, China; (Y.R.); (F.S.); (J.L.); (W.L.); (C.Z.)
| | - Wenguang Liang
- Biotechnology Research Institute, Chinese Academy of Agricultural Science, Beijing 100081, China; (Y.R.); (F.S.); (J.L.); (W.L.); (C.Z.)
| | - Chunyi Zhang
- Biotechnology Research Institute, Chinese Academy of Agricultural Science, Beijing 100081, China; (Y.R.); (F.S.); (J.L.); (W.L.); (C.Z.)
- Sanya Institute, Hainan Academy of Agricultural Sciences, Sanya 572000, China
| | - Tong Lian
- Biotechnology Research Institute, Chinese Academy of Agricultural Science, Beijing 100081, China; (Y.R.); (F.S.); (J.L.); (W.L.); (C.Z.)
- Sanya Institute, Hainan Academy of Agricultural Sciences, Sanya 572000, China
- Hainan Yazhou Bay Seed Laboratory, Sanya 572000, China
| | - Ling Jiang
- Biotechnology Research Institute, Chinese Academy of Agricultural Science, Beijing 100081, China; (Y.R.); (F.S.); (J.L.); (W.L.); (C.Z.)
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Chaudhari HA, Mahatma MK, Antala V, Radadiya N, Ukani P, Tomar RS, Thawait LK, Singh S, Gangadhara K, Sakure A, Parihar A. Ethrel-induced release of fresh seed dormancy causes remodelling of amylase activity, proteomics, phytohormone and fatty acid profile of groundnut (Arachis hypogaea L.). PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS : AN INTERNATIONAL JOURNAL OF FUNCTIONAL PLANT BIOLOGY 2023; 29:829-842. [PMID: 37520814 PMCID: PMC10382464 DOI: 10.1007/s12298-023-01332-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/18/2023] [Revised: 06/20/2023] [Accepted: 07/05/2023] [Indexed: 08/01/2023]
Abstract
It is important to have a short period of fresh seed dormancy in some of the groundnut species to counter pre-harvest sprouting (PHS). One of the main causes of PHS is the activation of ethylene-mediated pathways. To determine the effect of ethylene, the study was conducted and alterations in amylase, proteins and fatty acids were observed at the 0, 6, 12, and 24 h stages after ethrel administration. The result showed an increase in amylase activity, and the fatty acids profile showed a unique alteration pattern at different germination stages. Two-dimensional gel electrophoresis (2DGE) revealed differential expression of proteins at each stage. The trypsin digestion following spectral development through UPLC-MS/MS enabled identification of number of differentially expressed proteins. A total of 49 proteins were identified from 2DGE excised spots. The majority were belonged to seed storage-related proteins like Arah1, Arah2, AAI- domain containing protein, conglutin, Arah3/4, arachin, glycinin. Expression of lipoxygenase1, lipoxygenase9 and Arah2 genes were further confirmed by qRT-PCR which showed its involvement at transcript level. Up-regulation of lipoxygenase9 is correlated with decreased content of fatty acids during germination. Phytohormone detection revealed decrease in ABA, SA and JA content which are generally inhibitor of seed germination while GA, IAA and kinetin concentration increased revealing positive regulation of seed germination. We present an integrated view of proteomics, phytohormone profile, carbohydrate and lipid metabolism to unravel mechanism of fresh seed dormancy. Supplementary Information The online version contains supplementary material available at 10.1007/s12298-023-01332-6.
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Affiliation(s)
- Hemangini A. Chaudhari
- Department of Biotechnology, College of Agriculture, Junagadh Agricultural University, Junagadh, Gujarat 362001 India
- ICAR-Directorate of Groundnut Research, Junagadh, Gujarat 362001 India
| | - Mahesh Kumar Mahatma
- ICAR-Directorate of Groundnut Research, Junagadh, Gujarat 362001 India
- ICAR-National Research Centre on Seed Spices, Tabiji, Ajmer, 305206 India
| | - Virali Antala
- Department of Biotechnology, College of Agriculture, Junagadh Agricultural University, Junagadh, Gujarat 362001 India
| | - Nidhi Radadiya
- Department of Biotechnology, College of Agriculture, Junagadh Agricultural University, Junagadh, Gujarat 362001 India
| | - Piyush Ukani
- Department of Biotechnology, College of Agriculture, Junagadh Agricultural University, Junagadh, Gujarat 362001 India
| | - Rukam Singh Tomar
- Department of Biotechnology, College of Agriculture, Junagadh Agricultural University, Junagadh, Gujarat 362001 India
| | | | - Sushmita Singh
- ICAR-Directorate of Groundnut Research, Junagadh, Gujarat 362001 India
| | - K. Gangadhara
- ICAR-Directorate of Groundnut Research, Junagadh, Gujarat 362001 India
- ICAR-Central Tobacco Research Institute, Regional Station, Kandukur, Andhra Pradesh 533105 India
| | - Amar Sakure
- Department of Agricultural Biotechnology, Anand Agricultural University, Anand, Gujarat 38811 India
| | - Akrash Parihar
- Department of Agricultural Biotechnology, Anand Agricultural University, Anand, Gujarat 38811 India
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Kato-Noguchi H. Defensive Molecules Momilactones A and B: Function, Biosynthesis, Induction and Occurrence. Toxins (Basel) 2023; 15:toxins15040241. [PMID: 37104180 PMCID: PMC10140866 DOI: 10.3390/toxins15040241] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2023] [Revised: 03/22/2023] [Accepted: 03/24/2023] [Indexed: 03/29/2023] Open
Abstract
Labdane-related diterpenoids, momilactones A and B were isolated and identified in rice husks in 1973 and later found in rice leaves, straws, roots, root exudate, other several Poaceae species and the moss species Calohypnum plumiforme. The functions of momilactones in rice are well documented. Momilactones in rice plants suppressed the growth of fungal pathogens, indicating the defense function against pathogen attacks. Rice plants also inhibited the growth of adjacent competitive plants through the root secretion of momilactones into their rhizosphere due to the potent growth-inhibitory activity of momilactones, indicating a function in allelopathy. Momilactone-deficient mutants of rice lost their tolerance to pathogens and allelopathic activity, which verifies the involvement of momilactones in both functions. Momilactones also showed pharmacological functions such as anti-leukemia and anti-diabetic activities. Momilactones are synthesized from geranylgeranyl diphosphate through cyclization steps, and the biosynthetic gene cluster is located on chromosome 4 of the rice genome. Pathogen attacks, biotic elicitors such as chitosan and cantharidin, and abiotic elicitors such as UV irradiation and CuCl2 elevated momilactone production through jasmonic acid-dependent and independent signaling pathways. Rice allelopathy was also elevated by jasmonic acid, UV irradiation and nutrient deficiency due to nutrient competition with neighboring plants with the increased production and secretion of momilactones. Rice allelopathic activity and the secretion of momilactones into the rice rhizosphere were also induced by either nearby Echinochloa crus-galli plants or their root exudates. Certain compounds from Echinochloa crus-galli may stimulate the production and secretion of momilactones. This article focuses on the functions, biosynthesis and induction of momilactones and their occurrence in plant species.
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Transcriptomic insights into the effects of abscisic acid on the germination of Magnolia sieboldii K. Koch seed. Gene 2023; 853:147066. [PMID: 36455787 DOI: 10.1016/j.gene.2022.147066] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2022] [Revised: 11/07/2022] [Accepted: 11/18/2022] [Indexed: 11/30/2022]
Abstract
Magnolia sieboldii K. Koch is a deciduous tree species. However, the wild resource of M. sieboldii has been declining due to excessive utilization and seed dormancy. In our previous research, M. sieboldii seeds have morphophysiological dormancy and low germination rates under natural conditions. The aim of the present study was to identify the genes involved in dormancy maintenance. In this study, the germination percentage of M. sieboldii seeds negatively correlated with the content of endogenous abscisic acid (ABA). The hydration of seeds for germination showed three distinct phases. Five key time points were identified: 0 h imbibition (dry seed, GZ), 0 day after imbibition (DAI), 16 DAI, 40 DAI, and 56 DAI. The comprehensive transcript profiles of M. sieboldii seeds treated with ABA and water at the five key germinating stages were obtained. A total of 9641 differentially expressed genes (DEGs) were identified, and 208 and 197 common DEGs were found throughout the ABA and water treatments, respectively. Compared with that in the GZ, 518, 696, 2133, and 1535 DEGs were identified in the SH group at 0, 16, 40 and 56 DAI, respectively. 666, 1725, 1560 and 1415 DEGs were identified in the ABA group at 0, 16, 40, and 56 DAI, respectively. Among the identified DEGs, 12 722 were annotated with GO terms, the top three enriched GO terms were different among the DEGs at 56 DAI in the ABA vs. SH treatments. KEGG pathway enrichment analysis for DEGs indicated that oxidative phosphorylation, protein processing in endoplasmic reticulum, starch and sucrose metabolism play an important role in seed response to ABA. 1926 TFs are obtained and classified into 72 families from the M. sieboldii transcriptome. Results of differential gene expression analysis together with qRT-PCR indicated that phase II is crucial for rapid and successful seed germination. This study is the first to present the global expression patterns of ABA-regulated transcripts in M. sieboldii seeds at different germinating phases.
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Farooq M, Khan MA, Zhao DD, Asif S, Kim EG, Jang YH, Park JR, Lee IJ, Kim KM. Extrinsic role of gibberellin mitigating salinity effect in different rice genotypes. FRONTIERS IN PLANT SCIENCE 2022; 13:1041181. [PMID: 36388489 PMCID: PMC9641126 DOI: 10.3389/fpls.2022.1041181] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/10/2022] [Accepted: 10/10/2022] [Indexed: 06/16/2023]
Abstract
The overall effects of gibberellic acid (GA3) with NaCl on different rice genotypes are inadequately understood. The present study determines the effect of different GA3 (50 and 100 µM) concentrations on the morphophysiological, molecular and biochemical effects of 120 mM NaCl salt stress in rice seedlings. Salt stress reduced germination percentages and seedling growth and decreased bioactive GA content. It also downregulated the relative expression of α-amylase-related genes - OsAmy1A, OsAmy1C, and OsAmy3C in the salt-sensitive IR28 cultivar. Salt stress differentially regulated the expression of GA biosynthetic genes. Salt stress increased antioxidant activity in all rice genotypes tested, except in IR28. GA3 mitigates the effect of salt stress, rescuing seed germination and growth attributes. GA3 significantly increased bioactive GA content in Nagdong and pokkali (50 µM) and Cheongcheong and IR28 (100 µM) cultivars. The α-amylase genes were also significantly upregulated by GA3. Similarly, GA3 upregulated OsGA2ox1 and OsGA2ox9 expression in the Cheongcheong and salt-sensitive IR28 cultivars. The present study demonstrated that salt stress inactivates bioactive GA - inhibiting germination and seedlings growth - and decreases bioactive GA content and GSH activity in IR28 and Pokkali cultivars. Further, GA3 significantly reversed the effects of 120 mM NaCl salt stress in different rice genotypes. The current study suggested that the known coastal area salinity concentration can be significantly recovered with the application of exogenous GA3. Thus, it could be possible to grow eco-friendly rice close to the coastal zone in order to reduce the damage caused by salinity.
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Affiliation(s)
- Muhammad Farooq
- Department of Applied Biosciences, Graduate School, Kyungpook National University, Deagu, South Korea
| | - Muhammad Aaqil Khan
- Department of Applied Biosciences, Graduate School, Kyungpook National University, Deagu, South Korea
| | - Dan-Dan Zhao
- Department of Applied Biosciences, Graduate School, Kyungpook National University, Deagu, South Korea
- Crop Foundation Research Division, National Institute of Crop Science, Rural Development Administration, Wanju, South Korea
| | - Saleem Asif
- Department of Applied Biosciences, Graduate School, Kyungpook National University, Deagu, South Korea
| | - Eun-Gyeong Kim
- Department of Applied Biosciences, Graduate School, Kyungpook National University, Deagu, South Korea
| | - Yoon-Hee Jang
- Department of Applied Biosciences, Graduate School, Kyungpook National University, Deagu, South Korea
| | - Jae-Ryoung Park
- Crop Foundation Research Division, National Institute of Crop Science, Rural Development Administration, Wanju, South Korea
| | - In-Jung Lee
- Department of Applied Biosciences, Graduate School, Kyungpook National University, Deagu, South Korea
| | - Kyung-Min Kim
- Department of Applied Biosciences, Graduate School, Kyungpook National University, Deagu, South Korea
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Okello D, Komakech R, Gang R, Rahmat E, Chung Y, Omujal F, Kang Y. Influence of various temperatures, seed priming treatments and durations on germination and growth of the medicinal plant Aspilia africana. Sci Rep 2022; 12:14180. [PMID: 35986064 PMCID: PMC9391371 DOI: 10.1038/s41598-022-18236-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2021] [Accepted: 08/08/2022] [Indexed: 11/25/2022] Open
Abstract
For millennia, Aspilia africana has been used across Africa to treat various diseases including malaria, wounds, and diabetes. In this study, temperature influenced the in vitro germination of A. africana with highest final germination percentage (FGP) and germination index (GI) of 65.0 ± 7.64% and 2.26 ± 0.223, respectively, at 19.8 °C. Priming seeds with H2O, KNO3, and GA3 (gibberellic acid 3) improved both in vitro germination and ex vitro emergence of A. africana seeds. Seed priming with [Formula: see text] M GA3 produced overall highest in vitro FGP (from 90.0 ± 4.08% to 100 ± 0.00%) and GI (from 2.97 ± 0.385 to 3.80 ± 0.239) across all priming durations. Seeds primed with KNO3 had better germination parameters for 6 and 12 h compared to 18 and 24 h. Furthermore, the highest in vitro FGP (100 ± 0.00%) was observed in seeds primed for 12 h with [Formula: see text] M GA3. Ex vitro A. africana seed emergence was significantly enhanced by GA3 priming. Priming A. africana seeds with H2O, KNO3, and GA3 improved their growth after 3 months, with the overall best growth for seeds primed with [Formula: see text] M GA3. Seed priming of A. africana is a feasible approach for improving germination and seed emergence, and enhancing plant growth.
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Affiliation(s)
- Denis Okello
- grid.418980.c0000 0000 8749 5149Herbal Medicine Resources Research Center, Korea Institute of Oriental Medicine (KIOM), 111 Geonjae-ro, Naju-si, Jeollanam-do 58245 Republic of Korea ,grid.412786.e0000 0004 1791 8264Korean Convergence Medicine Major, University of Science and Technology (UST), Daejeon, Republic of Korea
| | - Richard Komakech
- grid.415705.2Natural Chemotherapeutics Research Institute (NCRI), Ministry of Health, P.O. Box 4864, Kampala, Uganda
| | - Roggers Gang
- grid.418980.c0000 0000 8749 5149Herbal Medicine Resources Research Center, Korea Institute of Oriental Medicine (KIOM), 111 Geonjae-ro, Naju-si, Jeollanam-do 58245 Republic of Korea ,grid.412786.e0000 0004 1791 8264Korean Convergence Medicine Major, University of Science and Technology (UST), Daejeon, Republic of Korea ,National Semi-Arid Resources Research Institute (NaSARRI), P.O. Box 56, Soroti, Uganda
| | - Endang Rahmat
- grid.418980.c0000 0000 8749 5149Herbal Medicine Resources Research Center, Korea Institute of Oriental Medicine (KIOM), 111 Geonjae-ro, Naju-si, Jeollanam-do 58245 Republic of Korea ,grid.412786.e0000 0004 1791 8264Korean Convergence Medicine Major, University of Science and Technology (UST), Daejeon, Republic of Korea
| | - Yuseong Chung
- grid.418980.c0000 0000 8749 5149Herbal Medicine Resources Research Center, Korea Institute of Oriental Medicine (KIOM), 111 Geonjae-ro, Naju-si, Jeollanam-do 58245 Republic of Korea
| | - Francis Omujal
- grid.415705.2Natural Chemotherapeutics Research Institute (NCRI), Ministry of Health, P.O. Box 4864, Kampala, Uganda
| | - Youngmin Kang
- Herbal Medicine Resources Research Center, Korea Institute of Oriental Medicine (KIOM), 111 Geonjae-ro, Naju-si, Jeollanam-do, 58245, Republic of Korea. .,Korean Convergence Medicine Major, University of Science and Technology (UST), Daejeon, Republic of Korea.
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Evaluation of Toxicity of Crude Phlorotannins and Phloroglucinol Using Different Model Organisms. Toxins (Basel) 2022; 14:toxins14050312. [PMID: 35622559 PMCID: PMC9148043 DOI: 10.3390/toxins14050312] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2022] [Revised: 04/24/2022] [Accepted: 04/26/2022] [Indexed: 02/04/2023] Open
Abstract
Phlorotannins have been proven to contain numerous bioactive compounds that have potential to be applied in variety industries, including cosmetics, functional foods, nutraceuticals, environmental management, and medicine. The larvicidal and growth-inhibiting properties of phlorotannins have been extensively studied in various organisms. However, the toxicity of the phloroglucinol oligomer of phlorotannin is unclear, especially in Artemia salina, Daphnia magna, Lactuca sativa, and Chlorella vulgaris, which are commonly used in many bioassays. Therefore, research using these four organisms should be designed to provide basic information about the toxic effects of phlorotannins and phloroglucinol. This study aimed to evaluate the larvicidal and inhibitory properties of phlorotannins and phloroglucinol on A. salina, D. magna, L. sativa, and C. vulgaris. Phlorotannin extract and phloroglucinol were administered at various concentrations to each test organism. The survival rate of A. salina nauplii and D. magna neonates was observed every 24 h to 72 h, whereas the L. sativa seed germination and inhibition rate of C. vulgaris were observed up to 96 h. The results showed that the 24 h LC50 of phlorotannin on A. salina and D. magna were 10.67 and 1.32 mg/mL, respectively. The germination inhibition of L. sativa was 53.3% with a seed growth of less than 4 mm after 96 h upon exposure to 1 mg/mL of phlorotannin. Freshwater and seawater C. vulgaris experienced yield inhibition of 39.47 and 43.46%, respectively, when 2 mg/mL of phlorotanin was added. These results indicate that phlorotannin affects the survival and growth of the test organisms, so its use as a pesticide, herbicide, and algaecide agent for environmental and aquaculture applications can be further studied.
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Yaghoubian I, Msimbira LA, Smith DL. Cell-Free Supernatant of Bacillus Strains can Improve Seed Vigor Index of Corn (Zea mays L.) Under Salinity Stress. FRONTIERS IN SUSTAINABLE FOOD SYSTEMS 2022. [DOI: 10.3389/fsufs.2022.857643] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
Abstract
Currently, salinity is the second biggest challenge in the world after drought and affects all stages of plant growth. The use of environmentally friendly methods such as microorganisms and their derivatives can reduce the destructive effects of salinity stress. A growth chamber experiment was conducted to determine the effects of cell-free supernatant (CFS) from Bacillus strains on germination of corn under salinity stress. Corn seeds were subjected to three salinity levels (0, 100 and 150 mM of NaCl), cell-free supernatant of Bacillus strains (U35, U47, U48, U49, and U50) at two levels of dilution (1:50 and 1:250). Germination percentage and rate decreased with increasing salinity toward 150 mM NaCl all together leading to suppressed growth variables for corn seed seedlings including fresh and dry weight of radicle (47.71 and 52.63%, respectively), and shoot (49.52 and 49.25%, respectively), radicle and shoot lengths (39.90 and 66.07%, respectively). Seed vigor index also decreased by 63.04% at 150 mM NaCl. Contrary to salinity, the CFSs of Bacillus strains increased all the growth traits of corn seeds and reduced the negative effects of salinity, especially severe salinity. Ratios of 1:50 and 1: 250 gave best performance for CFSs from U35 and U50, respectively. In general, the highest seed vigor index was obtained by application of 1: 250 CFS from U50. Most germination traits and seed vigor index correlated significantly positive; however, mean germination time was negatively and significantly correlated with the seed vigor index of corn. The results showed that cell-free supernatant use, may as well-helped in changing the ratios of phytohormones, ROS, the activity of antioxidant enzymes and osmotic proteins, hence reduce the negative effects of salinity and improve seed vigor index which eventually increases the ability of plant seedling establishment under saline conditions.
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Yu F, Zhao C, Su L, Zhang S, Sun X, Li K, Yue Q, Zhao L. Treatment and high value utilization of glutamic acid wastewater. Prep Biochem Biotechnol 2022; 52:1119-1133. [PMID: 35133937 DOI: 10.1080/10826068.2022.2033990] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Abstract
Glutamate wastewater has a high yield in the world and is difficult to be treated due to its high acidity, high COD (chemical oxygen demand, reflecting the pollution degree of reduced substances in the water) and high ammonia nitrogen characteristics. In this study, Bacillus licheniformis M 2020051 was used to treat organic wastewater to ferment polyglutamic acid, which reduced the pollution of industrial wastewater and produced polyglutamic acid at a low cost. Firstly, a strain with high salt tolerance and high polyglutamic acid production was isolated from saline soil, and the mechanism of salt tolerance and polyglutamic acid production were also analyzed. Then Single-factor experiment and Response surface methodology (RSM) were used to determine the appropriate fermentation conditions to achieve maximum γ-polyglutamic acid production. After optimization, the yield of polyglutamic acid was increased to 6.91 g·L-1 by shaking fermentation, an increase of 7.13%. Finally, the agronomic experiments were carried out, and the results showed that γ-polyglutamic acid could significantly increase the germination rate of corn seeds and the growth of rapeseed. These studies will lay the foundation for reducing industrial wastewater pollution and exploring the production model of γ-polyglutamic acid.
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Affiliation(s)
- Fupeng Yu
- State Key Laboratory of Biobased Material and Green Papermaking, School of Bioengineering, Qilu University of Technology, Shandong Academy of Sciences, Jinan, China
| | - Chen Zhao
- Shandong Provincial Key Laboratory of Food and Fermentation Engineering, Shandong Food Ferment Industry Research & Design Institute, Qilu University of Technology, Shandong Academy of Sciences, Jinan, China
| | - Le Su
- State Key Laboratory of Biobased Material and Green Papermaking, School of Bioengineering, Qilu University of Technology, Shandong Academy of Sciences, Jinan, China
| | - Song Zhang
- State Key Laboratory of Biobased Material and Green Papermaking, School of Bioengineering, Qilu University of Technology, Shandong Academy of Sciences, Jinan, China
| | - Xin Sun
- State Key Laboratory of Biobased Material and Green Papermaking, School of Bioengineering, Qilu University of Technology, Shandong Academy of Sciences, Jinan, China
| | - Kunlun Li
- Jinan Hangchen Biotechnology Co., Ltd, Jinan, P.R. China
| | - Qiulin Yue
- State Key Laboratory of Biobased Material and Green Papermaking, School of Bioengineering, Qilu University of Technology, Shandong Academy of Sciences, Jinan, China
| | - Lin Zhao
- State Key Laboratory of Biobased Material and Green Papermaking, School of Bioengineering, Qilu University of Technology, Shandong Academy of Sciences, Jinan, China.,Shandong Chenzhang Biotechnology Co., Ltd, Jinan, P.R. China
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Zhang Y, Xu S, Yue S, Zhang X, Qiao Y, Liu M, Zhou Y. Reciprocal Field Transplant Experiment and Comparative Transcriptome Analysis Provide Insights Into Differences in Seed Germination Time of Two Populations From Different Geographic Regions of Zostera marina L. FRONTIERS IN PLANT SCIENCE 2022; 12:793060. [PMID: 35116049 PMCID: PMC8804501 DOI: 10.3389/fpls.2021.793060] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/11/2021] [Accepted: 12/03/2021] [Indexed: 06/14/2023]
Abstract
Seagrasses are the only submerged marine higher plants, which can colonize the sea through sexual (via seeds) reproduction. The transition between seed dormancy and germination is an important ecological trait and a key stage in the life cycle of higher plants. According to our observations, the seeds of Zostera marina L. (eelgrass) in Swan Lake (SL) and Qingdao Bay (QB) in northern China have the same maturation time (summer) but different germination time. To investigate this phenomenon, we further carried out reciprocal transplantation experiment and transcriptome analysis. Results revealed that differences in the seed germination time between the two sites do exist and are determined by internal molecular mechanisms as opposed to environmental factors. Furthermore, we conducted comparative transcriptome analysis of seeds at the mature and early germination stages in both locations. The results that the number of genes related to energy, hormone and cell changes was higher in SL than in QB, could account for that the dormancy depth of seeds in SL was deeper than that in QB; consequently, the seeds in SL needed to mobilize more related genes to break dormancy and start germination. The results could have important practical implications for seagrass meadow restoration via seeds and provide in-depth and comprehensive data for understanding the molecular mechanisms related to seagrass seed germination.
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Affiliation(s)
- Yu Zhang
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, China
- CAS Engineering Laboratory for Marine Ranching, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- University of Chinese Academy of Sciences, Beijing, China
- Shandong Province Key Laboratory of Experimental Marine Biology, Qingdao, China
| | - Shaochun Xu
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, China
- CAS Engineering Laboratory for Marine Ranching, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- Shandong Province Key Laboratory of Experimental Marine Biology, Qingdao, China
| | - Shidong Yue
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, China
- CAS Engineering Laboratory for Marine Ranching, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- University of Chinese Academy of Sciences, Beijing, China
- Shandong Province Key Laboratory of Experimental Marine Biology, Qingdao, China
| | - Xiaomei Zhang
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, China
- CAS Engineering Laboratory for Marine Ranching, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- Shandong Province Key Laboratory of Experimental Marine Biology, Qingdao, China
| | - Yongliang Qiao
- Qingdao University of Science and Technology, Qingdao, China
| | - Mingjie Liu
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, China
- CAS Engineering Laboratory for Marine Ranching, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- University of Chinese Academy of Sciences, Beijing, China
- Shandong Province Key Laboratory of Experimental Marine Biology, Qingdao, China
| | - Yi Zhou
- CAS Key Laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China
- Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, China
- CAS Engineering Laboratory for Marine Ranching, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
- University of Chinese Academy of Sciences, Beijing, China
- Shandong Province Key Laboratory of Experimental Marine Biology, Qingdao, China
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12
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Ge N, Yang K, Yang L, Meng ZG, Li LG, Chen JW. iTRAQ and RNA-seq analyses provide an insight into mechanisms of recalcitrance in a medicinal plant Panax notoginseng seeds during the after-ripening process. FUNCTIONAL PLANT BIOLOGY : FPB 2021; 49:68-88. [PMID: 34822750 DOI: 10.1071/fp21197] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2020] [Accepted: 10/20/2021] [Indexed: 06/13/2023]
Abstract
Panax notoginseng (Burk) F.H. Chen is an important economic and medicinal plant from the family of Araliaceae, and its seed is characterised by the recalcitrance and after-ripening process. However, the molecular mechanism on the dehydration sensitivity is not clear in recalcitrant seeds. In the present study, isobaric tag for relative and absolute quantification (iTRAQ) and RNA-seq were used to analyse the proteomic and transcriptomic changes in seeds of P. notoginseng in days after-ripening (DAR). A total of 454 differentially expressed proteins (DEPs) and 12000 differentially expressed genes (DEGs) were obtained. The activity of enzymes related to antioxidant system were significantly increased, and the late embryogenesis abundant (LEA) protein family and most members of glutathione metabolism enzymes have been downregulated during the after-ripening process. The lack or inadequate accumulation of LEA proteins in the embryo and the low activity of antioxidant defense in glutathione metabolism might be the key factors leading to the dehydration sensitivity in recalcitrant seeds of P. notoginseng. In addition, the increased activity of elycolysis (EMP), citric acid cycle (TCA) and pentose phosphate pathway (PPP) pathways might be one of important signals to complete the after-ripening process. Overall, our study might provide a new insight into the molecular mechanism on dehydration sensitivity of recalcitrant seeds.
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Affiliation(s)
- Na Ge
- College of Agronomy and Biotechnology, Yunnan Agricultural University, Fengyuan Road, Panlong District, Kunming, Yunnan 650201, China; and The Key Laboratory of Medicinal Plant Biology of Yunnan Province, Yunnan Agricultural University, Fengyuan Road, Panlong District, Kunming, Yunnan 650201, China; and National and Local Joint Engineering Research Center on Germplasm Innovation and Utilization of Chinese Medicinal Materials in Southwestern China, Yunnan Agricultural University, Fengyuan Road, Panlong District, Kunming, Yunnan 650201, China
| | - Kai Yang
- College of Agronomy and Biotechnology, Yunnan Agricultural University, Fengyuan Road, Panlong District, Kunming, Yunnan 650201, China; and The Key Laboratory of Medicinal Plant Biology of Yunnan Province, Yunnan Agricultural University, Fengyuan Road, Panlong District, Kunming, Yunnan 650201, China; and National and Local Joint Engineering Research Center on Germplasm Innovation and Utilization of Chinese Medicinal Materials in Southwestern China, Yunnan Agricultural University, Fengyuan Road, Panlong District, Kunming, Yunnan 650201, China
| | - Ling Yang
- College of Agronomy and Biotechnology, Yunnan Agricultural University, Fengyuan Road, Panlong District, Kunming, Yunnan 650201, China; and The Key Laboratory of Medicinal Plant Biology of Yunnan Province, Yunnan Agricultural University, Fengyuan Road, Panlong District, Kunming, Yunnan 650201, China; and National and Local Joint Engineering Research Center on Germplasm Innovation and Utilization of Chinese Medicinal Materials in Southwestern China, Yunnan Agricultural University, Fengyuan Road, Panlong District, Kunming, Yunnan 650201, China
| | - Zhen-Gui Meng
- College of Agronomy and Biotechnology, Yunnan Agricultural University, Fengyuan Road, Panlong District, Kunming, Yunnan 650201, China; and The Key Laboratory of Medicinal Plant Biology of Yunnan Province, Yunnan Agricultural University, Fengyuan Road, Panlong District, Kunming, Yunnan 650201, China; and National and Local Joint Engineering Research Center on Germplasm Innovation and Utilization of Chinese Medicinal Materials in Southwestern China, Yunnan Agricultural University, Fengyuan Road, Panlong District, Kunming, Yunnan 650201, China
| | - Long-Geng Li
- College of Agronomy and Biotechnology, Yunnan Agricultural University, Fengyuan Road, Panlong District, Kunming, Yunnan 650201, China; and The Key Laboratory of Medicinal Plant Biology of Yunnan Province, Yunnan Agricultural University, Fengyuan Road, Panlong District, Kunming, Yunnan 650201, China; and National and Local Joint Engineering Research Center on Germplasm Innovation and Utilization of Chinese Medicinal Materials in Southwestern China, Yunnan Agricultural University, Fengyuan Road, Panlong District, Kunming, Yunnan 650201, China
| | - Jun-Wen Chen
- College of Agronomy and Biotechnology, Yunnan Agricultural University, Fengyuan Road, Panlong District, Kunming, Yunnan 650201, China; and The Key Laboratory of Medicinal Plant Biology of Yunnan Province, Yunnan Agricultural University, Fengyuan Road, Panlong District, Kunming, Yunnan 650201, China; and National and Local Joint Engineering Research Center on Germplasm Innovation and Utilization of Chinese Medicinal Materials in Southwestern China, Yunnan Agricultural University, Fengyuan Road, Panlong District, Kunming, Yunnan 650201, China
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13
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Huang Z, Ying J, Peng L, Sun S, Huang C, Li C, Wang Z, He Y. A genome-wide association study reveals that the cytochrome b5 involved in seed reserve mobilization during seed germination in rice. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2021; 134:4067-4076. [PMID: 34546380 DOI: 10.1007/s00122-021-03948-2] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/28/2021] [Accepted: 09/14/2021] [Indexed: 06/13/2023]
Abstract
A candidate gene cytochrome b5 for the major QTL qSRMP9 for rice seed reserve mobilization was validated during seed germination using a genome-wide association study approach. Seed reserve mobilization plays important roles in the early seedling growth in rice. However, the genetic basis underlying this process is poorly understood. In this study, the genetic architecture of variation in seed reserve mobilization during seed germination was studied using a genome-wide association study approach in rice. Three quantitative trait loci (QTL) including qSRMP6, qSRMP9, and qSRMP12 for seed reserve mobilization percentage were identified. In which, the candidate gene cytochrome b5 (OsCyb5) for the major QTL qSRMP9 was validated. Disruption of this gene in Oscyb5 mutants reduced the seed reserve mobilization and seedling growth compared with wild-type (WT) in rice. There were no significant differences of grain size, starch, protein and total soluble sugar content in the mature grains between Oscyb5 mutants and WT. However, the α-amylase activity in the germinating seeds of Oscyb5 mutants was significantly decreased compared to that of WT, and then, the starch and sugar mobilization and the glucose accumulation during seed germination were significantly decreased in Oscyb5 mutants. Two elite haplotypes of OsCyb5 associated with the higher seed reserve mobilization percentage and its elite single nucleotide polymorphism variations were mainly existed in the INDICA and AUS accessions. The natural variation of OsCyb5 contributing to seed reserve mobilization might be useful for the future rice breeding.
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Affiliation(s)
- Zhibo Huang
- The Laboratory of Seed Science and Technology, Guangdong Key Laboratory of Plant Molecular Breeding, Guangdong Laboratory of Lingnan Modern Agriculture, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, 510642, China
| | - Jifeng Ying
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, 310006, China
| | - Liling Peng
- The Laboratory of Seed Science and Technology, Guangdong Key Laboratory of Plant Molecular Breeding, Guangdong Laboratory of Lingnan Modern Agriculture, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, 510642, China
| | - Shan Sun
- The Laboratory of Seed Science and Technology, Guangdong Key Laboratory of Plant Molecular Breeding, Guangdong Laboratory of Lingnan Modern Agriculture, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, 510642, China
| | - Chengwei Huang
- The Laboratory of Seed Science and Technology, Guangdong Key Laboratory of Plant Molecular Breeding, Guangdong Laboratory of Lingnan Modern Agriculture, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, 510642, China
| | - Can Li
- The Laboratory of Seed Science and Technology, Guangdong Key Laboratory of Plant Molecular Breeding, Guangdong Laboratory of Lingnan Modern Agriculture, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, 510642, China
| | - Zhoufei Wang
- The Laboratory of Seed Science and Technology, Guangdong Key Laboratory of Plant Molecular Breeding, Guangdong Laboratory of Lingnan Modern Agriculture, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, 510642, China.
| | - Yongqi He
- The Laboratory of Seed Science and Technology, Guangdong Key Laboratory of Plant Molecular Breeding, Guangdong Laboratory of Lingnan Modern Agriculture, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, 510642, China.
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14
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Wang Y, Zhang M, Dong S, Liu YL, Li ZH. The Opposite Roles of White Light in Regulating Germination of Fresh and Aged Seed in Tobacco. PLANTS 2021; 10:plants10112457. [PMID: 34834820 PMCID: PMC8618267 DOI: 10.3390/plants10112457] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/05/2021] [Revised: 11/10/2021] [Accepted: 11/10/2021] [Indexed: 12/03/2022]
Abstract
Light is one of the important environmental factors for seeds to evaluate whether the natural environment is appropriate for germination and subsequent seedlings emergence. The mechanism of light-mediated germination is mainly concerned with fresh seeds (FS) of model plants but is poorly understood in aged seeds. Here, the effects of light on germination of FS and naturally aged seeds (NAS) in tobacco and their relationship with plant hormones gibberellins (GA) and abscisic acid (ABA) were investigated. The results demonstrated that light promoted and inhibited the germination of FS and NAS, respectively. GA and ABA were involved in the germination control of NAS, as well as in FS. However, light suppressed GA signal and stimulated ABA signal in NAS, whereas it stimulated GA signal and suppressed ABA signal in FS. In addition, light stimulated the GA accumulation and reduction in ABA in FS while inhibiting the increase in GA level in NAS. Together, the present study demonstrates that light has opposite effects on the germination of FS and NAS, which are closely related to the metabolism and/or signaling of plant hormones ABA and GA.
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Affiliation(s)
- Yao Wang
- College of Agriculture, University of Guizhou, Guiyang 550025, China; (Y.W.); (M.Z.); (S.D.)
| | - Min Zhang
- College of Agriculture, University of Guizhou, Guiyang 550025, China; (Y.W.); (M.Z.); (S.D.)
| | - Shuai Dong
- College of Agriculture, University of Guizhou, Guiyang 550025, China; (Y.W.); (M.Z.); (S.D.)
| | - Yi-Ling Liu
- Key Laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), University of Guizhou, Guiyang 550025, China;
| | - Zhen-Hua Li
- College of Agriculture, University of Guizhou, Guiyang 550025, China; (Y.W.); (M.Z.); (S.D.)
- Correspondence:
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15
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Wang C, Hao N, Xia Y, Du Y, Huang K, Wu T. CsKDO is a candidate gene regulating seed germination lethality in cucumber. BREEDING SCIENCE 2021; 71:417-425. [PMID: 34912168 PMCID: PMC8661486 DOI: 10.1270/jsbbs.20149] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/12/2020] [Accepted: 04/18/2021] [Indexed: 06/14/2023]
Abstract
Seed germination plays an important role in the initial stage of plant growth. However, few related studies focused on lethality after seed germination in plants. In this study, we identified an Ethyl methanesulfonate (EMS) mutagenesis mutant Csleth with abnormal seed germination in cucumber (Cucumis sativus L.). The radicle of the Csleth mutant grew slowly and detached from the cotyledon until 14 d after sowing. Genetic analysis showed that the mutant phenotype of Csleth was controlled by a single recessive gene. MutMap+ and Kompetitive Allele Specific PCR (KASP) genotyping results demonstrated that Csa3G104930 encoding 3-deoxy-manno-octulosonate cytidylyltransferase (CsKDO) was the candidate gene of the Csleth mutant. The transition mutation of aspartate occurred in Csa3G104930 co-segregated with the phenotyping data. CsKDO was highly expressed in male flowers in wild type cucumbers. Subcellular localization results showed that CsKDO was located in the nucleus. Overall, these results suggest CsKDO regulates lethality during seed germination in cucumber.
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Affiliation(s)
- Chen Wang
- College of Horticulture and Landscape, Hunan Agricultural
University, 1 Nongda Road, Changsha 410128,
China
- College of Horticulture and Landscape, Northeast Agricultural
University, 600 Changjiang Road, Harbin 150030,
China
- Engineering Research Center for Horticultural Crop Germplasm Creation and
New Variety Breeding, Ministry of Education, 1 Nongda Road,
Changsha 410128, China
- Key Labortory for Vegetable Biology of Hunan Province,
1 Nongda Road, Changsha 410128, China
| | - Ning Hao
- College of Horticulture and Landscape, Northeast Agricultural
University, 600 Changjiang Road, Harbin 150030,
China
| | - Yutong Xia
- College of Horticulture and Landscape, Hunan Agricultural
University, 1 Nongda Road, Changsha 410128,
China
- Engineering Research Center for Horticultural Crop Germplasm Creation and
New Variety Breeding, Ministry of Education, 1 Nongda Road,
Changsha 410128, China
- Key Labortory for Vegetable Biology of Hunan Province,
1 Nongda Road, Changsha 410128, China
| | - Yalin Du
- College of Horticulture and Landscape, Hunan Agricultural
University, 1 Nongda Road, Changsha 410128,
China
- Engineering Research Center for Horticultural Crop Germplasm Creation and
New Variety Breeding, Ministry of Education, 1 Nongda Road,
Changsha 410128, China
- Key Labortory for Vegetable Biology of Hunan Province,
1 Nongda Road, Changsha 410128, China
| | - Ke Huang
- College of Horticulture and Landscape, Hunan Agricultural
University, 1 Nongda Road, Changsha 410128,
China
- Engineering Research Center for Horticultural Crop Germplasm Creation and
New Variety Breeding, Ministry of Education, 1 Nongda Road,
Changsha 410128, China
- Key Labortory for Vegetable Biology of Hunan Province,
1 Nongda Road, Changsha 410128, China
| | - Tao Wu
- College of Horticulture and Landscape, Hunan Agricultural
University, 1 Nongda Road, Changsha 410128,
China
- College of Horticulture and Landscape, Northeast Agricultural
University, 600 Changjiang Road, Harbin 150030,
China
- Engineering Research Center for Horticultural Crop Germplasm Creation and
New Variety Breeding, Ministry of Education, 1 Nongda Road,
Changsha 410128, China
- Key Labortory for Vegetable Biology of Hunan Province,
1 Nongda Road, Changsha 410128, China
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16
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Zhang XL, Huang XL, Li J, Mei M, Zeng WQ, Lu XJ. Evaluation of the RNA extraction methods in different Ginkgo biloba L. tissues. Biologia (Bratisl) 2021. [DOI: 10.1007/s11756-021-00766-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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17
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Wang X, Hu H, Li F, Yang B, Komatsu S, Zhou S. Quantitative proteomics reveals dual effects of calcium on radicle protrusion in soybean. J Proteomics 2021; 230:103999. [PMID: 33017647 DOI: 10.1016/j.jprot.2020.103999] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2020] [Revised: 09/20/2020] [Accepted: 09/29/2020] [Indexed: 11/18/2022]
Abstract
To reveal calcium-mediated germination in soybean, a gel-free/label-free proteomics was performed in radicle of seed imbibed with CaCl2. Morphological analysis presented promoting and suppressing performance of seed growth under 5 and 50 mM CaCl2, respectively. A total of 106 and 581 proteins were identified in response to 5 and 50 mM CaCl2, respectively. Among 33 proteins, which were simultaneously affected by 5 and 50 mM CaCl2 imbibition, proteins related to protein metabolism, cell, development, and stress showed reversed abundance in response to CaCl2 on dose-dependent manner. Notably, protein abundance of late embryogenesis abundant (LEA) 4-5, LEA4, and dehydrin decreased and increased by 5 and 50 mM CaCl2, respectively, consistent with the transcript level. Moreover, inhibited biosynthesis of gibberellic acid repressed growth of 5 mM CaCl2-imbibed soybean, while inhibition of abscisic acid biosynthesis released the suppressing effects of 50 mM CaCl2. Taken together, these results suggest that decreased or increased protein abundance of LEA4-5, LEA4, and dehydrin might determine promoting or suppressing effects of low or high level of calcium on soybean through enhancing seed sensitivity to gibberellic acid or abscisic acid during radicle protrusion. SIGNIFICANCE: Calcium serves as a versatile signal in plant growth; however, calcium-mediated germination on dose-dependent manner remains elusive. In this study, dual effects of calcium on radicle protrusion in soybean were investigated using proteomic approach. Radicle growth of germinating seed was improved by 5 mM CaCl2; however, it was retarded by 50 mM CaCl2. Late embryogenesis abundant (LEA) 4-5, LEA4, and dehydrin displayed converse profiles in response to low and high concentrations of CaCl2 at both protein abundance and gene expression level. Inhibited biosynthesis of gibberellic acid (GA) significantly impeded radicle protrusion in presence of low concentration of CaCl2, while inhibiting of abscisic acid (ABA) biosynthesis released suppression induced by high concentration of CaCl2. These findings suggest that LEA proteins are associated with calcium-mediated radicle protrusion on dose-dependent manner, and seed sensitivity to GA and ABA might determine promoting and suppressing effects of calcium on radicle protrusion in soybean.
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Affiliation(s)
- Xin Wang
- College of Agronomy and Biotechnology, China Agricultural University, Beijing 100193, China
| | - Han Hu
- College of Agronomy and Biotechnology, China Agricultural University, Beijing 100193, China
| | - Fang Li
- College of Agronomy and Biotechnology, China Agricultural University, Beijing 100193, China
| | - Bingxian Yang
- College of Life Sciences and Medicine, Zhejiang Sci-Tech University, Hangzhou 310018, China
| | - Setsuko Komatsu
- Faculty of Environmental and Information Sciences, Fukui University of Technology, Fukui 910-8505, Japan
| | - Shunli Zhou
- College of Agronomy and Biotechnology, China Agricultural University, Beijing 100193, China.
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18
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Chen MX, Lu CC, Sun PC, Nie YX, Tian Y, Hu QJ, Das D, Hou XX, Gao B, Chen X, Liu SX, Zheng CC, Zhao XY, Dai L, Zhang J, Liu YG. Comprehensive transcriptome and proteome analyses reveal a novel sodium chloride responsive gene network in maize seed tissues during germination. PLANT, CELL & ENVIRONMENT 2021; 44:88-101. [PMID: 32677712 DOI: 10.1111/pce.13849] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2020] [Revised: 04/25/2020] [Accepted: 05/12/2020] [Indexed: 05/20/2023]
Abstract
Germination is a plant developmental process by which radicle of mature seeds start to penetrate surrounding barriers for seedling establishment and multiple environmental factors have been shown to affect it. Little is known how high salinity affects seed germination of C4 plant, Zea mays. Preliminary germination assay suggested that isolated embryo alone was able to germinate under 200 mM NaCl treatment, whereas the intact seeds were highly repressed. We hypothesized that maize endosperm may function in perception and transduction of salt signal to surrounding tissues such as embryo, showing a completely different response to that in Arabidopsis. Since salt response involves ABA, we analysed in vivo ABA distribution and quantity and the result demonstrated that ABA level in isolated embryo under NaCl treatment failed to increase in comparison with the water control, suggesting that the elevation of ABA level is an endosperm dependent process. Subsequently, by using advanced profiling techniques such as RNA sequencing and SWATH-MS-based quantitative proteomics, we found substantial differences in post-transcriptional and translational changes between salt-treated embryo and endosperm. In summary, our results indicate that these regulatory mechanisms, such as alternative splicing, are likely to mediate early responses to salt stress during maize seed germination.
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Affiliation(s)
- Mo-Xian Chen
- State Key Laboratory of Crop Biology, College of Life Science, Shandong Agricultural University, Taian, China
- Southern Regional Collaborative Innovation Centre for Grain and Oil Crops in China, Hunan Agricultural University, Changsha, China
- CAS Key Laboratory of Quantitative Engineering Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China
| | - Chong-Chong Lu
- State Key Laboratory of Crop Biology, College of Life Science, Shandong Agricultural University, Taian, China
| | - Peng-Cheng Sun
- State Key Laboratory of Crop Biology, College of Life Science, Shandong Agricultural University, Taian, China
| | - Yong-Xin Nie
- State Key Laboratory of Crop Biology, College of Life Science, Shandong Agricultural University, Taian, China
| | - Yuan Tian
- State Key Laboratory of Crop Biology, College of Life Science, Shandong Agricultural University, Taian, China
| | - Qi-Juan Hu
- Department of Biology, Hong Kong Baptist University, Shatin, Hong Kong
- State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, Hong Kong
| | - Debatosh Das
- Department of Biology, Hong Kong Baptist University, Shatin, Hong Kong
- State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, Hong Kong
| | - Xuan-Xuan Hou
- State Key Laboratory of Crop Biology, College of Life Science, Shandong Agricultural University, Taian, China
| | - Bei Gao
- Department of Biology, Hong Kong Baptist University, Shatin, Hong Kong
- State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, Hong Kong
| | - Xi Chen
- Wuhan Institute of Biotechnology, Wuhan, China
| | - Shou-Xu Liu
- State Key Laboratory of Crop Biology, College of Life Science, Shandong Agricultural University, Taian, China
| | - Cheng-Chao Zheng
- State Key Laboratory of Crop Biology, College of Life Science, Shandong Agricultural University, Taian, China
| | - Xiang-Yu Zhao
- State Key Laboratory of Crop Biology, College of Life Science, Shandong Agricultural University, Taian, China
| | - Lei Dai
- CAS Key Laboratory of Quantitative Engineering Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China
| | - Jianhua Zhang
- State Key Laboratory of Crop Biology, College of Life Science, Shandong Agricultural University, Taian, China
- Department of Biology, Hong Kong Baptist University, Shatin, Hong Kong
| | - Ying-Gao Liu
- State Key Laboratory of Crop Biology, College of Life Science, Shandong Agricultural University, Taian, China
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19
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Wojciechowska N, Alipour S, Stolarska E, Bilska K, Rey P, Kalemba EM. Involvement of the MetO/Msr System in Two Acer Species That Display Contrasting Characteristics during Germination. Int J Mol Sci 2020; 21:E9197. [PMID: 33276642 PMCID: PMC7730483 DOI: 10.3390/ijms21239197] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2020] [Revised: 11/17/2020] [Accepted: 12/01/2020] [Indexed: 01/20/2023] Open
Abstract
The levels of methionine sulfoxide (MetO) and the abundances of methionine sulfoxide reductases (Msrs) were reported as important for the desiccation tolerance of Acer seeds. To determine whether the MetO/Msrs system is related to reactive oxygen species (ROS) and involved in the regulation of germination in orthodox and recalcitrant seeds, Norway maple and sycamore were investigated. Changes in water content, MetO content, the abundance of MsrB1 and MsrB2 in relation to ROS content and the activity of reductases depending on nicotinamide adenine dinucleotides were monitored. Acer seeds differed in germination speed-substantially higher in sycamore-hydration dynamics, levels of hydrogen peroxide, superoxide anion radicals (O2•-) and hydroxyl radicals (•OH), which exhibited peaks at different stages of germination. The MetO level dynamically changed, particularly in sycamore embryonic axes, where it was positively correlated with the levels of O2•- and the abundance of MsrB1 and negatively with the levels of •OH and the abundance of MsrB2. The MsrB2 abundance increased upon sycamore germination; in contrast, it markedly decreased in Norway maple. We propose that the ROS-MetO-Msr redox system, allowing balanced Met redox homeostasis, participates in the germination process in sycamore, which is characterized by a much higher speed compared to Norway maple.
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Affiliation(s)
- Natalia Wojciechowska
- Institute of Dendrology, Polish Academy of Sciences, Parkowa 5, 62-035 Kórnik, Poland; (N.W.); (S.A.); (E.S.); (K.B.)
- Department of General Botany, Institute of Experimental Biology, Faculty of Biology, Adam Mickiewicz University, Uniwersytetu Poznańskiego 6, 61-614 Poznań, Poland
| | - Shirin Alipour
- Institute of Dendrology, Polish Academy of Sciences, Parkowa 5, 62-035 Kórnik, Poland; (N.W.); (S.A.); (E.S.); (K.B.)
| | - Ewelina Stolarska
- Institute of Dendrology, Polish Academy of Sciences, Parkowa 5, 62-035 Kórnik, Poland; (N.W.); (S.A.); (E.S.); (K.B.)
| | - Karolina Bilska
- Institute of Dendrology, Polish Academy of Sciences, Parkowa 5, 62-035 Kórnik, Poland; (N.W.); (S.A.); (E.S.); (K.B.)
| | - Pascal Rey
- Plant Protective Proteins (PPV) Team, Centre National de la Recherche Scientifique (CNRS), Commissariat à l’Energie Atomique et aux Energies Alternatives (CEA), Biosciences and Biotechnology Institute of Aix-Marseille (BIAM), Aix Marseille University (AMU), 13108 Saint Paul-Lez-Durance, France;
| | - Ewa M. Kalemba
- Institute of Dendrology, Polish Academy of Sciences, Parkowa 5, 62-035 Kórnik, Poland; (N.W.); (S.A.); (E.S.); (K.B.)
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Proteomics analysis of Cyclobalanopsis gilva provides new insights of low seed germination. Biochimie 2020; 180:68-78. [PMID: 33250447 DOI: 10.1016/j.biochi.2020.10.008] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2020] [Revised: 10/18/2020] [Accepted: 10/19/2020] [Indexed: 12/27/2022]
Abstract
A valuable plant, Cyclobalanopsis gilva, (C. gilva) has a low germination rate (below 50%) under its natural habitations. In order to examine the reasons for the low germination rate, the seeds of C. gilva (germinated and non-germinated) were evaluated using comparative proteomics analysis. A total of 3078 differentially abundant proteins (DAPs) were identified through a label-free method; most DAPs up-accumulated in germinated seeds were related to carbohydrates metabolism. Furthermore the proteins related to the signals, stress, and protein metabolism showed up-accumulation in germinated and no abundance or down-accumulation in non-germinated seeds. Enzyme activity of HK, PGK, PFK, and PK from glycolysis in SG-Control samples were 1.7-, 1.1-, 1.4-, and 1.3-times higher compared with those in control ones while CS, NAD-MDH, α-KGDH, and ICDH from the TCA cycle in SG-Control samples were 3, 1.1, 1.2, and 1.2 times higher than those in NG-Control ones. The β-amylase activity was 4-fold higher in successfully germinated seeds compared to non-germinated seeds. Interestingly, α-amylase did not show significant changes in protein abundance and enzyme activity among the three samples. The present findings reveal that unsuccessful germination of C. gilva seeds is due to lack of energy.
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Hewage KAH, Yang J, Wang D, Hao G, Yang G, Zhu J. Chemical Manipulation of Abscisic Acid Signaling: A New Approach to Abiotic and Biotic Stress Management in Agriculture. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2020; 7:2001265. [PMID: 32999840 PMCID: PMC7509701 DOI: 10.1002/advs.202001265] [Citation(s) in RCA: 51] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2020] [Revised: 06/11/2020] [Indexed: 05/02/2023]
Abstract
The phytohormone abscisic acid (ABA) is the best-known stress signaling molecule in plants. ABA protects sessile land plants from biotic and abiotic stresses. The conserved pyrabactin resistance/pyrabactin resistance-like/regulatory component of ABA receptors (PYR/PYL/RCAR) perceives ABA and triggers a cascade of signaling events. A thorough knowledge of the sequential steps of ABA signaling will be necessary for the development of chemicals that control plant stress responses. The core components of the ABA signaling pathway have been identified with adequate characterization. The information available concerning ABA biosynthesis, transport, perception, and metabolism has enabled detailed functional studies on how the protective ability of ABA in plants might be modified to increase plant resistance to stress. Some of the significant contributions to chemical manipulation include ABA biosynthesis inhibitors, and ABA receptor agonists and antagonists. Chemical manipulation of key control points in ABA signaling is important for abiotic and biotic stress management in agriculture. However, a comprehensive review of the current knowledge of chemical manipulation of ABA signaling is lacking. Here, a thorough analysis of recent reports on small-molecule modulation of ABA signaling is provided. The challenges and prospects in the chemical manipulation of ABA signaling for the development of ABA-based agrochemicals are also discussed.
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Affiliation(s)
- Kamalani Achala H. Hewage
- Key Laboratory of Pesticide & Chemical BiologyMinistry of EducationCollege of ChemistryCentral China Normal UniversityWuhan430079P. R. China
- International Joint Research Center for Intelligent Biosensor Technology and HealthCentral China Normal UniversityWuhan430079P. R. China
| | - Jing‐Fang Yang
- Key Laboratory of Pesticide & Chemical BiologyMinistry of EducationCollege of ChemistryCentral China Normal UniversityWuhan430079P. R. China
- International Joint Research Center for Intelligent Biosensor Technology and HealthCentral China Normal UniversityWuhan430079P. R. China
| | - Di Wang
- Key Laboratory of Pesticide & Chemical BiologyMinistry of EducationCollege of ChemistryCentral China Normal UniversityWuhan430079P. R. China
- International Joint Research Center for Intelligent Biosensor Technology and HealthCentral China Normal UniversityWuhan430079P. R. China
| | - Ge‐Fei Hao
- Key Laboratory of Pesticide & Chemical BiologyMinistry of EducationCollege of ChemistryCentral China Normal UniversityWuhan430079P. R. China
- International Joint Research Center for Intelligent Biosensor Technology and HealthCentral China Normal UniversityWuhan430079P. R. China
| | - Guang‐Fu Yang
- Key Laboratory of Pesticide & Chemical BiologyMinistry of EducationCollege of ChemistryCentral China Normal UniversityWuhan430079P. R. China
- International Joint Research Center for Intelligent Biosensor Technology and HealthCentral China Normal UniversityWuhan430079P. R. China
- Collaborative Innovation Center of Chemical Science and EngineeringTianjin300072P. R. China
| | - Jian‐Kang Zhu
- Shanghai Center for Plant Stress Biologyand CAS Center of Excellence in Molecular Plant SciencesChinese Academy of SciencesShanghai20032P. R. China
- Department of Horticulture and Landscape ArchitecturePurdue UniversityWest LafayetteIN47907USA
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Lando AP, Viana WG, Vale EM, Santos M, Silveira V, Steiner N. Cellular alteration and differential protein profile explain effects of GA 3 and ABA and their inhibitor on Trichocline catharinensis (Asteraceae) seed germination. PHYSIOLOGIA PLANTARUM 2020; 169:258-275. [PMID: 32065665 DOI: 10.1111/ppl.13076] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2019] [Revised: 02/09/2020] [Accepted: 02/13/2020] [Indexed: 06/10/2023]
Abstract
Seed physiology of wild species has not been studied as deeply as that of domesticated crop species. Trichocline catharinensis (Asteraceae) is an endemic wildflower species from the high-altitude fields of southern Brazil. This species is of interest as a source of genes to improve cultivated Asteraceae because of its ornamental features, disease resistance and ability to tolerate drought and poor soil conditions. We studied the effects of abscisic acid (ABA) and gibberellic acid (GA3 ) and their inhibitors, fluridone (FLU) and paclobutrazol (PAC), on seed germination. We individually assessed ultrastructural changes and differential protein accumulation. The principal component analysis explained 69.66% of differential accumulation for 32 proteins at phase II of seed germination in response to hormone and inhibitor treatment. GA3 -imbibed seed germination (98.75%) resulted in increased protein accumulation to meet energy demand, redox regulation, and reserve metabolism activation. FLU-imbibed seeds showed a higher germination speed index as a consequence of metabolism activation. ABA-imbibed seeds (58.75%) showed osmotolerance and flattened cells in the hypocotyl-radicular axis, suggesting that ABA inhibits cell expansion. PAC-imbibed seeds remained at phase II for 300 h, and germination was suppressed (7.5%) because of the increased signaling proteins and halted reserve mobilization. Therefore, our findings provide insight into the behavior of Asteraceae non-dormant seed germination, which broadens our knowledge of seed germination in a wild and endemic plant species from a threatened ecosystem.
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Affiliation(s)
- Ana P Lando
- Plant Physiology Laboratory, Department of Botany, Federal University of Santa Catarina, Florianópolis, SC, 88040-900, Brazil
| | - Willian G Viana
- Plant Physiology Laboratory, Department of Botany, Federal University of Santa Catarina, Florianópolis, SC, 88040-900, Brazil
| | - Ellen M Vale
- Laboratory of Biotechnology, Center for Biosciences and Biotechnology (CBB), State University of Northern Rio de Janeiro (UENF), Campos dos Goytacazes, RJ, 28013-602, Brazil
- Unit of Integrative Biology, Genomic and Proteomics Sector, UENF, Campos dos Goytacazes, RJ, 28013-602, Brazil
| | - Marisa Santos
- Plant Physiology Laboratory, Department of Botany, Federal University of Santa Catarina, Florianópolis, SC, 88040-900, Brazil
| | - Vanildo Silveira
- Laboratory of Biotechnology, Center for Biosciences and Biotechnology (CBB), State University of Northern Rio de Janeiro (UENF), Campos dos Goytacazes, RJ, 28013-602, Brazil
- Unit of Integrative Biology, Genomic and Proteomics Sector, UENF, Campos dos Goytacazes, RJ, 28013-602, Brazil
| | - Neusa Steiner
- Plant Physiology Laboratory, Department of Botany, Federal University of Santa Catarina, Florianópolis, SC, 88040-900, Brazil
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Yan H, Chaumont N, Gilles JF, Bolte S, Hamant O, Bailly C. Microtubule self-organisation during seed germination in Arabidopsis. BMC Biol 2020; 18:44. [PMID: 32354334 PMCID: PMC7191766 DOI: 10.1186/s12915-020-00774-8] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2020] [Accepted: 03/26/2020] [Indexed: 11/17/2022] Open
Abstract
BACKGROUND Upon water uptake and release of seed dormancy, embryonic plant cells expand, while being mechanically constrained by the seed coat. Cortical microtubules (CMTs) are key players of cell elongation in plants: their anisotropic orientation channels the axis of cell elongation through the guidance of oriented deposition of load-bearing cellulose microfibrils in the cell wall. Interestingly, CMTs align with tensile stress, and consistently, they reorient upon compressive stress in growing hypocotyls. How CMTs first organise in germinating embryos is unknown, and their relation with mechanical stress has not been investigated at such an early developing stage. RESULTS Here, we analysed CMT dynamics in dormant and non-dormant Arabidopsis seeds by microscopy of fluorescently tagged microtubule markers at different developmental time points and in response to abscisic acid and gibberellins. We found that CMTs first appear as very few thick bundles in dormant seeds. Consistently, analysis of available transcriptome and translatome datasets show that limiting amounts of tubulin and microtubule regulators initially hinder microtubule self-organisation. Seeds imbibed in the presence of gibberellic acid or abscisic acid displayed altered microtubule organisation and transcriptional regulation. Upon the release of dormancy, CMTs then self-organise into multiple parallel transverse arrays. Such behaviour matches the tensile stress patterns in such mechanically constrained embryos. This suggests that, as CMTs first self-organise, they also align with shape-derived tensile stress patterns. CONCLUSIONS Our results provide a scenario in which dormancy release in the embryo triggers microtubule self-organisation and alignment with tensile stress prior to germination and anisotropic growth.
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Affiliation(s)
- Huifang Yan
- Laboratoire de Biologie du Développement, Sorbonne Université, CNRS, F-75005, Paris, France
- Key Laboratory of Pratacultural Science, Beijing Municipality, China Agricultural University, Beijing, 100193, China
- Grassland Agri-Husbandry Research Center, College of Grassland Science, Qingdao Agricultural University, Qingdao, 266109, China
| | - Nicole Chaumont
- Laboratoire de Biologie du Développement, Sorbonne Université, CNRS, F-75005, Paris, France
| | - Jean François Gilles
- Imaging Core Facility, CNRS-FRE3631-Institut de Biologie Paris Seine, Sorbonne Université, F-75005, Paris, France
| | - Susanne Bolte
- Imaging Core Facility, CNRS-FRE3631-Institut de Biologie Paris Seine, Sorbonne Université, F-75005, Paris, France
| | - Olivier Hamant
- Laboratoire de Reproduction et Développement des Plantes, Université de Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRA, F-69000, Lyon, France
| | - Christophe Bailly
- Laboratoire de Biologie du Développement, Sorbonne Université, CNRS, F-75005, Paris, France.
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Ebone LA, Caverzan A, Chavarria G. Physiologic alterations in orthodox seeds due to deterioration processes. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2019; 145:34-42. [PMID: 31665665 DOI: 10.1016/j.plaphy.2019.10.028] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2019] [Revised: 10/17/2019] [Accepted: 10/18/2019] [Indexed: 05/22/2023]
Abstract
Seed deterioration is a partially elucidated phenomenon that happen during the life of the seed. This review describes the processes that lead to seed deterioration, including loss of seed protection capacity against reactive oxygen species (ROS), damage to the plasma membrane, consumption of reserves, and damage to genetic material. A hypothesis of how seed deterioration occurs was also addressed; in this hypothesis, seed deterioration was divided into three phases. The first is the beginning of deterioration, with a slight reduction of vigor caused by the reactions of reducing sugars with antioxidant enzymes and genetic material. In the second, the cell shows oxidative damages, causing lipid peroxidation, which leads to the leaching of solutes, the formation of malondialdehyde, and, consequently, an increase in damages to genetic material. In the third phase, there is cell collapse with mitochondrial membrane deconstruction and a high accumulation of reactive oxygen species, malondialdehyde, and reducing sugars.
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Affiliation(s)
- Luciano Antônio Ebone
- Laboratory of Plant Physiology, Agronomy Post-Graduate Program, University of Passo Fundo, Passo Fundo, Rio Grande do Sul, Brazil.
| | - Andréia Caverzan
- Laboratory of Plant Physiology, Agronomy Post-Graduate Program, University of Passo Fundo, Passo Fundo, Rio Grande do Sul, Brazil.
| | - Geraldo Chavarria
- Laboratory of Plant Physiology, Agronomy Post-Graduate Program, University of Passo Fundo, Passo Fundo, Rio Grande do Sul, Brazil.
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E3 SUMO ligase AtSIZ1 regulates the cruciferin content of Arabidopsis seeds. Biochem Biophys Res Commun 2019; 519:761-766. [PMID: 31547986 DOI: 10.1016/j.bbrc.2019.09.064] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2019] [Accepted: 09/17/2019] [Indexed: 11/20/2022]
Abstract
Arabidopsis thaliana E3 SUMO ligase SIZ1 (AtSIZ1) controls vegetative growth and development, including responses to nutrient deficiency and environmental stresses. Here, we analyzed the effect of AtSIZ1 and its E3 SUMO ligase activity on the amount of seed proteins. Proteomic analysis showed that the level of three major nutrient reservoir proteins, CRUCIFERIN1 (CRU1), CRU2, and CRU3, was reduced in the siz1-2 mutant compared with the wild type. However, quantitative real-time PCR (qRT-PCR) analysis showed that transcript levels of CRU1, CRU2, and CRU3 genes were significantly higher in the siz1-2 mutant than in the wild type. Yeast two-hybrid analysis revealed direct interaction of AtSIZ1 with CRU1, CRU2, and CRU3. The sumoylation assay revealed that CRU2, and CRU3 proteins were modified with a small ubiquitin-related modifier (SUMO) by the E3 SUMO ligase activity of AtSIZ1. Additionally, high-performance liquid chromatography (HPLC) analysis showed that the amino acid content was slightly higher in siz1-2 mutant seeds than in wild type seeds. Taken together, our data indicate that AtSIZ1 plays an important role in the accumulation and stability of seed storage proteins through its E3 ligase activity.
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26
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Amir R, Cohen H, Hacham Y. Revisiting the attempts to fortify methionine content in plant seeds. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:4105-4114. [PMID: 30911752 DOI: 10.1093/jxb/erz134] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2018] [Accepted: 03/18/2019] [Indexed: 06/09/2023]
Abstract
The sulfur-containing amino acid methionine belongs to the group of essential amino acids, meaning that humans and animals must consume it in their diets. However, plant seeds have low levels of methionine, limiting their nutritional potential. For this reason, efforts have been made over the years to increase methionine levels in seeds. Here, we summarize these efforts and focus particularly on those utilizing diverse genetic and molecular tools. Four main approaches are described: (i) expression of methionine-rich storage proteins in a seed-specific manner to incorporate more soluble methionine into the protein fraction; (ii) reduction of methionine-poor storage proteins inside the seeds to reinforce the accumulation of methionine-rich proteins; (iii) silencing methionine catabolic enzymes; and (iv) up-regulation of key biosynthetic enzymes participating in methionine synthesis. We focus on the biosynthetic genes that operate de novo in seeds and that belong to the sulfur assimilation and aspartate family pathways, as well as genes from the methionine-specific pathway. We also include those enzymes that operate in non-seed tissues that contribute to the accumulation of methionine in seeds, such as S-methylmethionine enzymes. Finally, we discuss the biotechnological potential of these manipulations to increase methionine content in plant seeds and their effect on seed germination.
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Affiliation(s)
- Rachel Amir
- Laboratory of Plant Science, Migal - Galilee Technology Center, Kiryat Shmona, Israel
- Tel-Hai College, Upper Galilee, Israel
| | - Hagai Cohen
- Department of Plant & Environmental Sciences, Weizmann Institute of Science, Rehovot, Israel
| | - Yael Hacham
- Laboratory of Plant Science, Migal - Galilee Technology Center, Kiryat Shmona, Israel
- Tel-Hai College, Upper Galilee, Israel
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Garduza-Acosta B, Lagunes-Espinoza LC, Bautista-Muñoz CC, García-de-Los-Santos G, Zaldívar-Cruz JM, Hernández-Flores A. Germination of Crotalaria and Lupinus (Fabaceae) seeds submitted to different pre-germination treatments and their effect on enzymatic activity during early germination. BRAZ J BIOL 2019; 80:23-29. [PMID: 31017230 DOI: 10.1590/1519-6984.185813] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2017] [Accepted: 05/16/2018] [Indexed: 11/21/2022] Open
Abstract
Most of the wild and native legume seeds has a hard and impermeable testa, which causes physical dormancy and prevents them from germinating even when environmental conditions are favorable. The study evaluated the effect of scarification treatments on germination and enzymatic activity of Crotalaria longirostrata (Cl) and Lupinus exaltatus (Le) seeds. After scarification treatments, germination percentage (GP) and rate (GR) were assessed during 30 days after seeding (DAS); and water absorption (WA) and specific enzymatic activity (SEA) during early germination (0, 6, 18, 36, 72, 120 h) in a growing chamber at 25 °C and photoperiod of 12 h. Scarification with 98% H2SO4 15 min increased GP and GR in both species. At 30 DAS, GP and GR of Le seeds were 34% and 0.97 seeds day-1, respectively. In Cl seeds, GP was 64% and GR 0.90 seeds day-1. Scarification with H2O at 80 °C 1 min also promoted germination in Cl (52%). At 120 h after seeding, Le and Cl seeds showed already a high GP with acid scarification (31% and 48%, respectively). In seeds of both species, scarification treatments affected WA and SEA during early germination. During this period, scarification treatments that increased GP also showed a higher α-D-galactosidase activity. The maximum enzyme activity was observed 72 h after hot water scarification in Cl (82.6 U/mg total protein), followed by acid scarification (54.5 U/mg total protein). In Le, the activity peak was 36 h after acid scarification (9.5 U/mg total protein). No relationship was observed between β-glucosidase activity and GP in both species. In conclusion, during early germination of both species, the increase in GP is accompanied by a rise in α-D-galactosidase activity between 36 and 72 h after seeding; and in Cl seeds, an alternative scarification treatment to increase GP may be the use of hot water.
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Affiliation(s)
- B Garduza-Acosta
- Laboratório de Fisiologia Vegetal, Pós-graduação em Produção Agroalimentar nos Trópicos, Área Agrícola, Colegio de Postgraduados - CP, Campus Tabasco, Periférico Carlos A. Molina, s/n, 86500, H. Cárdenas, Tabasco, México
| | - L C Lagunes-Espinoza
- Laboratório de Fisiologia Vegetal, Pós-graduação em Produção Agroalimentar nos Trópicos, Área Agrícola, Colegio de Postgraduados - CP, Campus Tabasco, Periférico Carlos A. Molina, s/n, 86500, H. Cárdenas, Tabasco, México
| | - C C Bautista-Muñoz
- Laboratório de Fisiologia Vegetal, Pós-graduação em Produção Agroalimentar nos Trópicos, Área Agrícola, Colegio de Postgraduados - CP, Campus Tabasco, Periférico Carlos A. Molina, s/n, 86500, H. Cárdenas, Tabasco, México
| | - G García-de-Los-Santos
- Pós-graduação em Produção de Sementes, Área de Produção e Tecnologia de Sementes, Colegio de Postgraduados - CP, Campus Montecillo, Km 36.5, Carretera México-Texcoco, 56230, Montecillo, Texcoco, Edo de México, México
| | - J M Zaldívar-Cruz
- Laboratório de Fisiologia Vegetal, Pós-graduação em Produção Agroalimentar nos Trópicos, Área Agrícola, Colegio de Postgraduados - CP, Campus Tabasco, Periférico Carlos A. Molina, s/n, 86500, H. Cárdenas, Tabasco, México
| | - A Hernández-Flores
- Laboratório de Fisiologia Vegetal, Pós-graduação em Produção Agroalimentar nos Trópicos, Área Agrícola, Colegio de Postgraduados - CP, Campus Tabasco, Periférico Carlos A. Molina, s/n, 86500, H. Cárdenas, Tabasco, México
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Poisson E, Trouverie J, Brunel-Muguet S, Akmouche Y, Pontet C, Pinochet X, Avice JC. Seed Yield Components and Seed Quality of Oilseed Rape Are Impacted by Sulfur Fertilization and Its Interactions With Nitrogen Fertilization. FRONTIERS IN PLANT SCIENCE 2019; 10:458. [PMID: 31057573 PMCID: PMC6477675 DOI: 10.3389/fpls.2019.00458] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2018] [Accepted: 03/26/2019] [Indexed: 05/21/2023]
Abstract
Although the impact of sulfur (S) availability on the seed yield and nutritional quality of seeds has been demonstrated, its impact coupled with nitrogen (N) availability remains poorly studied in oilseed rape. A deeper knowledge of S and N interactions on seed yield components and seed quality could improve S and N fertilization management in a sustainable manner. To address this question, our goals were to determine the effects of nine different S fertilization management strategies (i) in interaction with different levels of N fertilization and (ii) according to the timing of application (by delaying and fractionating the S inputs) on agronomic performances and components of seed yield. The impact of these various managements of S and N fertilizations was also investigated on the seed quality with a focus on the composition of SSPs (mainly represented by napins and cruciferins). Our results highlighted synergetic effects on S and N use efficiencies at optimum rates of S and N inputs and antagonistic effects at excessive rates of one of the two elements. The data indicated that adjustment of S and N fertilization may lead to high seed yield and seed protein quality in a sustainable manner, especially in the context of reductions in N inputs. Delaying S inputs improved the seed protein quality by significantly increasing the relative abundance of napin (a SSP rich in S-containing amino acids) and decreasing the level of a cruciferin at 30 kDa (a SSP with low content of S-amino acids). These observations suggest that fractionated or delayed S fertilizer inputs could provide additional insights into the development of N and S management strategies to maintain or improve seed yield and protein quality. Our results also demonstrated that the S% in seeds and the napin:30 kDa-cruciferin ratio are highly dependent on S/N fertilization in relation to S supply. In addition, we observed a strong relationship between S% in seeds and the abundance of napin as well as the napin:30 kDa-cruciferin ratio, suggesting that S% may be used as a relevant index for the determination of protein quality in seeds in terms of S-containing amino acids.
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Affiliation(s)
- Emilie Poisson
- UMR Ecophysiologie Végétale et Agronomie (EVA), Normandie Université, UNICAEN, INRA, SFR Normandie Végétal (FED4277), Caen, France
| | - Jacques Trouverie
- UMR Ecophysiologie Végétale et Agronomie (EVA), Normandie Université, UNICAEN, INRA, SFR Normandie Végétal (FED4277), Caen, France
| | - S. Brunel-Muguet
- UMR Ecophysiologie Végétale et Agronomie (EVA), Normandie Université, UNICAEN, INRA, SFR Normandie Végétal (FED4277), Caen, France
| | - Yacine Akmouche
- UMR Ecophysiologie Végétale et Agronomie (EVA), Normandie Université, UNICAEN, INRA, SFR Normandie Végétal (FED4277), Caen, France
| | - Célia Pontet
- Terres Inovia, Centre de Recherche INRA de Toulouse, Bâtiment AGIR, Castanet-Tolosan, France
| | - Xavier Pinochet
- Terres Inovia, Direction Etudes et Recherches, Campus INRA Agro ParisTech, Thiverval Grignon, France
| | - Jean-Christophe Avice
- UMR Ecophysiologie Végétale et Agronomie (EVA), Normandie Université, UNICAEN, INRA, SFR Normandie Végétal (FED4277), Caen, France
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Liu D, Han C, Deng X, Liu Y, Liu N, Yan Y. Integrated physiological and proteomic analysis of embryo and endosperm reveals central salt stress response proteins during seed germination of winter wheat cultivar Zhengmai 366. BMC PLANT BIOLOGY 2019; 19:29. [PMID: 30658564 PMCID: PMC6339335 DOI: 10.1186/s12870-019-1643-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/26/2018] [Accepted: 01/09/2019] [Indexed: 06/09/2023]
Abstract
BACKGROUND Salinity is a major abiotic stressor that affects seed germination, plant growth, and crop production. Seed germination represents the beginning of plant growth and is closely linked with subsequent crop development and ultimate yield formation. This study attempted to extend findings regarding the potential proteomic dynamics during wheat seed germination under salt stress and to explore the mechanism of crop salt response. RESULTS Salt stress significantly affected seed physiological activities during the germination process, resulting in significant decreases in phytohormone and α-amylase activity and significant increases in soluble sugar, starch, and ADP glucose pyrophosphorylase activity. A comparative proteomics approach was applied to analyze the dynamic proteome changes of embryo and endosperm during seed germination in Chinese winter wheat cultivar Zhengmai 366 under salt stress. Two-dimensional electrophoresis identified 92 and 61 differentially accumulated proteins (DAPs) in response to salt stress in embryo and endosperm, respectively. Both organs contained a high proportion of DAPs involved in stress defense, energy metabolism, and protein/amino acid metabolism. The endosperm had more DAPs related to storage proteins and starch metabolism than the embryo, and 2% of DAPs participating in lipid and sterol metabolism were specifically detected in the embryo. CONCLUSIONS Seed physiological activities were significantly affected during the germination process when subjected to salt stress. The DAPs involved in stress defense and energy metabolism were upregulated whereas those related to reserve substance degradation and protein/amino acid metabolism were significantly downregulated, leading to delayed seed germination under salt stress. Our proteomic results revealed synergistic regulation of the response to salt stress during seed germination.
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Affiliation(s)
- Dongmiao Liu
- Laboratory of Molecular Genetics and Proteomics, College of Life Science, Capital Normal University, Beijing, 100048 China
| | - Caixia Han
- Laboratory of Molecular Genetics and Proteomics, College of Life Science, Capital Normal University, Beijing, 100048 China
| | - Xiong Deng
- Laboratory of Molecular Genetics and Proteomics, College of Life Science, Capital Normal University, Beijing, 100048 China
| | - Yue Liu
- Laboratory of Molecular Genetics and Proteomics, College of Life Science, Capital Normal University, Beijing, 100048 China
| | - Nannan Liu
- Laboratory of Molecular Genetics and Proteomics, College of Life Science, Capital Normal University, Beijing, 100048 China
| | - Yueming Yan
- Laboratory of Molecular Genetics and Proteomics, College of Life Science, Capital Normal University, Beijing, 100048 China
- Hubei Collaborative Innovation Center for Grain Industry (HCICGI), Yangtze University, Jingzhou, 434025 China
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Gu J, Hou D, Li Y, Chao H, Zhang K, Wang H, Xiang J, Raboanatahiry N, Wang B, Li M. Integration of proteomic and genomic approaches to dissect seed germination vigor in Brassica napus seeds differing in oil content. BMC PLANT BIOLOGY 2019; 19:21. [PMID: 30634904 PMCID: PMC6329107 DOI: 10.1186/s12870-018-1624-7] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2018] [Accepted: 12/28/2018] [Indexed: 05/23/2023]
Abstract
BACKGROUND Rapeseed (Brassica napus, B. napus) is an important oil seed crop in the world. Previous studies showed that seed germination vigor might be correlated with seed oil content in B. napus, but the regulation mechanism for seed germination has not yet been explained clearly. Dissecting the regulation mechanism of seed germination and germination vigor is necessary. RESULTS Here, proteomic and genomic approaches were used to analyze the germination process in B. napus seeds with different oil content. The identification of 165 differentially expressed proteins (DEPs) in the germinating seeds of B. napus with high and low oil content was accomplished by two-dimensional fluorescence difference in gel electrophoresis (2D-DIGE). The comparative proteomic results revealed that seeds with high oil content had higher metabolic activity, especially for sulfur amino acid metabolism. Thirty-one unique genes were shown to be significantly changed during germination between the seeds with high and low oil content, and thirteen of these genes were located within the confidence interval of germination-related quantitative trait locus (QTLs), which might play an important role in regulating seed germination vigor. CONCLUSIONS The present results are of importance for the understanding of the regulation mechanism for seed germination vigor in B. napus.
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Affiliation(s)
- Jianwei Gu
- Department of Biotechnology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, China
- Hubei Institute of New Socialist Countryside Development, Hubei Engineering University, Xiaogan, China
| | - Dalin Hou
- Department of Biotechnology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, China
- Hubei Key Laboratory of Economic Forest Germplasm Improvement and Resources Comprehensive Utilization, Hubei Collaborative Innovation Center for the Characteristic Resources Exploitation of Dabie Mountains, Huanggang Normal University, Huanggang, China
| | - Yonghong Li
- Hybrid Rapeseed Research Center of Shaanxi Province, Shaanxi Rapeseed Branch of National Centre for Oil Crops Genetic Improvement, Yangling, China
| | - Hongbo Chao
- Department of Biotechnology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, China
| | - Kai Zhang
- Department of Biotechnology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, China
| | - Hao Wang
- Hybrid Rapeseed Research Center of Shaanxi Province, Shaanxi Rapeseed Branch of National Centre for Oil Crops Genetic Improvement, Yangling, China
| | - Jun Xiang
- Hubei Key Laboratory of Economic Forest Germplasm Improvement and Resources Comprehensive Utilization, Hubei Collaborative Innovation Center for the Characteristic Resources Exploitation of Dabie Mountains, Huanggang Normal University, Huanggang, China
| | - Nadia Raboanatahiry
- Department of Biotechnology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, China
| | - Baoshan Wang
- College of Life Science, Shandong Normal University, Jinan, China
| | - Maoteng Li
- Department of Biotechnology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, China
- Hubei Key Laboratory of Economic Forest Germplasm Improvement and Resources Comprehensive Utilization, Hubei Collaborative Innovation Center for the Characteristic Resources Exploitation of Dabie Mountains, Huanggang Normal University, Huanggang, China
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Wang Y, Cui Y, Hu G, Wang X, Chen H, Shi Q, Xiang J, Zhang Y, Zhu D, Zhang Y. Reduced bioactive gibberellin content in rice seeds under low temperature leads to decreased sugar consumption and low seed germination rates. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2018; 133:1-10. [PMID: 30368115 DOI: 10.1016/j.plaphy.2018.10.020] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2018] [Revised: 10/01/2018] [Accepted: 10/17/2018] [Indexed: 06/08/2023]
Abstract
GA is important for rice seed germination, and seed embryo growth relies on sugar supplementation via starch hydrolysis in the endosperm. Low temperature reduces the seed germination rates of rice; however, the mechanism of GA metabolism and its impact on sugar utilization of germinating seeds under low temperature conditions remain poorly understood. In this study, low-temperature (15 °C) treatment delayed rice (Oryza sativa L.) seed germination, promoted GA deactivation, inhibited GA signal transduction, and increased ABA synthesis in the seed compared with normal treatment (30 °C). Under low temperature conditions, the soluble sugar content in endosperm was reduced along with depression of the specific activity levels of α-amylase (EC 3.2.1.1) and β-amylase (EC 3.2.1.2), but the soluble sugar content was increased in the embryo compared with the control treatment. Low temperature treatment promoted sugar transportation from endosperm to embryo and reduced the activity levels of enzymes involved in glycolysis and the tricarboxylic acid cycle, which participated in sugar consumption. Exogenous GA3 application (10 μM) prompted GA signal transduction and inhibited ABA synthesis, while enhancing starch hydrolysis and sugar consumption to boost rice seed germination under low temperature conditions. In conclusion, a deficiency of bioactive GAs in rice seeds exposed to low temperature led to a decrement in starch hydrolysis and sugar consumption, thus inhibit seed germination.
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Affiliation(s)
- Yaliang Wang
- China National Rice Research Institute, State Key Laboratory of Rice Biology, Hangzhou, 310006, China; College of Agronomy, Jiangxi Agricultural University, Nanchang, 330045, China
| | - Yongtao Cui
- China National Rice Research Institute, State Key Laboratory of Rice Biology, Hangzhou, 310006, China
| | - Guohui Hu
- China National Rice Research Institute, State Key Laboratory of Rice Biology, Hangzhou, 310006, China
| | - Xiaodan Wang
- China National Rice Research Institute, State Key Laboratory of Rice Biology, Hangzhou, 310006, China
| | - Huizhe Chen
- China National Rice Research Institute, State Key Laboratory of Rice Biology, Hangzhou, 310006, China
| | - Qinghua Shi
- College of Agronomy, Jiangxi Agricultural University, Nanchang, 330045, China
| | - Jing Xiang
- China National Rice Research Institute, State Key Laboratory of Rice Biology, Hangzhou, 310006, China
| | - Yikai Zhang
- China National Rice Research Institute, State Key Laboratory of Rice Biology, Hangzhou, 310006, China
| | - Defeng Zhu
- China National Rice Research Institute, State Key Laboratory of Rice Biology, Hangzhou, 310006, China.
| | - Yuping Zhang
- China National Rice Research Institute, State Key Laboratory of Rice Biology, Hangzhou, 310006, China.
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Besnard J, Zhao C, Avice JC, Vitha S, Hyodo A, Pilot G, Okumoto S. Arabidopsis UMAMIT24 and 25 are amino acid exporters involved in seed loading. JOURNAL OF EXPERIMENTAL BOTANY 2018; 69:5221-5232. [PMID: 30312461 PMCID: PMC6184519 DOI: 10.1093/jxb/ery302] [Citation(s) in RCA: 33] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2017] [Accepted: 08/14/2018] [Indexed: 05/17/2023]
Abstract
Phloem-derived amino acids are the major source of nitrogen supplied to developing seeds. Amino acid transfer from the maternal to the filial tissue requires at least one cellular export step from the maternal tissue prior to the import into the symplasmically isolated embryo. Some members of UMAMIT (usually multiple acids move in an out transporter) family (UMAMIT11, 14, 18, 28, and 29) have previously been implicated in this process. Here we show that additional members of the UMAMIT family, UMAMIT24 and UMAMIT25, also function in amino acid transfer in developing seeds. Using a recently published yeast-based assay allowing detection of amino acid secretion, we showed that UMAMIT24 and UMAMIT25 promote export of a broad range of amino acids in yeast. In plants, UMAMIT24 and UMAMIT25 are expressed in distinct tissues within developing seeds; UMAMIT24 is mainly expressed in the chalazal seed coat and localized on the tonoplast, whereas the plasma membrane-localized UMAMIT25 is expressed in endosperm cells. Seed amino acid contents of umamit24 and umamit25 knockout lines were both decreased during embryogenesis compared with the wild type, but recovered in the mature seeds without any deleterious effect on yield. The results suggest that UMAMIT24 and 25 play different roles in amino acid translocation from the maternal to filial tissue; UMAMIT24 could have a role in temporary storage of amino acids in the chalaza, while UMAMIT25 would mediate amino acid export from the endosperm, the last step before amino acids are taken up by the developing embryo.
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Affiliation(s)
- Julien Besnard
- Department of Soil and Crop, Texas A&M, College Station, TX, USA
| | - Chengsong Zhao
- School of Plant and Environmental Sciences, Virginia Tech, Blacksburg, VA, USA
| | - Jean-Christophe Avice
- UMR INRA - UCBN 950 EVA, UFR des Sciences, Département de Biologie, Université de Caen Normandie, Esplanade de la Paix, Caen cedex, France
| | - Stanislav Vitha
- Microscopy and Imaging Center, Texas A&M, College Station, TX, USA
| | - Ayumi Hyodo
- Stable Isotopes for Biosphere Science Laboratory, Texas A&M, College Station, TX, USA
| | - Guillaume Pilot
- School of Plant and Environmental Sciences, Virginia Tech, Blacksburg, VA, USA
| | - Sakiko Okumoto
- Department of Soil and Crop, Texas A&M, College Station, TX, USA
- Correspondence: or
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33
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Mouzo D, Bernal J, López-Pedrouso M, Franco D, Zapata C. Advances in the Biology of Seed and Vegetative Storage Proteins Based on Two-Dimensional Electrophoresis Coupled to Mass Spectrometry. Molecules 2018; 23:E2462. [PMID: 30261600 PMCID: PMC6222612 DOI: 10.3390/molecules23102462] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2018] [Revised: 09/18/2018] [Accepted: 09/21/2018] [Indexed: 12/24/2022] Open
Abstract
Seed storage proteins play a fundamental role in plant reproduction and human nutrition. They accumulate during seed development as reserve material for germination and seedling growth and are a major source of dietary protein for human consumption. Storage proteins encompass multiple isoforms encoded by multi-gene families that undergo abundant glycosylations and phosphorylations. Two-dimensional electrophoresis (2-DE) is a proteomic tool especially suitable for the characterization of storage proteins because of their peculiar characteristics. In particular, storage proteins are soluble multimeric proteins highly represented in the seed proteome that contain polypeptides of molecular mass between 10 and 130 kDa. In addition, high-resolution profiles can be achieved by applying targeted 2-DE protocols. 2-DE coupled with mass spectrometry (MS) has traditionally been the methodology of choice in numerous studies on the biology of storage proteins in a wide diversity of plants. 2-DE-based reference maps have decisively contributed to the current state of our knowledge about storage proteins in multiple key aspects, including identification of isoforms and quantification of their relative abundance, identification of phosphorylated isoforms and assessment of their phosphorylation status, and dynamic changes of isoforms during seed development and germination both qualitatively and quantitatively. These advances have translated into relevant information about meaningful traits in seed breeding such as protein quality, longevity, gluten and allergen content, stress response and antifungal, antibacterial, and insect susceptibility. This review addresses progress on the biology of storage proteins and application areas in seed breeding using 2-DE-based maps.
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Affiliation(s)
- Daniel Mouzo
- Department of Zoology, Genetics and Physical Anthropology, University of Santiago de Compostela, 15782 Santiago de Compostela, Spain.
| | - Javier Bernal
- Department of Zoology, Genetics and Physical Anthropology, University of Santiago de Compostela, 15782 Santiago de Compostela, Spain.
| | - María López-Pedrouso
- Department of Zoology, Genetics and Physical Anthropology, University of Santiago de Compostela, 15782 Santiago de Compostela, Spain.
| | - Daniel Franco
- Meat Technology Center of Galicia, 32900 San Cibrao das Viñas, Ourense, Spain.
| | - Carlos Zapata
- Department of Zoology, Genetics and Physical Anthropology, University of Santiago de Compostela, 15782 Santiago de Compostela, Spain.
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Cheng L, Wang Y, Liu Y, Zhang Q, Gao H, Zhang F. Comparative proteomics illustrates the molecular mechanism of potato (Solanum tuberosum L.) tuberization inhibited by exogenous gibberellins in vitro. PHYSIOLOGIA PLANTARUM 2018; 163:103-123. [PMID: 29135031 DOI: 10.1111/ppl.12670] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2017] [Revised: 10/31/2017] [Accepted: 11/08/2017] [Indexed: 05/24/2023]
Abstract
Among the multiple environmental signals and hormonal factors regulating potato tuberization, gibberellins (GAs) are important components of the signaling pathways in these processes. To understand the GAs-signaling response mechanism of potato tuberization, a comparative proteomics approach was applied to analyze proteome change of potato tuberization in vitro subjected to a range of exogenous GA3 treatments (0, 0.01, 0.1 and 1.0 μM) using two-dimensional gel electrophoresis. Quantitative image analyses showed that a total of 37 protein spots have their abundance significantly altered more than 2-fold. Among these proteins, 13 proteins were up-regulated, 13 proteins were down-regulated, one protein was absent and 10 proteins were induced after treatment by exogenous GA3 . The MALDI-TOF/TOF MS analyses led to the identification of differentially abundant proteins that are mainly involved in bioenergy and metabolism, storage, signaling, cell defense and rescue, transcription, chaperones, transport. Furthermore, the comparative analysis of GA3 -responsive proteome allowed for general elucidation of underlying molecular mechanisms of potato tuberization inhibited by exogenous GA3 . Most of these cellular processes were not conducive to the transition from stolon elongation to tuber formation, including a blockage of starch and storage protein accumulation, the accelerated carbohydrate catabolism, a blockage of JA biosynthesis but an elevated endogenous GAs level, the amplification of GA3 signal transduction by other signaling pathways, and the regulation of cellular RNA metabolism for controlling tuberization. Our results firstly integrated physiology and proteome data to provide new insights into GA3 -signaling response mechanisms of potato tuberization in vitro.
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Affiliation(s)
- Lixiang Cheng
- College of Agronomy, Gansu Provincial Key Laboratory of Aridland Crop Science, Gansu Key Laboratory of Crop Improvement & Germplasm Enhancement, Gansu Agricultural University, Lanzhou, China
| | - Yuping Wang
- College of Agronomy, Gansu Provincial Key Laboratory of Aridland Crop Science, Gansu Key Laboratory of Crop Improvement & Germplasm Enhancement, Gansu Agricultural University, Lanzhou, China
| | - Yueshan Liu
- College of Agronomy, Gansu Provincial Key Laboratory of Aridland Crop Science, Gansu Key Laboratory of Crop Improvement & Germplasm Enhancement, Gansu Agricultural University, Lanzhou, China
| | - Qingquan Zhang
- College of Agronomy, Gansu Provincial Key Laboratory of Aridland Crop Science, Gansu Key Laboratory of Crop Improvement & Germplasm Enhancement, Gansu Agricultural University, Lanzhou, China
| | - Huihui Gao
- College of Agronomy, Gansu Provincial Key Laboratory of Aridland Crop Science, Gansu Key Laboratory of Crop Improvement & Germplasm Enhancement, Gansu Agricultural University, Lanzhou, China
| | - Feng Zhang
- College of Agronomy, Gansu Provincial Key Laboratory of Aridland Crop Science, Gansu Key Laboratory of Crop Improvement & Germplasm Enhancement, Gansu Agricultural University, Lanzhou, China
- College of Life Science and Technology, Gansu Agricultural University, Lanzhou, China
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35
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Ren XX, Xue JQ, Wang SL, Xue YQ, Zhang P, Jiang HD, Zhang XX. Proteomic analysis of tree peony (Paeonia ostii 'Feng Dan') seed germination affected by low temperature. JOURNAL OF PLANT PHYSIOLOGY 2018; 224-225:56-67. [PMID: 29597068 DOI: 10.1016/j.jplph.2017.12.016] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2017] [Revised: 12/22/2017] [Accepted: 12/22/2017] [Indexed: 06/08/2023]
Abstract
Seed germination is a critical process that is influenced by various factors. In the present study, the effect of low temperature (4 °C) on tree peony seed germination was investigated. Compared to seeds maintained at 25 °C, germination was inhibited when seeds were kept at 4 °C. Furthermore, low-temperature exposure of seeds resulted in a delay in water uptake, starch degradation, and soluble sugar consumption and a subsequent increase in soluble protein levels. Two-dimensional gel electrophoresis (2-DE) proteomic analysis identified 100 protein spots. Comparative analysis indicated that low-temperature exposure apparently mainly affected glycolysis and the tricarboxylic acid (TCA) cycle, while also significantly affecting proteometabolism-related factors. Moreover, low-temperature exposure led to the induction of abscisic acid, whereas the gibberellin pathway was not affected. Further comparison of the two temperature conditions showed that low-temperature exposure delays carbohydrate metabolism, adenosine triphosphate (ATP) production, respiration, and proteolysis and increases defense response factors. To further examine the obtained proteomic findings, four genes were evaluated by quantitative polymerase chain reaction (qPCR). The obtained transcriptional results for the GAPC gene coincided with the translational results, thus further suggesting that the delay in glycolysis may play a key role in low-temperature-induced inhibition of seed germination. However, the other three genes examined, which included FPP synthase, PCNT115, and endochitinase, showed non-correlative transcriptional and translational profiles. Our results suggest that the exposure of tree peony seeds to low temperature results in a delay in the degradation of starch and other metabolites, which in turn affects glycolysis and some other processes, thereby ultimately inhibiting seed germination.
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Affiliation(s)
- Xiu-Xia Ren
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops, Ministry of Agriculture and Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Jing-Qi Xue
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops, Ministry of Agriculture and Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Shun-Li Wang
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops, Ministry of Agriculture and Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Yu-Qian Xue
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops, Ministry of Agriculture and Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Ping Zhang
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops, Ministry of Agriculture and Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Hai-Dong Jiang
- College of Agriculture, Nanjing Agricultural University, Nanjing, China.
| | - Xiu-Xin Zhang
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops, Ministry of Agriculture and Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China.
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Chang E, Deng N, Zhang J, Liu J, Chen L, Zhao X, Abbas M, Jiang Z, Shi S. Proteome-Level Analysis of Metabolism- and Stress-Related Proteins during Seed Dormancy and Germination in Gnetum parvifolium. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2018; 66:3019-3029. [PMID: 29490456 DOI: 10.1021/acs.jafc.7b05001] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Gnetum parvifolium is a rich source of materials for traditional medicines, food, and oil, but little is known about the mechanism underlying its seed dormancy and germination. In this study, we analyzed the proteome-level changes in its seeds during germination using isobaric tags for relative and absolute quantitation. In total, 1,040 differentially expressed proteins were identified, and cluster analysis revealed the distinct time points during which signal transduction and oxidation-reduction activity changed. Gene Ontology analysis showed that "carbohydrate metabolic process" and "response to oxidative stress" were the main enriched terms. Proteins associated with starch degradation and antioxidant enzymes were important for dormancy-release, while proteins associated with energy metabolism and protein synthesis were up-regulated during germination. Moreover, protein-interaction networks were mainly associated with heat-shock proteins. Furthermore, in accord with changes in the energy metabolism- and antioxidant-related proteins, indole-3-acetic acid, Peroxidase, and soluble sugar content increased, and the starch content decreased in almost all six stages of dormancy and germination analyzed (S1-S6). The activity of superoxide dismutase, abscisic acid, and malondialdehyde content increased in the dormancy stages (S1-S3) and then decreased in the germination stages (S4-S6). Our results provide new insights into G. parvifolium seed dormancy and germination at the proteome and physiological levels, with implications for improving seed propagation.
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Affiliation(s)
- Ermei Chang
- State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry , Chinese Academy of Forestry , No. 1 Dongxiaofu, Xiangshan Road , Haidian, Beijing 100091 , China
| | - Nan Deng
- Institute of Ecology , Hunan Academy of Forestry , Changsha , Hunan 410004 , China
| | - Jin Zhang
- State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry , Chinese Academy of Forestry , No. 1 Dongxiaofu, Xiangshan Road , Haidian, Beijing 100091 , China
| | - Jianfeng Liu
- State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry , Chinese Academy of Forestry , No. 1 Dongxiaofu, Xiangshan Road , Haidian, Beijing 100091 , China
| | - Lanzhen Chen
- Institute of Apicultural Research , Chinese Academy of Agricultural Sciences , Beijing 100093 , China
- Risk Assessment Laboratory for Bee Products , Quality and Safety of Ministry of Agriculture , Beijing 100093 , China
| | - Xiulian Zhao
- State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry , Chinese Academy of Forestry , No. 1 Dongxiaofu, Xiangshan Road , Haidian, Beijing 100091 , China
| | - M Abbas
- State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry , Chinese Academy of Forestry , No. 1 Dongxiaofu, Xiangshan Road , Haidian, Beijing 100091 , China
- National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Technology , Beijing Forestry University , Beijing 100083 , China
| | - Zeping Jiang
- State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry , Chinese Academy of Forestry , No. 1 Dongxiaofu, Xiangshan Road , Haidian, Beijing 100091 , China
| | - Shengqing Shi
- State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry , Chinese Academy of Forestry , No. 1 Dongxiaofu, Xiangshan Road , Haidian, Beijing 100091 , China
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37
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Liu L, Xia W, Li H, Zeng H, Wei B, Han S, Yin C. Salinity Inhibits Rice Seed Germination by Reducing α-Amylase Activity via Decreased Bioactive Gibberellin Content. FRONTIERS IN PLANT SCIENCE 2018; 9:275. [PMID: 29556245 PMCID: PMC5845124 DOI: 10.3389/fpls.2018.00275] [Citation(s) in RCA: 53] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/23/2017] [Accepted: 02/16/2018] [Indexed: 05/20/2023]
Abstract
Seed germination plays important roles in the establishment of seedlings and their subsequent growth; however, seed germination is inhibited by salinity, and the inhibitory mechanism remains elusive. Our results indicate that NaCl treatment inhibits rice seed germination by decreasing the contents of bioactive gibberellins (GAs), such as GA1 and GA4, and that this inhibition can be rescued by exogenous bioactive GA application. To explore the mechanism of bioactive GA deficiency, the effect of NaCl on GA metabolic gene expression was investigated, revealing that expression of both GA biosynthetic genes and GA-inactivated genes was up-regulated by NaCl treatment. These results suggest that NaCl-induced bioactive GA deficiency is caused by up-regulated expression of GA-inactivated genes, and the up-regulated expression of GA biosynthetic genes might be a consequence of negative feedback regulation of the bioactive GA deficiency. Moreover, we provide evidence that NaCl-induced bioactive GA deficiency inhibits rice seed germination by decreasing α-amylase activity via down-regulation of α-amylase gene expression. Additionally, exogenous bioactive GA rescues NaCl-inhibited seed germination by enhancing α-amylase activity. Thus, NaCl treatment reduces bioactive GA content through promotion of bioactive GA inactivation, which in turn inhibits rice seed germination by decreasing α-amylase activity via down-regulation of α-amylase gene expression.
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Affiliation(s)
- Li Liu
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Weili Xia
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Haixia Li
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Hanlai Zeng
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Benhui Wei
- Cash Crops Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, China
| | - Suoyi Han
- Industrial Crops Research Institute, Henan Academy of Agricultural Sciences, Zhengzhou, China
| | - Changxi Yin
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
- *Correspondence: Changxi Yin,
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38
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Zaynab M, Kanwal S, Furqan M, Islam W, Noman A, Ali GM, Rehman N, Zafar S, Sughra K, Jahanzab M. Proteomic approach to address low seed germination in Cyclobalnopsis gilva. Biotechnol Lett 2017; 39:1441-1451. [DOI: 10.1007/s10529-017-2393-3] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2017] [Accepted: 07/13/2017] [Indexed: 10/19/2022]
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39
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Takáč T, Šamajová O, Pechan T, Luptovčiak I, Šamaj J. Feedback Microtubule Control and Microtubule-Actin Cross-talk in Arabidopsis Revealed by Integrative Proteomic and Cell Biology Analysis of KATANIN 1 Mutants. Mol Cell Proteomics 2017; 16:1591-1609. [PMID: 28706004 DOI: 10.1074/mcp.m117.068015] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2017] [Revised: 06/06/2017] [Indexed: 12/20/2022] Open
Abstract
Microtubule organization and dynamics are critical for key developmental processes such as cell division, elongation, and morphogenesis. Microtubule severing is an essential regulator of microtubules and is exclusively executed by KATANIN 1 in Arabidopsis In this study, we comparatively studied the proteome-wide effects in two KATANIN 1 mutants. Thus, shotgun proteomic analysis of roots and aerial parts of single nucleotide mutant fra2 and T-DNA insertion mutant ktn1-2 was carried out. We have detected 42 proteins differentially abundant in both fra2 and ktn1-2 KATANIN 1 dysfunction altered the abundance of proteins involved in development, metabolism, and stress responses. The differential regulation of tubulins and microtubule-destabilizing protein MDP25 implied a feedback microtubule control in KATANIN 1 mutants. Furthermore, deregulation of profilin 1, actin-depolymerizing factor 3, and actin 7 was observed. These findings were confirmed by immunoblotting analysis of actin and by microscopic observation of actin filaments using fluorescently labeled phalloidin. Results obtained by quantitative RT-PCR analysis revealed that changed protein abundances were not a consequence of altered expression levels of corresponding genes in the mutants. In conclusion, we show that abundances of several cytoskeletal proteins as well as organization of microtubules and the actin cytoskeleton are amended in accordance with defective microtubule severing.
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Affiliation(s)
- Tomáš Takáč
- From the ‡Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University, Šlechtitelů 27, 783 71 Olomouc, Czech Republic
| | - Olga Šamajová
- From the ‡Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University, Šlechtitelů 27, 783 71 Olomouc, Czech Republic
| | - Tibor Pechan
- §Institute for Genomics, Biocomputing and Biotechnology, Mississippi Agricultural and Forestry Experiment Station, Mississippi State University, Starkville, Mississippi 39759
| | - Ivan Luptovčiak
- From the ‡Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University, Šlechtitelů 27, 783 71 Olomouc, Czech Republic
| | - Jozef Šamaj
- From the ‡Centre of the Region Haná for Biotechnological and Agricultural Research, Faculty of Science, Palacký University, Šlechtitelů 27, 783 71 Olomouc, Czech Republic;
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40
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Liu Y, Wu J, Sun N, Tu C, Shi X, Cheng H, Liu S, Li S, Wang Y, Zheng Y, Uversky VN. Intrinsically Disordered Proteins as Important Players during Desiccation Stress of Soybean Radicles. J Proteome Res 2017; 16:2393-2409. [PMID: 28525284 DOI: 10.1021/acs.jproteome.6b01045] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
Intrinsically disordered proteins (IDPs) play a variety of important physiological roles in all living organisms. However, there is no comprehensive analysis of the abundance of IDPs associated with environmental stress in plants. Here, we show that a set of heat-stable proteins (i.e., proteins that do not denature after boiling at 100 °C for 10 min) was present in R0mm and R15mm radicles (i.e., before radicle emergence and 15 mm long radicles) of soybean (Glycine max) seeds. This set of 795 iTRAQ-quantified heat-stable proteins contained a high proportion of wholly or highly disordered proteins (15%), which was significantly higher than that estimated for the whole soybean proteome containing 55,787 proteins (9%). The heat-stable proteome of soybean radicles that contain many IDPs could protect lactate dehydrogenase (LDH) during freeze-thaw cycles. Comparison of the 795 heat-stable proteins in the R0mm and R15mm soybean radicles revealed that many of these proteins changed abundance during seedling growth with 170 and 89 proteins being more abundant in R0mm and R15mm, respectively. KEGG analysis identified 18 proteins from the cysteine and methionine metabolism pathways and nine proteins from the phenylpropanoid biosynthesis pathway. As an important type of IDP related to stress, 30 late embryogenesis abundant proteins were also found. Ten selected proteins with high levels of predicted intrinsic disorder were able to efficiently protect LDH from the freeze-thaw-induced inactivation, but the protective ability was not correlated with the disorder content of these proteins. These observations suggest that protection of the enzymes and other proteins in a stressed cell can be one of the biological functions of plant IDPs.
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Affiliation(s)
- Yun Liu
- Guangdong Provincial Key Laboratory for Plant Epigenetics, Shenzhen Key Laboratory of Microbial Genetic Engineering, College of Life Sciences and Oceanography, Shenzhen University , Nanhai Ave 3688, Shenzhen, Guangdong 518060, China
| | - Jiahui Wu
- Guangdong Provincial Key Laboratory for Plant Epigenetics, Shenzhen Key Laboratory of Microbial Genetic Engineering, College of Life Sciences and Oceanography, Shenzhen University , Nanhai Ave 3688, Shenzhen, Guangdong 518060, China
| | - Nan Sun
- Guangdong Provincial Key Laboratory for Plant Epigenetics, Shenzhen Key Laboratory of Microbial Genetic Engineering, College of Life Sciences and Oceanography, Shenzhen University , Nanhai Ave 3688, Shenzhen, Guangdong 518060, China
| | - Chengjian Tu
- Department of Pharmaceutical Sciences, State University of New York at Buffalo , 285 Kapoor Hall, Buffalo, New York14260, United States
| | - Xiaoying Shi
- Guangdong Provincial Key Laboratory for Plant Epigenetics, Shenzhen Key Laboratory of Microbial Genetic Engineering, College of Life Sciences and Oceanography, Shenzhen University , Nanhai Ave 3688, Shenzhen, Guangdong 518060, China
| | - Hua Cheng
- Guangdong Provincial Key Laboratory for Plant Epigenetics, Shenzhen Key Laboratory of Microbial Genetic Engineering, College of Life Sciences and Oceanography, Shenzhen University , Nanhai Ave 3688, Shenzhen, Guangdong 518060, China
| | - Simu Liu
- Guangdong Provincial Key Laboratory for Plant Epigenetics, Shenzhen Key Laboratory of Microbial Genetic Engineering, College of Life Sciences and Oceanography, Shenzhen University , Nanhai Ave 3688, Shenzhen, Guangdong 518060, China
| | - Shuiming Li
- Guangdong Provincial Key Laboratory for Plant Epigenetics, Shenzhen Key Laboratory of Microbial Genetic Engineering, College of Life Sciences and Oceanography, Shenzhen University , Nanhai Ave 3688, Shenzhen, Guangdong 518060, China
| | - Yong Wang
- Guangdong Provincial Key Laboratory for Plant Epigenetics, Shenzhen Key Laboratory of Microbial Genetic Engineering, College of Life Sciences and Oceanography, Shenzhen University , Nanhai Ave 3688, Shenzhen, Guangdong 518060, China
| | - Yizhi Zheng
- Guangdong Provincial Key Laboratory for Plant Epigenetics, Shenzhen Key Laboratory of Microbial Genetic Engineering, College of Life Sciences and Oceanography, Shenzhen University , Nanhai Ave 3688, Shenzhen, Guangdong 518060, China
| | - Vladimir N Uversky
- Department of Molecular Medicine and USF Health Byrd Alzheimer's Research Institute, Morsani College of Medicine, University of South Florida , 12901 Bruce B. Downs Boulevard MDC07, Tampa, Florida 33612, United States
- Laboratory of New Methods in Biology, Institute for Biological Instrumentation of the Russian Academy of Sciences , Institutskaya str., 7, Pushchino, Moscow region 142290, Russia
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41
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Wen D, Xu H, Xie L, He M, Hou H, Zhang C. A loose endosperm structure of wheat seed produced under low nitrogen level promotes early germination by accelerating water uptake. Sci Rep 2017; 7:3116. [PMID: 28596607 PMCID: PMC5465190 DOI: 10.1038/s41598-017-03333-4] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2017] [Accepted: 04/26/2017] [Indexed: 02/01/2023] Open
Abstract
Water uptake is the fundamental requirement for the initiation and completion of seed germination that is a vital phase in the life cycle of seed plants. We found that seeds produced under four nitrogen levels showed significantly different germination speed. The objective of this study was to study the mechanism of rapid seed germination and explore which pathways and genes play critical roles in radicle protrusion. Anatomical data revealed that seed protein content affected endosperm structure of seeds. Moreover, scanning electron microscope maps showed that faster germinated seeds had a looser endosperm structure compared with other seeds. Subsequently, high throughout RNA-seq data were used to compare the transcriptomes of imbibed seeds with different germination speed. Gene ontology (GO) term enrichment analysis revealed that cell wall metabolism related genes significantly up-regulated in faster germinated seeds. In these genes, the top four were chitinase that had about fourfold higher expression in faster germinated seeds. Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis showed that faster germinated seeds had enhanced expression in glutathione metabolism. By combining these results, we propose a model for nitrogen fertilizer affects germination speed of wheat seed, which provide new insights into seed germination.
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Affiliation(s)
- Daxing Wen
- State Key Laboratory of Crop Biology, Agronomy College, Shandong Agricultural University, Tai'an, Shandong Province, 271018, P.R. China
| | - Haicheng Xu
- State Key Laboratory of Crop Biology, Agronomy College, Shandong Agricultural University, Tai'an, Shandong Province, 271018, P.R. China
| | - Liuyong Xie
- State Key Laboratory of Crop Biology, Agronomy College, Shandong Agricultural University, Tai'an, Shandong Province, 271018, P.R. China
| | - Mingrong He
- State Key Laboratory of Crop Biology, Agronomy College, Shandong Agricultural University, Tai'an, Shandong Province, 271018, P.R. China
| | - Hongcun Hou
- State Key Laboratory of Crop Biology, Agronomy College, Shandong Agricultural University, Tai'an, Shandong Province, 271018, P.R. China
| | - Chunqing Zhang
- State Key Laboratory of Crop Biology, Agronomy College, Shandong Agricultural University, Tai'an, Shandong Province, 271018, P.R. China.
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42
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Zhang H, Zhou KX, Wang WQ, Liu SJ, Song SQ. Proteome analysis reveals an energy-dependent central process for Populus×canadensis seed germination. JOURNAL OF PLANT PHYSIOLOGY 2017; 213:134-147. [PMID: 28384531 DOI: 10.1016/j.jplph.2017.03.008] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2017] [Revised: 03/15/2017] [Accepted: 03/15/2017] [Indexed: 06/07/2023]
Abstract
Poplar (Populus×canadensis) seeds rapidly germinated in darkness at 10, 15, and 20°C and reached 50% seed germination after about 22, 4.5, and 3.5h, respectively. Germination of poplar seeds was markedly inhibited by abscisic acid (ABA) at 50μM and cycloheximide (CHX) at 100μM, and these inhibitive roles were temperature-dependent. In the present study, mature poplar seeds were used to investigate the differentially changed proteome of seeds germinating in water, ABA, and CHX. A total of 130 protein spots showed a significant change (1.5-fold increase/decrease, P<0.05) in abundance, and 101 protein spots were successfully identified. Most of the proteins were associated with cell defense and rescue (21%), storage proteins (21%), protein synthesis and destination (20%), metabolism (16%), and energy (14%). The germination of poplar seeds is closely related with the increase in those proteins involved in amino acid and lipid metabolism, the tricarboxylic acid cycle and pentose phosphate pathway, protein synthesis and destination, cell defense and rescue, and degradation of storage proteins. ABA and CHX inhibit the germination of poplar seeds by decreasing the protein abundance associated with protein proteolysis, protein folding, and storage proteins. We conclude that poplar seed germination is an energy-dependent active process, and is accompanied by increasing amino acid activation, protein synthesis and destination, as well as cell defense and rescue, and degradation of storage proteins.
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Affiliation(s)
- Hong Zhang
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
| | - Ke-Xin Zhou
- Nanjing Institute of Environmental Sciences, Ministry of Environmental Protection, Nanjing 210042, China
| | - Wei-Qing Wang
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
| | - Shu-Jun Liu
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
| | - Song-Quan Song
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China.
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43
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Livramento KGD, Borém FM, José AC, Santos AV, Livramento DED, Alves JD, Paiva LV. Proteomic analysis of coffee grains exposed to different drying process. Food Chem 2017; 221:1874-1882. [DOI: 10.1016/j.foodchem.2016.10.069] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2015] [Revised: 10/13/2016] [Accepted: 10/16/2016] [Indexed: 10/20/2022]
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44
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Zhang N, Zhang HJ, Sun QQ, Cao YY, Li X, Zhao B, Wu P, Guo YD. Proteomic analysis reveals a role of melatonin in promoting cucumber seed germination under high salinity by regulating energy production. Sci Rep 2017; 7:503. [PMID: 28356562 PMCID: PMC5428666 DOI: 10.1038/s41598-017-00566-1] [Citation(s) in RCA: 61] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2016] [Accepted: 02/21/2017] [Indexed: 12/13/2022] Open
Abstract
Seed germination is a critical and complex process in the plant life cycle. Although previous studies have found that melatonin can promote seed germination under salt stress, the involvement of melatonin in the regulation of proteomic changes remains poorly understood. In this study, a total of 157 proteins were significantly influenced (ratio ≥ 2 or ≤ -2) by melatonin during seed germination under salt stress using a label-free quantitative technique. Our GO analysis revealed that several pathways were obviously regulated by melatonin, including ribosome biosynthesis, lipid metabolism, carbohydrate metabolism, and storage protein degradation. Not only stress-tolerant proteins but also proteins that produce ATP as part of glycolysis, the citric acid cycle, and the glyoxylate cycle were upregulated by melatonin. Overall, this study provides new evidence that melatonin alleviates the inhibitory effects of NaCl stress on seed germination by promoting energy production. This study is the first to provide insights at the proteomic level into the molecular mechanism of melatonin in response to salt stress in cucumber seeds. This may be helpful to further understand the role of melatonin in cucumber seed germination under stress conditions.
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Affiliation(s)
- Na Zhang
- College of Horticulture, China Agricultural University, Beijing, China
| | - Hai-Jun Zhang
- College of Horticulture, China Agricultural University, Beijing, China
- Beijing Vegetable Research Center, Beijing Academy of Agriculture and Forestry Sciences, National Engineering Research Center for Vegetables, Beijing, China
| | - Qian-Qian Sun
- College of Horticulture, China Agricultural University, Beijing, China
| | - Yun-Yun Cao
- College of Horticulture, China Agricultural University, Beijing, China
| | - Xingsheng Li
- Shandong Provincial Key Laboratory of Cucurbitaceae Vegetable Biological Breeding, Shandong Huasheng Agriculture Co. Ltd, Shandong, China
| | - Bing Zhao
- College of Horticulture, China Agricultural University, Beijing, China.
| | - Ping Wu
- Beijing Vegetable Research Center, Beijing Academy of Agriculture and Forestry Sciences, National Engineering Research Center for Vegetables, Beijing, China.
| | - Yang-Dong Guo
- College of Horticulture, China Agricultural University, Beijing, China.
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45
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Cheng J, Wang L, Zeng P, He Y, Zhou R, Zhang H, Wang Z. Identification of genes involved in rice seed priming in the early imbibition stage. PLANT BIOLOGY (STUTTGART, GERMANY) 2017; 19:61-69. [PMID: 26833720 DOI: 10.1111/plb.12438] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2015] [Accepted: 01/29/2016] [Indexed: 05/23/2023]
Abstract
Phase II of seed imbibition is a critical process during seed priming. To identify genes involved in rice seed priming, the altered proteins between the dry and imbibed (24 h) seeds were compared using a two-dimensional gel electrophoresis system in this study. Ten significantly changed proteins (fold change ≥ twofold; P < 0.01) were successfully identified, which could be categorised as carbohydrate and protein biosynthesis and metabolism-related, signalling-related, storage and stress-related proteins. A meta-analysis indicated that the highest expression of the identified genes was at the milk and dough stages and in the endosperm tissue. Quantitative real-time PCR analysis showed that there was significant variation in gene expression (except FAD-dependent oxidoreductase) in embryos during seed priming (0-48 h). The expression of genes associated with stress appeared at the early imbibition stage, while those associated with carbohydrate metabolism, protein synthesis and signalling increased at the late imbibition stage. Three identified proteins (glucose-1-phosphate adenylyltransferase large subunit, aminotransferase and prolamin precursor) had similar transcript and protein expression patterns in embryos. Based on phenotype and gene expression, the optimal stop time for seed priming is 24 h, when these three genes have relatively low expression, followed by significant induction during imbibition in embryos. These three genes are ideal candidate biomarkers for rice seed priming.
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Affiliation(s)
- J Cheng
- Laboratory of Seed Science and Technology, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, China
| | - L Wang
- Laboratory of Seed Science and Technology, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, China
| | - P Zeng
- Laboratory of Seed Science and Technology, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, China
| | - Y He
- Laboratory of Seed Science and Technology, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, China
| | - R Zhou
- Laboratory of Seed Science and Technology, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, China
| | - H Zhang
- Laboratory of Seed Science and Technology, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, China
| | - Z Wang
- Laboratory of Seed Science and Technology, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, China
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Besnard J, Pratelli R, Zhao C, Sonawala U, Collakova E, Pilot G, Okumoto S. UMAMIT14 is an amino acid exporter involved in phloem unloading in Arabidopsis roots. JOURNAL OF EXPERIMENTAL BOTANY 2016; 67:6385-6397. [PMID: 27856708 PMCID: PMC5181585 DOI: 10.1093/jxb/erw412] [Citation(s) in RCA: 53] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/17/2023]
Abstract
Amino acids are the main form of nitrogen transported between the plant organs. Transport of amino acids across membranes is mediated by specialized proteins: importers, exporters, and facilitators. Unlike amino acid importers, amino acid exporters have not been thoroughly studied, partly due to a lack of high-throughput techniques enabling their isolation. Usually Multiple Acids Move In and out Transporters 14 (UMAMIT14) from Arabidopsis shares sequence similarity to the amino acid facilitator Silique Are Red1 (UMAMIT18), and has been shown to be involved in amino acid transfer to the seeds. We show here that UMAMIT14 is also expressed in root pericycle and phloem cells and mediates export of a broad range of amino acids in yeast. Loss-of-function of UMAMIT14 leads to a reduced shoot-to-root and root-to-medium transfer of amino acids originating from the leaves. These fluxes were further reduced in an umamti14 umamit18 double loss-of-function mutant. This study suggests that UMAMIT14 is involved in phloem unloading of amino acids in roots, and that UMAMIT14 and UMAMIT18 are involved in the radial transport of amino acids in roots, which is essential for maintaining amino acid secretion to the soil.
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Affiliation(s)
- Julien Besnard
- Department of Plant Pathology, Physiology and Weed Science, Virginia Tech, Blacksburg 24061, VA, USA
| | - Réjane Pratelli
- Department of Plant Pathology, Physiology and Weed Science, Virginia Tech, Blacksburg 24061, VA, USA
| | - Chengsong Zhao
- Department of Plant Pathology, Physiology and Weed Science, Virginia Tech, Blacksburg 24061, VA, USA
| | - Unnati Sonawala
- Department of Plant Pathology, Physiology and Weed Science, Virginia Tech, Blacksburg 24061, VA, USA
| | - Eva Collakova
- Department of Plant Pathology, Physiology and Weed Science, Virginia Tech, Blacksburg 24061, VA, USA
| | - Guillaume Pilot
- Department of Plant Pathology, Physiology and Weed Science, Virginia Tech, Blacksburg 24061, VA, USA
| | - Sakiko Okumoto
- Department of Plant Pathology, Physiology and Weed Science, Virginia Tech, Blacksburg 24061, VA, USA
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47
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Liu SJ, Xu HH, Wang WQ, Li N, Wang WP, Lu Z, Møller IM, Song SQ. Identification of embryo proteins associated with seed germination and seedling establishment in germinating rice seeds. JOURNAL OF PLANT PHYSIOLOGY 2016; 196-197:79-92. [PMID: 27085178 DOI: 10.1016/j.jplph.2016.02.021] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2015] [Revised: 02/06/2016] [Accepted: 02/16/2016] [Indexed: 06/05/2023]
Abstract
Seed germination is a critical phase in the plant life cycle, but the mechanism of seed germination is still poorly understood. In the present study, rice (Oryza sativa L. cv. Peiai 64S) seeds were sampled individually when they reached different germination stages, quiescent, germinated sensu stricto, germinated completely and seedling, and were used to study the changes in the embryo proteome. A total of 88 protein spots showed a significant change in abundance during germination in water, and the results showed an activation of metabolic processes. Cell division, cell wall synthesis, and secondary metabolism were activated at late seed germination and during preparation for subsequent seedling establishment. Cycloheximide (CHX) at 70μM inhibited seedling establishment without an apparent negative effect on seed germination, while CHX at 500μM completely blocked seed germination. We used this observation to identify the potentially important proteins involved in seed germination (coleoptile protrusion) and seedling establishment (coleoptile and radicle protrusion). Twenty-six protein spots, mainly associated with sugar/polysaccharide metabolism and energy production, showed a significant difference in abundance during seed germination. Forty-nine protein spots, mainly involved in cell wall biosynthesis, proteolysis as well as cell defense and rescue, were required for seedling establishment. The results help improve our understanding of the key events (proteins) involved in germination and seedling development.
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Affiliation(s)
- Shu-Jun Liu
- Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
| | - Heng-Heng Xu
- Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
| | - Wei-Qing Wang
- Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
| | - Ni Li
- Hunan Hybrid Rice Research Center/State Key Laboratory of Hybrid Rice, Changsha 410125, China
| | - Wei-Ping Wang
- Hunan Hybrid Rice Research Center/State Key Laboratory of Hybrid Rice, Changsha 410125, China
| | - Zhuang Lu
- Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
| | - Ian Max Møller
- Department of Molecular Biology and Genetics, Aarhus University, Flakkebjerg, Slagelse, DK-4200, Denmark
| | - Song-Quan Song
- Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China.
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48
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Xu HH, Liu SJ, Song SH, Wang RX, Wang WQ, Song SQ. Proteomics analysis reveals distinct involvement of embryo and endosperm proteins during seed germination in dormant and non-dormant rice seeds. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2016; 103:219-42. [PMID: 27035683 DOI: 10.1016/j.plaphy.2016.03.007] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2015] [Revised: 03/01/2016] [Accepted: 03/04/2016] [Indexed: 05/09/2023]
Abstract
Seed germination is a complex trait which is influenced by many genetic, endogenous and environmental factors, but the key event(s) associated with seed germination are still poorly understood. In present study, the non-dormant cultivated rice Yannong S and the dormant Dongxiang wild rice seeds were used as experimental materials, we comparatively investigated the water uptake, germination time course, and the differential proteome of the effect of embryo and endosperm on germination of these two types of seeds. A total of 231 and 180 protein spots in embryo and endosperm, respectively, showed a significant change in abundance during germination. We observed that the important proteins associated with seed germination included those involved in metabolism, energy production, protein synthesis and destination, storage protein, cell growth and division, signal transduction, cell defense and rescue. The contribution of embryo and endosperm to seed germination is different. In embryo, the proteins involved in amino acid activation, sucrose cleavage, glycolysis, fermentation and protein synthesis increased; in endosperm, the proteins involved in sucrose cleavage and glycolysis decreased, and those with ATP and CoQ synthesis and proteolysis increased. Our results provide some new knowledge to understand further the mechanism of seed germination.
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Affiliation(s)
- Heng-Heng Xu
- Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
| | - Shu-Jun Liu
- Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
| | - Shun-Hua Song
- Beijing Vegetable Research Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China
| | - Rui-Xia Wang
- College of Life Science, Linyi University, Linyi 276005, China
| | - Wei-Qing Wang
- Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
| | - Song-Quan Song
- Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China.
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49
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Pawłowski TA, Staszak AM. Analysis of the embryo proteome of sycamore (Acer pseudoplatanus L.) seeds reveals a distinct class of proteins regulating dormancy release. JOURNAL OF PLANT PHYSIOLOGY 2016; 195:9-22. [PMID: 26970688 DOI: 10.1016/j.jplph.2016.02.017] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/26/2015] [Revised: 02/01/2016] [Accepted: 02/03/2016] [Indexed: 06/05/2023]
Abstract
Acer pseudoplatanus seeds are characterized by a deep physiological embryo dormancy that requires a few weeks of cold stratification in order to promote germination. Understanding the function of proteins and their related metabolic pathways, in conjunction with the plant hormones implicated in the breaking of seed dormancy, would expand our knowledge pertaining to this process. In this study, a proteomic approach was used to analyze the changes occurring in seeds in response to cold stratification, which leads to dormancy release. In addition, the involvement of abscisic (ABA) and gibberellic acids (GA) was also examined. Fifty-three proteins showing significant changes were identified by mass spectrometry. An effect of ABA on protein variation was observed at the beginning of stratification, while the influence of GA on protein abundance was observed during the middle phase of stratification. The majority of proteins associated with dormancy breaking in the presence of only water, and also ABA or GA, were classified as being involved in metabolism and genetic information processing. For metabolic-related proteins, the effect of ABA on protein abundance was stimulatory for half of the proteins and inhibitory for half of the proteins. On the other hand, the effect on genetic information processing related proteins was stimulatory. GA was found to upregulate both metabolic-related and genetic information processing-related proteins. While seed dormancy breaking depends on proteins involved in a variety of processes, proteins associated with methionine metabolism (adenosine kinase, methionine synthase) and glycine-rich RNA binding proteins appear to be of particular importance.
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50
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Kashiwakura YI, Kobayashi D, Jikumaru Y, Takebayashi Y, Nambara E, Seo M, Kamiya Y, Kushiro T, Kawakami N. Highly Sprouting-Tolerant Wheat Grain Exhibits Extreme Dormancy and Cold Imbibition-Resistant Accumulation of Abscisic Acid. PLANT & CELL PHYSIOLOGY 2016; 57:715-32. [PMID: 26971301 DOI: 10.1093/pcp/pcw051] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2015] [Accepted: 03/07/2016] [Indexed: 05/21/2023]
Abstract
Pre-harvest sprouting (PHS) of wheat (Triticum aestivum L.) grains induces hydrolyzing enzymes such as α-amylase, which considerably decreases wheat product quality. PHS occurs when cool and wet weather conditions before harvest break dormancy and induce grain germination. In this study, we used PHS-tolerant varieties, Gifu-komugi (Gifu) and OS38, to characterize the mechanisms of both dormancy breakage and dormancy maintenance at low temperatures. Physiologically mature Gifu grains exhibited dormancy after imbibition at 20°C, but germinated at 15°C. In contrast, OS38 grains remained dormant even at temperatures as low as 5°C. Embryo half-grains cut out from the dormant Gifu grains germinated by imbibition at 20°C, similar to conventional varieties worldwide. However, OS38 embryo half-grains were still dormant. Hormonome and pharmacological analyses suggested that ABA and gibberellin metabolism are important for temperature-dependent dormancy maintenance and breakage. Imbibition at 15°C decreased ABA levels but increased gibberellin levels in embryos of freshly harvested Gifu grains. Additionally, low temperatures induced expression of the ABA catabolism genes,TaABA8' OH1 and TaABA8' OH2, and the gibberellin biosynthesis gene,TaGA3ox2, in the embryos. However, in embryos of freshly harvested OS38 grains, ABA levels were increased while gibberellin levels were suppressed at 15°C. In these dormant embryos, low temperatures induced the TaNCED ABA biosynthesis genes, but suppressed TaABA8' OH2 and TaGA3ox2.These results show that the regulatory mechanism influencing the expression of ABA and gibberellin metabolism genes may be critical for dormancy maintenance and breakage at low temperatures. Our findings should help improve PHS-resistant wheat breeding programs.
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Affiliation(s)
- Yu-ichi Kashiwakura
- Department of Life Sciences, School of Agriculture, Meiji University, 1-1-1 Higashimita, Tama-ku, Kawasaki, 214-8571 Japan Present address: Central Research Laboratory, Nitto Fuji Milling Co., Ltd., 6-2-1 Tokai, Ohta-ku, Tokyo, 143-0001 Japan. These authors contributed equally to this work
| | - Daisuke Kobayashi
- Department of Life Sciences, School of Agriculture, Meiji University, 1-1-1 Higashimita, Tama-ku, Kawasaki, 214-8571 Japan These authors contributed equally to this work
| | - Yusuke Jikumaru
- RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan Present address: Agilent Technologies Japan, Ltd., 9-1, Takakura-machi, Hachioji-shi, Tokyo, 192-8510 Japan
| | - Yumiko Takebayashi
- RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan
| | - Eiji Nambara
- Cell and Systems Biology, University of Toronto, Toronto, Ontario M5S 3B2, Canada
| | - Mitsunori Seo
- RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan
| | - Yuji Kamiya
- RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan
| | - Tetsuo Kushiro
- Department of Life Sciences, School of Agriculture, Meiji University, 1-1-1 Higashimita, Tama-ku, Kawasaki, 214-8571 Japan
| | - Naoto Kawakami
- Department of Life Sciences, School of Agriculture, Meiji University, 1-1-1 Higashimita, Tama-ku, Kawasaki, 214-8571 Japan
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