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For: Tang G, Zhu X, Gakiere B, Levanony H, Kahana A, Galili G. The bifunctional LKR/SDH locus of plants also encodes a highly active monofunctional lysine-ketoglutarate reductase using a polyadenylation signal located within an intron. Plant Physiol 2002;130:147-54. [PMID: 12226495 PMCID: PMC166548 DOI: 10.1104/pp.005660] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2002] [Revised: 04/25/2002] [Accepted: 04/29/2002] [Indexed: 05/18/2023]
Number Cited by Other Article(s)
1
Yang J, Zhou Y, Jiang Y. Amino Acids in Rice Grains and Their Regulation by Polyamines and Phytohormones. PLANTS (BASEL, SWITZERLAND) 2022;11:1581. [PMID: 35736731 PMCID: PMC9228293 DOI: 10.3390/plants11121581] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/26/2022] [Revised: 06/10/2022] [Accepted: 06/13/2022] [Indexed: 06/15/2023]
2
Yu E, Yamaji N, Mochida K, Galis I, Asaka K, Ma JF. LYSINE KETOGLUTARATE REDUCTASE TRANS-SPLICING RELATED 1 is involved in temperature-dependent root growth in rice. JOURNAL OF EXPERIMENTAL BOTANY 2021;72:6336-6349. [PMID: 34037776 DOI: 10.1093/jxb/erab240] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/09/2021] [Accepted: 05/22/2021] [Indexed: 06/12/2023]
3
Chakrabarti M, de Lorenzo L, Abdel-Ghany SE, Reddy ASN, Hunt AG. Wide-ranging transcriptome remodelling mediated by alternative polyadenylation in response to abiotic stresses in Sorghum. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2020;102:916-930. [PMID: 31909843 DOI: 10.1111/tpj.14671] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/26/2019] [Revised: 12/14/2019] [Accepted: 01/02/2020] [Indexed: 05/28/2023]
4
Bernardes WS, Menossi M. Plant 3' Regulatory Regions From mRNA-Encoding Genes and Their Uses to Modulate Expression. FRONTIERS IN PLANT SCIENCE 2020;11:1252. [PMID: 32922424 PMCID: PMC7457121 DOI: 10.3389/fpls.2020.01252] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/25/2020] [Accepted: 07/29/2020] [Indexed: 05/08/2023]
5
Zhang Z, Li J, Jamshed M, Shi Y, Liu A, Gong J, Wang S, Zhang J, Sun F, Jia F, Ge Q, Fan L, Zhang Z, Pan J, Fan S, Wang Y, Lu Q, Liu R, Deng X, Zou X, Jiang X, Liu P, Li P, Iqbal MS, Zhang C, Zou J, Chen H, Tian Q, Jia X, Wang B, Ai N, Feng G, Wang Y, Hong M, Li S, Lian W, Wu B, Hua J, Zhang C, Huang J, Xu A, Shang H, Gong W, Yuan Y. Genome-wide quantitative trait loci reveal the genetic basis of cotton fibre quality and yield-related traits in a Gossypium hirsutum recombinant inbred line population. PLANT BIOTECHNOLOGY JOURNAL 2020;18:239-253. [PMID: 31199554 PMCID: PMC6920336 DOI: 10.1111/pbi.13191] [Citation(s) in RCA: 36] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2018] [Revised: 05/30/2019] [Accepted: 06/11/2019] [Indexed: 05/02/2023]
6
Genome-wide atlas of alternative polyadenylation in the forage legume red clover. Sci Rep 2018;8:11379. [PMID: 30054540 PMCID: PMC6063945 DOI: 10.1038/s41598-018-29699-7] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2018] [Accepted: 07/05/2018] [Indexed: 12/13/2022]  Open
7
de Lorenzo L, Sorenson R, Bailey-Serres J, Hunt AG. Noncanonical Alternative Polyadenylation Contributes to Gene Regulation in Response to Hypoxia. THE PLANT CELL 2017;29:1262-1277. [PMID: 28559476 PMCID: PMC5502444 DOI: 10.1105/tpc.16.00746] [Citation(s) in RCA: 57] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/26/2016] [Revised: 05/17/2017] [Accepted: 05/30/2017] [Indexed: 05/06/2023]
8
Chrobok D, Law SR, Brouwer B, Lindén P, Ziolkowska A, Liebsch D, Narsai R, Szal B, Moritz T, Rouhier N, Whelan J, Gardeström P, Keech O. Dissecting the Metabolic Role of Mitochondria during Developmental Leaf Senescence. PLANT PHYSIOLOGY 2016;172:2132-2153. [PMID: 27744300 PMCID: PMC5129728 DOI: 10.1104/pp.16.01463] [Citation(s) in RCA: 69] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2016] [Accepted: 10/13/2016] [Indexed: 05/20/2023]
9
van Veen H, Vashisht D, Akman M, Girke T, Mustroph A, Reinen E, Hartman S, Kooiker M, van Tienderen P, Schranz ME, Bailey-Serres J, Voesenek LACJ, Sasidharan R. Transcriptomes of Eight Arabidopsis thaliana Accessions Reveal Core Conserved, Genotype- and Organ-Specific Responses to Flooding Stress. PLANT PHYSIOLOGY 2016;172:668-689. [PMID: 27208254 PMCID: PMC5047075 DOI: 10.1104/pp.16.00472] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2016] [Accepted: 05/13/2016] [Indexed: 05/02/2023]
10
Chakrabarti M, Hunt AG. CPSF30 at the Interface of Alternative Polyadenylation and Cellular Signaling in Plants. Biomolecules 2015;5:1151-68. [PMID: 26061761 PMCID: PMC4496715 DOI: 10.3390/biom5021151] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2015] [Revised: 05/26/2015] [Accepted: 05/29/2015] [Indexed: 01/05/2023]  Open
11
Wu X, Gaffney B, Hunt AG, Li QQ. Genome-wide determination of poly(A) sites in Medicago truncatula: evolutionary conservation of alternative poly(A) site choice. BMC Genomics 2014;15:615. [PMID: 25048171 PMCID: PMC4117952 DOI: 10.1186/1471-2164-15-615] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2014] [Accepted: 07/15/2014] [Indexed: 11/16/2022]  Open
12
Zhang D, Ren L, Yue JH, Wang L, Zhuo LH, Shen XH. A comprehensive analysis of flowering transition in Agapanthus praecox ssp. orientalis (Leighton) Leighton by using transcriptomic and proteomic techniques. J Proteomics 2013;80:1-25. [DOI: 10.1016/j.jprot.2012.12.028] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2012] [Revised: 11/20/2012] [Accepted: 12/15/2012] [Indexed: 10/27/2022]
13
Xing D, Li QQ. Alternative polyadenylation and gene expression regulation in plants. WILEY INTERDISCIPLINARY REVIEWS-RNA 2010;2:445-58. [DOI: 10.1002/wrna.59] [Citation(s) in RCA: 80] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
14
Anderson OD, Coleman-Derr D, Gu YQ, Heath S. Structural and transcriptional analysis of plant genes encoding the bifunctional lysine ketoglutarate reductase saccharopine dehydrogenase enzyme. BMC PLANT BIOLOGY 2010;10:113. [PMID: 20565711 PMCID: PMC3017810 DOI: 10.1186/1471-2229-10-113] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2009] [Accepted: 06/16/2010] [Indexed: 05/14/2023]
15
Jander G, Joshi V. Recent progress in deciphering the biosynthesis of aspartate-derived amino acids in plants. MOLECULAR PLANT 2010;3:54-65. [PMID: 20019093 DOI: 10.1093/mp/ssp104] [Citation(s) in RCA: 58] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
16
Lin HH, Huang LF, Su HC, Jeng ST. Effects of the multiple polyadenylation signal AAUAAA on mRNA 3'-end formation and gene expression. PLANTA 2009;230:699-712. [PMID: 19597839 DOI: 10.1007/s00425-009-0977-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2009] [Accepted: 06/19/2009] [Indexed: 05/28/2023]
17
Morris PF, Schlosser LR, Onasch KD, Wittenschlaeger T, Austin R, Provart N. Multiple horizontal gene transfer events and domain fusions have created novel regulatory and metabolic networks in the oomycete genome. PLoS One 2009;4:e6133. [PMID: 19582169 PMCID: PMC2705460 DOI: 10.1371/journal.pone.0006133] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2008] [Accepted: 06/03/2009] [Indexed: 12/19/2022]  Open
18
Jander G, Joshi V. Aspartate-Derived Amino Acid Biosynthesis in Arabidopsis thaliana. THE ARABIDOPSIS BOOK 2009;7:e0121. [PMID: 22303247 PMCID: PMC3243338 DOI: 10.1199/tab.0121] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
19
Kiess AS, Cleveland BM, Wilson ME, Klandorf H, Blemings KP. Protein-induced alterations in murine hepatic α-aminoadipate δ-semialdehyde synthase activity are mediated posttranslationally. Nutr Res 2008;28:859-65. [DOI: 10.1016/j.nutres.2008.09.010] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2008] [Revised: 09/26/2008] [Accepted: 09/26/2008] [Indexed: 10/21/2022]
20
Xing D, Zhao H, Xu R, Li QQ. Arabidopsis PCFS4, a homologue of yeast polyadenylation factor Pcf11p, regulates FCA alternative processing and promotes flowering time. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2008;54:899-910. [PMID: 18298670 DOI: 10.1111/j.1365-313x.2008.03455.x] [Citation(s) in RCA: 60] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
21
Shen Y, Ji G, Haas BJ, Wu X, Zheng J, Reese GJ, Li QQ. Genome level analysis of rice mRNA 3'-end processing signals and alternative polyadenylation. Nucleic Acids Res 2008;36:3150-61. [PMID: 18411206 PMCID: PMC2396415 DOI: 10.1093/nar/gkn158] [Citation(s) in RCA: 116] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2007] [Revised: 03/18/2008] [Accepted: 03/19/2008] [Indexed: 12/24/2022]  Open
22
Messenger RNA 3′ End Formation in Plants. Curr Top Microbiol Immunol 2008;326:151-77. [DOI: 10.1007/978-3-540-76776-3_9] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
23
Muralla R, Chen E, Sweeney C, Gray JA, Dickerman A, Nikolau BJ, Meinke D. A bifunctional locus (BIO3-BIO1) required for biotin biosynthesis in Arabidopsis. PLANT PHYSIOLOGY 2008;146:60-73. [PMID: 17993549 PMCID: PMC2230573 DOI: 10.1104/pp.107.107409] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2007] [Accepted: 11/02/2007] [Indexed: 05/20/2023]
24
Lightfoot DJ, Malone KM, Timmis JN, Orford SJ. Evidence for alternative splicing of MADS-box transcripts in developing cotton fibre cells. Mol Genet Genomics 2007;279:75-85. [PMID: 17943315 DOI: 10.1007/s00438-007-0297-y] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2007] [Accepted: 09/26/2007] [Indexed: 01/23/2023]
25
Azevedo RA, Lancien M, Lea PJ. The aspartic acid metabolic pathway, an exciting and essential pathway in plants. Amino Acids 2006;30:143-62. [PMID: 16525757 DOI: 10.1007/s00726-005-0245-2] [Citation(s) in RCA: 142] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2005] [Accepted: 06/20/2005] [Indexed: 10/24/2022]
26
Stepansky A, Less H, Angelovici R, Aharon R, Zhu X, Galili G. Lysine catabolism, an effective versatile regulator of lysine level in plants. Amino Acids 2006;30:121-5. [PMID: 16525756 DOI: 10.1007/s00726-005-0246-1] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2005] [Accepted: 06/20/2005] [Indexed: 11/26/2022]
27
Bertoni Pompeu G, Vendemiatti A, Lupino Gratão P, Aparecida Gaziola S, John Lea P, Antunes Azevedo R. Saccharopine Dehydrogenase Activity in the High-Lysine Opaque and Floury Maize Mutants. FOOD BIOTECHNOL 2006. [DOI: 10.1080/08905430500524101] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
28
Fornazier RF, Gaziola SA, Helm CV, Lea PJ, Azevedo RA. Isolation and characterization of enzymes involved in lysine catabolism from sorghum seeds. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2005;53:1791-1798. [PMID: 15740075 DOI: 10.1021/jf048525o] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
29
Moore BD. Bifunctional and moonlighting enzymes: lighting the way to regulatory control. TRENDS IN PLANT SCIENCE 2004;9:221-8. [PMID: 15130547 DOI: 10.1016/j.tplants.2004.03.005] [Citation(s) in RCA: 60] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
30
Fornazier RF, Azevedo RA, Ferreira RR, Varisi VA. Lysine catabolism: flow, metabolic role and regulation. ACTA ACUST UNITED AC 2003. [DOI: 10.1590/s1677-04202003000100002] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
31
Zhu X, Tang G, Galili G. The activity of the Arabidopsis bifunctional lysine-ketoglutarate reductase/saccharopine dehydrogenase enzyme of lysine catabolism is regulated by functional interaction between its two enzyme domains. J Biol Chem 2002;277:49655-61. [PMID: 12393892 DOI: 10.1074/jbc.m205466200] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
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