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For: Lidder P, Gutiérrez RA, Salomé PA, McClung CR, Green PJ. Circadian control of messenger RNA stability. Association with a sequence-specific messenger RNA decay pathway. Plant Physiol 2005;138:2374-85. [PMID: 16055688 PMCID: PMC1183423 DOI: 10.1104/pp.105.060368] [Citation(s) in RCA: 81] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Number Cited by Other Article(s)
1
Wu J, Chen W, Ge S, Liu X, Shan J, Zhang M, Su Y, Liu Y. ILP1 and NTR1 affect the stability of U6 snRNA during spliceosome complex disassembly in Arabidopsis. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2024;347:112199. [PMID: 39038708 DOI: 10.1016/j.plantsci.2024.112199] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2024] [Revised: 07/16/2024] [Accepted: 07/18/2024] [Indexed: 07/24/2024]
2
Ran F, Wang Y, Jiang F, Yin X, Bi Y, Shaw RK, Fan X. Studies on Candidate Genes Related to Flowering Time in a Multiparent Population of Maize Derived from Tropical and Temperate Germplasm. PLANTS (BASEL, SWITZERLAND) 2024;13:1032. [PMID: 38611561 PMCID: PMC11013272 DOI: 10.3390/plants13071032] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2024] [Revised: 03/31/2024] [Accepted: 04/04/2024] [Indexed: 04/14/2024]
3
Lewinski M, Steffen A, Kachariya N, Elgner M, Schmal C, Messini N, Köster T, Reichel M, Sattler M, Zarnack K, Staiger D. Arabidopsis thaliana GLYCINE RICH RNA-BINDING PROTEIN 7 interaction with its iCLIP target LHCB1.1 correlates with changes in RNA stability and circadian oscillation. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2024;118:203-224. [PMID: 38124335 DOI: 10.1111/tpj.16601] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/25/2023] [Accepted: 12/09/2023] [Indexed: 12/23/2023]
4
Zhang Y, Xu P, Xue W, Zhu W, Yu X. Diurnal gene oscillations modulated by RNA metabolism in tomato. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2023;116:728-743. [PMID: 37492018 DOI: 10.1111/tpj.16400] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2023] [Revised: 06/16/2023] [Accepted: 07/13/2023] [Indexed: 07/27/2023]
5
Liao Y, Zhao S, Zhang W, Zhao P, Lu B, Moody ML, Tan N, Chen L. Chromosome-level genome and high nitrogen stress response of the widespread and ecologically important wetland plant Typha angustifolia. FRONTIERS IN PLANT SCIENCE 2023;14:1138498. [PMID: 37265642 PMCID: PMC10230045 DOI: 10.3389/fpls.2023.1138498] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/05/2023] [Accepted: 04/11/2023] [Indexed: 06/03/2023]
6
Careno DA, Perez Santangelo S, Macknight RC, Yanovsky MJ. The 5'-3' mRNA Decay Pathway Modulates the Plant Circadian Network in Arabidopsis. PLANT & CELL PHYSIOLOGY 2022;63:1709-1719. [PMID: 36066193 DOI: 10.1093/pcp/pcac126] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/06/2022] [Revised: 08/18/2022] [Accepted: 09/03/2022] [Indexed: 06/15/2023]
7
Patnaik A, Alavilli H, Rath J, Panigrahi KCS, Panigrahy M. Variations in Circadian Clock Organization & Function: A Journey from Ancient to Recent. PLANTA 2022;256:91. [PMID: 36173529 DOI: 10.1007/s00425-022-04002-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2022] [Accepted: 09/21/2022] [Indexed: 06/16/2023]
8
The intersection between circadian and heat-responsive regulatory networks controls plant responses to increasing temperatures. Biochem Soc Trans 2022;50:1151-1165. [PMID: 35758233 PMCID: PMC9246330 DOI: 10.1042/bst20190572] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2022] [Revised: 06/02/2022] [Accepted: 06/06/2022] [Indexed: 11/17/2022]
9
Shim JS, Park SH, Lee DK, Kim YS, Park SC, Redillas MCFR, Seo JS, Kim JK. The Rice GLYCINE-RICH PROTEIN 3 Confers Drought Tolerance by Regulating mRNA Stability of ROS Scavenging-Related Genes. RICE (NEW YORK, N.Y.) 2021;14:31. [PMID: 33742286 PMCID: PMC7979854 DOI: 10.1186/s12284-021-00473-0] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2020] [Accepted: 03/10/2021] [Indexed: 05/08/2023]
10
Wang Z, Yang L, Wu D, Zhang N, Hua J. Polymorphisms in cis-elements confer SAUR26 gene expression difference for thermo-response natural variation in Arabidopsis. THE NEW PHYTOLOGIST 2021;229:2751-2764. [PMID: 33185314 DOI: 10.1111/nph.17078] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/11/2020] [Accepted: 11/04/2020] [Indexed: 05/22/2023]
11
Jia T, Le BH. RNA Stability Measurements Using RT-qPCR in Arabidopsis Seedlings. Bio Protoc 2020;10:e3680. [PMID: 33659351 DOI: 10.21769/bioprotoc.3680] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2019] [Revised: 04/29/2020] [Accepted: 05/07/2020] [Indexed: 11/02/2022]  Open
12
Parker MT, Knop K, Sherwood AV, Schurch NJ, Mackinnon K, Gould PD, Hall AJW, Barton GJ, Simpson GG. Nanopore direct RNA sequencing maps the complexity of Arabidopsis mRNA processing and m6A modification. eLife 2020;9:e49658. [PMID: 31931956 PMCID: PMC6959997 DOI: 10.7554/elife.49658] [Citation(s) in RCA: 270] [Impact Index Per Article: 67.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2019] [Accepted: 12/05/2019] [Indexed: 12/18/2022]  Open
13
Nagarajan VK, Kukulich PM, von Hagel B, Green PJ. RNA degradomes reveal substrates and importance for dark and nitrogen stress responses of Arabidopsis XRN4. Nucleic Acids Res 2019;47:9216-9230. [PMID: 31428786 PMCID: PMC6755094 DOI: 10.1093/nar/gkz712] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2018] [Revised: 07/26/2019] [Accepted: 08/13/2019] [Indexed: 12/12/2022]  Open
14
Wang J, Chen S, Jiang N, Li N, Wang X, Li Z, Li X, Liu H, Li L, Yang Y, Ni T, Yu C, Ma J, Zheng B, Ren G. Spliceosome disassembly factors ILP1 and NTR1 promote miRNA biogenesis in Arabidopsis thaliana. Nucleic Acids Res 2019;47:7886-7900. [PMID: 31216029 PMCID: PMC6736097 DOI: 10.1093/nar/gkz526] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2018] [Revised: 05/13/2019] [Accepted: 06/03/2019] [Indexed: 12/23/2022]  Open
15
Grinevich DO, Desai JS, Stroup KP, Duan J, Slabaugh E, Doherty CJ. Novel transcriptional responses to heat revealed by turning up the heat at night. PLANT MOLECULAR BIOLOGY 2019;101:1-19. [PMID: 31062216 PMCID: PMC6695350 DOI: 10.1007/s11103-019-00873-3] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2019] [Accepted: 04/11/2019] [Indexed: 05/29/2023]
16
Millar AJ, Urquiza U, Freeman PL, Hume A, Plotkin GD, Sorokina O, Zardilis A, Zielinski T. Practical steps to digital organism models, from laboratory model species to 'Crops in silico. JOURNAL OF EXPERIMENTAL BOTANY 2019;70:2403-2418. [PMID: 30615184 DOI: 10.1093/jxb/ery435] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/28/2018] [Accepted: 11/28/2018] [Indexed: 05/20/2023]
17
McClung CR. The Plant Circadian Oscillator. BIOLOGY 2019;8:E14. [PMID: 30870980 PMCID: PMC6466001 DOI: 10.3390/biology8010014] [Citation(s) in RCA: 87] [Impact Index Per Article: 17.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/19/2018] [Revised: 01/17/2019] [Accepted: 03/09/2019] [Indexed: 12/20/2022]
18
Beyond Transcription: Fine-Tuning of Circadian Timekeeping by Post-Transcriptional Regulation. Genes (Basel) 2018;9:genes9120616. [PMID: 30544736 PMCID: PMC6315869 DOI: 10.3390/genes9120616] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2018] [Revised: 11/29/2018] [Accepted: 12/03/2018] [Indexed: 12/28/2022]  Open
19
Deng W, Zhang K, Liu S, Zhao PX, Xu S, Wei H. JRmGRN: joint reconstruction of multiple gene regulatory networks with common hub genes using data from multiple tissues or conditions. Bioinformatics 2018;34:3470-3478. [DOI: 10.1093/bioinformatics/bty354] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2017] [Accepted: 04/27/2018] [Indexed: 11/12/2022]  Open
20
Arabidopsis mRNA decay landscape arises from specialized RNA decay substrates, decapping-mediated feedback, and redundancy. Proc Natl Acad Sci U S A 2018;115:E1485-E1494. [PMID: 29386391 DOI: 10.1073/pnas.1712312115] [Citation(s) in RCA: 65] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]  Open
21
Jia T, Zhang B, You C, Zhang Y, Zeng L, Li S, Johnson KCM, Yu B, Li X, Chen X. The Arabidopsis MOS4-Associated Complex Promotes MicroRNA Biogenesis and Precursor Messenger RNA Splicing. THE PLANT CELL 2017;29:2626-2643. [PMID: 28947490 PMCID: PMC5774577 DOI: 10.1105/tpc.17.00370] [Citation(s) in RCA: 59] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2017] [Revised: 09/07/2017] [Accepted: 09/25/2017] [Indexed: 05/18/2023]
22
Matsui A, Iida K, Tanaka M, Yamaguchi K, Mizuhashi K, Kim JM, Takahashi S, Kobayashi N, Shigenobu S, Shinozaki K, Seki M. Novel Stress-Inducible Antisense RNAs of Protein-Coding Loci Are Synthesized by RNA-Dependent RNA Polymerase. PLANT PHYSIOLOGY 2017;175:457-472. [PMID: 28710133 PMCID: PMC5580770 DOI: 10.1104/pp.17.00787] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2017] [Accepted: 07/12/2017] [Indexed: 05/03/2023]
23
Delis C, Krokida A, Tomatsidou A, Tsikou D, Beta RAA, Tsioumpekou M, Moustaka J, Stravodimos G, Leonidas DD, Balatsos NAA, Papadopoulou KK. AtHESPERIN: a novel regulator of circadian rhythms with poly(A)-degrading activity in plants. RNA Biol 2016;13:68-82. [PMID: 26619288 DOI: 10.1080/15476286.2015.1119363] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]  Open
24
Fu S, Shao J, Zhou C, Hartung JS. Transcriptome analysis of sweet orange trees infected with 'Candidatus Liberibacter asiaticus' and two strains of Citrus Tristeza Virus. BMC Genomics 2016;17:349. [PMID: 27169471 PMCID: PMC4865098 DOI: 10.1186/s12864-016-2663-9] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2015] [Accepted: 04/26/2016] [Indexed: 01/08/2023]  Open
25
Wang J, Yu Q, Xiong H, Wang J, Chen S, Yang Z, Dai S. Proteomic Insight into the Response of Arabidopsis Chloroplasts to Darkness. PLoS One 2016;11:e0154235. [PMID: 27137770 PMCID: PMC4854468 DOI: 10.1371/journal.pone.0154235] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2015] [Accepted: 04/11/2016] [Indexed: 11/23/2022]  Open
26
Montenegro-Montero A, Larrondo LF. In the Driver's Seat: The Case for Transcriptional Regulation and Coupling as Relevant Determinants of the Circadian Transcriptome and Proteome in Eukaryotes. J Biol Rhythms 2015;31:37-47. [PMID: 26446874 DOI: 10.1177/0748730415607321] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
27
Vahabi K, Sherameti I, Bakshi M, Mrozinska A, Ludwig A, Reichelt M, Oelmüller R. The interaction of Arabidopsis with Piriformospora indica shifts from initial transient stress induced by fungus-released chemical mediators to a mutualistic interaction after physical contact of the two symbionts. BMC PLANT BIOLOGY 2015;15:58. [PMID: 25849363 PMCID: PMC4384353 DOI: 10.1186/s12870-015-0419-3] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/03/2014] [Accepted: 01/08/2015] [Indexed: 05/19/2023]
28
Russo J, Olivas WM. Conditional regulation of Puf1p, Puf4p, and Puf5p activity alters YHB1 mRNA stability for a rapid response to toxic nitric oxide stress in yeast. Mol Biol Cell 2015;26:1015-29. [PMID: 25631823 PMCID: PMC4357503 DOI: 10.1091/mbc.e14-10-1452] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]  Open
29
Romanowski A, Yanovsky MJ. Circadian rhythms and post-transcriptional regulation in higher plants. FRONTIERS IN PLANT SCIENCE 2015;6:437. [PMID: 26124767 PMCID: PMC4464108 DOI: 10.3389/fpls.2015.00437] [Citation(s) in RCA: 58] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/08/2015] [Accepted: 05/28/2015] [Indexed: 05/06/2023]
30
Nolte C, Staiger D. RNA around the clock - regulation at the RNA level in biological timing. FRONTIERS IN PLANT SCIENCE 2015;6:311. [PMID: 25999975 PMCID: PMC4419606 DOI: 10.3389/fpls.2015.00311] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2015] [Accepted: 04/19/2015] [Indexed: 05/21/2023]
31
Zhang S, Liu Y, Yu B. PRL1, an RNA-binding protein, positively regulates the accumulation of miRNAs and siRNAs in Arabidopsis. PLoS Genet 2014;10:e1004841. [PMID: 25474114 PMCID: PMC4256206 DOI: 10.1371/journal.pgen.1004841] [Citation(s) in RCA: 69] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2014] [Accepted: 10/21/2014] [Indexed: 01/11/2023]  Open
32
Analysis of clock-regulated genes in Neurospora reveals widespread posttranscriptional control of metabolic potential. Proc Natl Acad Sci U S A 2014;111:16995-7002. [PMID: 25362047 DOI: 10.1073/pnas.1418963111] [Citation(s) in RCA: 107] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]  Open
33
Hotta CT, Nishiyama MY, Souza GM. Circadian rhythms of sense and antisense transcription in sugarcane, a highly polyploid crop. PLoS One 2013;8:e71847. [PMID: 23936527 PMCID: PMC3735537 DOI: 10.1371/journal.pone.0071847] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2012] [Accepted: 07/05/2013] [Indexed: 12/04/2022]  Open
34
Staiger D, Shin J, Johansson M, Davis SJ. The circadian clock goes genomic. Genome Biol 2013;14:208. [PMID: 23796230 PMCID: PMC3706883 DOI: 10.1186/gb-2013-14-6-208] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]  Open
35
Systems-based analysis of Arabidopsis leaf growth reveals adaptation to water deficit. Mol Syst Biol 2013;8:606. [PMID: 22929616 PMCID: PMC3435506 DOI: 10.1038/msb.2012.39] [Citation(s) in RCA: 175] [Impact Index Per Article: 15.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2012] [Accepted: 07/25/2012] [Indexed: 01/09/2023]  Open
36
Sun M, Hua W, Liu J, Huang S, Wang X, Liu G, Wang H. Design of new genome- and gene-sourced primers and identification of QTL for seed oil content in a specially high-oil Brassica napus cultivar. PLoS One 2012;7:e47037. [PMID: 23077542 PMCID: PMC3470593 DOI: 10.1371/journal.pone.0047037] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2012] [Accepted: 09/10/2012] [Indexed: 11/18/2022]  Open
37
DeRidder BP, Shybut ME, Dyle MC, Kremling KAG, Shapiro MB. Changes at the 3'-untranslated region stabilize Rubisco activase transcript levels during heat stress in Arabidopsis. PLANTA 2012;236:463-76. [PMID: 22411508 DOI: 10.1007/s00425-012-1623-0] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2011] [Accepted: 02/26/2012] [Indexed: 05/24/2023]
38
Park SH, Chung PJ, Juntawong P, Bailey-Serres J, Kim YS, Jung H, Bang SW, Kim YK, Do Choi Y, Kim JK. Posttranscriptional control of photosynthetic mRNA decay under stress conditions requires 3' and 5' untranslated regions and correlates with differential polysome association in rice. PLANT PHYSIOLOGY 2012;159:1111-24. [PMID: 22566494 PMCID: PMC3387698 DOI: 10.1104/pp.112.194928] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/10/2012] [Accepted: 05/02/2012] [Indexed: 05/18/2023]
39
Juntawong P, Bailey-Serres J. Dynamic Light Regulation of Translation Status in Arabidopsis thaliana. FRONTIERS IN PLANT SCIENCE 2012;3:66. [PMID: 22645595 DOI: 10.3389/fpls.2012.00066/abstract] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Received: 12/21/2011] [Accepted: 03/20/2012] [Indexed: 05/26/2023]
40
Juntawong P, Bailey-Serres J. Dynamic Light Regulation of Translation Status in Arabidopsis thaliana. FRONTIERS IN PLANT SCIENCE 2012;3:66. [PMID: 22645595 PMCID: PMC3355768 DOI: 10.3389/fpls.2012.00066] [Citation(s) in RCA: 89] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2011] [Accepted: 03/20/2012] [Indexed: 05/18/2023]
41
Staiger D, Green R. RNA-based regulation in the plant circadian clock. TRENDS IN PLANT SCIENCE 2011;16:517-523. [PMID: 21782493 DOI: 10.1016/j.tplants.2011.06.002] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2011] [Revised: 06/03/2011] [Accepted: 06/14/2011] [Indexed: 05/31/2023]
42
Iron and ROS control of the DownSTream mRNA decay pathway is essential for plant fitness. EMBO J 2011;31:175-86. [PMID: 21946558 DOI: 10.1038/emboj.2011.341] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2011] [Accepted: 08/11/2011] [Indexed: 11/08/2022]  Open
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Kojima S, Shingle DL, Green CB. Post-transcriptional control of circadian rhythms. J Cell Sci 2011;124:311-20. [PMID: 21242310 DOI: 10.1242/jcs.065771] [Citation(s) in RCA: 190] [Impact Index Per Article: 14.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]  Open
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Kim DY, Kwak E, Kim SH, Lee KH, Woo KC, Kim KT. hnRNP Q mediates a phase-dependent translation-coupled mRNA decay of mouse Period3. Nucleic Acids Res 2011;39:8901-14. [PMID: 21785138 PMCID: PMC3203584 DOI: 10.1093/nar/gkr605] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
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Zhang L, Weng W, Guo J. Posttranscriptional mechanisms in controlling eukaryotic circadian rhythms. FEBS Lett 2011;585:1400-5. [PMID: 21414314 DOI: 10.1016/j.febslet.2011.03.018] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2011] [Revised: 03/08/2011] [Accepted: 03/09/2011] [Indexed: 10/18/2022]
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Network news: prime time for systems biology of the plant circadian clock. Curr Opin Genet Dev 2011;20:588-98. [PMID: 20889330 DOI: 10.1016/j.gde.2010.08.010] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2010] [Revised: 08/12/2010] [Accepted: 08/31/2010] [Indexed: 11/24/2022]
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Sucrose Transporters and Plant Development. SIGNALING AND COMMUNICATION IN PLANTS 2011. [DOI: 10.1007/978-3-642-14369-4_8] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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Staiger D, Köster T. Spotlight on post-transcriptional control in the circadian system. Cell Mol Life Sci 2011;68:71-83. [PMID: 20803230 PMCID: PMC11114774 DOI: 10.1007/s00018-010-0513-5] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2010] [Revised: 08/16/2010] [Accepted: 08/16/2010] [Indexed: 10/19/2022]
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McClung CR. The genetics of plant clocks. ADVANCES IN GENETICS 2011;74:105-39. [PMID: 21924976 DOI: 10.1016/b978-0-12-387690-4.00004-0] [Citation(s) in RCA: 88] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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Narsai R, Castleden I, Whelan J. Common and distinct organ and stress responsive transcriptomic patterns in Oryza sativa and Arabidopsis thaliana. BMC PLANT BIOLOGY 2010;10:262. [PMID: 21106056 PMCID: PMC3095337 DOI: 10.1186/1471-2229-10-262] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/11/2010] [Accepted: 11/24/2010] [Indexed: 05/20/2023]
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