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Rawat SS, Laxmi A. Sugar signals pedal the cell cycle! FRONTIERS IN PLANT SCIENCE 2024; 15:1354561. [PMID: 38562561 PMCID: PMC10982403 DOI: 10.3389/fpls.2024.1354561] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/12/2023] [Accepted: 02/19/2024] [Indexed: 04/04/2024]
Abstract
Cell cycle involves the sequential and reiterative progression of important events leading to cell division. Progression through a specific phase of the cell cycle is under the control of various factors. Since the cell cycle in multicellular eukaryotes responds to multiple extracellular mitogenic cues, its study in higher forms of life becomes all the more important. One such factor regulating cell cycle progression in plants is sugar signalling. Because the growth of organs depends on both cell growth and proliferation, sugars sensing and signalling are key control points linking sugar perception to regulation of downstream factors which facilitate these key developmental transitions. However, the basis of cell cycle control via sugars is intricate and demands exploration. This review deals with the information on sugar and TOR-SnRK1 signalling and how they manoeuvre various events of the cell cycle to ensure proper growth and development.
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Affiliation(s)
| | - Ashverya Laxmi
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, India
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2
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Bahmani R, Kim D, Modareszadeh M, Hwang S. Ethylene and ROS mediate root growth inhibition induced by the endocrine disruptor bisphenol A (BPA). PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2023; 205:108212. [PMID: 38008009 DOI: 10.1016/j.plaphy.2023.108212] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/21/2023] [Revised: 11/12/2023] [Accepted: 11/19/2023] [Indexed: 11/28/2023]
Abstract
Bisphenol A (BPA) functions as a detrimental substance that disrupts the endocrine system in animals while also impeding the growth and development of plants. In our previous study, we demonstrated that BPA hinders the growth of roots in Arabidopsis by diminishing cell division and elongation, which is ascribed to the increased accumulation and redistribution of auxin. Here, we examined the mediation of ROS and ethylene in BPA-induced auxin accumulation and root growth inhibition. BPA enhanced ROS levels, and ROS increased auxin contents but reduced cell division activity and the expression of EXPA8 involved in root elongation. ROS scavenger treatment reversed BPA-triggered root growth retardation, auxin accumulation, and cell division inhibition. In addition, BPA induced ethylene, and ethylene synthesis inhibitor treatment reversed BPA-triggered root growth retardation and auxin accumulation. Taken together, ROS and ethylene are involved in BPA-inhibited cell elongation and cell division by mediating auxin accumulation and redistribution.
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Affiliation(s)
- Ramin Bahmani
- Department of Molecular Biology, South Korea; Department of Bioindustry and Bioresource Engineering, South Korea; Plant Engineering Research Institute, Sejong University, Seoul, 143-747, South Korea
| | - DongGwan Kim
- Department of Molecular Biology, South Korea; Department of Bioindustry and Bioresource Engineering, South Korea; Plant Engineering Research Institute, Sejong University, Seoul, 143-747, South Korea
| | - Mahsa Modareszadeh
- Department of Molecular Biology, South Korea; Department of Bioindustry and Bioresource Engineering, South Korea; Plant Engineering Research Institute, Sejong University, Seoul, 143-747, South Korea
| | - Seongbin Hwang
- Department of Molecular Biology, South Korea; Department of Bioindustry and Bioresource Engineering, South Korea; Plant Engineering Research Institute, Sejong University, Seoul, 143-747, South Korea.
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3
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Yang L, Wu X, Liu S, Zhang L, Li T, Cao Y, Duan Q. Comprehensive Analysis of BrHMPs Reveals Potential Roles in Abiotic Stress Tolerance and Pollen–Stigma Interaction in Brassica rapa. Cells 2023; 12:cells12071096. [PMID: 37048168 PMCID: PMC10093364 DOI: 10.3390/cells12071096] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2022] [Revised: 02/28/2023] [Accepted: 03/29/2023] [Indexed: 04/08/2023] Open
Abstract
Heavy metal-associated proteins (HMPs) participate in heavy metal detoxification. Although HMPs have been identified in several plants, no studies to date have identified the HMPs in Brassica rapa (B. rapa). Here, we identified 85 potential HMPs in B. rapa by bioinformatic methods. The promoters of the identified genes contain many elements associated with stress responses, including response to abscisic acid, low-temperature, and methyl jasmonate. The expression levels of BrHMP14, BrHMP16, BrHMP32, BrHMP41, and BrHMP42 were upregulated under Cu2+, Cd2+, Zn2+, and Pb2+ stresses. BrHMP06, BrHMP30, and BrHMP41 were also significantly upregulated after drought treatment. The transcripts of BrHMP06 and BrHMP11 increased mostly under cold stress. After applying salt stress, the expression of BrHMP02, BrHMP16, and BrHMP78 was induced. We observed increased BrHMP36 expression during the self-incompatibility (SI) response and decreased expression in the compatible pollination (CP) response during pollen–stigma interactions. These changes in expression suggest functions for these genes in HMPs include participating in heavy metal transport, detoxification, and response to abiotic stresses, with the potential for functions in sexual reproduction. We found potential co-functional partners of these key players by protein–protein interaction (PPI) analysis and found that some of the predicted protein partners are known to be involved in corresponding stress responses. Finally, phosphorylation investigation revealed many phosphorylation sites in BrHMPs, suggesting post-translational modification may occur during the BrHMP-mediated stress response. This comprehensive analysis provides important clues for the study of the molecular mechanisms of BrHMP genes in B. rapa, especially for abiotic stress and pollen–stigma interactions.
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Affiliation(s)
- Lin Yang
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai’an 271018, China
- College of Horticulture Science and Engineering, Shandong Agricultural University, Tai’an 271018, China
| | - Xiaoyu Wu
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai’an 271018, China
- College of Horticulture Science and Engineering, Shandong Agricultural University, Tai’an 271018, China
| | - Shangjia Liu
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai’an 271018, China
- College of Horticulture Science and Engineering, Shandong Agricultural University, Tai’an 271018, China
| | - Lina Zhang
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai’an 271018, China
- College of Horticulture Science and Engineering, Shandong Agricultural University, Tai’an 271018, China
| | - Ting Li
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai’an 271018, China
- College of Horticulture Science and Engineering, Shandong Agricultural University, Tai’an 271018, China
| | - Yunyun Cao
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai’an 271018, China
- College of Horticulture Science and Engineering, Shandong Agricultural University, Tai’an 271018, China
| | - Qiaohong Duan
- State Key Laboratory of Crop Biology, Shandong Agricultural University, Tai’an 271018, China
- College of Horticulture Science and Engineering, Shandong Agricultural University, Tai’an 271018, China
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4
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Ojosnegros S, Alvarez JM, Grossmann J, Gagliardini V, Quintanilla LG, Grossniklaus U, Fernández H. The Shared Proteome of the Apomictic Fern Dryopteris affinis ssp. affinis and Its Sexual Relative Dryopteris oreades. Int J Mol Sci 2022; 23:ijms232214027. [PMID: 36430514 PMCID: PMC9693225 DOI: 10.3390/ijms232214027] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2022] [Revised: 11/09/2022] [Accepted: 11/10/2022] [Indexed: 11/16/2022] Open
Abstract
Ferns are a diverse evolutionary lineage, sister to the seed plants, which is of great ecological importance and has a high biotechnological potential. Fern gametophytes represent one of the simplest autotrophic, multicellular plant forms and show several experimental advantages, including a simple and space-efficient in vitro culture system. However, the molecular basis of fern growth and development has hardly been studied. Here, we report on a proteomic study that identified 417 proteins shared by gametophytes of the apogamous fern Dryopteris affinis ssp. affinis and its sexual relative Dryopteris oreades. Most proteins are predicted to localize to the cytoplasm, the chloroplast, or the nucleus, and are linked to enzymatic, binding, and structural activities. A subset of 145 proteins are involved in growth, reproduction, phytohormone signaling and biosynthesis, and gene expression, including homologs of SHEPHERD (SHD), HEAT SHOCK PROTEIN 90-5 (CR88), TRP4, BOBBER 1 (BOB1), FLAVONE 3'-O-METHYLTRANSFERASE 1 (OMT1), ZEAXANTHIN EPOXIDASE (ABA1), GLUTAMATE DESCARBOXYLASE 1 (GAD), and dsRNA-BINDING DOMAIN-LIKE SUPERFAMILY PROTEIN (HLY1). Nearly 25% of the annotated proteins are associated with responses to biotic and abiotic stimuli. As for biotic stress, the proteins PROTEIN SGT1 HOMOLOG B (SGT1B), SUPPRESSOR OF SA INSENSITIVE2 (SSI2), PHOSPHOLIPASE D ALPHA 1 (PLDALPHA1), SERINE/THREONINE-PROTEIN KINASE SRK2E (OST1), ACYL CARRIER PROTEIN 4 (ACP4), and NONHOST RESISTANCE TO P. S. PHASEOLICOLA1 (GLPK) are worth mentioning. Regarding abiotic stimuli, we found proteins associated with oxidative stress: SUPEROXIDE DISMUTASE[CU-ZN] 1 (CSD1), and GLUTATHIONE S-TRANSFERASE U19 (GSTU19), light intensity SERINE HYDROXYMETHYLTRANSFERASE 1 (SHM1) and UBIQUITIN-CONJUGATING ENZYME E2 35 (UBC35), salt and heavy metal stress included MITOCHONDRIAL PHOSPHATE CARRIER PROTEIN 3 (PHT3;1), as well as drought and thermotolerance: LEA7, DEAD-BOX ATP-DEPENDENT RNA HELICASE 38 (LOS4), and abundant heat-shock proteins and other chaperones. In addition, we identified interactomes using the STRING platform, revealing protein-protein associations obtained from co-expression, co-occurrence, text mining, homology, databases, and experimental datasets. By focusing on ferns, this proteomic study increases our knowledge on plant development and evolution, and may inspire future applications in crop species.
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Affiliation(s)
- Sara Ojosnegros
- Area of Plant Physiology, Department of Organisms and Systems Biology, University of Oviedo, 33071 Oviedo, Spain
| | - José Manuel Alvarez
- Area of Plant Physiology, Department of Organisms and Systems Biology, University of Oviedo, 33071 Oviedo, Spain
| | - Jonas Grossmann
- Functional Genomic Center Zurich, University and ETH Zurich, 8092 Zurich, Switzerland
- SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland
| | - Valeria Gagliardini
- Department of Plant and Microbial Biology & Zurich-Basel Plant Science Center, University of Zurich, 8006 Zurich, Switzerland
| | - Luis G. Quintanilla
- Department of Biology and Geology, Physics and Inorganic Chemistry, University Rey Juan Carlos, 28933 Móstoles, Spain
| | - Ueli Grossniklaus
- Department of Plant and Microbial Biology & Zurich-Basel Plant Science Center, University of Zurich, 8006 Zurich, Switzerland
| | - Helena Fernández
- Area of Plant Physiology, Department of Organisms and Systems Biology, University of Oviedo, 33071 Oviedo, Spain
- Correspondence: ; Tel.: +34-985-104-811
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5
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Yu B, Wang Y, Zhou H, Li P, Liu C, Chen S, Peng Y, Zhang Y, Teng S. Genome-wide binding analysis reveals that ANAC060 directly represses sugar-induced transcription of ABI5 in Arabidopsis. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2020; 103:965-979. [PMID: 32314488 DOI: 10.1111/tpj.14777] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2019] [Revised: 03/18/2020] [Accepted: 03/31/2020] [Indexed: 06/11/2023]
Abstract
The sugar status of a plant acts as a signal affecting growth and development. The phenomenon by which high levels of sugars inhibit seedling establishment has been widely used to gain insight into sugar-signaling pathways. Natural allelic variation has been identified at the ANAC060 locus. The Arabidopsis Columbia ecotype produces a short ANAC060 protein without a transmembrane domain that is constitutively located to the nucleus, causing sugar insensitivity when overexpressed. In this study, we generated a genome-wide DNA-binding map of ANAC060 via chromatin immunoprecipitation sequencing using transgenic lines that express a functional ANAC060-GFP fusion protein in an anac060 background. A total of 3282 genes associated with ANAC060-binding sites were identified. These genes were enriched in biotic and abiotic stress responses, and the G-box binding motif was highly enriched in ANAC060-bound genomic regions. Expression microarray analysis resulted in the identification of 8350 genes whose activities were altered in the anac060 mutant and upon sugar treatment. Cluster analysis revealed that ANAC060 attenuates sugar-regulated gene expression. Direct target genes of ANAC060 included equivalent numbers of genes that were upregulated or downregulated by ANAC060. The various functions of these target genes indicate that ANAC060 has several functions. Our results demonstrate that ANAC060 directly binds to the promoter of ABI5 and represses the sugar-induced transcription of ABI5. Genetic data indicate that ABI5 is epistatic to ANAC060 in both sugar and abscisic acid responses.
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Affiliation(s)
- Bo Yu
- Laboratory of Photosynthesis and Environmental Biology, CAS Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 300 Fenglin Road, Shanghai, 200032, China
- University of Chinese Academy of Sciences, No.19(A) Yuquan Road, Beijing, 100049, China
| | - Yuejun Wang
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 300 Fenglin Road, Shanghai, 200032, China
- University of Chinese Academy of Sciences, No.19(A) Yuquan Road, Beijing, 100049, China
| | - Hua Zhou
- Laboratory of Photosynthesis and Environmental Biology, CAS Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 300 Fenglin Road, Shanghai, 200032, China
| | - Ping Li
- Laboratory of Photosynthesis and Environmental Biology, CAS Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 300 Fenglin Road, Shanghai, 200032, China
| | - Chunmei Liu
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 300 Fenglin Road, Shanghai, 200032, China
- University of Chinese Academy of Sciences, No.19(A) Yuquan Road, Beijing, 100049, China
| | - Sunlu Chen
- Laboratory of Photosynthesis and Environmental Biology, CAS Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 300 Fenglin Road, Shanghai, 200032, China
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Agriculture, Nanjing Agricultural University, 1 Weigang Road, Nanjing, 210095, China
| | - Yu Peng
- Laboratory of Photosynthesis and Environmental Biology, CAS Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 300 Fenglin Road, Shanghai, 200032, China
| | - Yijing Zhang
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 300 Fenglin Road, Shanghai, 200032, China
- University of Chinese Academy of Sciences, No.19(A) Yuquan Road, Beijing, 100049, China
| | - Sheng Teng
- Laboratory of Photosynthesis and Environmental Biology, CAS Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 300 Fenglin Road, Shanghai, 200032, China
- University of Chinese Academy of Sciences, No.19(A) Yuquan Road, Beijing, 100049, China
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6
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Bahmani R, Kim D, Modareszadeh M, Thompson AJ, Park JH, Yoo HH, Hwang S. The mechanism of root growth inhibition by the endocrine disruptor bisphenol A (BPA). ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2020; 257:113516. [PMID: 31733969 DOI: 10.1016/j.envpol.2019.113516] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/10/2019] [Revised: 10/18/2019] [Accepted: 10/28/2019] [Indexed: 05/12/2023]
Abstract
Bisphenol A (BPA) is a harmful environmental contaminant acting as an endocrine disruptor in animals, but it also affects growth and development in plants. Here, we have elucidated the functional mechanism of root growth inhibition by BPA in Arabidopsis thaliana using mutants, reporter lines and a pharmacological approach. In response to 10 ppm BPA, fresh weight and main root length were reduced, while auxin levels increased. BPA inhibited root growth by reducing root cell length in the elongation zone by suppressing expansin expression and by decreasing the length of the meristem zone by repressing cell division. The inhibition of cell elongation and cell division was attributed to the enhanced accumulation/redistribution of auxin in the elongation zone and meristem zone in response to BPA. Correspondingly, the expressions of most auxin biosynthesis and transporter genes were enhanced in roots by BPA. Taken together, it is assumed that the endocrine disruptor BPA inhibits primary root growth by inhibiting cell elongation and division through auxin accumulation/redistribution in Arabidopsis. This study will contribute to understanding how BPA affects growth and development in plants.
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Affiliation(s)
- Ramin Bahmani
- Department of Molecular Biology, Sejong University, Seoul, 143-747, South Korea; Department of Bioindustry and Bioresource Engineering, Sejong University, Seoul, 143-747, South Korea; The Plant Engineering Research Institute, Sejong University, Seoul, 143-747, South Korea
| | - DongGwan Kim
- Department of Molecular Biology, Sejong University, Seoul, 143-747, South Korea; Department of Bioindustry and Bioresource Engineering, Sejong University, Seoul, 143-747, South Korea; The Plant Engineering Research Institute, Sejong University, Seoul, 143-747, South Korea
| | - Mahsa Modareszadeh
- Department of Molecular Biology, Sejong University, Seoul, 143-747, South Korea; Department of Bioindustry and Bioresource Engineering, Sejong University, Seoul, 143-747, South Korea; The Plant Engineering Research Institute, Sejong University, Seoul, 143-747, South Korea
| | - Andrew J Thompson
- Cranfield Soil and Agrifood Institute, Cranfield University, Cranfield, Bedfordshire, MK43 0AL, UK
| | - Jeong Hoon Park
- College of Pharmacy, Hanyang University, Ansan, Gyeonggi-do 15588, South Korea
| | - Hye Hyun Yoo
- College of Pharmacy, Hanyang University, Ansan, Gyeonggi-do 15588, South Korea
| | - Seongbin Hwang
- Department of Molecular Biology, Sejong University, Seoul, 143-747, South Korea; Department of Bioindustry and Bioresource Engineering, Sejong University, Seoul, 143-747, South Korea; The Plant Engineering Research Institute, Sejong University, Seoul, 143-747, South Korea.
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7
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Kim G, Jang S, Yoon EK, Lee SA, Dhar S, Kim J, Lee MM, Lim J. Involvement of Pyridoxine/Pyridoxamine 5'-Phosphate Oxidase (PDX3) in Ethylene-Induced Auxin Biosynthesis in the Arabidopsis Root. Mol Cells 2018; 41:1033-1044. [PMID: 30453730 PMCID: PMC6315319 DOI: 10.14348/molcells.2018.0363] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2018] [Accepted: 10/10/2018] [Indexed: 12/23/2022] Open
Abstract
As sessile organisms, plants have evolved to adjust their growth and development to environmental changes. It has been well documented that the crosstalk between different plant hormones plays important roles in the coordination of growth and development of the plant. Here, we describe a novel recessive mutant, mildly insensitive to ethylene (mine), which displayed insensitivity to the ethylene precursor, ACC (1-aminocyclopropane-1-carboxylic acid), in the root under the dark-grown conditions. By contrast, mine roots exhibited a normal growth response to exogenous IAA (indole-3-acetic acid). Thus, it appears that the growth responses of mine to ACC and IAA resemble those of weak ethylene insensitive (wei) mutants. To understand the molecular events underlying the crosstalk between ethylene and auxin in the root, we identified the MINE locus and found that the MINE gene encodes the pyridoxine 5'-phosphate (PNP)/pyridoxamine 5'-phosphate (PMP) oxidase, PDX3. Our results revealed that MINE/PDX3 likely plays a role in the conversion of the auxin precursor tryptophan to indole-3-pyruvic acid in the auxin biosynthesis pathway, in which TAA1 (TRYPTOPHAN AMINOTRANSFERASE OF ARABIDOPSIS 1) and its related genes (TRYPTOPHAN AMINOTRANSFERASE RELATED 1 and 2; TAR1 and TAR2) are involved. Considering that TAA1 and TARs belong to a subgroup of PLP (pyridoxal-5'-phosphate)-dependent enzymes, we propose that PLP produced by MINE/PDX3 acts as a cofactor in TAA1/TAR-dependent auxin biosynthesis induced by ethylene, which in turn influences the crosstalk between ethylene and auxin in the Arabidopsis root.
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Affiliation(s)
- Gyuree Kim
- Department of Systems Biotechnology, Konkuk University, Seoul,
Korea
| | - Sejeong Jang
- Department of Systems Biotechnology, Konkuk University, Seoul,
Korea
| | - Eun Kyung Yoon
- Department of Systems Biotechnology, Konkuk University, Seoul,
Korea
- Temasek Life Sciences Laboratory, 1 Research Link, National University of Singapore, Singapore,
Singapore
| | - Shin Ae Lee
- Department of Systems Biotechnology, Konkuk University, Seoul,
Korea
- Department of Agricultural Biology, National Institute of Agricultural Sciences, Wanju,
Korea
| | - Souvik Dhar
- Department of Systems Biotechnology, Konkuk University, Seoul,
Korea
| | - Jinkwon Kim
- Department of Systems Biotechnology, Konkuk University, Seoul,
Korea
| | - Myeong Min Lee
- Department of Systems Biology, Yonsei University, Seoul,
Korea
| | - Jun Lim
- Department of Systems Biotechnology, Konkuk University, Seoul,
Korea
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8
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Strobl SM, Kischka D, Heilmann I, Mouille G, Schneider S. The Tonoplastic Inositol Transporter INT1 From Arabidopsis thaliana Impacts Cell Elongation in a Sucrose-Dependent Way. FRONTIERS IN PLANT SCIENCE 2018; 9:1657. [PMID: 30505313 PMCID: PMC6250803 DOI: 10.3389/fpls.2018.01657] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/16/2018] [Accepted: 10/25/2018] [Indexed: 05/29/2023]
Abstract
The tonoplastic inositol transporter INT1 is the only known transport protein in Arabidopsis that facilitates myo-inositol import from the vacuole into the cytoplasm. Impairment of the release of vacuolar inositol by knockout of INT1 results in a severe inhibition of cell elongation in roots as well as in etiolated hypocotyls. Importantly, a more strongly reduced cell elongation was observed when sucrose was supplied in the growth medium, and this sucrose-dependent effect can be complemented by the addition of exogenous myo-inositol. Comparing int1 mutants (defective in transport) with mutants defective in myo-inositol biosynthesis (mips1 mutants) revealed that the sucrose-induced inhibition in cell elongation does not just depend on inositol depletion. Secondary effects as observed for altered availability of inositol in biosynthesis mutants, as disturbed membrane turnover, alterations in PIN protein localization or alterations in inositol-derived signaling molecules could be ruled out to be responsible for impairing the cell elongation in int1 mutants. Although the molecular mechanism remains to be elucidated, our data implicate a crucial role of INT1-transported myo-inositol in regulating cell elongation in a sucrose-dependent manner and underline recent reports of regulatory roles for sucrose and other carbohydrate intermediates as metabolic semaphores.
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Affiliation(s)
- Sabrina Maria Strobl
- Molecular Plant Physiology, Department of Biology, Friedrich-Alexander-University Erlangen-Nuremberg, Erlangen, Germany
| | - Dominik Kischka
- Molecular Plant Physiology, Department of Biology, Friedrich-Alexander-University Erlangen-Nuremberg, Erlangen, Germany
| | - Ingo Heilmann
- Department of Cellular Biochemistry, Institute for Biochemistry and Biotechnology, Martin-Luther-University Halle-Wittenberg, Halle, Germany
| | - Grégory Mouille
- Institut Jean-Pierre Bourgin, INRA, AgroParisTech, CNRS, Université Paris Saclay, Versailles, France
| | - Sabine Schneider
- Molecular Plant Physiology, Department of Biology, Friedrich-Alexander-University Erlangen-Nuremberg, Erlangen, Germany
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9
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Hsiao YC, Hsu YF, Chen YC, Chang YL, Wang CS. A WD40 protein, AtGHS40, negatively modulates abscisic acid degrading and signaling genes during seedling growth under high glucose conditions. JOURNAL OF PLANT RESEARCH 2016; 129:1127-1140. [PMID: 27443795 DOI: 10.1007/s10265-016-0849-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/17/2015] [Accepted: 04/18/2016] [Indexed: 06/06/2023]
Abstract
The Arabidopsis thaliana T-DNA insertion mutant glucose hypersensitive (ghs) 40-1 exhibited hypersensitivity to glucose (Glc) and abscisic acid (ABA). The ghs40-1 mutant displayed severely impaired cotyledon greening and expansion and showed enhanced reduction in hypocotyl elongation of dark-grown seedlings when grown in Glc concentrations higher than 3 %. The Glc-hypersensitivity of ghs40-1 was correlated with the hyposensitive phenotype of 35S::AtGHS40 seedlings. The phenotypes of ghs40-1 were recovered by complementation with 35S::AtGHS40. The AtGHS40 (At5g11240) gene encodes a WD40 protein localized primarily in the nucleus and nucleolus using transient expression of AtGHS40-mRFP in onion cells and of AtGHS40-EGFP and EGFP-AtGHS40 in Arabidopsis protoplasts. The ABA biosynthesis inhibitor fluridone extensively rescued Glc-mediated growth arrest. Quantitative real time-PCR analysis showed that AtGHS40 was involved in the control of Glc-responsive genes. AtGHS40 acts downstream of HXK1 and is activated by ABI4 while ABI4 expression is negatively modulated by AtGHS40 in the Glc signaling network. However, AtGHS40 may not affect ABI1 and SnRK2.6 gene expression. Given that AtGHS40 inhibited ABA degrading and signaling gene expression levels under high Glc conditions, a new circuit of fine-tuning modulation by which ABA and ABA signaling gene expression are modulated in balance, occurred in plants. Thus, AtGHS40 may play a role in ABA-mediated Glc signaling during early seedling development. The biochemical function of AtGHS40 is also discussed.
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Affiliation(s)
- Yu-Chun Hsiao
- Graduate Institute of Biotechnology, National Chung Hsing University, Taichung, 40227, Taiwan
- NCHU-UCD Plant and Food Biotechnology Center, NCHU, Taichung, 40227, Taiwan
- Agricultural Biotechnology Center, NCHU, Taichung, 40227, Taiwan
| | - Yi-Feng Hsu
- Graduate Institute of Biotechnology, National Chung Hsing University, Taichung, 40227, Taiwan
- NCHU-UCD Plant and Food Biotechnology Center, NCHU, Taichung, 40227, Taiwan
- Agricultural Biotechnology Center, NCHU, Taichung, 40227, Taiwan
- School of Life Sciences, Southwest University, Chongqing, China
| | - Yun-Chu Chen
- Graduate Institute of Biotechnology, National Chung Hsing University, Taichung, 40227, Taiwan
- NCHU-UCD Plant and Food Biotechnology Center, NCHU, Taichung, 40227, Taiwan
- Agricultural Biotechnology Center, NCHU, Taichung, 40227, Taiwan
| | - Yi-Lin Chang
- Graduate Institute of Biotechnology, National Chung Hsing University, Taichung, 40227, Taiwan
| | - Co-Shine Wang
- Graduate Institute of Biotechnology, National Chung Hsing University, Taichung, 40227, Taiwan.
- NCHU-UCD Plant and Food Biotechnology Center, NCHU, Taichung, 40227, Taiwan.
- Agricultural Biotechnology Center, NCHU, Taichung, 40227, Taiwan.
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10
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Hu Y. Early generation of nitric oxide contributes to copper tolerance through reducing oxidative stress and cell death in hulless barley roots. JOURNAL OF PLANT RESEARCH 2016; 129:963-978. [PMID: 27294966 DOI: 10.1007/s10265-016-0841-0] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2016] [Accepted: 04/12/2016] [Indexed: 05/23/2023]
Abstract
The objective of this study was to investigate the specific role of nitric oxide (NO) in the early response of hulless barley roots to copper (Cu) stress. We used the fluorescent probe diaminofluorescein-FM diacetate to establish NO localization, and hydrogen peroxide (H2O2)-special labeling and histochemical procedures for the detection of reactive oxygen species (ROS) in the root apex. An early production of NO was observed in Cu-treated root tips of hulless barley, but the detection of NO levels was decreased by supplementation with a NO scavenger, 2-phenyl-4,4,5,5-tetramethylimidazoline-1-oxyl-3-oxide (c-PTIO). Application of sodium nitroprusside (a NO donor) relieved Cu-induced root inhibition, ROS accumulation and oxidative damage, while c-PTIO treatment had a synergistic effect with Cu and further enhanced ROS levels and oxidative stress. In addition, the Cu-dependent increase in activities of superoxide dismutase, peroxidase and ascorbate peroxidase were further enhanced by exogenous NO, but application of c-PTIO decreased the activities of catalase and ascorbate peroxidase in Cu-treated roots. Subsequently, cell death was observed in root tips and was identified as a type of programed cell death (PCD) by terminal deoxynucleotidyl transferase dUTP nick end labeling assay. The addition of NO prevented the increase of cell death in root tips, whereas inhibiting NO accumulation further increased the number of cells undergoing PCD. These results revealed that NO production is an early response of hulless barley roots to Cu stress and that NO contributes to Cu tolerance in hulless barley possibly by modulating antioxidant defense, subsequently reducing oxidative stress and PCD in root tips.
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Affiliation(s)
- Yanfeng Hu
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Harbin, 150000, China.
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11
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Yoon EK, Dhar S, Lee MH, Song JH, Lee SA, Kim G, Jang S, Choi JW, Choe JE, Kim JH, Lee MM, Lim J. Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots. MOLECULAR PLANT 2016; 9:1197-1209. [PMID: 27353361 DOI: 10.1016/j.molp.2016.06.007] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2016] [Revised: 05/04/2016] [Accepted: 06/20/2016] [Indexed: 05/25/2023]
Abstract
Development of the functional endodermis of Arabidopsis thaliana roots is controlled, in part, by GRAS transcription factors, namely SHORT-ROOT (SHR), SCARECROW (SCR), and SCARECROW-LIKE 23 (SCL23). Recently, it has been shown that the SHR-SCR-SCL23 regulatory module is also essential for specification of the endodermis (known as the bundle sheath) in leaves. Nevertheless, compared with what is known about the role of the SHR-SCR-SCL23 regulatory network in roots, the molecular interactions of SHR, SCR, and SCL23 are much less understood in shoots. Here, we show that SHR forms protein complexes with SCL23 to regulate transcription of SCL23 in shoots, similar to the regulation mode of SCR expression. Our results indicate that SHR acts as master regulator to directly activate the expression of SCR and SCL23. In the SHR-SCR-SCL23 network, we found a previously uncharacterized negative feedback loop whereby SCL23 modulates SHR levels. Through molecular, genetic, physiological, and morphological analyses, we also reveal that the SHR-SCR-SCL23 module plays a key role in the formation of the endodermis (known as the starch sheath) in hypocotyls. Taken together, our results provide new insights into the regulatory role of the SHR-SCR-SCL23 network in the endodermis development in both roots and shoots.
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Affiliation(s)
- Eun Kyung Yoon
- Department of Systems Biotechnology, Konkuk University, Seoul 05029, Korea
| | - Souvik Dhar
- Department of Systems Biotechnology, Konkuk University, Seoul 05029, Korea
| | - Mi-Hyun Lee
- Department of Systems Biotechnology, Konkuk University, Seoul 05029, Korea
| | - Jae Hyo Song
- Department of Systems Biology, Yonsei University, Seoul 03722, Korea
| | - Shin Ae Lee
- Department of Systems Biotechnology, Konkuk University, Seoul 05029, Korea
| | - Gyuree Kim
- Department of Systems Biotechnology, Konkuk University, Seoul 05029, Korea
| | - Sejeong Jang
- Department of Systems Biotechnology, Konkuk University, Seoul 05029, Korea
| | - Ji Won Choi
- Department of Systems Biotechnology, Konkuk University, Seoul 05029, Korea
| | - Jeong-Eun Choe
- Department of Systems Biotechnology, Konkuk University, Seoul 05029, Korea
| | - Jeong Hoe Kim
- Department of Biology, Kyungpook National University, Daegu 41566, Korea
| | - Myeong Min Lee
- Department of Systems Biology, Yonsei University, Seoul 03722, Korea
| | - Jun Lim
- Department of Systems Biotechnology, Konkuk University, Seoul 05029, Korea.
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12
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Lee SA, Jang S, Yoon EK, Heo JO, Chang KS, Choi JW, Dhar S, Kim G, Choe JE, Heo JB, Kwon C, Ko JH, Hwang YS, Lim J. Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue. MOLECULAR PLANT 2016; 9:870-84. [PMID: 26970019 DOI: 10.1016/j.molp.2016.02.009] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/10/2015] [Revised: 02/14/2016] [Accepted: 02/23/2016] [Indexed: 05/21/2023]
Abstract
In multicellular organisms, controlling the timing and extent of asymmetric cell divisions (ACDs) is crucial for correct patterning. During post-embryonic root development in Arabidopsis thaliana, ground tissue (GT) maturation involves an additional ACD of the endodermis, which generates two different tissues: the endodermis (inner) and the middle cortex (outer). It has been reported that the abscisic acid (ABA) and gibberellin (GA) pathways are involved in middle cortex (MC) formation. However, the molecular mechanisms underlying the interaction between ABA and GA during GT maturation remain largely unknown. Through transcriptome analyses, we identified a previously uncharacterized C2H2-type zinc finger gene, whose expression is regulated by GA and ABA, thus named GAZ (GA- AND ABA-RESPONSIVE ZINC FINGER). Seedlings ectopically overexpressing GAZ (GAZ-OX) were sensitive to ABA and GA during MC formation, whereas GAZ-SRDX and RNAi seedlings displayed opposite phenotypes. In addition, our results indicated that GAZ was involved in the transcriptional regulation of ABA and GA homeostasis. In agreement with previous studies that ABA and GA coordinate to control the timing of MC formation, we also confirmed the unique interplay between ABA and GA and identified factors and regulatory networks bridging the two hormone pathways during GT maturation of the Arabidopsis root.
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Affiliation(s)
- Shin Ae Lee
- Department of Systems Biotechnology, Konkuk University, Seoul 05029, Korea
| | - Sejeong Jang
- Department of Systems Biotechnology, Konkuk University, Seoul 05029, Korea
| | - Eun Kyung Yoon
- Department of Systems Biotechnology, Konkuk University, Seoul 05029, Korea
| | - Jung-Ok Heo
- Department of Systems Biotechnology, Konkuk University, Seoul 05029, Korea
| | - Kwang Suk Chang
- Department of Systems Biotechnology, Konkuk University, Seoul 05029, Korea
| | - Ji Won Choi
- Department of Systems Biotechnology, Konkuk University, Seoul 05029, Korea
| | - Souvik Dhar
- Department of Systems Biotechnology, Konkuk University, Seoul 05029, Korea
| | - Gyuree Kim
- Department of Systems Biotechnology, Konkuk University, Seoul 05029, Korea
| | - Jeong-Eun Choe
- Department of Systems Biotechnology, Konkuk University, Seoul 05029, Korea
| | - Jae Bok Heo
- Department of Molecular Biotechnology, Dong-A University, Busan 49201, Korea
| | - Chian Kwon
- Department of Molecular Biology, Dankook University, Yongin 16890, Korea
| | - Jae-Heung Ko
- Department of Plant and Environmental New Resources, Kyung Hee University, Yongin 17104, Korea
| | - Yong-Sic Hwang
- Department of Systems Biotechnology, Konkuk University, Seoul 05029, Korea
| | - Jun Lim
- Department of Systems Biotechnology, Konkuk University, Seoul 05029, Korea.
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Peñarrubia L, Romero P, Carrió-Seguí A, Andrés-Bordería A, Moreno J, Sanz A. Temporal aspects of copper homeostasis and its crosstalk with hormones. FRONTIERS IN PLANT SCIENCE 2015; 6:255. [PMID: 25941529 PMCID: PMC4400860 DOI: 10.3389/fpls.2015.00255] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2014] [Accepted: 03/31/2015] [Indexed: 05/20/2023]
Abstract
To cope with the dual nature of copper as being essential and toxic for cells, plants temporarily adapt the expression of copper homeostasis components to assure its delivery to cuproproteins while avoiding the interference of potential oxidative damage derived from both copper uptake and photosynthetic reactions during light hours. The circadian clock participates in the temporal organization of coordination of plant nutrition adapting metabolic responses to the daily oscillations. This timely control improves plant fitness and reproduction and holds biotechnological potential to drive increased crop yields. Hormonal pathways, including those of abscisic acid, gibberellins, ethylene, auxins, and jasmonates are also under direct clock and light control, both in mono and dicotyledons. In this review, we focus on copper transport in Arabidopsis thaliana and Oryza sativa and the presumable role of hormones in metal homeostasis matching nutrient availability to growth requirements and preventing metal toxicity. The presence of putative hormone-dependent regulatory elements in the promoters of copper transporters genes suggests hormonal regulation to match special copper requirements during plant development. Spatial and temporal processes that can be affected by hormones include the regulation of copper uptake into roots, intracellular trafficking and compartmentalization, and long-distance transport to developing vegetative and reproductive tissues. In turn, hormone biosynthesis and signaling are also influenced by copper availability, which suggests reciprocal regulation subjected to temporal control by the central oscillator of the circadian clock. This transcriptional regulatory network, coordinates environmental and hormonal signaling with developmental pathways to allow enhanced micronutrient acquisition efficiency.
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Affiliation(s)
- Lola Peñarrubia
- Laboratory of Plant Molecular Biology, Department of Biochemistry and Molecular Biology, University of Valencia, ValenciaSpain
- *Correspondence: Lola Peñarrubia, Laboratory of Plant Molecular Biology, Department of Biochemistry and Molecular Biology, University of Valencia, Avenida Doctor Moliner 50, 46100 Burjassot, Valencia, Spain
| | - Paco Romero
- Laboratory of Plant Molecular Biology, Department of Biochemistry and Molecular Biology, University of Valencia, ValenciaSpain
| | - Angela Carrió-Seguí
- Laboratory of Plant Molecular Biology, Department of Biochemistry and Molecular Biology, University of Valencia, ValenciaSpain
| | - Amparo Andrés-Bordería
- Laboratory of Plant Molecular Biology, Department of Biochemistry and Molecular Biology, University of Valencia, ValenciaSpain
| | - Joaquín Moreno
- Laboratory of Plant Molecular Biology, Department of Biochemistry and Molecular Biology, University of Valencia, ValenciaSpain
| | - Amparo Sanz
- Department of Plant Biology, University of Valencia, ValenciaSpain
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14
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Yang H, Liu J, Huang S, Guo T, Deng L, Hua W. Selection and evaluation of novel reference genes for quantitative reverse transcription PCR (qRT-PCR) based on genome and transcriptome data in Brassica napus L. Gene 2014; 538:113-22. [PMID: 24406618 DOI: 10.1016/j.gene.2013.12.057] [Citation(s) in RCA: 73] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2013] [Revised: 12/17/2013] [Accepted: 12/27/2013] [Indexed: 10/25/2022]
Abstract
Selection of reference genes in Brassica napus, a tetraploid (4×) species, is a very difficult task without information on genome and transcriptome. By now, only several traditional reference genes which show significant expression differentiation under different conditions are used in B. napus. In the present study, based on genome and transcriptome data of the rapeseed Zhongshuang-11 cultivar, 14 candidate reference genes were screened for investigation in different tissues, cultivars, and treated conditions of B. napus. These genes were as follows: ELF5, ENTH, F-BOX7, F-BOX2, FYPP1, GDI1, GYF, MCP2d, OTP80, PPR, SPOC, Unknown1, Unknown2 and UBA. Among them, excluding GYF and FYPP1, another 12 genes, were identified to perform better than traditional reference genes ACTIN7 and GAPDH. To further validate the accuracy of the newly developed reference genes in normalization, expression levels of BnCAT1 (B. napus catalase 1) in different rapeseed tissues and seedlings under stress conditions were normalized by the three most stable reference genes PPR, GDI1, and ENTH and little difference existed in normalization results. To the best of our knowledge, this is the first time B. napus reference genes have been provided with the help of complete genome and transcriptome information. The new reference genes provided in this study are more accurate than previously reported reference genes in quantifying expression levels of B. napus genes.
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Affiliation(s)
- Hongli Yang
- Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Wuhan 430062, PR China
| | - Jing Liu
- Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Wuhan 430062, PR China
| | - Shunmou Huang
- Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Wuhan 430062, PR China
| | - Tingting Guo
- College of Life Sciences, Wuhan University, Wuhan 430072, PR China
| | - Linbin Deng
- Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Wuhan 430062, PR China
| | - Wei Hua
- Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Wuhan 430062, PR China.
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15
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Hsu YF, Chen YC, Hsiao YC, Wang BJ, Lin SY, Cheng WH, Jauh GY, Harada JJ, Wang CS. AtRH57, a DEAD-box RNA helicase, is involved in feedback inhibition of glucose-mediated abscisic acid accumulation during seedling development and additively affects pre-ribosomal RNA processing with high glucose. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2014; 77:119-35. [PMID: 24176057 PMCID: PMC4350433 DOI: 10.1111/tpj.12371] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2013] [Revised: 09/28/2013] [Accepted: 10/24/2013] [Indexed: 05/04/2023]
Abstract
The Arabidopsis thaliana T-DNA insertion mutant rh57-1 exhibited hypersensitivity to glucose (Glc) and abscisic acid (ABA). The other two rh57 mutants also showed Glc hypersensitivity similar to rh57-1, strongly suggesting that the Glc-hypersensitive feature of these mutants results from mutation of AtRH57. rh57-1 and rh57-3 displayed severely impaired seedling growth when grown in Glc concentrations higher than 3%. The gene, AtRH57 (At3g09720), was expressed in all Arabidopsis organs and its transcript was significantly induced by ABA, high Glc and salt. The new AtRH57 belongs to class II DEAD-box RNA helicase gene family. Transient expression of AtRH57-EGFP (enhanced green fluorescent protein) in onion cells indicated that AtRH57 was localized in the nucleus and nucleolus. Purified AtRH57-His protein was shown to unwind double-stranded RNA independent of ATP in vitro. The ABA biosynthesis inhibitor fluridone profoundly redeemed seedling growth arrest mediated by sugar. rh57-1 showed increased ABA levels when exposed to high Glc. Quantitative real time polymerase chain reaction analysis showed that AtRH57 acts in a signaling network downstream of HXK1. A feedback inhibition of ABA accumulation mediated by AtRH57 exists within the sugar-mediated ABA signaling. AtRH57 mutation and high Glc conditions additively caused a severe defect in small ribosomal subunit formation. The accumulation of abnormal pre-rRNA and resistance to protein synthesis-related antibiotics were observed in rh57 mutants and in the wild-type Col-0 under high Glc conditions. These results suggested that AtRH57 plays an important role in rRNA biogenesis in Arabidopsis and participates in response to sugar involving Glc- and ABA signaling during germination and seedling growth.
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Affiliation(s)
- Yi-Feng Hsu
- Graduate Institute of Biotechnology, National Chung Hsing UniversityTaichung, 40227, Taiwan
| | - Yun-Chu Chen
- Graduate Institute of Biotechnology, National Chung Hsing UniversityTaichung, 40227, Taiwan
| | - Yu-Chun Hsiao
- Graduate Institute of Biotechnology, National Chung Hsing UniversityTaichung, 40227, Taiwan
| | - Bing-Jyun Wang
- Graduate Institute of Biotechnology, National Chung Hsing UniversityTaichung, 40227, Taiwan
| | - Shih-Yun Lin
- Institute of Plant and Microbial Biology, Academia SinicaNankang, Taipei, 11529, Taiwan
| | - Wan-Hsing Cheng
- Institute of Plant and Microbial Biology, Academia SinicaNankang, Taipei, 11529, Taiwan
| | - Guang-Yuh Jauh
- Institute of Plant and Microbial Biology, Academia SinicaNankang, Taipei, 11529, Taiwan
| | - John J Harada
- Section of Plant Biology, College of Biological Sciences, University of CaliforniaDavis, CA, 95616, USA
| | - Co-Shine Wang
- Graduate Institute of Biotechnology, National Chung Hsing UniversityTaichung, 40227, Taiwan
- NCHU-UCD Plant and Food Biotechnology Center, NCHU and Agricultural Biotechnology Center, NCHUTaichung, 40227, Taiwan
- *For correspondence (e-mail )
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16
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Yuan M, Wang S. Rice MtN3/saliva/SWEET family genes and their homologs in cellular organisms. MOLECULAR PLANT 2013; 6:665-74. [PMID: 23430047 DOI: 10.1093/mp/sst035] [Citation(s) in RCA: 140] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
The MtN3/saliva/SWEET-type genes, existing either alone or in a family group, are found in diverse organisms, from monocellular protozoa to higher eukaryotes, indicating their importance in cellular organisms. These genes encode polytopic membrane proteins that feature an MtN3/saliva domain, also known as a PQ loop repeat. The rice MtN3/saliva/SWEET gene family consists of 21 members and is among the largest families in sequenced organisms. Accumulating data suggest that these genes are involved in multiple physiological processes, including reproductive development, senescence, environmental adaptation, and host-pathogen interaction, in different species. In rice, some members of the family, including Xa13/Os8N3/OsSWEET11, which is essential for reproductive development, are used by the pathogenic bacterium Xanthomonas oryzae pv. oryzae to invade its host. Emerging data have also revealed that at least some MtN3/saliva/SWEET-type proteins may regulate different physiological processes by facilitating ion transport via interaction with ion transporters or as sugar transporters. The accumulating knowledge about MtN3/saliva/SWEET-type genes will help to elucidate the molecular bases of their function in different organisms.
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Affiliation(s)
- Meng Yuan
- National Key Laboratory of Crop Genetic Improvement, National Center of Plant Gene Research Wuhan, Huazhong Agricultural University, Wuhan 430070, China
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León P, Gregorio J, Cordoba E. ABI4 and its role in chloroplast retrograde communication. FRONTIERS IN PLANT SCIENCE 2012; 3:304. [PMID: 23335930 PMCID: PMC3541689 DOI: 10.3389/fpls.2012.00304] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2012] [Accepted: 12/18/2012] [Indexed: 05/17/2023]
Abstract
The acquisition of plastids is a landmark event in plant evolution. The proper functionality of these organelles depends on strict and continuous communication between the plastids and the nucleus to precisely adjust gene expression in response to the organelle's requirements. Signals originating from the plastids impact the expression of a variety of nuclear genes, and this retrograde communication is essential to couple the nuclear expression of plastid-localized products with organelle gene expression and, ultimately, functionality. Major advances have been made in this field over the past few years with the characterization of independent retrograde signaling pathways and the identification of some of their components. One such factor is the nuclear transcriptional factor ABI4 (ABA-INSENTIVE 4). ABI4, together with the plastid PPR GUN1 protein, has been proposed to function as a node of convergence for multiple plastid retrograde signaling pathways. ABI4 is conserved among plants and also plays important roles in various critical developmental and metabolic processes. ABI4 is a versatile regulator that positively and negatively modulates the expression of many genes, including other transcriptional factors. However, its mode of action during plastid retrograde signaling is not fully understood. In this review, we describe the current evidence that supports the participation of ABI4 in different retrograde communication pathways. ABI4 is regulated at the transcriptional and post-transcriptional level. A known regulator of ABI4 includes the PTM transcription factor, which moves from the chloroplast to the nucleus. This transcription factor is a candidate for the transmission of retrograde signals between the plastid and ABI4.
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Affiliation(s)
- Patricia León
- *Correspondence: Patricia León, Departamento de Biología Molecular de Plantas, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Avenida Universidad 2001, Colonia Chamilpa, Cuernavaca, Morelos 62210, México. e-mail:
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