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Fraga OT, Silva LAC, Silva JCF, Bevitori R, Silva FDA, Pereira WA, Reis PAB, Fontes EPB. Expansion and diversification of the Glycine max (Gm) ERD15-like subfamily of the PAM2-like superfamily. PLANTA 2024; 260:108. [PMID: 39333439 DOI: 10.1007/s00425-024-04538-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2024] [Accepted: 09/22/2024] [Indexed: 09/29/2024]
Abstract
MAIN CONCLUSION Despite modulating senescence and drought responses, the GmERD15-like subfamily members are differentially induced by multiple stresses and diverge partially in stress signaling functions. The PAM2 motif represents a binding site for poly (A)-binding proteins (PABPs), often associated with RNA metabolism regulation. The PAM2-containing protein ERD15 stands out as a critical regulator of diverse stress responses in plants. Despite the relevance of the PAM2 motif, a comprehensive analysis of the PAM2 superfamily and ERD15-like subfamily in the plant kingdom is lacking. Here, we provide an extensive in silico analysis of the PAM2 superfamily and the ERD15-like subfamily in soybean, using Arabidopsis and rice sequences as prototypes. The Glycine max ERD15-like subfamily members were clustered in pairs, likely originating from DNA-based gene duplication, as the paralogs display high sequence conservation, similar exon/intron genome organization, and are undergoing purifying selection. Complementation analyses of an aterd15 mutant demonstrated that the plant ERD15-like subfamily members are functionally redundant in response to drought, osmotic stress, and dark-induced senescence. Nevertheless, the soybean members displayed differential expression profiles, biochemical activity, and subcellular localization, consistent with functional diversification. The expression profiles of Glyma04G138600 under salicylic acid (SA) and abscisic acid (ABA) treatments differed oppositely from those of the other GmERD15-like genes. Abiotic stress-induced coexpression analysis with soybean PABPs showed that Glyma04G138600 was clustered separately from other GmERD15s. In contrast to the AtERD15 stress-induced nuclear redistribution, Glyma04G138600 and Glyma02G260800 localized to the cytoplasm, while Glyma03G131900 fractionated between the cytoplasm and nucleus under normal and stress conditions. These data collectively indicate that despite modulating senescence and drought responses, the GmERD15-like subfamily members are differentially induced by multiple stresses and may diverge partially in stress signaling functions.
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Affiliation(s)
- Otto T Fraga
- Department of Biochemistry and Molecular Biology, BIOAGRO, National Institute of Science and Technology in Plant-Pest Interactions, Universidade Federal de Viçosa, Viçosa, MG, 36571.000, Brazil
| | - Lucas A C Silva
- Department of Biochemistry and Molecular Biology, BIOAGRO, National Institute of Science and Technology in Plant-Pest Interactions, Universidade Federal de Viçosa, Viçosa, MG, 36571.000, Brazil
| | - José Cleydson F Silva
- Department of Biochemistry and Molecular Biology, BIOAGRO, National Institute of Science and Technology in Plant-Pest Interactions, Universidade Federal de Viçosa, Viçosa, MG, 36571.000, Brazil
| | - Rosângela Bevitori
- Biotechnology Laboratory, Embrapa Rice and Beans, Rodovia GO-462, Km 12, Santo Antônio de Goiás, GO, 75375-000, Brazil
| | - Fredy D A Silva
- Department of Biochemistry and Molecular Biology, BIOAGRO, National Institute of Science and Technology in Plant-Pest Interactions, Universidade Federal de Viçosa, Viçosa, MG, 36571.000, Brazil
| | - Welison A Pereira
- Department of Biology, Universidade Federal de Lavras, Lavras, 37200-900, Brazil
| | - Pedro A B Reis
- Department of Biochemistry and Molecular Biology, BIOAGRO, National Institute of Science and Technology in Plant-Pest Interactions, Universidade Federal de Viçosa, Viçosa, MG, 36571.000, Brazil.
| | - Elizabeth P B Fontes
- Department of Biochemistry and Molecular Biology, BIOAGRO, National Institute of Science and Technology in Plant-Pest Interactions, Universidade Federal de Viçosa, Viçosa, MG, 36571.000, Brazil.
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Cavalcante FLP, da Silva SJ, de Sousa Lopes L, de Oliveira Paula-Marinho S, Guedes MIF, Gomes-Filho E, de Carvalho HH. Unveiling a differential metabolite modulation of sorghum varieties under increasing tunicamycin-induced endoplasmic reticulum stress. Cell Stress Chaperones 2023; 28:889-907. [PMID: 37775652 PMCID: PMC10746676 DOI: 10.1007/s12192-023-01382-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2023] [Revised: 06/28/2023] [Accepted: 09/11/2023] [Indexed: 10/01/2023] Open
Abstract
Plants trigger endoplasmic reticulum (ER) pathways to survive stresses, but the assistance of ER in plant tolerance still needs to be explored. Thus, we selected sensitive and tolerant contrasting abiotic stress sorghum varieties to test if they present a degree of tolerance to ER stress. Accordingly, this work evaluated crescent concentrations of tunicamycin (TM µg mL-1): control (0), lower (0.5), mild (1.5), and higher (2.5) on the initial establishment of sorghum seedlings CSF18 and CSF20. ER stress promoted growth and metabolism reductions, mainly in CSF18, from mild to higher TM. The lowest TM increased SbBiP and SbPDI chaperones, as well as SbbZIP60, and SbbIRE1 gene expressions, but mild and higher TM decreased it. However, CSF20 exhibited higher levels of SbBiP and SbbIRE1 transcripts. It corroborated different metabolic profiles among all TM treatments in CSF18 shoots and similarities between profiles of mild and higher TM in CSF18 roots. Conversely, TM profiles of both shoots and roots of CSF20 overlapped, although it was not complete under low TM treatment. Furthermore, ER stress induced an increase of carbohydrates (dihydroxyacetone in shoots, and cellobiose, maltose, ribose, and sucrose in roots), and organic acids (pyruvic acid in shoots, and butyric and succinic acids in roots) in CSF20, which exhibited a higher degree of ER stress tolerance compared to CSF18 with the root being the most affected plant tissue. Thus, our study provides new insights that may help to understand sorghum tolerance and the ER disturbance as significant contributor for stress adaptation and tolerance engineering.
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Affiliation(s)
| | - Sávio Justino da Silva
- Department of Biochemistry and Molecular Biology, Federal University of Ceará, Fortaleza, CE, CEP-60440-554, Brazil
| | - Lineker de Sousa Lopes
- Department of Biochemistry and Molecular Biology, Federal University of Ceará, Fortaleza, CE, CEP-60440-554, Brazil
| | | | - Maria Izabel Florindo Guedes
- Biotechnology and Molecular Biology Laboratory, State University of Ceará (UECE), Av. Dr. Silas Munguba, 1700, Fortaleza, CE, 60714-903, Brazil
| | - Enéas Gomes-Filho
- Department of Biochemistry and Molecular Biology, Federal University of Ceará, Fortaleza, CE, CEP-60440-554, Brazil
| | - Humberto Henrique de Carvalho
- Department of Biochemistry and Molecular Biology, Federal University of Ceará, Fortaleza, CE, CEP-60440-554, Brazil.
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Lihavainen J, Šimura J, Bag P, Fataftah N, Robinson KM, Delhomme N, Novák O, Ljung K, Jansson S. Salicylic acid metabolism and signalling coordinate senescence initiation in aspen in nature. Nat Commun 2023; 14:4288. [PMID: 37463905 DOI: 10.1038/s41467-023-39564-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2022] [Accepted: 06/20/2023] [Indexed: 07/20/2023] Open
Abstract
Deciduous trees exhibit a spectacular phenomenon of autumn senescence driven by the seasonality of their growth environment, yet there is no consensus which external or internal cues trigger it. Senescence starts at different times in European aspen (Populus tremula L.) genotypes grown in same location. By integrating omics studies, we demonstrate that aspen genotypes utilize similar transcriptional cascades and metabolic cues to initiate senescence, but at different times during autumn. The timing of autumn senescence initiation appeared to be controlled by two consecutive "switches"; 1) first the environmental variation induced the rewiring of the transcriptional network, stress signalling pathways and metabolic perturbations and 2) the start of senescence process was defined by the ability of the genotype to activate and sustain stress tolerance mechanisms mediated by salicylic acid. We propose that salicylic acid represses the onset of leaf senescence in stressful natural conditions, rather than promoting it as often observed in annual plants.
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Affiliation(s)
- Jenna Lihavainen
- Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 90189, Umeå, Sweden
| | - Jan Šimura
- Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 901 83, Umeå, Sweden
| | - Pushan Bag
- Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 90189, Umeå, Sweden
- Section of Molecular Plant Biology, Department of Biology, University of Oxford, Oxford, UK
| | - Nazeer Fataftah
- Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 90189, Umeå, Sweden
| | - Kathryn Megan Robinson
- Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 90189, Umeå, Sweden
| | - Nicolas Delhomme
- Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 901 83, Umeå, Sweden
| | - Ondřej Novák
- Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 901 83, Umeå, Sweden
- Laboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany of the Czech Academy of Sciences, Šlechtitelů 27, CZ-783 71, Olomouc, Czech Republic
| | - Karin Ljung
- Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 901 83, Umeå, Sweden
| | - Stefan Jansson
- Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 90189, Umeå, Sweden.
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Giordano L, Schimmerling M, Panabières F, Allasia V, Keller H. The exodomain of the impaired oomycete susceptibility 1 receptor mediates both endoplasmic reticulum stress responses and abscisic acid signalling during downy mildew infection of Arabidopsis. MOLECULAR PLANT PATHOLOGY 2022; 23:1783-1791. [PMID: 36103373 PMCID: PMC9644275 DOI: 10.1111/mpp.13265] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/18/2022] [Revised: 07/13/2022] [Accepted: 08/18/2022] [Indexed: 06/15/2023]
Abstract
The phytohormone abscisic acid (ABA) regulates cell growth and plant development, and contributes to defence responses to pathogens. We previously showed that the Arabidopsis malectin-like domain leucine-rich repeat receptor-like kinase (MLD-LRR-RLK) impaired oomycete susceptibility 1 (IOS1) attenuates ABA signalling during infection with the oomycete downy mildew pathogen Hyaloperonospora arabidopsidis. The exodomain of IOS1 with its MLD retains the receptor in the endoplasmic reticulum (ER), where it interacts with the ribophorin HAP6 to dampen a pathogen-induced ER stress response called the unfolded protein response (UPR). The down-regulation of both ABA and UPR signalling probably provides the pathogen with an advantage for infection. Here, we show that ABA-related phenotypes of the ios1-1 mutant, such as up-regulated expression of ABA-responsive genes and hypersensitivity to exogenous ABA application, were reverted by expression of the IOS1 exodomain in the mutant background. Furthermore, knockdown mutants for ER-resident HAP6 showed similarly reduced UPR and ABA signalling, indicating that HAP6 positively regulates both pathways. Our data suggest that the IOS1 exodomain and HAP6 contribute in the ER to the IOS1-mediated interference with ABA and UPR signalling.
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Affiliation(s)
- Laïla Giordano
- Université Côte d'Azur, INRAE, CNRS, UMR1355‐7254, ISASophia AntipolisFrance
| | - Marion Schimmerling
- Université Côte d'Azur, INRAE, CNRS, UMR1355‐7254, ISASophia AntipolisFrance
| | - Franck Panabières
- Université Côte d'Azur, INRAE, CNRS, UMR1355‐7254, ISASophia AntipolisFrance
| | - Valérie Allasia
- Université Côte d'Azur, INRAE, CNRS, UMR1355‐7254, ISASophia AntipolisFrance
| | - Harald Keller
- Université Côte d'Azur, INRAE, CNRS, UMR1355‐7254, ISASophia AntipolisFrance
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Direito I, Gomes D, Monteiro FL, Carneiro I, Lobo J, Henrique R, Jerónimo C, Helguero LA. The Clinicopathological Significance of BiP/GRP-78 in Breast Cancer: A Meta-Analysis of Public Datasets and Immunohistochemical Detection. Curr Oncol 2022; 29:9066-9087. [PMID: 36547124 PMCID: PMC9777260 DOI: 10.3390/curroncol29120710] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2022] [Revised: 11/15/2022] [Accepted: 11/17/2022] [Indexed: 11/24/2022] Open
Abstract
The endoplasmic reticulum chaperone BiP (also known as GRP-78 or HSPA5) maintains protein folding to allow cell proliferation and survival and has been implicated in carcinogenesis, tumor progression, and therapy resistance. BiP's association with clinical factors and prognostic potential in breast cancer remains unclear. In this work, three types of analysis were conducted to improve the knowledge of BiP's clinicopathological potential: (1) analysis of publicly available RNA-seq and proteomics datasets stratified as high and low quartiles; (2) a systematic review and meta-analysis of immunohistochemical detection of BIP; (3) confirmation of findings by BiP immunohistochemical detection in two luminal-like breast cancer small cohorts of paired samples (pre- vs. post-endocrine therapy, and primary pre- vs. metastasis post-endocrine therapy). The TCGA PanCancer dataset and CPTAC showed groups with high BiP mRNA and protein associated with HER2, basal-like subtypes, and higher immune scores. The meta-analysis of BiP immunohistochemistry disclosed an association between higher BiP positivity and reduced relapse-free survival. BiP immunohistochemistry confirmed increased BiP expression in metastasis, an association of BiP positivity with HER2 expression, and nuclear BiP localization with higher a tumor stage and poor outcome. Therefore, three independent approaches showed that BiP protein is associated with worse outcomes and holds prognostic potential for breast cancer.
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Affiliation(s)
- Inês Direito
- iBiMED—Institute of Biomedicine, University of Aveiro, Agra do Crasto 30, 3810-193 Aveiro, Portugal
| | - Daniela Gomes
- iBiMED—Institute of Biomedicine, University of Aveiro, Agra do Crasto 30, 3810-193 Aveiro, Portugal
| | - Fátima Liliana Monteiro
- iBiMED—Institute of Biomedicine, University of Aveiro, Agra do Crasto 30, 3810-193 Aveiro, Portugal
| | - Isa Carneiro
- Department of Pathology, Portuguese Oncology Institute of Porto (IPO Porto), R. Dr. António Bernardino de Almeida, 4200-072 Porto, Portugal
- Cancer Biology and Epigenetics Group, IPO Porto Research Center (CI-IPOP), Portuguese Oncology Institute of Porto (IPO Porto)/Porto Comprehensive Cancer Centre (Porto.CCC) & RISE@CI-IPOP (Health Research Network), R. Dr. António Bernardino de Almeida, 4200-072 Porto, Portugal
| | - João Lobo
- Department of Pathology, Portuguese Oncology Institute of Porto (IPO Porto), R. Dr. António Bernardino de Almeida, 4200-072 Porto, Portugal
- Cancer Biology and Epigenetics Group, IPO Porto Research Center (CI-IPOP), Portuguese Oncology Institute of Porto (IPO Porto)/Porto Comprehensive Cancer Centre (Porto.CCC) & RISE@CI-IPOP (Health Research Network), R. Dr. António Bernardino de Almeida, 4200-072 Porto, Portugal
- Department of Pathology and Molecular Immunology, School of Medicine & Biomedical Sciences, University of Porto (ICBAS-UP), Rua Jorge Viterbo Ferreira 228, 4050-513 Porto, Portugal
| | - Rui Henrique
- Department of Pathology, Portuguese Oncology Institute of Porto (IPO Porto), R. Dr. António Bernardino de Almeida, 4200-072 Porto, Portugal
- Cancer Biology and Epigenetics Group, IPO Porto Research Center (CI-IPOP), Portuguese Oncology Institute of Porto (IPO Porto)/Porto Comprehensive Cancer Centre (Porto.CCC) & RISE@CI-IPOP (Health Research Network), R. Dr. António Bernardino de Almeida, 4200-072 Porto, Portugal
- Department of Pathology and Molecular Immunology, School of Medicine & Biomedical Sciences, University of Porto (ICBAS-UP), Rua Jorge Viterbo Ferreira 228, 4050-513 Porto, Portugal
| | - Carmen Jerónimo
- Department of Pathology, Portuguese Oncology Institute of Porto (IPO Porto), R. Dr. António Bernardino de Almeida, 4200-072 Porto, Portugal
- Cancer Biology and Epigenetics Group, IPO Porto Research Center (CI-IPOP), Portuguese Oncology Institute of Porto (IPO Porto)/Porto Comprehensive Cancer Centre (Porto.CCC) & RISE@CI-IPOP (Health Research Network), R. Dr. António Bernardino de Almeida, 4200-072 Porto, Portugal
- Department of Pathology and Molecular Immunology, School of Medicine & Biomedical Sciences, University of Porto (ICBAS-UP), Rua Jorge Viterbo Ferreira 228, 4050-513 Porto, Portugal
| | - Luisa Alejandra Helguero
- iBiMED—Institute of Biomedicine, University of Aveiro, Agra do Crasto 30, 3810-193 Aveiro, Portugal
- Correspondence: ; Tel.: +35-1-234-247-240 (ext. 22112)
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Liang D, Yu J, Song T, Zhang R, Du Y, Yu M, Cao H, Pan X, Qiao J, Liu Y, Qi Z, Liu Y. Genome-Wide Prediction and Analysis of Oryza Species NRP Genes in Rice Blast Resistance. Int J Mol Sci 2022; 23:ijms231911967. [PMID: 36233270 PMCID: PMC9569735 DOI: 10.3390/ijms231911967] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2022] [Revised: 09/26/2022] [Accepted: 10/03/2022] [Indexed: 11/26/2022] Open
Abstract
Members of the N-rich proteins (NRPs) gene family play important roles in the plant endoplasmic reticulum stress in response, which can be triggered by plant pathogens’ infection. Previous studies of the NRP gene family have been limited to only a few plants, such as soybean and Arabidopsis thaliana. Thus, their evolutionary characteristics in the Oryza species and biological functions in rice defense against the pathogenic fungus Magnaporthe oryzae have remained unexplored. In the present study, we demonstrated that the NRP genes family may have originated in the early stages of plant evolution, and that they have been strongly conserved during the evolution of the Oryza species. Domain organization of NRPs was found to be highly conserved within but not between subgroups. OsNRP1, an NRP gene in the Oryza sativa japonica group, was specifically up-regulated during the early stages of rice-M. oryzae interactions-inhibited M. oryzae infection. Predicted protein-protein interaction networks and transcription-factor binding sites revealed a candidate interactor, bZIP50, which may be involved in OsNRP1-mediated rice resistance against M. oryzae infection. Taken together, our results established a basis for future studies of the NRP gene family and provided molecular insights into rice immune responses to M. oryzae.
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Affiliation(s)
| | | | | | | | - Yan Du
- Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences (JAAS), Nanjing 210014, China
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7
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Berka M, Kopecká R, Berková V, Brzobohatý B, Černý M. Regulation of heat shock proteins 70 and their role in plant immunity. JOURNAL OF EXPERIMENTAL BOTANY 2022; 73:1894-1909. [PMID: 35022724 PMCID: PMC8982422 DOI: 10.1093/jxb/erab549] [Citation(s) in RCA: 25] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2021] [Accepted: 12/10/2021] [Indexed: 05/03/2023]
Abstract
Heat shock proteins 70 (HSP70s) are steadily gaining more attention in the field of plant biotic interactions. Though their regulation and activity in plants are much less well characterized than are those of their counterparts in mammals, accumulating evidence indicates that the role of HSP70-mediated defense mechanisms in plant cells is indispensable. In this review, we summarize current knowledge of HSP70 post-translational control in plants. We comment on the phytohormonal regulation of HSP70 expression and protein abundance, and identify a prominent role for cytokinin in HSP70 control. We outline HSP70s' subcellular localizations, chaperone activity, and chaperone-mediated protein degradation. We focus on the role of HSP70s in plant pathogen-associated molecular pattern-triggered immunity and effector-triggered immunity, and discuss the contribution of different HSP70 subfamilies to plant defense against pathogens.
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Affiliation(s)
- Miroslav Berka
- Department of Molecular Biology and Radiobiology, Faculty of AgriSciences, Mendel University in Brno, CZ-61300 Brno, Czech Republic
| | - Romana Kopecká
- Department of Molecular Biology and Radiobiology, Faculty of AgriSciences, Mendel University in Brno, CZ-61300 Brno, Czech Republic
| | - Veronika Berková
- Department of Molecular Biology and Radiobiology, Faculty of AgriSciences, Mendel University in Brno, CZ-61300 Brno, Czech Republic
| | - Břetislav Brzobohatý
- Department of Molecular Biology and Radiobiology, Faculty of AgriSciences, Mendel University in Brno, CZ-61300 Brno, Czech Republic
| | - Martin Černý
- Department of Molecular Biology and Radiobiology, Faculty of AgriSciences, Mendel University in Brno, CZ-61300 Brno, Czech Republic
- Correspondence:
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8
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Giordano L, Allasia V, Cremades A, Hok S, Panabières F, Bailly-Maître B, Keller H. A plant receptor domain with functional analogies to animal malectin disables ER stress responses upon infection. iScience 2022; 25:103877. [PMID: 35243239 PMCID: PMC8861646 DOI: 10.1016/j.isci.2022.103877] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2019] [Revised: 01/06/2022] [Accepted: 02/02/2022] [Indexed: 11/16/2022] Open
Abstract
Malectins from the oligosaccharyltransferase (OST) complex in the endoplasmic reticulum (ER) of animal cells are involved in ER quality control and contribute to the Unfolded Protein Response (UPR). Malectins are not found in plant cells, but malectin-like domains (MLDs) are constituents of many membrane-bound receptors. In Arabidopsis thaliana, the MLD-containing receptor IOS1 promotes successful infection by filamentous plant pathogens. We show that the MLD of its exodomain retains IOS1 in the ER of plant cells and attenuates the infection-induced UPR. Expression of the MLD in the ios1-1 knockout background is sufficient to complement infection-related phenotypes of the mutant, such as increased UPR and reduced disease susceptibility. IOS1 interacts with the ER membrane-associated ribophorin HAP6 from the OST complex, and hap6 mutants show decreased pathogen-responsive UPR and increased disease susceptibility. Altogether, this study revealed a previously uncharacterized role of a plant receptor domain in the regulation of ER stress during infection. The Unfolded Protein Response (UPR) in plants impairs downy mildew infection The pathogen exploits a molecular mechanism of the host cell to promote disease The extracellular domain of the receptor IOS1 attenuates the pathogen-induced UPR IOS1 interacts with the ribophorin HAP6 in the ER to fine-tune the UPR
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9
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Quadros IPS, Madeira NN, Loriato VAP, Saia TFF, Silva JC, Soares FAF, Carvalho JR, Reis PAB, Fontes EPB, Clarindo WR, Fontes RLF. Cadmium-mediated toxicity in plant cells is associated with the DCD/NRP-mediated cell death response. PLANT, CELL & ENVIRONMENT 2022; 45:556-571. [PMID: 34719793 DOI: 10.1111/pce.14218] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/23/2020] [Revised: 09/08/2021] [Accepted: 09/16/2021] [Indexed: 05/13/2023]
Abstract
Cadmium (Cd2+ ) is highly harmful to plant growth. Although Cd2+ induces programmed cell death (PCD) in plant cells, Cd2+ stress in whole plants during later developmental stages and the mechanism underlying Cd2+ -mediated toxicity are poorly understood. Here, we showed that Cd2+ limits plant growth, causes intense redness in leaf vein, leaf yellowing, and chlorosis during the R1 reproductive stage of soybean (Glycine max). These symptoms were associated with Cd2+ -induced PCD, as Cd2+ -stressed soybean leaves displayed decreased number of nuclei, enhanced cell death, DNA damage, and caspase 1 activity compared to unstressed leaves. Accordingly, Cd2+ -induced NRPs, GmNAC81, GmNAC30 and VPE, the DCD/NRP-mediated cell death signalling components, which execute PCD via caspase 1-like VPE activity. Furthermore, overexpression of the positive regulator of this cell death signalling GmNAC81 enhanced sensitivity to Cd2+ stress and intensified the hallmarks of Cd2+ -mediated PCD. GmNAC81 overexpression enhanced Cd2+ -induced H2 O2 production, cell death, DNA damage, and caspase-1-like VPE expression. Conversely, BiP overexpression negatively regulated the NRPs/GmNACs/VPE signalling module, conferred tolerance to Cd2+ stress and reduced Cd2+ -mediated cell death. Collectively, our data indicate that Cd2+ induces PCD in plants via activation of the NRP/GmNAC/VPE regulatory circuit that links developmentally and stress-induced cell death.
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Affiliation(s)
- Iana Pedro Silva Quadros
- National Institute of Science and Technology in Plant-Pest Interactions, Bioagro, Universidade Federal de Viçosa, Viçosa, Brazil
| | | | - Virgílio Adriano Pereira Loriato
- National Institute of Science and Technology in Plant-Pest Interactions, Bioagro, Universidade Federal de Viçosa, Viçosa, Brazil
- Biochemistry and Molecular Biology Department/BIOAGRO, Universidade Federal de Viçosa, Viçosa, Brazil
| | - Thaina Fernanda Fillietaz Saia
- National Institute of Science and Technology in Plant-Pest Interactions, Bioagro, Universidade Federal de Viçosa, Viçosa, Brazil
| | - Jéssica Coutinho Silva
- Cytogenetics and Cytometry Laboratory, Department of General Biology, Universidade Federal de Viçosa, Viçosa, Brazil
| | | | | | - Pedro Augusto Braga Reis
- National Institute of Science and Technology in Plant-Pest Interactions, Bioagro, Universidade Federal de Viçosa, Viçosa, Brazil
- Biochemistry and Molecular Biology Department/BIOAGRO, Universidade Federal de Viçosa, Viçosa, Brazil
| | - Elizabeth P B Fontes
- National Institute of Science and Technology in Plant-Pest Interactions, Bioagro, Universidade Federal de Viçosa, Viçosa, Brazil
- Biochemistry and Molecular Biology Department/BIOAGRO, Universidade Federal de Viçosa, Viçosa, Brazil
| | - Wellington Ronildo Clarindo
- Cytogenetics and Cytometry Laboratory, Department of General Biology, Universidade Federal de Viçosa, Viçosa, Brazil
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Endoplasmic Reticulum Stress and Unfolded Protein Response Signaling in Plants. Int J Mol Sci 2022; 23:ijms23020828. [PMID: 35055014 PMCID: PMC8775474 DOI: 10.3390/ijms23020828] [Citation(s) in RCA: 25] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2021] [Revised: 01/07/2022] [Accepted: 01/11/2022] [Indexed: 02/01/2023] Open
Abstract
Plants are sensitive to a variety of stresses that cause various diseases throughout their life cycle. However, they have the ability to cope with these stresses using different defense mechanisms. The endoplasmic reticulum (ER) is an important subcellular organelle, primarily recognized as a checkpoint for protein folding. It plays an essential role in ensuring the proper folding and maturation of newly secreted and transmembrane proteins. Different processes are activated when around one-third of newly synthesized proteins enter the ER in the eukaryote cells, such as glycosylation, folding, and/or the assembling of these proteins into protein complexes. However, protein folding in the ER is an error-prone process whereby various stresses easily interfere, leading to the accumulation of unfolded/misfolded proteins and causing ER stress. The unfolded protein response (UPR) is a process that involves sensing ER stress. Many strategies have been developed to reduce ER stress, such as UPR, ER-associated degradation (ERAD), and autophagy. Here, we discuss the ER, ER stress, UPR signaling and various strategies for reducing ER stress in plants. In addition, the UPR signaling in plant development and different stresses have been discussed.
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11
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Lima KRP, Cavalcante FLP, Paula-Marinho SDO, Pereira IMC, Lopes LDS, Nunes JVS, Coutinho ÍAC, Gomes-Filho E, Carvalho HHD. Metabolomic profiles exhibit the influence of endoplasmic reticulum stress on sorghum seedling growth over time. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2022; 170:192-205. [PMID: 34902782 DOI: 10.1016/j.plaphy.2021.11.041] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2021] [Revised: 11/25/2021] [Accepted: 11/27/2021] [Indexed: 06/14/2023]
Abstract
Environmental stresses disturb the endoplasmic reticulum (ER) protein folding. However, primary metabolic responses induced by ER stress remain unclear. Thus, we investigated the morphophysiological and metabolomic changes under ER stress, induced by dithiothreitol (DTT) and tunicamycin (TM) treatments in sorghum seedlings from 24 to 96 h. The ER stress caused lipid peroxidation and increased the expression of SbBiP1, SbPDI, and SbIRE1. The development impairment was more pronounced in roots than in shoots as distinct metabolomic profiles were observed. DTT decreased root length, lateral roots, and root hair, while TM decreased mainly the root length. At 24 h, under ER stresses, the glutamic acid and o-acetyl-serine were biomarkers in the shoots. While homoserine, pyroglutamic acid, and phosphoric acid were candidates for roots. At the latest time (96 h), kestose and galactinol were key metabolites for shoots under DTT and TM, respectively. In roots, palatinose, trehalose, and alanine were common markers for DTT and TM late exposure. The accumulation of sugars such as arabinose and kestose occurred mainly in roots in the presence of DTT at a later time, which also inhibited glycolysis and the tricarboxylic acid cycle (TCA). Amino acid metabolism was induced, which also contributed TCA components decreasing, such as succinate in shoots and citrate in roots. Thus, our study may provide new insights into primary metabolism modulated by ER stress and seedling development.
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Affiliation(s)
- Karollyny Roger Pereira Lima
- Department of Biochemistry and Molecular Biology, Federal University of Ceará, CEP-60440-554, Fortaleza, CE, Brazil
| | | | | | - Isabelle Mary Costa Pereira
- Department of Biochemistry and Molecular Biology, Federal University of Ceará, CEP-60440-554, Fortaleza, CE, Brazil
| | - Lineker de Sousa Lopes
- Department of Biochemistry and Molecular Biology, Federal University of Ceará, CEP-60440-554, Fortaleza, CE, Brazil
| | | | | | - Enéas Gomes-Filho
- Department of Biochemistry and Molecular Biology, Federal University of Ceará, CEP-60440-554, Fortaleza, CE, Brazil
| | - Humberto Henrique de Carvalho
- Department of Biochemistry and Molecular Biology, Federal University of Ceará, CEP-60440-554, Fortaleza, CE, Brazil.
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12
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Simoni EB, Oliveira CC, Fraga OT, Reis PAB, Fontes EPB. Cell Death Signaling From Endoplasmic Reticulum Stress: Plant-Specific and Conserved Features. FRONTIERS IN PLANT SCIENCE 2022; 13:835738. [PMID: 35185996 PMCID: PMC8850647 DOI: 10.3389/fpls.2022.835738] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2021] [Accepted: 01/10/2022] [Indexed: 05/06/2023]
Abstract
The endoplasmic reticulum (ER) stress response is triggered by any condition that disrupts protein folding and promotes the accumulation of unfolded proteins in the lumen of the organelle. In eukaryotic cells, the evolutionarily conserved unfolded protein response is activated to clear unfolded proteins and restore ER homeostasis. The recovery from ER stress is accomplished by decreasing protein translation and loading into the organelle, increasing the ER protein processing capacity and ER-associated protein degradation activity. However, if the ER stress persists and cannot be reversed, the chronically prolonged stress leads to cellular dysfunction that activates cell death signaling as an ultimate attempt to survive. Accumulating evidence implicates ER stress-induced cell death signaling pathways as significant contributors for stress adaptation in plants, making modulators of ER stress pathways potentially attractive targets for stress tolerance engineering. Here, we summarize recent advances in understanding plant-specific molecular mechanisms that elicit cell death signaling from ER stress. We also highlight the conserved features of ER stress-induced cell death signaling in plants shared by eukaryotic cells.
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13
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Yang Y, Liu X, Zhang W, Qian Q, Zhou L, Liu S, Li Y, Hou X. Stress response proteins NRP1 and NRP2 are pro-survival factors that inhibit cell death during ER stress. PLANT PHYSIOLOGY 2021; 187:1414-1427. [PMID: 34618053 PMCID: PMC8566283 DOI: 10.1093/plphys/kiab335] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2021] [Accepted: 06/24/2021] [Indexed: 05/12/2023]
Abstract
Environmental stresses cause an increased number of unfolded or misfolded proteins to accumulate in the endoplasmic reticulum (ER), resulting in ER stress. To restore ER homeostasis and survive, plants initiate an orchestrated signaling pathway known as the unfolded protein response (UPR). Asparagine-rich protein (NRP) 1 and NRP2, two homologous proteins harboring a Development and Cell Death domain, are associated with various stress responses in Arabidopsis (Arabidopsis thaliana), but the relevant molecular mechanism remains obscure. Here, we show that NRP1 and NRP2 act as key pro-survival factors during the ER stress response and that they inhibit cell death. Loss-of-function of NRP1 and NRP2 results in decreased tolerance to the ER stress inducer tunicamycin (TM), accelerating cell death. NRP2 is constitutively expressed while NRP1 is induced in plants under ER stress. In Arabidopsis, basic leucine zipper protein (bZIP) 28 and bZIP60 are important transcription factors in the UPR that activates the expression of many ER stress-related genes. Notably, under ER stress, bZIP60 activates NRP1 by directly binding to the UPRE-I element in the NRP1 promoter. These findings reveal a pro-survival strategy in plants wherein the bZIP60-NRPs cascade suppresses cell death signal transmission, improving survival under adverse conditions.
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Affiliation(s)
- Yuhua Yang
- Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement & Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China
| | - Xu Liu
- Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement & Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China
- Center of Economic Botany, Core Botanical Gardens, Chinese Academy of Sciences, Guangzhou 510650, China
| | - Wenbin Zhang
- Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement & Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China
- University of the Chinese Academy of Sciences, Beijing 100049, China
| | - Qian Qian
- Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement & Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China
| | - Limeng Zhou
- Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement & Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China
- University of the Chinese Academy of Sciences, Beijing 100049, China
| | - Shu Liu
- Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement & Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China
- University of the Chinese Academy of Sciences, Beijing 100049, China
| | - Yuge Li
- Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement & Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China
| | - Xingliang Hou
- Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement & Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China
- Center of Economic Botany, Core Botanical Gardens, Chinese Academy of Sciences, Guangzhou 510650, China
- University of the Chinese Academy of Sciences, Beijing 100049, China
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14
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Czékus Z, Iqbal N, Pollák B, Martics A, Ördög A, Poór P. Role of ethylene and light in chitosan-induced local and systemic defence responses of tomato plants. JOURNAL OF PLANT PHYSIOLOGY 2021; 263:153461. [PMID: 34217837 DOI: 10.1016/j.jplph.2021.153461] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2021] [Revised: 06/02/2021] [Accepted: 06/17/2021] [Indexed: 06/13/2023]
Abstract
Plant defence responses can be triggered by the application of elicitors for example chitosan (β-1,4-linked glucosamine; CHT). It is well-known that CHT induces rapid, local production of reactive oxygen species (ROS) and nitric oxide (NO) resulting in fast stomatal closure. Systemic defence responses are based primarily on phytohormones such as ethylene (ET) and salicylic acid (SA), moreover on the expression of hormone-mediated defence genes and proteins. At the same time, these responses can be dependent also on external factors, such as light but its role was less-investigated. Based on our result in intact tomato plants (Solanum lycopersicum L.), CHT treatment not only induced significant ET emission and stomatal closure locally but also promoted significant production of superoxide which was also detectable in the distal, systemic leaves. However, these changes in ET and superoxide accumulation were detected only in wild type (WT) plants kept in light and were inhibited under darkness as well as in ET receptor Never ripe (Nr) mutants suggesting pivotal importance of ET and light in inducing resistance both locally and systemically upon CHT. Interestingly, CHT-induced NO production was mostly independent of ET or light. At the same time, expression of Pathogenesis-related 3 (PR3) was increased locally in both genotypes in the light and in WT leaves under darkness. This was also observed in distal leaves of WT plants. The CHT-induced endoplasmic reticulum (ER) stress, as well as unfolded protein response (UPR) were examined for the first time, via analysis of the lumenal binding protein (BiP). Whereas local expression of BiP was not dependent on the availability of light or ET, systemically it was mediated by ET.
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Affiliation(s)
- Zalán Czékus
- Department of Plant Biology, University of Szeged, H-6726 Szeged, Közép Fasor 52, Hungary; Doctoral School of Biology, University of Szeged, Szeged, Hungary.
| | - Nadeem Iqbal
- Department of Plant Biology, University of Szeged, H-6726 Szeged, Közép Fasor 52, Hungary; Doctoral School of Environmental Sciences, University of Szeged, Szeged, Hungary.
| | - Boglárka Pollák
- Department of Plant Biology, University of Szeged, H-6726 Szeged, Közép Fasor 52, Hungary.
| | - Atina Martics
- Department of Plant Biology, University of Szeged, H-6726 Szeged, Közép Fasor 52, Hungary.
| | - Attila Ördög
- Department of Plant Biology, University of Szeged, H-6726 Szeged, Közép Fasor 52, Hungary.
| | - Péter Poór
- Department of Plant Biology, University of Szeged, H-6726 Szeged, Közép Fasor 52, Hungary.
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15
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Fraga OT, de Melo BP, Quadros IPS, Reis PAB, Fontes EPB. Senescence-Associated Glycine max ( Gm) NAC Genes: Integration of Natural and Stress-Induced Leaf Senescence. Int J Mol Sci 2021; 22:8287. [PMID: 34361053 PMCID: PMC8348617 DOI: 10.3390/ijms22158287] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2021] [Revised: 07/20/2021] [Accepted: 07/24/2021] [Indexed: 11/30/2022] Open
Abstract
Leaf senescence is a genetically regulated developmental process that can be triggered by a variety of internal and external signals, including hormones and environmental stimuli. Among the senescence-associated genes controlling leaf senescence, the transcriptional factors (TFs) comprise a functional class that is highly active at the onset and during the progression of leaf senescence. The plant-specific NAC (NAM, ATAF, and CUC) TFs are essential for controlling leaf senescence. Several members of Arabidopsis AtNAC-SAGs are well characterized as players in elucidated regulatory networks. However, only a few soybean members of this class display well-known functions; knowledge about their regulatory circuits is still rudimentary. Here, we describe the expression profile of soybean GmNAC-SAGs upregulated by natural senescence and their functional correlation with putative AtNAC-SAGs orthologs. The mechanisms and the regulatory gene networks underlying GmNAC081- and GmNAC030-positive regulation in leaf senescence are discussed. Furthermore, new insights into the role of GmNAC065 as a negative senescence regulator are presented, demonstrating extraordinary functional conservation with the Arabidopsis counterpart. Finally, we describe a regulatory circuit which integrates a stress-induced cell death program with developmental leaf senescence via the NRP-NAC-VPE signaling module.
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Affiliation(s)
- Otto Teixeira Fraga
- Biochemistry and Molecular Biology Department, Universidade Federal de Viçosa, Viçosa 36570.000, MG, Brazil; (O.T.F.); (B.P.d.M.); (I.P.S.Q.); (P.A.B.R.)
- National Institute of Science and Technology in Plant-Pest Interactions, INCTIPP–BIOAGRO, Universidade Federal de Viçosa, Viçosa 36570.000, MG, Brazil
| | - Bruno Paes de Melo
- Biochemistry and Molecular Biology Department, Universidade Federal de Viçosa, Viçosa 36570.000, MG, Brazil; (O.T.F.); (B.P.d.M.); (I.P.S.Q.); (P.A.B.R.)
- Embrapa Genetic Resources and Biotechnology, Brasília 70770.917, DF, Brazil
| | - Iana Pedro Silva Quadros
- Biochemistry and Molecular Biology Department, Universidade Federal de Viçosa, Viçosa 36570.000, MG, Brazil; (O.T.F.); (B.P.d.M.); (I.P.S.Q.); (P.A.B.R.)
- National Institute of Science and Technology in Plant-Pest Interactions, INCTIPP–BIOAGRO, Universidade Federal de Viçosa, Viçosa 36570.000, MG, Brazil
| | - Pedro Augusto Braga Reis
- Biochemistry and Molecular Biology Department, Universidade Federal de Viçosa, Viçosa 36570.000, MG, Brazil; (O.T.F.); (B.P.d.M.); (I.P.S.Q.); (P.A.B.R.)
- National Institute of Science and Technology in Plant-Pest Interactions, INCTIPP–BIOAGRO, Universidade Federal de Viçosa, Viçosa 36570.000, MG, Brazil
| | - Elizabeth Pacheco Batista Fontes
- Biochemistry and Molecular Biology Department, Universidade Federal de Viçosa, Viçosa 36570.000, MG, Brazil; (O.T.F.); (B.P.d.M.); (I.P.S.Q.); (P.A.B.R.)
- National Institute of Science and Technology in Plant-Pest Interactions, INCTIPP–BIOAGRO, Universidade Federal de Viçosa, Viçosa 36570.000, MG, Brazil
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16
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Rodrigues JM, Coutinho FS, Dos Santos DS, Vital CE, Ramos JRLS, Reis PB, Oliveira MGA, Mehta A, Fontes EPB, Ramos HJO. BiP-overexpressing soybean plants display accelerated hypersensitivity response (HR) affecting the SA-dependent sphingolipid and flavonoid pathways. PHYTOCHEMISTRY 2021; 185:112704. [PMID: 33640683 DOI: 10.1016/j.phytochem.2021.112704] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2020] [Revised: 01/09/2021] [Accepted: 02/09/2021] [Indexed: 06/12/2023]
Abstract
Biotic and abiotic environmental stresses have limited the increase in soybean productivity. Overexpression of the molecular chaperone BiP in transgenic plants has been associated with the response to osmotic stress and drought tolerance by maintaining cellular homeostasis and delaying hypersensitive cell death. Here, we evaluated the metabolic changes in response to the hypersensitivity response (HR) caused by the non-compatible bacteria Pseudomonas syringae pv. tomato in BiP-overexpressing plants. The HR-modified metabolic profiles in BiP-overexpressing plants were significantly distinct from the wild-type untransformed. The transgenic plants displayed a lower abundance of HR-responsive metabolites as amino acids, sugars, carboxylic acids and signal molecules, including p-aminobenzoic acid (PABA) and dihydrosphingosine (DHS), when compared to infected wild-type plants. In contrast, salicylic acid (SA) biosynthetic and signaling pathways were more stimulated in transgenic plants, and both pathogenesis-related genes (PRs) and transcriptional factors controlling the SA pathway were more induced in the BiP-overexpressing lines. Furthermore, the long-chain bases (LCBs) and ceramide biosynthetic pathways showed alterations in gene expression and metabolite abundance. Thus, as a protective pathway against pathogens, HR regulation by sphingolipids and SA may account at least in part by the enhanced resistance of transgenic plants. GmNAC32 transcriptional factor was more induced in the transgenic plants and it has also been reported to regulate flavonoid synthesis in response to SA. In fact, the BiP-overexpressing plants showed an increase in flavonoids, mainly prenylated isoflavones, as precursors for phytoalexins. Our results indicate that the BiP-mediated acceleration in the hypersensitive response may be a target for metabolic engineering of plant resistance against pathogens.
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Affiliation(s)
- Juliano Mendonça Rodrigues
- Laboratory of Enzymology and Biochemistry of Proteins and Peptides, Department of Biochemistry and Molecular Biology, Universidade Federal de Viçosa, UFV, BIOAGRO/INCT-IPP, Viçosa, MG, Brazil
| | - Flaviane Silva Coutinho
- Laboratory of Plant Molecular Biology, Department of Biochemistry and Molecular Biology, Universidade Federal de Viçosa, BIOAGRO/INCT-IPP, Viçosa, MG, Brazil
| | - Danilo Silva Dos Santos
- Laboratory of Plant Molecular Biology, Department of Biochemistry and Molecular Biology, Universidade Federal de Viçosa, BIOAGRO/INCT-IPP, Viçosa, MG, Brazil
| | - Camilo Elber Vital
- Laboratory of Enzymology and Biochemistry of Proteins and Peptides, Department of Biochemistry and Molecular Biology, Universidade Federal de Viçosa, UFV, BIOAGRO/INCT-IPP, Viçosa, MG, Brazil
| | - Juliana Rocha Lopes Soares Ramos
- Laboratory of Enzymology and Biochemistry of Proteins and Peptides, Department of Biochemistry and Molecular Biology, Universidade Federal de Viçosa, UFV, BIOAGRO/INCT-IPP, Viçosa, MG, Brazil
| | - Pedro Braga Reis
- Laboratory of Plant Molecular Biology, Department of Biochemistry and Molecular Biology, Universidade Federal de Viçosa, BIOAGRO/INCT-IPP, Viçosa, MG, Brazil
| | - Maria Goreti Almeida Oliveira
- Laboratory of Enzymology and Biochemistry of Proteins and Peptides, Department of Biochemistry and Molecular Biology, Universidade Federal de Viçosa, UFV, BIOAGRO/INCT-IPP, Viçosa, MG, Brazil
| | - Angela Mehta
- Embrapa Recursos Genéticos e Biotecnologia, CENARGEN, Brasília, DF, Brazil
| | - Elizabeth Pacheco Batista Fontes
- Laboratory of Plant Molecular Biology, Department of Biochemistry and Molecular Biology, Universidade Federal de Viçosa, BIOAGRO/INCT-IPP, Viçosa, MG, Brazil
| | - Humberto Josué Oliveira Ramos
- Laboratory of Enzymology and Biochemistry of Proteins and Peptides, Department of Biochemistry and Molecular Biology, Universidade Federal de Viçosa, UFV, BIOAGRO/INCT-IPP, Viçosa, MG, Brazil; Laboratory of Plant Molecular Biology, Department of Biochemistry and Molecular Biology, Universidade Federal de Viçosa, BIOAGRO/INCT-IPP, Viçosa, MG, Brazil; Núcleo de Análise de Biomoléculas, NuBioMol, Universidade Federal de Viçosa, Viçosa, MG, Brazil.
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17
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Verchot J, Pajerowska-Mukhtar KM. UPR signaling at the nexus of plant viral, bacterial, and fungal defenses. Curr Opin Virol 2020; 47:9-17. [PMID: 33360330 DOI: 10.1016/j.coviro.2020.11.001] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2020] [Revised: 11/13/2020] [Accepted: 11/15/2020] [Indexed: 12/24/2022]
Abstract
In recent years there have been significant advances in our understanding of the ER stress responses in plants that are associated with virus infection, as well as bacterial and fungal diseases. In plants, ER stress induced by virus infection includes several signaling pathways that include the unfolded protein response (UPR) to promote the expression of chaperone proteins for proper protein folding. Understanding how facets of ER stress signaling broadly engage in pathogen responses, as well as those that are specific to virus infection is important to distinguishing features essential for broad cellular defenses and processes that may be specifically linked to viral infectivity and disease.
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Affiliation(s)
- Jeanmarie Verchot
- Department of Plant Pathology and Microbiology, Texas A&M University, College Station, TX 77845, USA..
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18
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Ferreira DO, Fraga OT, Pimenta MR, Caetano HDN, Machado JPB, Carpinetti PA, Brustolini OJB, Quadros IPS, Reis PAB, Fontes EPB. GmNAC81 Inversely Modulates Leaf Senescence and Drought Tolerance. Front Genet 2020; 11:601876. [PMID: 33329747 PMCID: PMC7732657 DOI: 10.3389/fgene.2020.601876] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2020] [Accepted: 10/26/2020] [Indexed: 01/02/2023] Open
Abstract
Glycine max NAC81 (GmNAC81) is a downstream effector of the DCD/NRP-mediated cell death signaling, which interacts with GmNAC30 to fully induce the caspase 1-like vacuolar processing enzyme (VPE) expression, the executioner of the cell death program. GmNAC81 has been previously shown to positively modulate leaf senescence via the NRP/GmNAC81/VPE signaling module. Here, we examined the transcriptome induced by GmNAC81 overexpression and leaf senescence and showed that GmNAC81 further modulates leaf senescence by regulating an extensive repertoire of functionally characterized senescence-associated genes (SAGs). Because the NRP/GmNAC81/VPE signaling circuit also relays stress-induced cell death signals, we examined the effect of GmNAC81 overexpression in drought responses. Enhanced GmNAC81 expression in the transgenic lines increased sensitivity to water deprivation. Under progressive drought, the GmNAC81-overexpressing lines displayed severe leaf wilting, a larger and faster decline in leaf Ψw, relative water content (RWC), photosynthesis rate, stomatal conductance, and transpiration rate, in addition to higher Ci/Ca and lower Fm/Fv ratios compared to the BR16 control line. Collectively, these results indicate that the photosynthetic activity and apparatus were more affected by drought in the transgenic lines. Consistent with hypersensitivity to drought, chlorophyll loss, and lipid peroxidation were higher in the GmNAC81-overexpressing lines than in BR16 under dehydration. In addition to inducing VPE expression, GmNAC81 overexpression uncovered the regulation of typical drought-responsive genes. In particular, key regulators and effectors of ABA signaling were suppressed by GmNAC81 overexpression. These results suggest that GmNAC81 may negatively control drought tolerance not only via VPE activation but also via suppression of ABA signaling.
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Affiliation(s)
- Dalton O Ferreira
- National Institute of Science and Technology in Plant-Pest Interactions, Bioagro, Universidade Federal de Viçosa, Viçosa, Brazil
| | - Otto T Fraga
- National Institute of Science and Technology in Plant-Pest Interactions, Bioagro, Universidade Federal de Viçosa, Viçosa, Brazil.,Department of Biochemistry and Molecular Biology/BIOAGRO, Universidade Federal de Viçosa, Viçosa, Brazil
| | - Maiana R Pimenta
- Núcleo de Graduação de Agronomia, Universidade Federal de Sergipe, Nossa Senhora da Glória, Brazil
| | - Hanna D N Caetano
- National Institute of Science and Technology in Plant-Pest Interactions, Bioagro, Universidade Federal de Viçosa, Viçosa, Brazil.,Department of Biochemistry and Molecular Biology/BIOAGRO, Universidade Federal de Viçosa, Viçosa, Brazil
| | | | - Paola A Carpinetti
- National Institute of Science and Technology in Plant-Pest Interactions, Bioagro, Universidade Federal de Viçosa, Viçosa, Brazil
| | | | - Iana P S Quadros
- National Institute of Science and Technology in Plant-Pest Interactions, Bioagro, Universidade Federal de Viçosa, Viçosa, Brazil
| | - Pedro A B Reis
- National Institute of Science and Technology in Plant-Pest Interactions, Bioagro, Universidade Federal de Viçosa, Viçosa, Brazil.,Department of Biochemistry and Molecular Biology/BIOAGRO, Universidade Federal de Viçosa, Viçosa, Brazil
| | - Elizabeth P B Fontes
- National Institute of Science and Technology in Plant-Pest Interactions, Bioagro, Universidade Federal de Viçosa, Viçosa, Brazil.,Department of Biochemistry and Molecular Biology/BIOAGRO, Universidade Federal de Viçosa, Viçosa, Brazil
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19
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D'Alessandro S, Beaugelin I, Havaux M. Tanned or Sunburned: How Excessive Light Triggers Plant Cell Death. MOLECULAR PLANT 2020; 13:1545-1555. [PMID: 32992028 DOI: 10.1016/j.molp.2020.09.023] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/25/2020] [Revised: 08/23/2020] [Accepted: 09/24/2020] [Indexed: 06/11/2023]
Abstract
Plants often encounter light intensities exceeding the capacity of photosynthesis (excessive light) mainly due to biotic and abiotic factors, which lower CO2 fixation and reduce light energy sinks. Under excessive light, the photosynthetic electron transport chain generates damaging molecules, hence leading to photooxidative stress and eventually to cell death. In this review, we summarize the mechanisms linking the excessive absorption of light energy in chloroplasts to programmed cell death in plant leaves. We highlight the importance of reactive carbonyl species generated by lipid photooxidation, their detoxification, and the integrating role of the endoplasmic reticulum in the adoption of phototolerance or cell-death pathways. Finally, we invite the scientific community to standardize the conditions of excessive light treatments.
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Affiliation(s)
- Stefano D'Alessandro
- Aix-Marseille University, CEA, CNRS, UMR7265, BIAM, Institute of Biosciences and Biotechnologies of Aix Marseille, 13108 Saint-Paul-lez-Durance, France.
| | - Inès Beaugelin
- Singapore-CEA Alliance for Research in Circular Economy (SCARCE), School of Chemical and Biomedical Engineering, 62 Nanyang Drive, Singapore 637459, Republic of Singapore
| | - Michel Havaux
- Aix-Marseille University, CEA, CNRS, UMR7265, BIAM, Institute of Biosciences and Biotechnologies of Aix Marseille, 13108 Saint-Paul-lez-Durance, France.
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20
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Herath V, Gayral M, Adhikari N, Miller R, Verchot J. Genome-wide identification and characterization of Solanum tuberosum BiP genes reveal the role of the promoter architecture in BiP gene diversity. Sci Rep 2020; 10:11327. [PMID: 32647371 PMCID: PMC7347581 DOI: 10.1038/s41598-020-68407-2] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2019] [Accepted: 06/18/2020] [Indexed: 12/22/2022] Open
Abstract
The endoplasmic reticulum (ER) immunoglobulin binding proteins (BiPs) are molecular chaperones involved in normal protein maturation and refolding malformed proteins through the unfolded protein response (UPR). Plant BiPs belong to a multi-gene family contributing to development, immunity, and responses to environmental stresses. This study identified three BiP homologs in the Solanum tuberosum (potato) genome using phylogenetic, amino acid sequence, 3-D protein modeling, and gene structure analysis. These analyses revealed that StBiP1 and StBiP2 grouped with AtBiP2, whereas StBiP3 grouped with AtBiP3. While the protein sequences and folding structures are highly similar, these StBiPs are distinguishable by their expression patterns in different tissues and in response to environmental stressors such as treatment with heat, chemicals, or virus elicitors of UPR. Ab initio promoter analysis revealed that potato and Arabidopsis BiP1 and BiP2 promoters were highly enriched with cis-regulatory elements (CREs) linked to developmental processes, whereas BiP3 promoters were enriched with stress related CREs. The frequency and linear distribution of these CREs produced two phylogenetic branches that further resolve the groups identified through gene phylogeny and exon/intron phase analysis. These data reveal that the CRE architecture of BiP promoters potentially define their spatio-temporal expression patterns under developmental and stress related cues.
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Affiliation(s)
- Venura Herath
- Texas A&M Agrilife Center in Dallas, Dallas, TX, 77953, USA.,Department of Plant Pathology and Microbiology, Institute for Plant Genomics and Biotechnology, Texas A&M University, College Station, TX, 77802, USA.,Department of Agriculture Biology, Faculty of Agriculture, University of Peradeniya, Peradeniya, 20400, Sri Lanka
| | - Mathieu Gayral
- Texas A&M Agrilife Center in Dallas, Dallas, TX, 77953, USA
| | - Nirakar Adhikari
- Department of Biochemistry and Molecular Biology, Oklahoma State University, Stillwater, OK, 77845, USA
| | - Rita Miller
- Department of Biochemistry and Molecular Biology, Oklahoma State University, Stillwater, OK, 77845, USA
| | - Jeanmarie Verchot
- Texas A&M Agrilife Center in Dallas, Dallas, TX, 77953, USA. .,Department of Plant Pathology and Microbiology, Institute for Plant Genomics and Biotechnology, Texas A&M University, College Station, TX, 77802, USA.
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Herath V, Gayral M, Adhikari N, Miller R, Verchot J. Genome-wide identification and characterization of Solanum tuberosum BiP genes reveal the role of the promoter architecture in BiP gene diversity. Sci Rep 2020; 10:11327. [PMID: 32647371 DOI: 10.1101/2020.05.16.098244] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2019] [Accepted: 06/18/2020] [Indexed: 05/24/2023] Open
Abstract
The endoplasmic reticulum (ER) immunoglobulin binding proteins (BiPs) are molecular chaperones involved in normal protein maturation and refolding malformed proteins through the unfolded protein response (UPR). Plant BiPs belong to a multi-gene family contributing to development, immunity, and responses to environmental stresses. This study identified three BiP homologs in the Solanum tuberosum (potato) genome using phylogenetic, amino acid sequence, 3-D protein modeling, and gene structure analysis. These analyses revealed that StBiP1 and StBiP2 grouped with AtBiP2, whereas StBiP3 grouped with AtBiP3. While the protein sequences and folding structures are highly similar, these StBiPs are distinguishable by their expression patterns in different tissues and in response to environmental stressors such as treatment with heat, chemicals, or virus elicitors of UPR. Ab initio promoter analysis revealed that potato and Arabidopsis BiP1 and BiP2 promoters were highly enriched with cis-regulatory elements (CREs) linked to developmental processes, whereas BiP3 promoters were enriched with stress related CREs. The frequency and linear distribution of these CREs produced two phylogenetic branches that further resolve the groups identified through gene phylogeny and exon/intron phase analysis. These data reveal that the CRE architecture of BiP promoters potentially define their spatio-temporal expression patterns under developmental and stress related cues.
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Affiliation(s)
- Venura Herath
- Texas A&M Agrilife Center in Dallas, Dallas, TX, 77953, USA
- Department of Plant Pathology and Microbiology, Institute for Plant Genomics and Biotechnology, Texas A&M University, College Station, TX, 77802, USA
- Department of Agriculture Biology, Faculty of Agriculture, University of Peradeniya, Peradeniya, 20400, Sri Lanka
| | - Mathieu Gayral
- Texas A&M Agrilife Center in Dallas, Dallas, TX, 77953, USA
| | - Nirakar Adhikari
- Department of Biochemistry and Molecular Biology, Oklahoma State University, Stillwater, OK, 77845, USA
| | - Rita Miller
- Department of Biochemistry and Molecular Biology, Oklahoma State University, Stillwater, OK, 77845, USA
| | - Jeanmarie Verchot
- Texas A&M Agrilife Center in Dallas, Dallas, TX, 77953, USA.
- Department of Plant Pathology and Microbiology, Institute for Plant Genomics and Biotechnology, Texas A&M University, College Station, TX, 77802, USA.
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22
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Beaugelin I, Chevalier A, D'Alessandro S, Ksas B, Havaux M. Endoplasmic reticulum-mediated unfolded protein response is an integral part of singlet oxygen signalling in plants. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2020; 102:1266-1280. [PMID: 31975462 DOI: 10.1111/tpj.14700] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/25/2019] [Revised: 01/07/2020] [Accepted: 01/13/2020] [Indexed: 05/19/2023]
Abstract
Singlet oxygen (1 O2 ) is a by-product of photosynthesis that triggers a signalling pathway leading to stress acclimation or to cell death. By analyzing gene expressions in a 1 O2 -overproducing Arabidopsis mutant (ch1) under different light regimes, we show here that the 1 O2 signalling pathway involves the endoplasmic reticulum (ER)-mediated unfolded protein response (UPR). ch1 plants in low light exhibited a moderate activation of UPR genes, in particular bZIP60, and low concentrations of the UPR-inducer tunicamycin enhanced tolerance to photooxidative stress, together suggesting a role for UPR in plant acclimation to low 1 O2 levels. Exposure of ch1 to high light stress ultimately leading to cell death resulted in a marked upregulation of the two UPR branches (bZIP60/IRE1 and bZIP28/bZIP17). Accordingly, mutational suppression of bZIP60 and bZIP28 increased plant phototolerance, and a strong UPR activation by high tunicamycin concentrations promoted high light-induced cell death. Conversely, light acclimation of ch1 to 1 O2 stress put a limitation in the high light-induced expression of UPR genes, except for the gene encoding the BIP3 chaperone, which was selectively upregulated. BIP3 deletion enhanced Arabidopsis photosensitivity while plants treated with a chemical chaperone exhibited enhanced phototolerance. In conclusion, 1 O2 induces the ER-mediated UPR response that fulfils a dual role in high light stress: a moderate UPR, with selective induction of BIP3, is part of the acclimatory response to 1 O2 , and a strong activation of the whole UPR is associated with cell death.
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Affiliation(s)
- Inès Beaugelin
- Aix-Marseille University, CNRS, CEA, 13108, Saint-Paul-lez-Durance, France
| | - Anne Chevalier
- Aix-Marseille University, CNRS, CEA, 13108, Saint-Paul-lez-Durance, France
| | | | - Brigitte Ksas
- Aix-Marseille University, CNRS, CEA, 13108, Saint-Paul-lez-Durance, France
| | - Michel Havaux
- Aix-Marseille University, CNRS, CEA, 13108, Saint-Paul-lez-Durance, France
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23
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Queiroz CSD, Pereira IMC, Lima KRP, Bret RSC, Alves MS, Gomes-Filho E, Carvalho HHD. Combined NaCl and DTT diminish harmful ER-stress effects in the sorghum seedlings CSF 20 variety. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2020; 147:223-234. [PMID: 31874339 DOI: 10.1016/j.plaphy.2019.12.013] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/18/2019] [Revised: 11/27/2019] [Accepted: 12/10/2019] [Indexed: 06/10/2023]
Abstract
Plants have developed mechanisms to avoid harmful effects of Na+ accumulation, such as the signaling pathway of carrier proteins Na+/H+ (NHX) and salt overly sensitive (SOS). Besides, endoplasmic reticulum (ER) could integrate plant cell response. Thus, we aimed to understand the effects of ER homeostasis impairment, and its relationship to salt stress during early stages of the Sorghum bicolor CSF 20 a salt-tolerant variety. Three days old seedlings were challenged with NaCl (0, 50, 75 and 100 mM), dithiothreitol (DTT) at 0, 2.5, 5.0 10.0 mM, and the combined NaCl and DTT treatments. Tunicamycin (TUN) was also used as a second inducer of ER stress in a quantitative PCR, to corroborate with DTT's results. There was no significant change in growth parameters under NaCl treatments. Nevertheless, seedling length, mass and Na+ content were decreased as DTT concentration was increased. Under combined NaCl and DTT treatments, shoot length and fresh and dry masses were maintained at control levels. On the other hand, the levels of Na+ were decreased, in comparison to NaCl treatment. Genes analyzed by qPCR revealed that NaCl was able to induce all of them, except for SbbZIP60, however it was induced under combined stresses. In conclusion, the results indicated that S. bicolor seedlings of CSF 20 variety were tolerant to salt and sensible to ER stress. The combination of both stresses restored the ER homeostasis promoting a decrease of Na+ content via the membrane transporters SbNHX1, SbSOS1, and SbPDI ER-chaperone and the ER sensor SbbZIP60.
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Affiliation(s)
- Cinthia Silva de Queiroz
- Departamento de Bioquímica e Biologia Molecular, Centro de Ciências, Universidade Federal do Ceará, Fortaleza, CE, 60440-554, Brazil.
| | - Isabelle Mary Costa Pereira
- Departamento de Bioquímica e Biologia Molecular, Centro de Ciências, Universidade Federal do Ceará, Fortaleza, CE, 60440-554, Brazil.
| | - Karollyny Roger Pereira Lima
- Departamento de Bioquímica e Biologia Molecular, Centro de Ciências, Universidade Federal do Ceará, Fortaleza, CE, 60440-554, Brazil.
| | - Raissa Souza Caminha Bret
- Departamento de Bioquímica e Biologia Molecular, Centro de Ciências, Universidade Federal do Ceará, Fortaleza, CE, 60440-554, Brazil.
| | - Murilo Siqueira Alves
- Departamento de Bioquímica e Biologia Molecular, Centro de Ciências, Universidade Federal do Ceará, Fortaleza, CE, 60440-554, Brazil.
| | - Enéas Gomes-Filho
- Departamento de Bioquímica e Biologia Molecular, Centro de Ciências, Universidade Federal do Ceará, Fortaleza, CE, 60440-554, Brazil; Departamento de Bioquímica e Biologia Molecular and Instituto Nacional de Ciências e Tecnologia em Salinidade (INCTSal/CNPq), Centro de Ciências, Universidade Federal do Ceará, Fortaleza, CE, 60455-760, Brazil.
| | - Humberto Henrique de Carvalho
- Departamento de Bioquímica e Biologia Molecular, Centro de Ciências, Universidade Federal do Ceará, Fortaleza, CE, 60440-554, Brazil.
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The Multifaceted Roles of Plant Hormone Salicylic Acid in Endoplasmic Reticulum Stress and Unfolded Protein Response. Int J Mol Sci 2019; 20:ijms20235842. [PMID: 31766401 PMCID: PMC6928836 DOI: 10.3390/ijms20235842] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2019] [Revised: 11/18/2019] [Accepted: 11/19/2019] [Indexed: 12/27/2022] Open
Abstract
Different abiotic and biotic stresses lead to the accumulation of unfolded and misfolded proteins in the endoplasmic reticulum (ER), resulting in ER stress. In response to ER stress, cells activate various cytoprotective responses, enhancing chaperon synthesis, protein folding capacity, and degradation of misfolded proteins. These responses of plants are called the unfolded protein response (UPR). ER stress signaling and UPR can be regulated by salicylic acid (SA), but the mode of its action is not known in full detail. In this review, the current knowledge on the multifaceted role of SA in ER stress and UPR is summarized in model plants and crops to gain a better understanding of SA-regulated processes at the physiological, biochemical, and molecular levels.
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25
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Bengoa Luoni S, Astigueta FH, Nicosia S, Moschen S, Fernandez P, Heinz R. Transcription Factors Associated with Leaf Senescence in Crops. PLANTS (BASEL, SWITZERLAND) 2019; 8:E411. [PMID: 31614987 PMCID: PMC6843677 DOI: 10.3390/plants8100411] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/01/2019] [Revised: 08/21/2019] [Accepted: 08/23/2019] [Indexed: 12/13/2022]
Abstract
Leaf senescence is a complex mechanism controlled by multiple genetic and environmental variables. Different crops present a delay in leaf senescence with an important impact on grain yield trough the maintenance of the photosynthetic leaf area during the reproductive stage. Additionally, because of the temporal gap between the onset and phenotypic detection of the senescence process, candidate genes are key tools to enable the early detection of this process. In this sense and given the importance of some transcription factors as hub genes in senescence pathways, we present a comprehensive review on senescence-associated transcription factors, in model plant species and in agronomic relevant crops. This review will contribute to the knowledge of leaf senescence process in crops, thus providing a valuable tool to assist molecular crop breeding.
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Affiliation(s)
- Sofia Bengoa Luoni
- Consejo Nacional de Investigaciones Científicas y Técnicas, Ciudad Autónoma de Buenos Aires 1425, Argentina.
| | - Francisco H Astigueta
- Consejo Nacional de Investigaciones Científicas y Técnicas, Ciudad Autónoma de Buenos Aires 1425, Argentina.
- Escuela de Ciencia y Tecnología, Universidad Nacional de San Martín, San Martín, Buenos Aires 1650, Argentina.
| | - Salvador Nicosia
- Consejo Nacional de Investigaciones Científicas y Técnicas, Ciudad Autónoma de Buenos Aires 1425, Argentina.
- Universidad Nacional de Lujan, Cruce Rutas Nac. 5 y 7, Lujan, Buenos Aires 6700, Argentina.
| | - Sebastian Moschen
- Consejo Nacional de Investigaciones Científicas y Técnicas, Ciudad Autónoma de Buenos Aires 1425, Argentina.
- Instituto Nacional de Tecnología Agropecuaria, Estación Experimental Agropecuaria Famaillá, Tucumán 4142, Argentina.
| | - Paula Fernandez
- Consejo Nacional de Investigaciones Científicas y Técnicas, Ciudad Autónoma de Buenos Aires 1425, Argentina.
- Escuela de Ciencia y Tecnología, Universidad Nacional de San Martín, San Martín, Buenos Aires 1650, Argentina.
- Instituto de Agrobiotecnología y Biología Molecular (INTA-CONICET), Instituto de Biotecnología, Centro de Investigaciones en Ciencias Agronómicas y Veterinarias, Instituto Nacional de Tecnología Agropecuaria, Hurlingham, Buenos Aires 1686, Argentina.
| | - Ruth Heinz
- Consejo Nacional de Investigaciones Científicas y Técnicas, Ciudad Autónoma de Buenos Aires 1425, Argentina.
- Instituto de Agrobiotecnología y Biología Molecular (INTA-CONICET), Instituto de Biotecnología, Centro de Investigaciones en Ciencias Agronómicas y Veterinarias, Instituto Nacional de Tecnología Agropecuaria, Hurlingham, Buenos Aires 1686, Argentina.
- Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Autónoma de Buenos Aires 1428, Argentina.
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26
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Bandla S, Diaz S, Nasheuer HP, FitzGerald U. ATPase activity of human binding immunoglobulin protein (BiP) variants is enhanced by signal sequence and physiological concentrations of Mn 2. FEBS Open Bio 2019; 9:1355-1369. [PMID: 31033254 PMCID: PMC6668376 DOI: 10.1002/2211-5463.12645] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2019] [Revised: 04/16/2019] [Accepted: 04/26/2019] [Indexed: 11/30/2022] Open
Abstract
B‐cell immunoglobulin binding protein (BiP) is an essential endoplasmic reticulum (ER) chaperone normally found in the ER lumen. However, BiP also has other extracellular and intracellular functions. As it is unclear whether peripheral BiP has a signal and/or ER retention sequence, here we produced and biochemically characterised four variants of BiP. The variants differed depending on the presence or the absence of signal and ER retention peptides. Proteins were purified using nickel affinity chromatography, and variant size and quality were confirmed using SDS/PAGE gels. The thermal denaturing temperature of these proteins was found to be 46–47 °C. In addition, we characterised nucleotide binding properties in the absence and the presence of divalent cations. Interestingly, in the absence of cations, ADP has a higher binding affinity to BiP than ATP. The presence of divalent cations results in a decrease of the Kd values of both ADP and ATP, indicating higher affinities of both nucleotides for BiP. ATPase assays were carried out to study the enzyme activity of these variants and to characterise the kinetic parameters of BiP variants. Variants with the signal sequence had higher specific activities than those without. Both Mg2+ and Mn2+ efficiently stimulated the ATPase activity of these variants at low micromolar concentrations, whereas calcium failed to stimulate BiP ATPase. Our novel findings indicate the potential functionality of BiP variants that retain a signal sequence, and also reveal the effect of physiological concentrations of cations on the nucleotide binding properties and enzyme activities of all variants.
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Affiliation(s)
- Sravanthi Bandla
- School of Natural Sciences, National University of Ireland Galway, Galway, Ireland.,Galway Neuroscience Centre, National University of Ireland Galway, Galway, Ireland
| | - Suraya Diaz
- School of Natural Sciences, National University of Ireland Galway, Galway, Ireland.,Centre for Chromosome Biology, National University of Ireland Galway, Galway, Ireland
| | - Heinz Peter Nasheuer
- School of Natural Sciences, National University of Ireland Galway, Galway, Ireland.,Centre for Chromosome Biology, National University of Ireland Galway, Galway, Ireland
| | - Una FitzGerald
- School of Natural Sciences, National University of Ireland Galway, Galway, Ireland.,Galway Neuroscience Centre, National University of Ireland Galway, Galway, Ireland
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27
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Zhang R, Chen H, Duan M, Zhu F, Wen J, Dong J, Wang T. Medicago falcata MfSTMIR, an E3 ligase of endoplasmic reticulum-associated degradation, is involved in salt stress response. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2019; 98:680-696. [PMID: 30712282 PMCID: PMC6849540 DOI: 10.1111/tpj.14265] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2019] [Revised: 01/22/2019] [Accepted: 01/23/2019] [Indexed: 05/28/2023]
Abstract
Recent studies on E3 of endoplasmic reticulum (ER)-associated degradation (ERAD) in plants have revealed homologs in yeast and animals. However, it remains unknown whether the plant ERAD system contains a plant-specific E3 ligase. Here, we report that MfSTMIR, which encodes an ER-membrane-localized RING E3 ligase that is highly conserved in leguminous plants, plays essential roles in the response of ER and salt stress in Medicago. MfSTMIR expression was induced by salt and tunicamycin (Tm). mtstmir loss-of-function mutants displayed impaired induction of the ER stress-responsive genes BiP1/2 and BiP3 under Tm treatment and sensitivity to salt stress. MfSTMIR promoted the degradation of a known ERAD substrate, CPY*. MfSTMIR interacted with the ERAD-associated ubiquitin-conjugating enzyme MtUBC32 and Sec61-translocon subunit MtSec61γ. MfSTMIR did not affect MtSec61γ protein stability. Our results suggest that the plant-specific E3 ligase MfSTMIR participates in the ERAD pathway by interacting with MtUBC32 and MtSec61γ to relieve ER stress during salt stress.
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Affiliation(s)
- Rongxue Zhang
- State Key Laboratory of AgrobiotechnologyCollege of Biological SciencesChina Agricultural UniversityBeijing100193China
- Crop Research Institute of Tianjin Academy of Agricultural SciencesTianjin300384China
| | - Hong Chen
- State Key Laboratory of AgrobiotechnologyCollege of Biological SciencesChina Agricultural UniversityBeijing100193China
| | - Mei Duan
- State Key Laboratory of AgrobiotechnologyCollege of Biological SciencesChina Agricultural UniversityBeijing100193China
| | - Fugui Zhu
- State Key Laboratory of AgrobiotechnologyCollege of Biological SciencesChina Agricultural UniversityBeijing100193China
| | - Jiangqi Wen
- Plant Biology DivisionSamuel Roberts Noble Research InstituteArdmoreOklahoma73401USA
| | - Jiangli Dong
- State Key Laboratory of AgrobiotechnologyCollege of Biological SciencesChina Agricultural UniversityBeijing100193China
| | - Tao Wang
- State Key Laboratory of AgrobiotechnologyCollege of Biological SciencesChina Agricultural UniversityBeijing100193China
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Staszek P, Krasuska U, Otulak-Kozieł K, Fettke J, Gniazdowska A. Canavanine-Induced Decrease in Nitric Oxide Synthesis Alters Activity of Antioxidant System but Does Not Impact S-Nitrosoglutathione Catabolism in Tomato Roots. FRONTIERS IN PLANT SCIENCE 2019; 10:1077. [PMID: 31616445 PMCID: PMC6763595 DOI: 10.3389/fpls.2019.01077] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/02/2019] [Accepted: 08/07/2019] [Indexed: 05/09/2023]
Abstract
Canavanine (CAN) is a nonproteinogenic amino acid synthesized in legumes. In mammalians, as arginine analogue, it is an inhibitor of nitric oxide synthase (NOS) activity. The aim of this study was to investigate the impact of CAN-induced nitric oxide level limitation on the antioxidant system and S-nitrosoglutathione (GSNO) metabolism in roots of tomato seedlings. Treatment with CAN (10 or 50 µM) for 24-72 h led to restriction in root growth. Arginine-dependent NOS-like activity was almost completely inhibited, demonstrating direct effect of CAN action. CAN increased total antioxidant capacity and the level of sulphydryl groups. Catalase (CAT) and superoxide dismutase (SOD) activity decreased in CAN exposed roots. CAN supplementation resulted in the decrease of transcript levels of genes coding CAT (with the exception of CAT1). Genes coding SOD (except MnSOD and CuSOD) were upregulated by CAN short treatment; prolonged exposition to 50-µM CAN resulted in downregulation of FeSOD, CuSOD, and SODP-2. Activity of glutathione reductase dropped down after short-term (10-µM CAN) supplementation, while glutathione peroxidase activity was not affected. Transcript levels of glutathione reductase genes declined in response to CAN. Genes coding glutathione peroxidase were upregulated by 50-µM CAN, while 10-µM CAN downregulated GSHPx1. Inhibition of NOS-like activity by CAN resulted in lower GSNO accumulation in root tips. Activity of GSNO reductase was decreased by short-term supplementation with CAN. In contrast, GSNO reductase protein abundance was higher, while transcript levels were slightly altered in roots exposed to CAN. This is the first report on identification of differentially nitrated proteins in response to supplementation with nonproteinogenic amino acid. Among nitrated proteins differentially modified by CAN, seed storage proteins (after short-term CAN treatment) and components of the cellular redox system (after prolonged CAN supplementation) were identified. The findings demonstrate that due to inhibition of NOS-like activity, CAN leads to modification in antioxidant system. Limitation in GSNO level is due to lower nitric oxide formation, while GSNO catabolism is less affected. We demonstrated that monodehydroascorbate reductase, activity of which is inhibited in roots of CAN-treated plants, is the protein preferentially modified by tyrosine nitration.
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Affiliation(s)
- Pawel Staszek
- Department of Plant Physiology, Warsaw University of Life Sciences–SGGW, Warsaw, Poland
- *Correspondence: Pawel Staszek, ;
| | - Urszula Krasuska
- Department of Plant Physiology, Warsaw University of Life Sciences–SGGW, Warsaw, Poland
| | | | - Joerg Fettke
- Biopolymer Analytics, University of Potsdam, Potsdam-Golm, Germany
| | - Agnieszka Gniazdowska
- Department of Plant Physiology, Warsaw University of Life Sciences–SGGW, Warsaw, Poland
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29
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Ojangu EL, Ilau B, Tanner K, Talts K, Ihoma E, Dolja VV, Paves H, Truve E. Class XI Myosins Contribute to Auxin Response and Senescence-Induced Cell Death in Arabidopsis. FRONTIERS IN PLANT SCIENCE 2018; 9:1570. [PMID: 30538710 PMCID: PMC6277483 DOI: 10.3389/fpls.2018.01570] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2018] [Accepted: 10/08/2018] [Indexed: 05/24/2023]
Abstract
The integrity and dynamics of actin cytoskeleton is necessary not only for plant cell architecture but also for membrane trafficking-mediated processes such as polar auxin transport, senescence, and cell death. In Arabidopsis, the inactivation of actin-based molecular motors, class XI myosins, affects the membrane trafficking and integrity of actin cytoskeleton, and thus causes defective plant growth and morphology, altered lifespan and reduced fertility. To evaluate the potential contribution of class XI myosins to the auxin response, senescence and cell death, we followed the flower and leaf development in the triple gene knockout mutant xi1 xi2 xik (3KO) and in rescued line stably expressing myosin XI-K:YFP (3KOR). Assessing the development of primary inflorescence shoots we found that the 3KO plants produced more axillary branches. Exploiting the auxin-dependent reporters DR5::GUS and IAA2::GUS, a significant reduction in auxin responsiveness was found throughout the development of the 3KO plants. Examination of the flower development of the plants stably expressing the auxin transporter PIN1::PIN1-GFP revealed partial loss of PIN1 polarization in developing 3KO pistils. Surprisingly, the stable expression of PIN1::PIN1-GFP significantly enhanced the semi-sterile phenotype of the 3KO plants. Further we investigated the localization of myosin XI-K:YFP in the 3KOR floral organs and revealed its expression pattern in floral primordia, developing pistils, and anther filaments. Interestingly, the XI-K:YFP and PIN1::PIN1-GFP shared partially overlapping but distinct expression patterns throughout floral development. Assessing the foliar development of the 3KO plants revealed increased rosette leaf production with signs of premature yellowing. Symptoms of the premature senescence correlated with massive loss of chlorophyll, increased cell death, early plasmolysis of epidermal cells, and strong up-regulation of the stress-inducible senescence-associated gene SAG13 in 3KO plants. Simultaneously, the reduced auxin responsiveness and premature leaf senescence were accompanied by significant anthocyanin accumulation in 3KO tissues. Collectively, our results provide genetic evidences that Arabidopsis class XI myosins arrange the flower morphogenesis and leaf longevity via contributing to auxin responses, leaf senescence, and cell death.
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Affiliation(s)
- Eve-Ly Ojangu
- Department of Chemistry and Biotechnology, Tallinn University of Technology, Tallinn, Estonia
| | - Birger Ilau
- Department of Chemistry and Biotechnology, Tallinn University of Technology, Tallinn, Estonia
| | - Krista Tanner
- Department of Chemistry and Biotechnology, Tallinn University of Technology, Tallinn, Estonia
| | - Kristiina Talts
- Department of Chemistry and Biotechnology, Tallinn University of Technology, Tallinn, Estonia
| | - Eliis Ihoma
- Department of Chemistry and Biotechnology, Tallinn University of Technology, Tallinn, Estonia
| | - Valerian V. Dolja
- Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, United States
| | - Heiti Paves
- Department of Chemistry and Biotechnology, Tallinn University of Technology, Tallinn, Estonia
| | - Erkki Truve
- Department of Chemistry and Biotechnology, Tallinn University of Technology, Tallinn, Estonia
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30
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Wang J, Zeng X, Tian D, Yang X, Wang L, Yin Z. The pepper Bs4C proteins are localized to the endoplasmic reticulum (ER) membrane and confer disease resistance to bacterial blight in transgenic rice. MOLECULAR PLANT PATHOLOGY 2018; 19:2025-2035. [PMID: 29603592 PMCID: PMC6638055 DOI: 10.1111/mpp.12684] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2018] [Revised: 02/21/2018] [Accepted: 03/25/2018] [Indexed: 05/07/2023]
Abstract
Transcription activator-like effector (TALE)-dependent dominant disease resistance (R) genes in plants, also referred to as executor R genes, are induced on infection by phytopathogenic bacteria of the genus Xanthomonas harbouring the corresponding TALE genes. Unlike the traditional R proteins, the executor R proteins do not determine the resistance specificity and may function broadly in different plant species. The executor R gene Bs4C-R in the resistant genotype PI 235047 of the pepper species Capsicum pubescens (CpBs4C-R) confers disease resistance to Xanthomonas campestris pv. vesicatoria (Xcv) harbouring the TALE genes avrBsP/avrBs4. In this study, the synthetic genes of CpBs4C-R and two other Bs4C-like genes, the susceptible allele in the genotype PI585270 of C. pubescens (CpBs4C-S) and the CaBs4C-R homologue gene in the cultivar 'CM334' of Capsicum annum (CaBs4C), were characterized in tobacco (Nicotiana benthamiana) and rice (Oryza sativa). The Bs4C genes induced cell death in N. benthamiana. The functional Bs4C-eCFP fusion proteins were localized to the endoplasmic reticulum (ER) membrane in the leaf epidermal cells of N. benthamiana. The Xa10 promoter-Bs4C fusion genes in transgenic rice conferred strain-specific disease resistance to Xanthomonas oryzae pv. oryzae (Xoo), the causal agent of bacterial blight in rice, and were specifically induced by the Xa10-incompatible Xoo strain PXO99A (pHM1avrXa10). The results indicate that the Bs4C proteins from pepper species function broadly in rice and the Bs4C protein-mediated cell death from the ER is conserved between dicotyledonous and monocotyledonous plants, which can be utilized to engineer novel and enhanced disease resistance in heterologous plants.
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Affiliation(s)
- Jun Wang
- Temasek Life Sciences LaboratoryNational University of SingaporeSingapore 117604Singapore
| | - Xuan Zeng
- Temasek Life Sciences LaboratoryNational University of SingaporeSingapore 117604Singapore
| | - Dongsheng Tian
- Temasek Life Sciences LaboratoryNational University of SingaporeSingapore 117604Singapore
| | - Xiaobei Yang
- Temasek Life Sciences LaboratoryNational University of SingaporeSingapore 117604Singapore
| | - Lanlan Wang
- Temasek Life Sciences LaboratoryNational University of SingaporeSingapore 117604Singapore
| | - Zhongchao Yin
- Temasek Life Sciences LaboratoryNational University of SingaporeSingapore 117604Singapore
- Department of Biological SciencesNational University of SingaporeSingapore 117543Singapore
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Xiao G, Zhou J, Lu X, Huang R, Zhang H. Excessive UDPG resulting from the mutation of UAP1 causes programmed cell death by triggering reactive oxygen species accumulation and caspase-like activity in rice. THE NEW PHYTOLOGIST 2018; 217:332-343. [PMID: 28967675 DOI: 10.1111/nph.14818] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/05/2017] [Accepted: 08/25/2017] [Indexed: 05/08/2023]
Abstract
Lesion mimic mutants are valuable to unravel the mechanisms governing the programmed cell death (PCD) process. Uridine 5'-diphosphoglucose-glucose (UDPG) functions as a signaling molecule activating multiple pathways in animals, but little is known about its function in plants. Two novel allelic mutants of spl29 with typical PCD characters and reduced pollen viability were obtained by ethane methyl sulfonate mutagenesis in rice cv Kitaake. The enzymatic analyses showed that UDP-N-acetylglucosamine pyrophosphorylase 1 (UAP1) irreversibly catalyzed the decomposition of UDPG. Its activity was severely destroyed and caused excessive UDPG accumulation, with the lesion occurrence associated with the enhanced caspase-like activities in spl29-2. At the transcriptional level, several key genes involved in endoplasmic reticulum stress and the unfolded protein response were abnormally expressed. Moreover, exogenous UDPG could aggravate lesion initiation and development in spl29-2. Importantly, exogenous UDPG and its derivative UDP-N-acetylglucosamine could induce reactive oxygen species (ROS) accumulation and lesion mimics in Kitaake seedlings. These results suggest that the excessive accumulation of UDPG, caused by the mutation of UAP1, was a key biochemical event resulting in the lesion mimics in spl29-2. Thus, our findings revealed that UDPG might be an important component involved in ROS accumulation, PCD execution and lesion mimicking in rice, which also provided new clues for investigating the connection between sugar metabolism and PCD process.
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Affiliation(s)
- Guiqing Xiao
- College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha, 410128, China
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Jiahao Zhou
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Xiangyang Lu
- College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha, 410128, China
| | - Rongfeng Huang
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Haiwen Zhang
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
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Melo BP, Fraga OT, Silva JCF, Ferreira DO, Brustolini OJB, Carpinetti PA, Machado JPB, Reis PAB, Fontes EPB. Revisiting the Soybean GmNAC Superfamily. FRONTIERS IN PLANT SCIENCE 2018; 9:1864. [PMID: 30619426 PMCID: PMC6305603 DOI: 10.3389/fpls.2018.01864] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2018] [Accepted: 12/04/2018] [Indexed: 05/07/2023]
Abstract
The NAC (NAM, ATAF, and CUC) genes encode transcription factors involved with the control of plant morph-physiology and stress responses. The release of the last soybean (Glycine max) genome assembly (Wm82.a2.v1) raised the possibility that new NAC genes would be present in the soybean genome. Here, we interrogated the last version of the soybean genome against a conserved NAC domain structure. Our analysis identified 32 putative novel NAC genes, updating the superfamily to 180 gene members. We also organized the genes in 15 phylogenetic subfamilies, which showed a perfect correlation among sequence conservation, expression profile, and function of orthologous Arabidopsis thaliana genes and NAC soybean genes. To validate our in silico analyses, we monitored the stress-mediated gene expression profiles of eight new NAC-genes by qRT-PCR and monitored the GmNAC senescence-associated genes by RNA-seq. Among ER stress, osmotic stress and salicylic acid treatment, all the novel tested GmNAC genes responded to at least one type of stress, displaying a complex expression profile under different kinetics and extension of the response. Furthermore, we showed that 40% of the GmNACs were differentially regulated by natural leaf senescence, including eight (8) newly identified GmNACs. The developmental and stress-responsive expression profiles of the novel NAC genes fitted perfectly with their phylogenetic subfamily. Finally, we examined two uncharacterized senescence-associated proteins, GmNAC065 and GmNAC085, and a novel, previously unidentified, NAC protein, GmNAC177, and showed that they are nuclear localized, and except for GmNAC065, they display transactivation activity in yeast. Consistent with a role in leaf senescence, transient expression of GmNAC065 and GmNAC085 induces the appearance of hallmarks of leaf senescence, including chlorophyll loss, leaf yellowing, lipid peroxidation and accumulation of H2O2. GmNAC177 was clustered to an uncharacterized subfamily but in close proximity to the TIP subfamily. Accordingly, it was rapidly induced by ER stress and by salicylic acid under late kinetic response and promoted cell death in planta. Collectively, our data further substantiated the notion that the GmNAC genes display functional and expression profiles consistent with their phylogenetic relatedness and established a complete framework of the soybean NAC superfamily as a foundation for future analyses.
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Affiliation(s)
- Bruno P. Melo
- National Institute of Science and Technology in Plant-Pest Interactions, Bioagro, Universidade Federal de Viçosa, Viçosa, Brazil
- Departamento de Bioquímica e Biologia Molecular/BIOAGRO, Universidade Federal de Viçosa, Viçosa, Brazil
| | - Otto T. Fraga
- National Institute of Science and Technology in Plant-Pest Interactions, Bioagro, Universidade Federal de Viçosa, Viçosa, Brazil
- Departamento de Bioquímica e Biologia Molecular/BIOAGRO, Universidade Federal de Viçosa, Viçosa, Brazil
| | - José Cleydson F. Silva
- National Institute of Science and Technology in Plant-Pest Interactions, Bioagro, Universidade Federal de Viçosa, Viçosa, Brazil
| | - Dalton O. Ferreira
- National Institute of Science and Technology in Plant-Pest Interactions, Bioagro, Universidade Federal de Viçosa, Viçosa, Brazil
| | - Otávio J. B. Brustolini
- National Institute of Science and Technology in Plant-Pest Interactions, Bioagro, Universidade Federal de Viçosa, Viçosa, Brazil
| | - Paola A. Carpinetti
- Departamento de Bioquímica e Biologia Molecular/BIOAGRO, Universidade Federal de Viçosa, Viçosa, Brazil
| | | | - Pedro A. B. Reis
- National Institute of Science and Technology in Plant-Pest Interactions, Bioagro, Universidade Federal de Viçosa, Viçosa, Brazil
- Departamento de Bioquímica e Biologia Molecular/BIOAGRO, Universidade Federal de Viçosa, Viçosa, Brazil
| | - Elizabeth P. B. Fontes
- National Institute of Science and Technology in Plant-Pest Interactions, Bioagro, Universidade Federal de Viçosa, Viçosa, Brazil
- Departamento de Bioquímica e Biologia Molecular/BIOAGRO, Universidade Federal de Viçosa, Viçosa, Brazil
- *Correspondence: Elizabeth P. B. Fontes
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Zhu Y, Yu Y, Cheng K, Ouyang Y, Wang J, Gong L, Zhang Q, Li X, Xiao J, Zhang Q. Processes Underlying a Reproductive Barrier in indica- japonica Rice Hybrids Revealed by Transcriptome Analysis. PLANT PHYSIOLOGY 2017; 174:1683-1696. [PMID: 28483876 PMCID: PMC5490891 DOI: 10.1104/pp.17.00093] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/25/2017] [Accepted: 05/04/2017] [Indexed: 05/13/2023]
Abstract
In rice (Oryza sativa), hybrids between indica and japonica subspecies are usually highly sterile, which provides a model system for studying postzygotic reproductive isolation. A killer-protector system, S5, composed of three adjacent genes (ORF3, ORF4, and ORF5), regulates female gamete fertility of indica-japonica hybrids. To characterize the processes underlying this system, we performed transcriptomic analyses of pistils from rice variety Balilla (BL), Balilla with transformed ORF5+ (BL5+) producing sterile female gametes, and Balilla with transformed ORF3+ and ORF5+ (BL3+5+) producing fertile gametes. RNA sequencing of tissues collected before (MMC), during (MEI), and after (AME) meiosis of the megaspore mother cell detected 19,269 to 20,928 genes as expressed. Comparison between BL5+ and BL showed that ORF5+ induced differential expression of 8,339, 6,278, and 530 genes at MMC, MEI, and AME, respectively. At MMC, large-scale differential expression of cell wall-modifying genes and biotic and abiotic response genes indicated that cell wall integrity damage induced severe biotic and abiotic stresses. The processes continued to MEI and induced endoplasmic reticulum (ER) stress as indicated by differential expression of ER stress-responsive genes, leading to programmed cell death at MEI and AME, resulting in abortive female gametes. In the BL3+5+/BL comparison, 3,986, 749, and 370 genes were differentially expressed at MMC, MEI, and AME, respectively. Large numbers of cell wall modification and biotic and abiotic response genes were also induced at MMC but largely suppressed at MEI without inducing ER stress and programed cell death , producing fertile gametes. These results have general implications for the understanding of biological processes underlying reproductive barriers.
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Affiliation(s)
- Yanfen Zhu
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan 430070, China
| | - Yiming Yu
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan 430070, China
| | - Ke Cheng
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan 430070, China
| | - Yidan Ouyang
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan 430070, China
| | - Jia Wang
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan 430070, China
| | - Liang Gong
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan 430070, China
| | - Qinghua Zhang
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan 430070, China
| | - Xianghua Li
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan 430070, China
| | - Jinghua Xiao
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan 430070, China
| | - Qifa Zhang
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan 430070, China
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Zhang L, Xin Z, Yu X, Ma C, Liang W, Zhu M, Cheng Q, Li Z, Niu Y, Ren Y, Wang Z, Lin T. Osmotic Stress Induced Cell Death in Wheat Is Alleviated by Tauroursodeoxycholic Acid and Involves Endoplasmic Reticulum Stress-Related Gene Expression. FRONTIERS IN PLANT SCIENCE 2017; 8:667. [PMID: 28515732 PMCID: PMC5413500 DOI: 10.3389/fpls.2017.00667] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2016] [Accepted: 04/11/2017] [Indexed: 05/23/2023]
Abstract
Although, tauroursodeoxycholic acid (TUDCA) has been widely studied in mammalian cells because of its role in inhibiting apoptosis, its effects on plants remain almost unknown, especially in the case of crops such as wheat. In this study, we conducted a series of experiments to explore the effects and mechanisms of action of TUDCA on wheat growth and cell death induced by osmotic stress. Our results show that TUDCA: (1) ameliorates the impact of osmotic stress on wheat height, fresh weight, and water content; (2) alleviates the decrease in chlorophyll content as well as membrane damage caused by osmotic stress; (3) decreases the accumulation of reactive oxygen species (ROS) by increasing the activity of antioxidant enzymes under osmotic stress; and (4) to some extent alleviates osmotic stress-induced cell death probably by regulating endoplasmic reticulum (ER) stress-related gene expression, for example expression of the basic leucine zipper genes bZIP60B and bZIP60D, the binding proteins BiP1 and BiP2, the protein disulfide isomerase PDIL8-1, and the glucose-regulated protein GRP94. We also propose a model that illustrates how TUDCA alleviates osmotic stress-related wheat cell death, which provides an important theoretical basis for improving plant stress adaptation and elucidates the mechanisms of ER stress-related plant osmotic stress resistance.
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Affiliation(s)
- Liting Zhang
- College of Agronomy, Henan Agricultural UniversityZhengzhou, China
- Collaborative Innovation Center of Henan Grain CropsZhengzhou, China
- National Key Laboratory of Wheat and Maize Crop ScienceZhengzhou, China
| | - Zeyu Xin
- College of Agronomy, Henan Agricultural UniversityZhengzhou, China
- Collaborative Innovation Center of Henan Grain CropsZhengzhou, China
- National Key Laboratory of Wheat and Maize Crop ScienceZhengzhou, China
| | - Xing Yu
- College of Agronomy, Henan Agricultural UniversityZhengzhou, China
- Collaborative Innovation Center of Henan Grain CropsZhengzhou, China
- National Key Laboratory of Wheat and Maize Crop ScienceZhengzhou, China
| | - Chao Ma
- College of Agronomy, Henan University of Science and TechnologyLuoyang, China
| | - Weiwei Liang
- College of Agronomy, Henan Agricultural UniversityZhengzhou, China
- Collaborative Innovation Center of Henan Grain CropsZhengzhou, China
- National Key Laboratory of Wheat and Maize Crop ScienceZhengzhou, China
| | - Meichen Zhu
- College of Agronomy, Henan Agricultural UniversityZhengzhou, China
- Collaborative Innovation Center of Henan Grain CropsZhengzhou, China
- National Key Laboratory of Wheat and Maize Crop ScienceZhengzhou, China
| | - Qiwei Cheng
- College of Agronomy, Henan Agricultural UniversityZhengzhou, China
- Collaborative Innovation Center of Henan Grain CropsZhengzhou, China
- National Key Laboratory of Wheat and Maize Crop ScienceZhengzhou, China
| | - Zongzhen Li
- College of Agronomy, Henan Agricultural UniversityZhengzhou, China
- Collaborative Innovation Center of Henan Grain CropsZhengzhou, China
- National Key Laboratory of Wheat and Maize Crop ScienceZhengzhou, China
| | - Yanan Niu
- College of Agronomy, Henan Agricultural UniversityZhengzhou, China
| | - Yongzhe Ren
- College of Agronomy, Henan Agricultural UniversityZhengzhou, China
- Collaborative Innovation Center of Henan Grain CropsZhengzhou, China
- National Key Laboratory of Wheat and Maize Crop ScienceZhengzhou, China
| | - Zhiqiang Wang
- College of Agronomy, Henan Agricultural UniversityZhengzhou, China
- Collaborative Innovation Center of Henan Grain CropsZhengzhou, China
- National Key Laboratory of Wheat and Maize Crop ScienceZhengzhou, China
| | - Tongbao Lin
- College of Agronomy, Henan Agricultural UniversityZhengzhou, China
- Collaborative Innovation Center of Henan Grain CropsZhengzhou, China
- National Key Laboratory of Wheat and Maize Crop ScienceZhengzhou, China
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Angelos E, Ruberti C, Kim SJ, Brandizzi F. Maintaining the factory: the roles of the unfolded protein response in cellular homeostasis in plants. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2017; 90:671-682. [PMID: 27943485 PMCID: PMC5415411 DOI: 10.1111/tpj.13449] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/05/2016] [Revised: 11/23/2016] [Accepted: 12/02/2016] [Indexed: 05/07/2023]
Abstract
Much like a factory, the endoplasmic reticulum (ER) assembles simple cellular building blocks into complex molecular machines known as proteins. In order to protect the delicate protein folding process and ensure the proper cellular delivery of protein products under environmental stresses, eukaryotes have evolved a set of signaling mechanisms known as the unfolded protein response (UPR) to increase the folding capacity of the ER. This process is particularly important in plants, because their sessile nature commands adaptation for survival rather than escape from stress. As such, plants make special use of the UPR, and evidence indicates that the master regulators and downstream effectors of the UPR have distinct roles in mediating cellular processes that affect organism growth and development as well as stress responses. In this review we outline recent developments in this field that support a strong relevance of the UPR to many areas of plant life.
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Affiliation(s)
- Evan Angelos
- MSU-DOE Plant Research Lab and Plant Biology Department, Michigan State University, East Lansing, MI 48824, USA
| | - Cristina Ruberti
- MSU-DOE Plant Research Lab and Plant Biology Department, Michigan State University, East Lansing, MI 48824, USA
| | - Sang-Jin Kim
- MSU-DOE Plant Research Lab and Plant Biology Department, Michigan State University, East Lansing, MI 48824, USA
- Great Lakes Bioenergy Research Center, Michigan State University, East Lansing, MI 48824, USA
| | - Federica Brandizzi
- MSU-DOE Plant Research Lab and Plant Biology Department, Michigan State University, East Lansing, MI 48824, USA
- Department of Plant Biology, Michigan State University, East Lansing, MI 48824, USA
- Great Lakes Bioenergy Research Center, Michigan State University, East Lansing, MI 48824, USA
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Wang H, Niu H, Zhai Y, Lu M. Characterization of BiP Genes from Pepper ( Capsicum annuum L.) and the Role of CaBiP1 in Response to Endoplasmic Reticulum and Multiple Abiotic Stresses. FRONTIERS IN PLANT SCIENCE 2017; 8:1122. [PMID: 28702041 PMCID: PMC5487487 DOI: 10.3389/fpls.2017.01122] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/17/2017] [Accepted: 06/12/2017] [Indexed: 05/18/2023]
Abstract
Adverse environmental conditions have a detrimental impact on crop growth and development, and cause protein denaturation or misfolding. The binding protein (BiP) plays an important protective role by alleviating endoplasmic reticulum (ER) stress induced by misfolded proteins. In this study, we characterized three BiP genes (CaBiP1, CaBiP2, and CaBiP3) in pepper, an economically important vegetable and spice species. The role of CaBiP1 in plant tolerance to ER stress and adverse environmental conditions (including heat, salinity, osmotic and drought stress) were investigated. All the expected functional and signaling domains were detected in three BiP proteins, but the motifs and exon-intron distribution differed slightly in CaBiP3. CaBiP1 and CaBiP2 were constitutively expressed in all the tested tissues under both normal and stressed conditions, whereas CaBiP3 was mainly expressed following stress. Silencing of CaBiP1 reduced pepper tolerance to ER stress and various environment stresses, and was accompanied by increased H2O2 accumulation, MDA content, relative electric leakage (REL), water loss rate, and a reduction in soluble protein content and relative water content (RWC) in the leaves. Conversely, overexpression of CaBiP1 in Arabidopsis enhanced tolerance to ER stress and multiple environment stresses, as demonstrated by an increase in germination rate, root length, survival rate, RWC, the unfolded protein response (UPR) pathway, and a decrease in water loss rate. Our results suggest that CaBiP1 may contribute to plant tolerance to abiotic stresses by reducing ROS accumulation, increasing the water-retention ability, and stimulating UPR pathways and expression of stress-related genes.
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Moon JY, Lee JH, Oh C, Kang H, Park JM. Endoplasmic reticulum stress responses function in the HRT-mediated hypersensitive response in Nicotiana benthamiana. MOLECULAR PLANT PATHOLOGY 2016; 17:1382-1397. [PMID: 26780303 PMCID: PMC6638521 DOI: 10.1111/mpp.12369] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2015] [Revised: 01/10/2016] [Accepted: 01/11/2016] [Indexed: 05/08/2023]
Abstract
HRT is a plant coiled-coil, nucleotide-binding and leucine-rich repeat (CC-NB-LRR) disease resistance protein that triggers the hypersensitive response (HR) on recognition of Turnip crinkle virus (TCV) coat protein (CP). The molecular mechanism and significance of HR-mediated cell death for TCV resistance have not been fully elucidated. To identify the genes involved in HRT/TCV CP-mediated HR in Nicotiana benthamiana, we performed virus-induced gene silencing (VIGS) of 459 expressed sequence tags (ESTs) of pathogen-responsive Capsicum annuum genes. VIGS of CaBLP5, which encodes an endoplasmic reticulum (ER)-associated immunoglobulin-binding protein (BiP), silenced NbBiP4 and NbBiP5 and significantly reduced HRT-mediated HR. The induction of ER stress-responsive genes and the accumulation of ER-targeted BiPs in response to HRT-mediated HR suggest that ER is involved in HR in N. benthamiana. BiP4/5 silencing significantly down-regulated HRT at the mRNA and protein levels, and affected SGT1 and HSP90 expression. Co-expression of TCV CP in BiP4/5-silenced plants completely abolished HRT induction. Transient expression of TCV CP alone induced selected ER stress-responsive gene transcripts only in Tobacco rattle virus (TRV)-infected plants, and most of these genes were induced by HRT/TCV CP, except for bZIP60, which was induced specifically in response to HRT/TCV CP. TCV CP-mediated induction of ER stress-responsive genes still occurred in BiP4/5-silenced plants, but HRT/TCV CP-mediated induction of these genes was defective. Tunicamycin, a chemical that inhibits protein N-glycosylation, inhibited HRT-mediated HR, suggesting that ER has a role in HR regulation. These results indicate that BiP and ER, which modulate pattern recognition receptors in innate immunity, also regulate R protein-mediated resistance.
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Affiliation(s)
- Ju Yeon Moon
- Molecular Biofarming Research CenterKRIBBDaejeon305‐600South Korea
- Department of Biosystems and BioengineeringUSTDaejeon305‐350South Korea
| | - Jeong Hee Lee
- Molecular Biofarming Research CenterKRIBBDaejeon305‐600South Korea
| | - Chang‐Sik Oh
- Department of HorticultureKyung Hee UniversityYongin446‐701South Korea
| | - Hong‐Gu Kang
- Department of BiologyTexas State UniversitySan MarcosTX78666USA
| | - Jeong Mee Park
- Molecular Biofarming Research CenterKRIBBDaejeon305‐600South Korea
- Department of Biosystems and BioengineeringUSTDaejeon305‐350South Korea
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Luan H, Shine MB, Cui X, Chen X, Ma N, Kachroo P, Zhi H, Kachroo A. The Potyviral P3 Protein Targets Eukaryotic Elongation Factor 1A to Promote the Unfolded Protein Response and Viral Pathogenesis. PLANT PHYSIOLOGY 2016; 172:221-34. [PMID: 27356973 PMCID: PMC5074642 DOI: 10.1104/pp.16.00505] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2016] [Accepted: 06/14/2016] [Indexed: 05/21/2023]
Abstract
The biochemical function of the potyviral P3 protein is not known, although it is known to regulate virus replication, movement, and pathogenesis. We show that P3, the putative virulence determinant of soybean mosaic virus (SMV), targets a component of the translation elongation complex in soybean. Eukaryotic elongation factor 1A (eEF1A), a well-known host factor in viral pathogenesis, is essential for SMV virulence and the associated unfolded protein response (UPR). Silencing GmEF1A inhibits accumulation of SMV and another ER-associated virus in soybean. Conversely, endoplasmic reticulum (ER) stress-inducing chemicals promote SMV accumulation in wild-type, but not GmEF1A-knockdown, plants. Knockdown of genes encoding the eEF1B isoform, which is important for eEF1A function in translation elongation, has similar effects on UPR and SMV resistance, suggesting a link to translation elongation. P3 and GmEF1A promote each other's nuclear localization, similar to the nuclear-cytoplasmic transport of eEF1A by the Human immunodeficiency virus 1 Nef protein. Our results suggest that P3 targets host elongation factors resulting in UPR, which in turn facilitates SMV replication and place eEF1A upstream of BiP in the ER stress response during pathogen infection.
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Affiliation(s)
- Hexiang Luan
- National Center for Soybean Improvement, National Key Laboratory for Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China (H.L., N.M., H.Z.);Department of Plant Pathology, University of Kentucky, Lexington, Kentucky 40546 (H.L., M.B.S., P.K., A.K.); andJiangsu Academy of Agricultural Sciences, Nanjing 210014, China (X.Cu., X.Ch.)
| | - M B Shine
- National Center for Soybean Improvement, National Key Laboratory for Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China (H.L., N.M., H.Z.);Department of Plant Pathology, University of Kentucky, Lexington, Kentucky 40546 (H.L., M.B.S., P.K., A.K.); andJiangsu Academy of Agricultural Sciences, Nanjing 210014, China (X.Cu., X.Ch.)
| | - Xiaoyan Cui
- National Center for Soybean Improvement, National Key Laboratory for Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China (H.L., N.M., H.Z.);Department of Plant Pathology, University of Kentucky, Lexington, Kentucky 40546 (H.L., M.B.S., P.K., A.K.); andJiangsu Academy of Agricultural Sciences, Nanjing 210014, China (X.Cu., X.Ch.)
| | - Xin Chen
- National Center for Soybean Improvement, National Key Laboratory for Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China (H.L., N.M., H.Z.);Department of Plant Pathology, University of Kentucky, Lexington, Kentucky 40546 (H.L., M.B.S., P.K., A.K.); andJiangsu Academy of Agricultural Sciences, Nanjing 210014, China (X.Cu., X.Ch.)
| | - Na Ma
- National Center for Soybean Improvement, National Key Laboratory for Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China (H.L., N.M., H.Z.);Department of Plant Pathology, University of Kentucky, Lexington, Kentucky 40546 (H.L., M.B.S., P.K., A.K.); andJiangsu Academy of Agricultural Sciences, Nanjing 210014, China (X.Cu., X.Ch.)
| | - Pradeep Kachroo
- National Center for Soybean Improvement, National Key Laboratory for Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China (H.L., N.M., H.Z.);Department of Plant Pathology, University of Kentucky, Lexington, Kentucky 40546 (H.L., M.B.S., P.K., A.K.); andJiangsu Academy of Agricultural Sciences, Nanjing 210014, China (X.Cu., X.Ch.)
| | - Haijan Zhi
- National Center for Soybean Improvement, National Key Laboratory for Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China (H.L., N.M., H.Z.);Department of Plant Pathology, University of Kentucky, Lexington, Kentucky 40546 (H.L., M.B.S., P.K., A.K.); andJiangsu Academy of Agricultural Sciences, Nanjing 210014, China (X.Cu., X.Ch.)
| | - Aardra Kachroo
- National Center for Soybean Improvement, National Key Laboratory for Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China (H.L., N.M., H.Z.);Department of Plant Pathology, University of Kentucky, Lexington, Kentucky 40546 (H.L., M.B.S., P.K., A.K.); andJiangsu Academy of Agricultural Sciences, Nanjing 210014, China (X.Cu., X.Ch.)
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Reis PAB, Carpinetti PA, Freitas PP, Santos EG, Camargos LF, Oliveira IH, Silva JCF, Carvalho HH, Dal-Bianco M, Soares-Ramos JR, Fontes EPB. Functional and regulatory conservation of the soybean ER stress-induced DCD/NRP-mediated cell death signaling in plants. BMC PLANT BIOLOGY 2016; 16:156. [PMID: 27405371 PMCID: PMC4943007 DOI: 10.1186/s12870-016-0843-z] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2016] [Accepted: 07/01/2016] [Indexed: 05/20/2023]
Abstract
BACKGROUND The developmental and cell death domain (DCD)-containing asparagine-rich proteins (NRPs) were first identified in soybean (Glycine max) as transducers of a cell death signal derived from prolonged endoplasmic reticulum (ER) stress, osmotic stress, drought or developmentally-programmed leaf senescence via the GmNAC81/GmNAC30/GmVPE signaling module. In spite of the relevance of the DCD/NRP-mediated signaling as a versatile adaptive response to multiple stresses, mechanistic knowledge of the pathway is lacking and the extent to which this pathway may operate in the plant kingdom has not been investigated. RESULTS Here, we demonstrated that the DCD/NRP-mediated signaling also propagates a stress-induced cell death signal in other plant species with features of a programmed cell death (PCD) response. In silico analysis revealed that several plant genomes harbor conserved sequences of the pathway components, which share functional analogy with their soybean counterparts. We showed that GmNRPs, GmNAC81and VPE orthologs from Arabidopsis, designated as AtNRP-1, AtNRP-2, ANAC036 and gVPE, respectively, induced cell death when transiently expressed in N. benthamiana leaves. In addition, loss of AtNRP1 and AtNRP2 function attenuated ER stress-induced cell death in Arabidopsis, which was in marked contrast with the enhanced cell death phenotype displayed by overexpressing lines as compared to Col-0. Furthermore, atnrp-1 knockout mutants displayed enhanced sensitivity to PEG-induced osmotic stress, a phenotype that could be complemented with ectopic expression of either GmNRP-A or GmNRP-B. In addition, AtNRPs, ANAC036 and gVPE were induced by osmotic and ER stress to an extent that was modulated by the ER-resident molecular chaperone binding protein (BiP) similarly as in soybean. Finally, as putative downstream components of the NRP-mediated cell death signaling, the stress induction of AtNRP2, ANAC036 and gVPE was dependent on the AtNRP1 function. BiP overexpression also conferred tolerance to water stress in Arabidopsis, most likely due to modulation of the drought-induced NRP-mediated cell death response. CONCLUSION Our results indicated that the NRP-mediated cell death signaling operates in the plant kingdom with conserved regulatory mechanisms and hence may be target for engineering stress tolerance and adaptation in crops.
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Affiliation(s)
- Pedro A. B. Reis
- />Departamento de Bioquímica e Biologia Molecular, Universidade Federal de Viçosa, Viçosa, MG Brazil
- />National Institute of Science and Technology in Plant-Pest Interactions, Bioagro, Universidade Federal de Viçosa, Viçosa, MG Brazil
| | - Paola A. Carpinetti
- />Departamento de Bioquímica e Biologia Molecular, Universidade Federal de Viçosa, Viçosa, MG Brazil
- />National Institute of Science and Technology in Plant-Pest Interactions, Bioagro, Universidade Federal de Viçosa, Viçosa, MG Brazil
| | - Paula P.J. Freitas
- />National Institute of Science and Technology in Plant-Pest Interactions, Bioagro, Universidade Federal de Viçosa, Viçosa, MG Brazil
| | - Eulálio G.D. Santos
- />Departamento de Bioquímica e Biologia Molecular, Universidade Federal de Viçosa, Viçosa, MG Brazil
| | - Luiz F. Camargos
- />Departamento de Bioquímica e Biologia Molecular, Universidade Federal de Viçosa, Viçosa, MG Brazil
- />National Institute of Science and Technology in Plant-Pest Interactions, Bioagro, Universidade Federal de Viçosa, Viçosa, MG Brazil
| | - Igor H.T. Oliveira
- />Departamento de Bioquímica e Biologia Molecular, Universidade Federal de Viçosa, Viçosa, MG Brazil
- />National Institute of Science and Technology in Plant-Pest Interactions, Bioagro, Universidade Federal de Viçosa, Viçosa, MG Brazil
| | - José Cleydson F. Silva
- />National Institute of Science and Technology in Plant-Pest Interactions, Bioagro, Universidade Federal de Viçosa, Viçosa, MG Brazil
| | - Humberto H. Carvalho
- />National Institute of Science and Technology in Plant-Pest Interactions, Bioagro, Universidade Federal de Viçosa, Viçosa, MG Brazil
| | - Maximiller Dal-Bianco
- />Departamento de Bioquímica e Biologia Molecular, Universidade Federal de Viçosa, Viçosa, MG Brazil
- />National Institute of Science and Technology in Plant-Pest Interactions, Bioagro, Universidade Federal de Viçosa, Viçosa, MG Brazil
| | - Juliana R.L. Soares-Ramos
- />Departamento de Bioquímica e Biologia Molecular, Universidade Federal de Viçosa, Viçosa, MG Brazil
| | - Elizabeth P. B. Fontes
- />Departamento de Bioquímica e Biologia Molecular, Universidade Federal de Viçosa, Viçosa, MG Brazil
- />National Institute of Science and Technology in Plant-Pest Interactions, Bioagro, Universidade Federal de Viçosa, Viçosa, MG Brazil
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Liu JX, Howell SH. Managing the protein folding demands in the endoplasmic reticulum of plants. THE NEW PHYTOLOGIST 2016; 211:418-28. [PMID: 26990454 DOI: 10.1111/nph.13915] [Citation(s) in RCA: 128] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2015] [Accepted: 01/25/2016] [Indexed: 05/18/2023]
Abstract
Endoplasmic reticulum (ER) stress occurs in plants during certain developmental stages or under adverse environmental conditions, as a result of the accumulation of unfolded or misfolded proteins in the ER. To minimize the accumulation of misfolded proteins in the ER, a protein quality control (PQC) system monitors protein folding and eliminates misfolded proteins through either ER-associated protein degradation (ERAD) or autophagy. ER stress elicits the unfolded protein response (UPR), which enhances the operation in plant cells of the ER protein folding machinery and the PQC system. The UPR also reduces protein folding demands in the ER by degrading mRNAs encoding secretory proteins. In plants subjected to severe or chronic stress, UPR promotes programmed cell death (PCD). Progress in the field in recent years has provided insights into the regulatory networks and signaling mechanisms of the ER stress responses in plants. In addition, novel physiological functions of the ER stress responses in plants for coordinating plant growth and development with changing environment have been recently revealed.
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Affiliation(s)
- Jian-Xiang Liu
- State Key Laboratory of Genetic Engineering, Collaborative Innovation Center of Genetics and Development, Institute of Plant Biology, School of Life Sciences, Fudan University, Shanghai, 200433, China
| | - Stephen H Howell
- Department of Genetics, Development and Cell Biology, Plant Sciences Institute, Iowa State University, Ames, IA, 50011, USA
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Jing M, Guo B, Li H, Yang B, Wang H, Kong G, Zhao Y, Xu H, Wang Y, Ye W, Dong S, Qiao Y, Tyler BM, Ma W, Wang Y. A Phytophthora sojae effector suppresses endoplasmic reticulum stress-mediated immunity by stabilizing plant Binding immunoglobulin Proteins. Nat Commun 2016; 7:11685. [PMID: 27256489 PMCID: PMC4895818 DOI: 10.1038/ncomms11685] [Citation(s) in RCA: 87] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2015] [Accepted: 04/18/2016] [Indexed: 11/15/2022] Open
Abstract
Phytophthora pathogens secrete an array of specific effector proteins to manipulate host innate immunity to promote pathogen colonization. However, little is known about the host targets of effectors and the specific mechanisms by which effectors increase susceptibility. Here we report that the soybean pathogen Phytophthora sojae uses an essential effector PsAvh262 to stabilize endoplasmic reticulum (ER)-luminal binding immunoglobulin proteins (BiPs), which act as negative regulators of plant resistance to Phytophthora. By stabilizing BiPs, PsAvh262 suppresses ER stress-triggered cell death and facilitates Phytophthora infection. The direct targeting of ER stress regulators may represent a common mechanism of host manipulation by microbes.
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Affiliation(s)
- Maofeng Jing
- Department of Plant Pathology, Nanjing Agricultural University, 210095 Nanjing, China
- Key Laboratory of Integrated Management of Crop Diseases and Pests (Ministry of Education), 210095 Nanjing, China
| | - Baodian Guo
- Department of Plant Pathology, Nanjing Agricultural University, 210095 Nanjing, China
- Key Laboratory of Integrated Management of Crop Diseases and Pests (Ministry of Education), 210095 Nanjing, China
| | - Haiyang Li
- Department of Plant Pathology, Nanjing Agricultural University, 210095 Nanjing, China
- Key Laboratory of Integrated Management of Crop Diseases and Pests (Ministry of Education), 210095 Nanjing, China
| | - Bo Yang
- Department of Plant Pathology, Nanjing Agricultural University, 210095 Nanjing, China
- Key Laboratory of Integrated Management of Crop Diseases and Pests (Ministry of Education), 210095 Nanjing, China
| | - Haonan Wang
- Department of Plant Pathology, Nanjing Agricultural University, 210095 Nanjing, China
- Key Laboratory of Integrated Management of Crop Diseases and Pests (Ministry of Education), 210095 Nanjing, China
| | - Guanghui Kong
- Department of Plant Pathology, Nanjing Agricultural University, 210095 Nanjing, China
- Key Laboratory of Integrated Management of Crop Diseases and Pests (Ministry of Education), 210095 Nanjing, China
| | - Yao Zhao
- Department of Plant Pathology, Nanjing Agricultural University, 210095 Nanjing, China
- Key Laboratory of Integrated Management of Crop Diseases and Pests (Ministry of Education), 210095 Nanjing, China
| | - Huawei Xu
- Department of Plant Pathology, Nanjing Agricultural University, 210095 Nanjing, China
- Key Laboratory of Integrated Management of Crop Diseases and Pests (Ministry of Education), 210095 Nanjing, China
| | - Yan Wang
- Department of Plant Pathology, Nanjing Agricultural University, 210095 Nanjing, China
- Key Laboratory of Integrated Management of Crop Diseases and Pests (Ministry of Education), 210095 Nanjing, China
| | - Wenwu Ye
- Department of Plant Pathology, Nanjing Agricultural University, 210095 Nanjing, China
- Key Laboratory of Integrated Management of Crop Diseases and Pests (Ministry of Education), 210095 Nanjing, China
| | - Suomeng Dong
- Department of Plant Pathology, Nanjing Agricultural University, 210095 Nanjing, China
- Key Laboratory of Integrated Management of Crop Diseases and Pests (Ministry of Education), 210095 Nanjing, China
| | - Yongli Qiao
- Institute of Crop Science, Chinese Academy of Agricultural Sciences, 100081 Beijing, China
| | - Brett M. Tyler
- Center for Genome Research and Biocomputing and Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 97331, USA
| | - Wenbo Ma
- Department of Plant Pathology and Microbiology, University of California, Riverside, California 92521, USA
- Center for Plant Cell Biology, University of California, Riverside, California 92521, USA
| | - Yuanchao Wang
- Department of Plant Pathology, Nanjing Agricultural University, 210095 Nanjing, China
- Key Laboratory of Integrated Management of Crop Diseases and Pests (Ministry of Education), 210095 Nanjing, China
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Pimenta MR, Silva PA, Mendes GC, Alves JR, Caetano HDN, Machado JPB, Brustolini OJB, Carpinetti PA, Melo BP, Silva JCF, Rosado GL, Ferreira MFS, Dal-Bianco M, Picoli EADT, Aragao FJL, Ramos HJO, Fontes EPB. The Stress-Induced Soybean NAC Transcription Factor GmNAC81 Plays a Positive Role in Developmentally Programmed Leaf Senescence. PLANT & CELL PHYSIOLOGY 2016; 57:1098-114. [PMID: 27016095 DOI: 10.1093/pcp/pcw059] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/13/2015] [Accepted: 03/15/2016] [Indexed: 05/02/2023]
Abstract
The onset of leaf senescence is a highly regulated developmental change that is controlled by both genetics and the environment. Senescence is triggered by massive transcriptional reprogramming, but functional information about its underlying regulatory mechanisms is limited. In the current investigation, we performed a functional analysis of the soybean (Glycine max) osmotic stress- and endoplasmic reticulum (ER) stress-induced NAC transcription factor GmNAC81 during natural leaf senescence using overexpression studies and reverse genetics. GmNAC81-overexpressing lines displayed accelerated flowering and leaf senescence but otherwise developed normally. The precocious leaf senescence of GmNAC81-overexpressing lines was associated with greater Chl loss, faster photosynthetic decay and higher expression of hydrolytic enzyme-encoding GmNAC81 target genes, including the vacuolar processing enzyme (VPE), an executioner of vacuole-triggered programmed cell death (PCD). Conversely, virus-induced gene silencing-mediated silencing of GmNAC81 delayed leaf senescence and was associated with reductions in Chl loss, lipid peroxidation and the expression of GmNAC81 direct targets. Promoter-reporter studies revealed that the expression pattern of GmNAC81 was associated with senescence in soybean leaves. Our data indicate that GmNAC81 is a positive regulator of age-dependent senescence and may integrate osmotic stress- and ER stress-induced PCD responses with natural leaf senescence through the GmNAC81/VPE regulatory circuit.
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Affiliation(s)
- Maiana Reis Pimenta
- National Institute of Science and Technology in Plant-Pest Interactions, Universidade Federal de Viçosa, 36570.000, Viçosa, MG, Brazil Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570.000, Viçosa, MG, Brazil
| | - Priscila Alves Silva
- National Institute of Science and Technology in Plant-Pest Interactions, Universidade Federal de Viçosa, 36570.000, Viçosa, MG, Brazil
| | - Giselle Camargo Mendes
- National Institute of Science and Technology in Plant-Pest Interactions, Universidade Federal de Viçosa, 36570.000, Viçosa, MG, Brazil
| | - Janaína Roberta Alves
- National Institute of Science and Technology in Plant-Pest Interactions, Universidade Federal de Viçosa, 36570.000, Viçosa, MG, Brazil Departamento de Bioquímica e Biologia Molecular/Bioagro, Universidade Federal de Viçosa, 36570.000, Viçosa, MG, Brazil
| | - Hanna Durso Neves Caetano
- National Institute of Science and Technology in Plant-Pest Interactions, Universidade Federal de Viçosa, 36570.000, Viçosa, MG, Brazil Departamento de Bioquímica e Biologia Molecular/Bioagro, Universidade Federal de Viçosa, 36570.000, Viçosa, MG, Brazil
| | - Joao Paulo Batista Machado
- National Institute of Science and Technology in Plant-Pest Interactions, Universidade Federal de Viçosa, 36570.000, Viçosa, MG, Brazil Departamento de Bioquímica e Biologia Molecular/Bioagro, Universidade Federal de Viçosa, 36570.000, Viçosa, MG, Brazil
| | - Otavio José Bernardes Brustolini
- National Institute of Science and Technology in Plant-Pest Interactions, Universidade Federal de Viçosa, 36570.000, Viçosa, MG, Brazil Departamento de Bioquímica e Biologia Molecular/Bioagro, Universidade Federal de Viçosa, 36570.000, Viçosa, MG, Brazil
| | - Paola Avelar Carpinetti
- National Institute of Science and Technology in Plant-Pest Interactions, Universidade Federal de Viçosa, 36570.000, Viçosa, MG, Brazil Departamento de Bioquímica e Biologia Molecular/Bioagro, Universidade Federal de Viçosa, 36570.000, Viçosa, MG, Brazil
| | - Bruno Paes Melo
- National Institute of Science and Technology in Plant-Pest Interactions, Universidade Federal de Viçosa, 36570.000, Viçosa, MG, Brazil Departamento de Bioquímica e Biologia Molecular/Bioagro, Universidade Federal de Viçosa, 36570.000, Viçosa, MG, Brazil
| | - José Cleydson Ferreira Silva
- National Institute of Science and Technology in Plant-Pest Interactions, Universidade Federal de Viçosa, 36570.000, Viçosa, MG, Brazil Departamento de Bioquímica e Biologia Molecular/Bioagro, Universidade Federal de Viçosa, 36570.000, Viçosa, MG, Brazil
| | - Gustavo Leão Rosado
- National Institute of Science and Technology in Plant-Pest Interactions, Universidade Federal de Viçosa, 36570.000, Viçosa, MG, Brazil Departamento de Bioquímica e Biologia Molecular/Bioagro, Universidade Federal de Viçosa, 36570.000, Viçosa, MG, Brazil
| | - Márcia Flores Silva Ferreira
- National Institute of Science and Technology in Plant-Pest Interactions, Universidade Federal de Viçosa, 36570.000, Viçosa, MG, Brazil Departamento de Biologia, Universidade Federal do Espírito Santo, 29500.000, Alegre, ES, Brazil
| | - Maximillir Dal-Bianco
- National Institute of Science and Technology in Plant-Pest Interactions, Universidade Federal de Viçosa, 36570.000, Viçosa, MG, Brazil Departamento de Bioquímica e Biologia Molecular/Bioagro, Universidade Federal de Viçosa, 36570.000, Viçosa, MG, Brazil
| | | | | | - Humberto Josué Oliveira Ramos
- National Institute of Science and Technology in Plant-Pest Interactions, Universidade Federal de Viçosa, 36570.000, Viçosa, MG, Brazil Departamento de Bioquímica e Biologia Molecular/Bioagro, Universidade Federal de Viçosa, 36570.000, Viçosa, MG, Brazil
| | - Elizabeth Pacheco Batista Fontes
- National Institute of Science and Technology in Plant-Pest Interactions, Universidade Federal de Viçosa, 36570.000, Viçosa, MG, Brazil Departamento de Bioquímica e Biologia Molecular/Bioagro, Universidade Federal de Viçosa, 36570.000, Viçosa, MG, Brazil
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DeBlasio SL, Chavez JD, Alexander MM, Ramsey J, Eng JK, Mahoney J, Gray SM, Bruce JE, Cilia M. Visualization of Host-Polerovirus Interaction Topologies Using Protein Interaction Reporter Technology. J Virol 2016; 90:1973-87. [PMID: 26656710 PMCID: PMC4733995 DOI: 10.1128/jvi.01706-15] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2015] [Accepted: 11/30/2015] [Indexed: 01/08/2023] Open
Abstract
UNLABELLED Demonstrating direct interactions between host and virus proteins during infection is a major goal and challenge for the field of virology. Most protein interactions are not binary or easily amenable to structural determination. Using infectious preparations of a polerovirus (Potato leafroll virus [PLRV]) and protein interaction reporter (PIR), a revolutionary technology that couples a mass spectrometric-cleavable chemical cross-linker with high-resolution mass spectrometry, we provide the first report of a host-pathogen protein interaction network that includes data-derived, topological features for every cross-linked site that was identified. We show that PLRV virions have hot spots of protein interaction and multifunctional surface topologies, revealing how these plant viruses maximize their use of binding interfaces. Modeling data, guided by cross-linking constraints, suggest asymmetric packing of the major capsid protein in the virion, which supports previous epitope mapping studies. Protein interaction topologies are conserved with other species in the Luteoviridae and with unrelated viruses in the Herpesviridae and Adenoviridae. Functional analysis of three PLRV-interacting host proteins in planta using a reverse-genetics approach revealed a complex, molecular tug-of-war between host and virus. Structural mimicry and diversifying selection-hallmarks of host-pathogen interactions-were identified within host and viral binding interfaces predicted by our models. These results illuminate the functional diversity of the PLRV-host protein interaction network and demonstrate the usefulness of PIR technology for precision mapping of functional host-pathogen protein interaction topologies. IMPORTANCE The exterior shape of a plant virus and its interacting host and insect vector proteins determine whether a virus will be transmitted by an insect or infect a specific host. Gaining this information is difficult and requires years of experimentation. We used protein interaction reporter (PIR) technology to illustrate how viruses exploit host proteins during plant infection. PIR technology enabled our team to precisely describe the sites of functional virus-virus, virus-host, and host-host protein interactions using a mass spectrometry analysis that takes just a few hours. Applications of PIR technology in host-pathogen interactions will enable researchers studying recalcitrant pathogens, such as animal pathogens where host proteins are incorporated directly into the infectious agents, to investigate how proteins interact during infection and transmission as well as develop new tools for interdiction and therapy.
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Affiliation(s)
- Stacy L DeBlasio
- Boyce Thompson Institute for Plant Research, Ithaca, New York, USA USDA-Agricultural Research Service, Ithaca, New York, USA
| | - Juan D Chavez
- Department of Genome Sciences, University of Washington, Seattle, Washington, USA
| | - Mariko M Alexander
- Boyce Thompson Institute for Plant Research, Ithaca, New York, USA Department of Plant Pathology and Plant-Microbe Biology, Cornell University, Ithaca, New York, USA
| | - John Ramsey
- Boyce Thompson Institute for Plant Research, Ithaca, New York, USA
| | - Jimmy K Eng
- University of Washington Proteomics Resources, Seattle, Washington, USA
| | - Jaclyn Mahoney
- Boyce Thompson Institute for Plant Research, Ithaca, New York, USA
| | - Stewart M Gray
- USDA-Agricultural Research Service, Ithaca, New York, USA Department of Plant Pathology and Plant-Microbe Biology, Cornell University, Ithaca, New York, USA
| | - James E Bruce
- Department of Genome Sciences, University of Washington, Seattle, Washington, USA
| | - Michelle Cilia
- Boyce Thompson Institute for Plant Research, Ithaca, New York, USA USDA-Agricultural Research Service, Ithaca, New York, USA Department of Plant Pathology and Plant-Microbe Biology, Cornell University, Ithaca, New York, USA
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44
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Park CJ, Seo YS. Heat Shock Proteins: A Review of the Molecular Chaperones for Plant Immunity. THE PLANT PATHOLOGY JOURNAL 2015; 31:323-33. [PMID: 26676169 PMCID: PMC4677741 DOI: 10.5423/ppj.rw.08.2015.0150] [Citation(s) in RCA: 291] [Impact Index Per Article: 32.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/03/2015] [Revised: 09/14/2015] [Accepted: 09/14/2015] [Indexed: 05/19/2023]
Abstract
As sessile organisms, plants are exposed to persistently changing stresses and have to be able to interpret and respond to them. The stresses, drought, salinity, chemicals, cold and hot temperatures, and various pathogen attacks have interconnected effects on plants, resulting in the disruption of protein homeostasis. Maintenance of proteins in their functional native conformations and preventing aggregation of non-native proteins are important for cell survival under stress. Heat shock proteins (HSPs) functioning as molecular chaperones are the key components responsible for protein folding, assembly, translocation, and degradation under stress conditions and in many normal cellular processes. Plants respond to pathogen invasion using two different innate immune responses mediated by pattern recognition receptors (PRRs) or resistance (R) proteins. HSPs play an indispensable role as molecular chaperones in the quality control of plasma membrane-resident PRRs and intracellular R proteins against potential invaders. Here, we specifically discuss the functional involvement of cytosolic and endoplasmic reticulum (ER) HSPs/chaperones in plant immunity to obtain an integrated understanding of the immune responses in plant cells.
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Affiliation(s)
- Chang-Jin Park
- Department of Plant Biotechnology and PERI, Sejong University, Seoul 143-747,
Korea
- Corresponding author. C.-J. Park, Phone) +82-2-3408-4378, FAX) +82-2-3408-4318, E-mail) . Y.-S. Seo, Phone) +82-51-510-2267, FAX) +82-51-514-1778, E-mail:) , ORCID, Young-Su Seo, http://orcid.org/0000-0001-9191-1405, Chang-Jin Park, http://orcid.org/0000-0002-2586-8856
| | - Young-Su Seo
- Department of Microbiology, Pusan National University, Busan 609-735,
Korea
- Corresponding author. C.-J. Park, Phone) +82-2-3408-4378, FAX) +82-2-3408-4318, E-mail) . Y.-S. Seo, Phone) +82-51-510-2267, FAX) +82-51-514-1778, E-mail:) , ORCID, Young-Su Seo, http://orcid.org/0000-0001-9191-1405, Chang-Jin Park, http://orcid.org/0000-0002-2586-8856
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45
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Kørner CJ, Du X, Vollmer ME, Pajerowska-Mukhtar KM. Endoplasmic Reticulum Stress Signaling in Plant Immunity--At the Crossroad of Life and Death. Int J Mol Sci 2015; 16:26582-98. [PMID: 26556351 PMCID: PMC4661823 DOI: 10.3390/ijms161125964] [Citation(s) in RCA: 56] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2015] [Revised: 10/22/2015] [Accepted: 10/23/2015] [Indexed: 01/01/2023] Open
Abstract
Rapid and complex immune responses are induced in plants upon pathogen recognition. One form of plant defense response is a programmed burst in transcription and translation of pathogenesis-related proteins, of which many rely on ER processing. Interestingly, several ER stress marker genes are up-regulated during early stages of immune responses, suggesting that enhanced ER capacity is needed for immunity. Eukaryotic cells respond to ER stress through conserved signaling networks initiated by specific ER stress sensors tethered to the ER membrane. Depending on the nature of ER stress the cell prioritizes either survival or initiates programmed cell death (PCD). At present two plant ER stress sensors, bZIP28 and IRE1, have been described. Both sensor proteins are involved in ER stress-induced signaling, but only IRE1 has been additionally linked to immunity. A second branch of immune responses relies on PCD. In mammals, ER stress sensors are involved in activation of PCD, but it is unclear if plant ER stress sensors play a role in PCD. Nevertheless, some ER resident proteins have been linked to pathogen-induced cell death in plants. In this review, we will discuss the current understanding of plant ER stress signaling and its cross-talk with immune signaling.
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Affiliation(s)
- Camilla J Kørner
- Department of Biology, University of Alabama at Birmingham, 1300 University Blvd., Birmingham, AL 35294, USA.
| | - Xinran Du
- Department of Biology, University of Alabama at Birmingham, 1300 University Blvd., Birmingham, AL 35294, USA.
| | - Marie E Vollmer
- Department of Biology, University of Alabama at Birmingham, 1300 University Blvd., Birmingham, AL 35294, USA.
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Silva PA, Silva JCF, Caetano HDN, Machado JPB, Mendes GC, Reis PAB, Brustolini OJB, Dal-Bianco M, Fontes EPB. Comprehensive analysis of the endoplasmic reticulum stress response in the soybean genome: conserved and plant-specific features. BMC Genomics 2015; 16:783. [PMID: 26466891 PMCID: PMC4606518 DOI: 10.1186/s12864-015-1952-z] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2015] [Accepted: 09/23/2015] [Indexed: 12/22/2022] Open
Abstract
BACKGROUND Despite the relevance of the eukaryotic endoplasmic reticulum (ER)-stress response as an integrator of multiple stress signals into an adaptive response, knowledge about these ER-mediated cytoprotective pathways in soybean (Glycine max) is lacking. Here, we searched for genes involved in the highly conserved unfolded protein response (UPR) and ER stress-induced plant-specific cell death signaling pathways in the soybean genome. METHODS Previously characterized Arabidopsis UPR genes were used as prototypes for the identification of the soybean orthologs and the in silico assembly of the UPR in soybean, using eggNOG v4.0 software. Functional studies were also conducted by analyzing the transcriptional activity of soybean UPR transducers. RESULTS As a result of this search, we have provided a complete profile of soybean UPR genes with significant predicted protein similarities to A. thaliana UPR-associated proteins. Both arms of the plant UPR were further examined functionally, and evidence is presented that the soybean counterparts are true orthologs of previously characterized UPR transducers in Arabidopsis. The bZIP17/bZI28 orthologs (GmbZIP37 and GmbZIP38) and ZIP60 ortholog (GmbZIP68) from soybean have similar structural organizations as their Arabidopsis counterparts, were induced by ER stress and activated an ERSE- and UPRE-containing BiP promoter. Furthermore, the transcript of the putative substrate of GmIREs, GmbZIP68, harbors a canonical site for IRE1 endonuclease activity and was efficiently spliced under ER stress conditions. In a reverse approach, we also examined the Arabidopsis genome for components of a previously characterized ER stress-induced cell death signaling response in soybean. With the exception of GmERD15, which apparently does not possess an Arabidopsis ortholog, the Arabidopsis genome harbors conserved GmNRP, GmNAC81, GmNAC30 and GmVPE sequences that share significant structural and sequence similarities with their soybean counterparts. These results suggest that the NRP/GmNAC81 + GmNAC30/VPE regulatory circuit may transduce cell death signals in plant species other than soybean. CONCLUSIONS Our in silico analyses, along with current and previous functional data, permitted generation of a comprehensive overview of the ER stress response in soybean as a framework for functional prediction of ER stress signaling components and their possible connections with multiple stress responses.
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Affiliation(s)
- Priscila Alves Silva
- National Institute of Science and Technology in Plant-Pest Interactions and Departamento de Bioquímica e Biologia Molecular/Bioagro, Universidade Federal de Viçosa, 36570.000, Viçosa, MG, Brazil.
| | - José Cleydson F Silva
- National Institute of Science and Technology in Plant-Pest Interactions and Departamento de Bioquímica e Biologia Molecular/Bioagro, Universidade Federal de Viçosa, 36570.000, Viçosa, MG, Brazil.
| | - Hanna D N Caetano
- National Institute of Science and Technology in Plant-Pest Interactions and Departamento de Bioquímica e Biologia Molecular/Bioagro, Universidade Federal de Viçosa, 36570.000, Viçosa, MG, Brazil.
| | - Joao Paulo B Machado
- National Institute of Science and Technology in Plant-Pest Interactions and Departamento de Bioquímica e Biologia Molecular/Bioagro, Universidade Federal de Viçosa, 36570.000, Viçosa, MG, Brazil.
| | - Giselle C Mendes
- National Institute of Science and Technology in Plant-Pest Interactions and Departamento de Bioquímica e Biologia Molecular/Bioagro, Universidade Federal de Viçosa, 36570.000, Viçosa, MG, Brazil.
| | - Pedro A B Reis
- National Institute of Science and Technology in Plant-Pest Interactions and Departamento de Bioquímica e Biologia Molecular/Bioagro, Universidade Federal de Viçosa, 36570.000, Viçosa, MG, Brazil.
| | - Otavio J B Brustolini
- National Institute of Science and Technology in Plant-Pest Interactions and Departamento de Bioquímica e Biologia Molecular/Bioagro, Universidade Federal de Viçosa, 36570.000, Viçosa, MG, Brazil.
| | - Maximiller Dal-Bianco
- National Institute of Science and Technology in Plant-Pest Interactions and Departamento de Bioquímica e Biologia Molecular/Bioagro, Universidade Federal de Viçosa, 36570.000, Viçosa, MG, Brazil.
| | - Elizabeth P B Fontes
- National Institute of Science and Technology in Plant-Pest Interactions and Departamento de Bioquímica e Biologia Molecular/Bioagro, Universidade Federal de Viçosa, 36570.000, Viçosa, MG, Brazil.
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Ruberti C, Kim SJ, Stefano G, Brandizzi F. Unfolded protein response in plants: one master, many questions. CURRENT OPINION IN PLANT BIOLOGY 2015; 27:59-66. [PMID: 26149756 PMCID: PMC4618186 DOI: 10.1016/j.pbi.2015.05.016] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2015] [Revised: 05/13/2015] [Accepted: 05/15/2015] [Indexed: 05/02/2023]
Abstract
To overcome endoplasmic reticulum (ER) stress, ER-localized stress sensors actuate distinct downstream organelle-nucleus signaling pathways to invoke a cytoprotective response, known as the unfolded protein response (UPR). Compared to yeast and metazoans, plant UPR studies are more recent but nevertheless fascinating. Here we discuss recent discoveries in plant UPR, highlight conserved and unique features of the plant UPR as well as critical yet-open questions whose answers will likely make significant contributions to the understanding plant ER stress management.
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Affiliation(s)
- Cristina Ruberti
- Plant Research Laboratory, Department of Energy-Michigan State University, East Lansing, MI, USA; Department of Plant Biology, Michigan State University, East Lansing, MI, USA
| | - Sang-Jin Kim
- Plant Research Laboratory, Department of Energy-Michigan State University, East Lansing, MI, USA; Department of Plant Biology, Michigan State University, East Lansing, MI, USA
| | - Giovanni Stefano
- Plant Research Laboratory, Department of Energy-Michigan State University, East Lansing, MI, USA; Department of Plant Biology, Michigan State University, East Lansing, MI, USA
| | - Federica Brandizzi
- Plant Research Laboratory, Department of Energy-Michigan State University, East Lansing, MI, USA; Department of Plant Biology, Michigan State University, East Lansing, MI, USA.
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Guan C, Jin C, Ji J, Wang G, Li X. LcBiP, a endoplasmic reticulum chaperone binding protein gene from Lycium chinense, confers cadmium tolerance in transgenic tobacco. Biotechnol Prog 2015; 31:358-68. [PMID: 25589446 DOI: 10.1002/btpr.2046] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2014] [Revised: 12/25/2014] [Indexed: 01/03/2023]
Abstract
Cadmium (Cd) accumulation is very toxic to plants. The presence of Cd may lead to excessive production of reactive oxygen species (ROS), and then cause inhibition of plant growth. The endoplasmic reticulum chaperone binding protein (BiP) is an important functional protein, which has been shown to function as a sensor of alterations in the ER environment. BiP overexpression in plants was shown to increase drought tolerance through inhibition of ROS accumulation. Due to the above relationships, it is likely that there may be a link between Cd stress tolerance, ROS accumulation and the BiP transcript expression in plants. In this study, a BiP gene, LcBiP, from L. chinense was isolated and characterized. Overexpression of LcBiP in tobacco conferred Cd tolerance. Under Cd stress conditions, the transgenic tobacco lines exhibited better chlorophyll retention, less accumulation of ROS, longer root length, more glutathione (GSH) content, and less antioxidant enzyme activity than the wild type. These data demonstrated that LcBiP act as a positive regulator in Cd stress tolerance. It is hypothesized that the improved Cd tolerance of the transgenic tobacco plants may be due to the enhanced ROS scavenging capacity. The enhancement of GSH content might contribute to this ROS scavenging capacity in the transgenic plants. However, the underlying mechanism for BiP-mediated increase in Cd stress tolerance need to be further clarified.
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Affiliation(s)
- Chunfeng Guan
- School of Environmental Science and Engineering, Tianjin University, Tianjin, 300072, People's Republic of China
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Williams B, Verchot J, Dickman MB. When supply does not meet demand-ER stress and plant programmed cell death. FRONTIERS IN PLANT SCIENCE 2014; 5:211. [PMID: 24926295 DOI: 10.3389/fpls.2014.00211/abstract] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Received: 01/16/2014] [Accepted: 04/29/2014] [Indexed: 05/24/2023]
Abstract
The endoplasmic reticulum (ER) is the central organelle in the eukaryotic secretory pathway. The ER functions in protein synthesis and maturation and is crucial for proper maintenance of cellular homeostasis and adaptation to adverse environments. Acting as a cellular sentinel, the ER is exquisitely sensitive to changing environments principally via the ER quality control machinery. When perturbed, ER-stress triggers a tightly regulated and highly conserved, signal transduction pathway known as the unfolded protein response (UPR) that prevents the dangerous accumulation of unfolded/misfolded proteins. In situations where excessive UPR activity surpasses threshold levels, cells deteriorate and eventually trigger programmed cell death (PCD) as a way for the organism to cope with dysfunctional or toxic signals. The programmed cell death that results from excessive ER stress in mammalian systems contributes to several important diseases including hypoxia, neurodegeneration, and diabetes. Importantly, hallmark features and markers of cell death that are associated with ER stress in mammals are also found in plants. In particular, there is a common, conserved set of chaperones that modulate ER cell death signaling. Here we review the elements of plant cell death responses to ER stress and note that an increasing number of plant-pathogen interactions are being identified in which the host ER is targeted by plant pathogens to establish compatibility.
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Affiliation(s)
- Brett Williams
- Centre for Tropical Crops and Biocommodities, Queensland University of Technology Brisbane, QLD, Australia
| | - Jeanmarie Verchot
- Department of Entomology and Plant Pathology, Oklahoma State University Stillwater, OK, USA
| | - Martin B Dickman
- Department of Plant Pathology and Microbiology, Institute for Plant Genomics and Biotechnology, Texas A&M University College Station, TX, USA
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50
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Carvalho HH, Brustolini OJB, Pimenta MR, Mendes GC, Gouveia BC, Silva PA, Silva JCF, Mota CS, Soares-Ramos JRL, Fontes EPB. The molecular chaperone binding protein BiP prevents leaf dehydration-induced cellular homeostasis disruption. PLoS One 2014; 9:e86661. [PMID: 24489761 PMCID: PMC3906070 DOI: 10.1371/journal.pone.0086661] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2013] [Accepted: 12/12/2013] [Indexed: 11/18/2022] Open
Abstract
BiP overexpression improves leaf water relations during droughts and delays drought-induced leaf senescence. However, whether BiP controls cellular homeostasis under drought conditions or simply delays dehydration-induced leaf senescence as the primary cause for water stress tolerance remains to be determined. To address this issue, we examined the drought-induced transcriptomes of BiP-overexpressing lines and wild-type (WT) lines under similar leaf water potential (ψw) values. In the WT leaves, a ψw reduction of -1.0 resulted in 1339 up-regulated and 2710 down-regulated genes; in the BiP-overexpressing line 35S::BiP-4, only 334 and 420 genes were induced and repressed, respectively, at a similar leaf ψw = -1.0 MPa. This level of leaf dehydration was low enough to induce a repertory of typical drought-responsive genes in WT leaves but not in 35S::BiP-4 dehydrated leaves. The responders included hormone-related genes, functional and regulatory genes involved in drought protection and senescence-associated genes. The number of differentially expressed genes in the 35S::BiP-4 line approached the wild type number at a leaf ψw = -1.6 MPa. However, N-rich protein (NRP)- mediated cell death signaling genes and unfolded protein response (UPR) genes were induced to a much lower extent in the 35S::BiP-4 line than in the WT even at ψw = -1.6 MPa. The heatmaps for UPR, ERAD (ER-associated degradation protein system), drought-responsive and cell death-associated genes revealed that the leaf transcriptome of 35S::BiP-4 at ψw = -1.0 MPa clustered together with the transcriptome of well-watered leaves and they diverged considerably from the drought-induced transcriptome of the WT (ψw = -1.0, -1.7 and -2.0 MPa) and 35S::BiP-4 leaves at ψw = -1.6 MPa. Taken together, our data revealed that BiP-overexpressing lines requires a much higher level of stress (ψw = -1.6 MPa) to respond to drought than that of WT (ψw = -1.0). Therefore, BiP overexpression maintains cellular homeostasis under water stress conditions and thus ameliorates endogenous osmotic stress.
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Affiliation(s)
- Humberto H. Carvalho
- National Institute of Science and Technology in Plant-Pest Interactions, Universidade Federal de Viçosa, Viçosa, MG, Brazil
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, MG, Brazil
| | - Otávio J. B. Brustolini
- National Institute of Science and Technology in Plant-Pest Interactions, Universidade Federal de Viçosa, Viçosa, MG, Brazil
- Departamento de Bioquímica e Biologia Molecular/Bioagro, Universidade Federal de Viçosa, Viçosa, MG, Brazil
| | - Maiana R. Pimenta
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, MG, Brazil
| | - Giselle C. Mendes
- National Institute of Science and Technology in Plant-Pest Interactions, Universidade Federal de Viçosa, Viçosa, MG, Brazil
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, MG, Brazil
| | - Bianca C. Gouveia
- National Institute of Science and Technology in Plant-Pest Interactions, Universidade Federal de Viçosa, Viçosa, MG, Brazil
- Departamento de Bioquímica e Biologia Molecular/Bioagro, Universidade Federal de Viçosa, Viçosa, MG, Brazil
| | - Priscila A. Silva
- National Institute of Science and Technology in Plant-Pest Interactions, Universidade Federal de Viçosa, Viçosa, MG, Brazil
- Departamento de Bioquímica e Biologia Molecular/Bioagro, Universidade Federal de Viçosa, Viçosa, MG, Brazil
| | | | - Clenilso S. Mota
- National Institute of Science and Technology in Plant-Pest Interactions, Universidade Federal de Viçosa, Viçosa, MG, Brazil
| | - Juliana R. L. Soares-Ramos
- Departamento de Bioquímica e Biologia Molecular/Bioagro, Universidade Federal de Viçosa, Viçosa, MG, Brazil
| | - Elizabeth P. B. Fontes
- National Institute of Science and Technology in Plant-Pest Interactions, Universidade Federal de Viçosa, Viçosa, MG, Brazil
- Departamento de Bioquímica e Biologia Molecular/Bioagro, Universidade Federal de Viçosa, Viçosa, MG, Brazil
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