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Renou J, Li D, Lu J, Zhang B, Gineau E, Ye Y, Shi J, Voxeur A, Akary E, Marmagne A, Gonneau M, Uyttewaal M, Höfte H, Zhao Y, Vernhettes S. A cellulose synthesis inhibitor affects cellulose synthase complex secretion and cortical microtubule dynamics. PLANT PHYSIOLOGY 2024:kiae232. [PMID: 38833284 DOI: 10.1093/plphys/kiae232] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2023] [Accepted: 04/04/2024] [Indexed: 06/06/2024]
Abstract
P4B (2-phenyl-1-[4-(6-(piperidin-1-yl) pyridazin-3-yl) piperazin-1-yl] butan-1-one) is a novel cellulose biosynthesis inhibitor (CBI) discovered in a screen for molecules to identify inhibitors of Arabidopsis (Arabidopsis thaliana) seedling growth. Growth and cellulose synthesis inhibition by P4B were greatly reduced in a novel mutant for the cellulose synthase catalytic subunit gene CESA3 (cesa3pbr1). Cross-tolerance to P4B was also observed for isoxaben-resistant (ixr) cesa3 mutants ixr1-1 and ixr1-2. P4B has an original mode of action as compared with most other CBIs. Indeed, short-term treatments with P4B did not affect the velocity of cellulose synthase complexes (CSCs) but led to a decrease in CSC density in the plasma membrane without affecting their accumulation in microtubule-associated compartments. This was observed in the wild type but not in a cesa3pbr1 background. This reduced density correlated with a reduced delivery rate of CSCs to the plasma membrane but also with changes in cortical microtubule dynamics and orientation. At longer timescales, however, the responses to P4B treatments resembled those to other CBIs, including the inhibition of CSC motility, reduced growth anisotropy, interference with the assembly of an extensible wall, pectin demethylesterification, and ectopic lignin and callose accumulation. Together, the data suggest that P4B either directly targets CESA3 or affects another cellular function related to CSC plasma membrane delivery and/or microtubule dynamics that is bypassed specifically by mutations in CESA3.
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Affiliation(s)
- Julien Renou
- Université Paris-Saclay, INRAE, AgroParisTech, Institute Jean-Pierre Bourgin for Plant Sciences (IJPB), 78000 Versailles, France
| | - Deqiang Li
- Chinese Academy of Sciences Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China
- University of Chinese Academy of Sciences, Beijing 101408, China
| | - Juan Lu
- Chinese Academy of Sciences Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China
| | - Baocai Zhang
- University of Chinese Academy of Sciences, Beijing 101408, China
- State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China
| | - Emilie Gineau
- Université Paris-Saclay, INRAE, AgroParisTech, Institute Jean-Pierre Bourgin for Plant Sciences (IJPB), 78000 Versailles, France
| | - Yajin Ye
- State Key Laboratory of Tree Genetics and Breeding, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing 210037, China
| | - Jianmin Shi
- Chinese Academy of Sciences Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China
| | - Aline Voxeur
- Université Paris-Saclay, INRAE, AgroParisTech, Institute Jean-Pierre Bourgin for Plant Sciences (IJPB), 78000 Versailles, France
| | - Elodie Akary
- Université Paris-Saclay, INRAE, AgroParisTech, Institute Jean-Pierre Bourgin for Plant Sciences (IJPB), 78000 Versailles, France
| | - Anne Marmagne
- Université Paris-Saclay, INRAE, AgroParisTech, Institute Jean-Pierre Bourgin for Plant Sciences (IJPB), 78000 Versailles, France
| | - Martine Gonneau
- Université Paris-Saclay, INRAE, AgroParisTech, Institute Jean-Pierre Bourgin for Plant Sciences (IJPB), 78000 Versailles, France
| | - Magalie Uyttewaal
- Université Paris-Saclay, INRAE, AgroParisTech, Institute Jean-Pierre Bourgin for Plant Sciences (IJPB), 78000 Versailles, France
| | - Herman Höfte
- Université Paris-Saclay, INRAE, AgroParisTech, Institute Jean-Pierre Bourgin for Plant Sciences (IJPB), 78000 Versailles, France
| | - Yang Zhao
- Chinese Academy of Sciences Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China
- Faculty of Life Science and Technology, Kunming University of Science and Technology, Yunnan 650000, China
| | - Samantha Vernhettes
- Université Paris-Saclay, INRAE, AgroParisTech, Institute Jean-Pierre Bourgin for Plant Sciences (IJPB), 78000 Versailles, France
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2
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Araldi de Castro R, de Castro SGQ, Quassi de Castro SA, Piassa A, Soares GODN, Tropaldi L, Christofoletti PJ. Optimizing herbicide selection for pre-emergence control of itchgrass and cypressvine morningglory in sugarcane. JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH. PART. B, PESTICIDES, FOOD CONTAMINANTS, AND AGRICULTURAL WASTES 2024; 59:350-360. [PMID: 38736380 DOI: 10.1080/03601234.2024.2352321] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2024] [Accepted: 04/30/2024] [Indexed: 05/14/2024]
Abstract
The aim of this study was to assess the efficacy of herbicides in association to control Rottboellia exaltata and Ipomoea quamoclit during pre-emergence while also to evaluate the potential impact on the sugarcane. The experimental design employed a randomized block with seven treatments and four replications. The treatments were: 1 - no herbicide application; 2 - indaziflam + sulfentrazone; 3 - indaziflam + diclosulam; 4 - indaziflam + tebuthiuron; 5 - flumioxazin + diclosulam, 6 - flumioxazin + pyroxasulfone and 7 - clomazone + sulfentrazone. The evaluated parameters were: percentage of weeds control, green coverage percentage (Canopeo® system), weed biomass (g m-2), itchgrass height, and sugarcane tiller. Several herbicide associations have been proven effective alternatives for managing itchgrass and cypressvine morningglory. The most successful treatments for itchgrass control were indaziflam + tebuthiuron (100%) and indaziflam + diclosulam (97%), whereas for cypressvine morningglory, the betters were indaziflam + sulfentrazone (97%), indaziflam + diclosulam (98%), indaziflam + tebuthiuron (97%), flumioxazin + diclosulam (94%), and clomazone + sulfentrazone (96%). All treatments reduced the weed biomass, with indaziflam + tebuthiuron being the safest option for protecting sugarcane.
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Affiliation(s)
| | | | | | | | | | - Leandro Tropaldi
- Department of Plant Production, College of Agrarian Sciences and Technology, São Paulo State University (UNESP), Dracena, SP, Brazil
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Gurnani B, Natarajan R, Mohan M, Kaur K. Breaking-Down Barriers: Proposal of Using Cellulose Biosynthesis Inhibitors and Cellulase Enzyme as a Novel Treatment Modality for Vision Threatening Pythium Insidiosum Keratitis. Clin Ophthalmol 2024; 18:765-776. [PMID: 38495678 PMCID: PMC10941664 DOI: 10.2147/opth.s450665] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2023] [Accepted: 03/05/2024] [Indexed: 03/19/2024] Open
Abstract
Pythium insidiosum, an Oomycete, causes severe keratitis that endangers vision. Its clinical, morphological, and microbiological characteristics are often indistinguishable from those of fungal keratitis, earning it the moniker "parafungus". Distinctive clinical hallmarks that set it apart from other forms of keratitis include radial keratoneuritis, tentacles, marginal infiltration, and a propensity for rapid limbal spread. The therapeutic approach to Pythium keratitis (PK) has long been a subject of debate, and topical and systemic antifungals and antibacterials have been tried with limited success. Approximately 80% of these eyes undergo therapeutic keratoplasty to salvage the eye. Hence, there is a need to innovate for alternative and better medical therapy to safeguard these eyes. The resistance of Pythium to standard antifungal treatments can be attributed to the absence of ergosterol in its cell wall. Cell walls of plants and algae have cellulose as an essential constituent. Cellulose imparts strength and structure and acts as the "skeleton" of the plant. Fungal and animal cell walls typically lack cellulose. The cellular architecture of Pythium shares a similarity with plant and algal cells through the incorporation of cellulose within its cell wall structure. Inhibitors targeting cellulose biosynthesis (CBI), such as Indaziflam, Isoxaben, and Quinoxyphen, serve as critical tools for elucidating the pathways of cellulose synthesis. Furthermore, the enzymatic action of cellulase is instrumental for the extraction of proteins and DNA. To circumvent this issue, we hypothesize that CBI's and cellulase enzymes can act on the Pythium cell wall and may effectively treat PK. The available literature supporting the hypothesis and proof of concept has also been discussed. We have also discussed these drugs' molecular mechanism of action on the Pythium cell wall. We also aim to propose how these drugs can be procured and used as a potential medical management option for this devastating entity.
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Affiliation(s)
- Bharat Gurnani
- Department of Cataract, Cornea and Refractive Surgery, ASG Eye Hospital, Jodhpur, Rajasthan, 342008, India
| | - Radhika Natarajan
- Department of Cornea and Refractive Surgery, Sankara Nethralaya Medical Research Foundation, Chennai, Tamil Nadu, 600006, India
| | - Madhuvanthi Mohan
- Department of Cornea and Refractive Surgery, Sankara Nethralaya Medical Research Foundation, Chennai, Tamil Nadu, 600006, India
| | - Kirandeep Kaur
- Department of Pediatric Ophthalmology and Strabismus, ASG Eye Hospital, Jodhpur, Rajasthan, 342008, India
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Amos BK, Pook V, Prates E, Stork J, Shah M, Jacobson DA, DeBolt S. Discovery and Characterization of Fluopipamine, a Putative Cellulose Synthase 1 Antagonist within Arabidopsis. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2024; 72:3171-3179. [PMID: 38291808 PMCID: PMC10870765 DOI: 10.1021/acs.jafc.3c05199] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2023] [Revised: 01/04/2024] [Accepted: 01/12/2024] [Indexed: 02/01/2024]
Abstract
Herbicide-resistant weeds are increasingly a problem in crop fields when exposed to similar chemistry over time. To avoid future yield losses, identifying herbicidal chemistry needs to be accelerated. We screened 50,000 small molecules using a liquid-handling robot and light microscopy focusing on pre-emergent herbicides in the family of cellulose biosynthesis inhibitors. Through phenotypic, chemical, genetic, and in silico methods we uncovered 6-{[4-(2-fluorophenyl)-1-piperazinyl]methyl}-N-(2-methoxy-5-methylphenyl)-1,3,5-triazine-2,4-diamine (fluopipamine). Symptomologies support fluopipamine as a putative antagonist of cellulose synthase enzyme 1 (CESA1) from Arabidopsis (Arabidopsis thaliana). Ectopic lignification, inhibition of etiolation, phenotypes including loss of anisotropic cellular expansion, swollen roots, and live cell imaging link fluopipamine to cellulose biosynthesis inhibition. Radiolabeled glucose incorporation of cellulose decreased in short-duration experiments when seedlings were incubated in fluopipamine. To elucidate the mechanism, ethylmethanesulfonate mutagenized M2 seedlings were screened for fluopipamine resistance. Two loci of genetic resistance were linked to CESA1. In silico docking of fluopipamine, quinoxyphen, and flupoxam against various CESA1 mutations suggests that an alternative binding site at the interface between CESA proteins is necessary to preserve cellulose polymerization in compound presence. These data uncovered potential fundamental mechanisms of cellulose biosynthesis in plants along with feasible leads for herbicidal uses.
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Affiliation(s)
- B Kirtley Amos
- Electrical
and Computer Engineering, North Carolina
State University, Raleigh, North Carolina 27606, United States
- N.C.
Plant Sciences Initiative, North Carolina
State University, Raleigh, North Carolina 27606, United States
- Department
of Horticulture, University of Kentucky, Lexington, Kentucky 40546, United States
| | - Victoria Pook
- Department
of Horticulture, University of Kentucky, Lexington, Kentucky 40546, United States
| | - Erica Prates
- Biosciences
Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
- Center
for Bioenergy Innovation, Oak Ridge National
Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Jozsef Stork
- Department
of Horticulture, University of Kentucky, Lexington, Kentucky 40546, United States
| | - Manesh Shah
- Biosciences
Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
- Center
for Bioenergy Innovation, Oak Ridge National
Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Daniel A. Jacobson
- Biosciences
Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
- Center
for Bioenergy Innovation, Oak Ridge National
Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Seth DeBolt
- Department
of Horticulture, University of Kentucky, Lexington, Kentucky 40546, United States
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Liu X, Ma Z, Tran TM, Rautengarten C, Cheng Y, Yang L, Ebert B, Persson S, Miao Y. Balanced callose and cellulose biosynthesis in Arabidopsis quorum-sensing signaling and pattern-triggered immunity. PLANT PHYSIOLOGY 2023; 194:137-152. [PMID: 37647538 PMCID: PMC10756761 DOI: 10.1093/plphys/kiad473] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2023] [Accepted: 07/18/2023] [Indexed: 09/01/2023]
Abstract
The plant cell wall (CW) is one of the most important physical barriers that phytopathogens must conquer to invade their hosts. This barrier is a dynamic structure that responds to pathogen infection through a complex network of immune receptors, together with CW-synthesizing and CW-degrading enzymes. Callose deposition in the primary CW is a well-known physical response to pathogen infection. Notably, callose and cellulose biosynthesis share an initial substrate, UDP-glucose, which is the main load-bearing component of the CW. However, how these 2 critical biosynthetic processes are balanced during plant-pathogen interactions remains unclear. Here, using 2 different pathogen-derived molecules, bacterial flagellin (flg22) and the diffusible signal factor (DSF) produced by Xanthomonas campestris pv. campestris, we show a negative correlation between cellulose and callose biosynthesis in Arabidopsis (Arabidopsis thaliana). By quantifying the abundance of callose and cellulose under DSF or flg22 elicitation and characterizing the dynamics of the enzymes involved in the biosynthesis and degradation of these 2 polymers, we show that the balance of these 2 CW components is mediated by the activity of a β-1,3-glucanase (BG2). Our data demonstrate balanced cellulose and callose biosynthesis during plant immune responses.
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Affiliation(s)
- Xiaolin Liu
- School of Biological Sciences, Nanyang Technological University, Singapore 637551, Singapore
| | - Zhiming Ma
- School of Biological Sciences, Nanyang Technological University, Singapore 637551, Singapore
| | - Tuan Minh Tran
- School of Biological Sciences, Nanyang Technological University, Singapore 637551, Singapore
- Department of Biology, University of South Alabama, Mobile, AL 36688, USA
| | - Carsten Rautengarten
- School of BioSciences, University of Melbourne, Parkville, Victoria 3010, Australia
- Faculty of Biology and Biotechnology, Ruhr University Bochum, Bochum 44810, Germany
| | - Yingying Cheng
- Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore 637551, Singapore
| | - Liang Yang
- Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore 637551, Singapore
- School of Medicine, Southern University of Science and Technology, Nanshan District, Shenzhen 518055, China
| | - Berit Ebert
- School of BioSciences, University of Melbourne, Parkville, Victoria 3010, Australia
- Faculty of Biology and Biotechnology, Ruhr University Bochum, Bochum 44810, Germany
| | - Staffan Persson
- Department of Plant and Environmental Sciences (PLEN), University of Copenhagen, 1871 Frederiksberg C, Denmark
- Copenhagen Plant Science Center, University of Copenhagen, 1871 Frederiksberg C, Denmark
- Joint International Research Laboratory of Metabolic and Developmental Sciences, State Key Laboratory of Hybrid Rice, SJTU-University of Adelaide Joint Centre for Agriculture and Health, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Yansong Miao
- School of Biological Sciences, Nanyang Technological University, Singapore 637551, Singapore
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Mishra A, Cong X, Nishiura M, Hou Z. Enantioselective Synthesis of 1-Aminoindanes via [3 + 2] Annulation of Aldimines with Alkenes by Scandium-Catalyzed C-H Activation. J Am Chem Soc 2023; 145:17468-17477. [PMID: 37504799 DOI: 10.1021/jacs.3c06482] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/29/2023]
Abstract
Multisubstituted chiral 1-aminoindanes are important components in many pharmaceuticals and bioactive molecules. Therefore, the development of efficient and selective methods for the synthesis of chiral 1-aminoindanes is of great interest and importance. In principle, the asymmetric [3 + 2] annulation of aldimines with alkenes through C-H activation is the most atom-efficient and straightforward route for the construction of chiral 1-aminoindanes, but such a transformation has remained undeveloped to date probably due to the lack of suitable catalysts. Herein, we report for the first time the enantioselective [3 + 2] annulation of a wide range of aromatic aldimines and alkenes via ortho-C(sp2)-H activation by chiral half-sandwich scandium catalysts, which provides a straightforward route for the synthesis of multisubstituted chiral 1-aminoindanes. This protocol features 100% atom-efficiency, broad functional group compatibility, and high regio-, diastereo-, and enantioselectivity (up to >19:1 dr and 99:1 er). Remarkably, by fine-tuning the sterics of the chiral ligand around the catalyst metal center, the diastereodivergent asymmetric [3 + 2] annulation of aldimines and styrenes has been achieved with a high level of diastereo- and enantioselectivity, offering an efficient method for the synthesis of both the trans and cis diastereomers of a novel class of chiral 1-aminoindane derivatives containing two contiguous stereocenters from the same set of starting materials. Moreover, the asymmetric [3 + 2] annulation of aldimines with aliphatic α-olefins, norbornene, and 1,3-dienes has also been achieved.
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Affiliation(s)
- Aniket Mishra
- Advanced Catalysis Research Group, RIKEN Center for Sustainable Resource Science, Wako, Saitama 351-0198, Japan
| | - Xuefeng Cong
- Advanced Catalysis Research Group, RIKEN Center for Sustainable Resource Science, Wako, Saitama 351-0198, Japan
| | - Masayoshi Nishiura
- Advanced Catalysis Research Group, RIKEN Center for Sustainable Resource Science, Wako, Saitama 351-0198, Japan
- Organometallic Chemistry Laboratory, RIKEN Cluster for Pioneering Research, Wako, Saitama 351-0198, Japan
| | - Zhaomin Hou
- Advanced Catalysis Research Group, RIKEN Center for Sustainable Resource Science, Wako, Saitama 351-0198, Japan
- Organometallic Chemistry Laboratory, RIKEN Cluster for Pioneering Research, Wako, Saitama 351-0198, Japan
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Dutra FB, Almeida LS, Pinto GCV, Furlaneto LF, Souza TKS, Viveiros E, Piotrowski I, Piña-Rodrigues FCM, Silva JMS. Pre-emergent indaziflam can enhance forest seed germination in direct seeding? BRAZ J BIOL 2023; 83:e268716. [PMID: 37042910 DOI: 10.1590/1519-6984.268716] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2022] [Accepted: 03/06/2023] [Indexed: 04/13/2023] Open
Abstract
Pre-emergent herbicides can contribute to the control of weed competition in direct seeding restoration, however it is necessary to evaluate their effects on seeds of native tropical forest species. The aim of the study was to assess the potential impact of the herbicide indaziflam on the germination of 17 forest species. For this, a dosage of 180 mL of the product in 200L of water was compared to the control without herbicide. The degree of sensitivity of each species was calculated by a ratio between the percentage of germination with herbicide (GH) and the control without herbicide (GC) classifying them as: extremely sensitive (ES= (GH/GC) <0.25), sensitive (S=0.25< (GH/GC) <0.50), low sensitivity (LS=0.50< (GH/GC) <0.75), indifferent (I=0.75< (GH/GC) <1.0) and potentiated (P= (GH/GC) >1). The herbicide promoted a significant reduction in mean germination in 35% (n=6) of the species and 59% (n = 10) were sensitive or extremely sensitive to indaziflam, and only three did not germinate. On the other hand, 29.4% (n=5) showed low sensitivity or indifference to the herbicide, while seed germination was slightly increased by indaziflam to 11.7% (n=2). Pre-emergent indaziflam can be recommended in direct seeding restoration, as only 17.6% (n=3) of the species were inhibited by pre-emergent. However, the effect of indaziflam varies by species and requires further studies to support large-scale use in direct seeding.
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Affiliation(s)
- F B Dutra
- Universidade Federal de São Carlos - UFSCar, Programa de Pós-graduação em Planejamento e Uso de Recursos Renováveis, Sorocaba, SP, Brasil
| | - L S Almeida
- Universidade Federal de Viçosa - UFV, Departamento de Engenharia Florestal, Viçosa, MG, Brasil
| | - G C V Pinto
- Universidade Federal de São Carlos - UFSCar, Graduação em Engenharia Florestal, Sorocaba, SP, Brasil
| | - L F Furlaneto
- Universidade Federal de São Carlos - UFSCar, Graduação em Engenharia Florestal, Sorocaba, SP, Brasil
| | - T K S Souza
- Universidade Federal de São Carlos - UFSCar, Graduação em Engenharia Florestal, Sorocaba, SP, Brasil
| | - E Viveiros
- Universidade Federal de São Carlos - UFSCar, Programa de Pós-graduação em Planejamento e Uso de Recursos Renováveis, Sorocaba, SP, Brasil
- AES Brasil, Bauru, SP, Brasil
| | - I Piotrowski
- Universidade Federal de São Carlos - UFSCar, Departamento de Ciências Ambientais, Sorocaba, SP, Brasil
| | - F C M Piña-Rodrigues
- Universidade Federal de São Carlos - UFSCar, Departamento de Ciências Ambientais, Sorocaba, SP, Brasil
| | - J M S Silva
- Universidade Federal de São Carlos - UFSCar, Departamento de Ciências Ambientais, Sorocaba, SP, Brasil
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Shahari MSB, Dolzhenko AV. A closer look at N2,6-substituted 1,3,5-triazine-2,4-diamines: Advances in synthesis and biological activities. Eur J Med Chem 2022; 241:114645. [DOI: 10.1016/j.ejmech.2022.114645] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2022] [Revised: 07/19/2022] [Accepted: 07/29/2022] [Indexed: 11/03/2022]
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Tissot AG, Granek EF, Thompson AW, Hladik ML, Moran PW, Scully-Engelmeyer K. The silence of the clams: Forestry registered pesticides as multiple stressors on soft-shell clams. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 819:152053. [PMID: 34856270 DOI: 10.1016/j.scitotenv.2021.152053] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/26/2021] [Revised: 11/24/2021] [Accepted: 11/24/2021] [Indexed: 06/13/2023]
Abstract
Contaminants are ubiquitous in the environment, often reaching aquatic systems. Combinations of forestry use pesticides have been detected in both water and aquatic organism tissue samples in coastal systems. Yet, most toxicological studies focus on the effects of these pesticides individually, at high doses, and over acute time periods, which, while key for establishing toxicity and safe limits, are rarely environmentally realistic. We examined chronic (90 days) exposure by the soft-shell clam, Mya arenaria, to environmentally relevant concentrations of four pesticides registered for use in forestry (atrazine, 5 μg/L; hexazinone, 0.3 μg/L; indaziflam, 5 μg/L; and bifenthrin, 1.5 μg/g organic carbon (OC)). Pesticides were tested individually and in combination, except bifenthrin, which was tested only in combination with the other three. We measured shell growth and condition index every 30 days, as well as feeding rates, mortality, and chemical concentrations in tissue from a subset of clams at the end of the experiment to measure contaminant uptake. Indaziflam caused a high mortality rate (max. 36%), followed by atrazine (max. 27%), both individually as well as in combination with other pesticides. Additionally, indaziflam concentrations in tissue (61.70-152.56 ng/g) were higher than those of atrazine (26.48-48.56 ng/g), despite equal dosing concentrations, indicating higher tissue accumulation. Furthermore, clams exposed to indaziflam and hexazinone experienced reduced condition index and clearance rates individually and in combination with other compounds; however, the two combined did not result in significant mortality. These two compounds, even at environmentally relevant concentrations, affected a non-target organism and, in the case of the herbicide indaziflam, accumulated in clam tissue and appeared more toxic than other tested pesticides. These findings underscore the need for more comprehensive studies combining multiple compounds at relevant concentrations to understand their impacts on aquatic ecosystems.
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Affiliation(s)
- Alexandra G Tissot
- Department of Environmental Science and Management, Portland State University, 1719 SW 10th Ave, SRTC Building, Room 218, Portland, OR 97201, United States.
| | - Elise F Granek
- Department of Environmental Science and Management, Portland State University, 1719 SW 10th Ave, SRTC Building, Room 218, Portland, OR 97201, United States
| | - Anne W Thompson
- Department of Biology, Portland State University, 1719 SW 10th Ave, SRTC Building, Room 246, Portland, OR 97201, United States
| | - Michelle L Hladik
- U.S. Geological Survey, California Water Science Center, 6000 J St, Placer Hall, Sacramento, CA 95819, United States
| | - Patrick W Moran
- U.S. Geological Survey, 934 Broadway, Suite 300, Tacoma, WA 98402, United States
| | - Kaegan Scully-Engelmeyer
- Department of Environmental Science and Management, Portland State University, 1719 SW 10th Ave, SRTC Building, Room 218, Portland, OR 97201, United States
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Duke SO, Dayan FE. The search for new herbicide mechanisms of action: Is there a 'holy grail'? PEST MANAGEMENT SCIENCE 2022; 78:1303-1313. [PMID: 34796620 DOI: 10.1002/ps.6726] [Citation(s) in RCA: 33] [Impact Index Per Article: 16.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2021] [Accepted: 11/18/2021] [Indexed: 05/26/2023]
Abstract
New herbicide modes of action (MOAs) are in great demand because of the burgeoning evolution of resistance of weeds to existing commercial herbicides. This need has been exacerbated by the almost complete lack of introduction of herbicides with new MOAs for almost 40 years. There are many highly phytotoxic compounds with MOAs not represented by commercial herbicides, but neither these compounds nor structural analogues have been developed as herbicides for a variety of reasons. Natural products provide knowledge of many MOAs that are not being utilized by commercial herbicides. Other means of identifying new herbicide targets are discussed, including pharmaceutical target sites and metabolomic and proteomic information, as well as the use of artificial intelligence and machine learning to predict herbicidal compounds with new MOAs. Information about several newly discovered herbicidal compounds with new MOAs is summarized. The currently increased efforts of both established companies and start-up companies are likely to result in herbicides with new MOAs that can be used in herbicide resistance management within the next decade. © 2021 Society of Chemical Industry.
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Affiliation(s)
- Stephen O Duke
- National Center for Natural Products Research, School of Pharmacy, University of Mississippi, University, Oxford, MS, USA
| | - Franck E Dayan
- Department of Agricultural Biology, Colorado State University, Fort Collins, CO, USA
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11
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Yu P, Marble SC. Practice in Nursery Weed Control-Review and Meta-Analysis. FRONTIERS IN PLANT SCIENCE 2022; 12:807736. [PMID: 35185957 PMCID: PMC8847678 DOI: 10.3389/fpls.2021.807736] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/02/2021] [Accepted: 12/30/2021] [Indexed: 06/14/2023]
Abstract
Weeds, as one of the biggest challenges in the nursery industry, have been controlled by various methods, such as chemical and non-chemical practices. Although these practices have been widely established and tested to control weeds, there is no systematic or meta-analysis review to provide quantitative weed control efficacy information of these practices. To provide a systematic understanding of weed control practices in nursery production, a visualization research trend, a systematic review, and a meta-analysis were conducted. A total of 267 relevant studies were included for the research trend and 83 were included in the meta-analysis. The results in this study showed that interests in nursery weed control have switched dramatically in the past 2-3 decades (1995-2021) from chemical dominant weed control to chemical coexistent with non-chemical techniques. Developing new management tactics and implementing diverse combinations of integrated weed management present the future trend for weed control. The systematic review results showed that chemical methods had the highest weed control efficacy, while non-chemical had the lowest on average, nonetheless, all three weed control practices (chemical, non-chemical, and combined) reduced the weed biomass and density significantly compared with when no strategy was employed. Weed control challenges could be the catalyst for the development of new non-chemical and integrated weed control techniques.
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12
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Larson RT, McFarlane HE. Small but Mighty: An Update on Small Molecule Plant Cellulose Biosynthesis Inhibitors. PLANT & CELL PHYSIOLOGY 2021; 62:1828-1838. [PMID: 34245306 DOI: 10.1093/pcp/pcab108] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2021] [Revised: 06/14/2021] [Accepted: 07/09/2021] [Indexed: 06/13/2023]
Abstract
Cellulose is one of the most abundant biopolymers on Earth. It provides mechanical support to growing plant cells and important raw materials for paper, textiles and biofuel feedstocks. Cellulose biosynthesis inhibitors (CBIs) are invaluable tools for studying cellulose biosynthesis and can be important herbicides for controlling weed growth. Here, we review CBIs with particular focus on the most widely used CBIs and recently discovered CBIs. We discuss the effects of these CBIs on plant growth and development and plant cell biology and summarize what is known about the mode of action of these different CBIs.
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Affiliation(s)
- Raegan T Larson
- Department of Cell and Systems Biology, University of Toronto, 25 Harbord Street, Toronto, ON M5S 3G5, Canada
| | - Heather E McFarlane
- Department of Cell and Systems Biology, University of Toronto, 25 Harbord Street, Toronto, ON M5S 3G5, Canada
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13
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Ekeleme F, Dixon A, Atser G, Hauser S, Chikoye D, Korie S, Olojede A, Agada M, Olorunmaiye PM. Increasing cassava root yield on farmers' fields in Nigeria through appropriate weed management. CROP PROTECTION (GUILDFORD, SURREY) 2021; 150:105810. [PMID: 34866731 PMCID: PMC8505754 DOI: 10.1016/j.cropro.2021.105810] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/25/2020] [Revised: 08/09/2021] [Accepted: 08/25/2021] [Indexed: 06/13/2023]
Abstract
Weed competition is the major biological stress affecting cassava production in smallholder farms in West and Central Africa, where yields are low compared with those in Asia and Latin America. Options for improved weed management are crucial in increasing productivity. Selected pre- and post-emergence herbicides, integrated with appropriate tillage and plant spacing, were tested in 96 sites in four locations in Nigeria, 24 in 2016 and 72 in 2017. Trials were split plots with six pre-emergence herbicides and no post-emergence treatment as main plots. Subplot treatments were four post-emergence herbicides, weeding with a motorized rotary weeder, short- and long-handled hoes, and no post-emergence weed control, i.e., regardless of pre-emergence treatments. Indaziflam-based treatments, irrespective of post-emergence treatment, and flumioxazin + pyroxasulfone applied pre-emergence followed by one weeding with a long-handled hoe provided >80% control of major broadleaf and grass weeds. Compared with herbicide use, farmer control practices (53%) were not efficient in controlling weeds. The highest root yield was produced where (1) s-metolachlor was combined with atrazine, and one weeding with a long-handled hoe or clethodim with lactofen, and (2) indaziflam + isoxaflutole was combined with glyphosate. An increase in root yield from 3.41 to 14.2 t ha-1 and from 3.0 to 11.99 t ha-1 was obtained where herbicides were used compared with farmers' practice and manual hoe weeding. Our results showed that integrating good agronomic practices with safe and effective use of appropriate herbicides can result in root yield >20 t ha-1. i.e., twice the national average root yield of 8-12 t ha-1, with >50% net profit. The use of appropriate herbicides can reduce the amount of manual labor required and improve livelihoods, specifically for women and children. Smallholder cassava farmers would require continuous training on the safe use and handling of herbicides to improve efficiency and prevent adverse effects on humans and the environment.
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Affiliation(s)
- Friday Ekeleme
- International Institute of Tropical Agriculture, PMB 5320, Ibadan, Oyo State, Nigeria
| | - Alfred Dixon
- International Institute of Tropical Agriculture, PMB 5320, Ibadan, Oyo State, Nigeria
| | - Godwin Atser
- International Institute of Tropical Agriculture, PMB 5320, Ibadan, Oyo State, Nigeria
| | - Stefan Hauser
- International Institute of Tropical Agriculture, PMB 5320, Ibadan, Oyo State, Nigeria
| | - David Chikoye
- International Institute of Tropical Agriculture, PMB 5320, Ibadan, Oyo State, Nigeria
| | - Sam Korie
- International Institute of Tropical Agriculture, PMB 5320, Ibadan, Oyo State, Nigeria
| | - Adeyemi Olojede
- National Root Crops Research Institute, PMB 7006, Umuahia, Abia State, Nigeria
| | - Mary Agada
- Federal University of Agriculture, Makurdi, PMB 2373, Benue State, Nigeria
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14
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Vinicius da Silva P, Rodrigues Milagres Viana H, Rafael Malardo M, Coura Oliveira M, de Carvalho Dias R, Maris Ináci E, Andrea Monquero P, Jacob Christoffoleti P. Indaziflam: Control Effectiveness in Monocotyledonous and Eudicotyledonous Weeds as a Function of Herbicide Dose and Soil Texture. Pak J Biol Sci 2021; 24:1119-1129. [PMID: 34842383 DOI: 10.3923/pjbs.2021.1119.1129] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
<b>Background and Objective:</b> The indaziflam herbicide has efficiency in the control of monocotyledons weeds and is recommended for some eudicotyledonous species. However, the efficiency of the control can vary to the detriment of the species, dose and soil texture. Therefore, the objective of the present work was to evaluate the effectiveness of the control of indaziflam herbicide for weeds species <i>Mucuna aterrima</i>, <i>Sorghum halepense</i>, <i>Ipomoea purpurea</i>, <i>Rottboellia exaltata</i>, <i>Urochloa decumbens</i>, <i>Merremia aegyptia</i>, <i>Cenchrus echinatus</i>, <i>Digitaria horizontalis</i>, <i>Panicum maximum</i>, <i>Tridax procumbens</i>, <i>Urochloa plantaginea</i> and <i>Eleusine indica</i>, besides elaborating the calculation of DL<sub>80</sub>, DL<sub>90</sub> and DL<sub>95</sub> of the product in two types of soil. Material and Methods: Thus, experiments were carried out in a greenhouse, isolated for each weed species, in a completely randomized experimental design, with four replications and a 10×2 factorial scheme, with ten doses of the herbicide indaziflam (0 D, 1/16 D, 1/8 D, 1/4 D, 1/2 D, D, 2 D, 4 D, 8 D, 16 D, being D = 100 g ha<sup>1</sup>), applied in pre-emergence and two contrasting soil textures (clayey and sandy). At 7, 14, 21, 28, 35, 42, 49 and 56 days after weed emergence (DAE), visual control assessments were performed and in the last evaluation, the dry mass of the aerial part was performed. <b>Results:</b> The weeds of the Poaceae family showed greater susceptibility to the indaziflam herbicide, on the other hand, the <i>Mucuna aterrima</i>, <i>Ipomoea purpurea</i> and <i>Merremia aegyptia </i>weeds required a higher dose of active ingredient to be controlled efficiently. <b>Conclusion:</b> In general, the current study concluded that a lesser amount of active ingredient was needed in sandy soil than in clayey soils to promote adequate weed control. Therefore, the difference in the susceptibility of the studied plants as function of dose indaziflam, weeds species and soil texture.
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Mendes KF, Soares MB, Sousa RND, Mielke KC, Brochado MGDS, Tornisielo VL. Indaziflam sorption-desorption and its three metabolites from biochars- and their raw feedstock-amended agricultural soils using radiometric technique. JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH. PART. B, PESTICIDES, FOOD CONTAMINANTS, AND AGRICULTURAL WASTES 2021; 56:731-740. [PMID: 34190026 DOI: 10.1080/03601234.2021.1941559] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
This study aimed to characterize the effect of amending soils with biochars derived from soybean residues, sugarcane bagasse, and wood chips on the sorption-desorption of indaziflam and indaziflam-triazinediamine (FDAT), indaziflam-triazine-indanone (ITI), and indaziflam-carboxylic acid (ICA) metabolites applied to soils from three Midwestern U.S. states, a silt loam and a silty clay loam. Biochars produced from different feedstock were used as soil amendments and compared with raw feedstock. Sorption-desorption experiments of indaziflam and its three metabolites were performed using the batch equilibration method and analyzed for 14C activity by liquid scintillation counting (radiometric technique). In all soils, the use of organic amendments promoted greater sorption and less desorption of indaziflam and ITI. The addition of biochar to soils promoted greater sorption of the four tested chemical products compared with the corresponding raw materials. Among the biochars, grape wood chips showed greater potential in sorb indaziflam and ITI. In general, none of the biochars affected the sorption and desorption of FDAT and ICA. Characterization of biochar to be used as a soil amendment (immobilizer) is highly recommended prior to field addition to optimize the sorption process and to prevent increased soil and water contamination of indaziflam and its metabolites following biochar addition.
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Affiliation(s)
| | - Matheus Bortolanza Soares
- Escola Superior de Agricultura "Luiz de Queiroz", Universidade de São Paulo, Piracicaba, São Paulo, Brazil
| | - Rodrigo Nogueira de Sousa
- Escola Superior de Agricultura "Luiz de Queiroz", Universidade de São Paulo, Piracicaba, São Paulo, Brazil
| | - Kamila Cabral Mielke
- Departamento de Agronomia, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
| | | | - Valdemar Luiz Tornisielo
- Centro de Energia Nuclear na Agricultura, Universidade de São Paulo, Piracicaba, São Paulo, Brazil
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16
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Tamogami S, Agrawal GK, Rakwal R. Fluorescent labeling of the root cap cells with the bioactive NBD-S chemical probe based on the cellulose biosynthesis inhibition herbicides. Biochem Biophys Rep 2021; 27:101063. [PMID: 34258397 PMCID: PMC8255175 DOI: 10.1016/j.bbrep.2021.101063] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2021] [Revised: 06/15/2021] [Accepted: 06/24/2021] [Indexed: 11/30/2022] Open
Abstract
Development of the methods to examine the molecular targets of biologically active compounds is one of the most important subjects in experimental biology/biochemistry. To evaluate the usability of the (7-nitro-2,1,3-benzoxadiazole)-thioether (NBD-S) probe for this purpose, bioactive chemical probe (1) as the cellulose biosynthesis (CB) inhibitor was synthesized and tested. As a result, a variety of fluorescently-labeled particles and organelles were found in the columella root cap cells of radish plants. Of note, well-defined cellular organelles were clearly recognized in the detaching root cap cells (border-like cells). These results imply that the bioactive NBD-S chemical probe could be a valuable direct-labeling reagent. Analysis of these fluorescent substances would be helpful in providing new information on defined molecular targets and events. •Nobel S-NBD type chemical probe for cellulose biosynthesis inhibitors was prepared. •This S-NBD type probe was designed for triaziflam and indaziflam. •This S-NBD type probe labeled columella and detaching root cap cells fluorescent. •S-NBD probe would be practical as a target exploring tool compound.
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Key Words
- CB, cellulose biosynthesis
- CW, cell wall
- Chemical probe
- Cys, cysteine
- DIEA, N,N-diisopropylethylamine
- DMSO, N,N-dimethylsulfoxide
- Fluorescence
- HEPES, 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid
- Indaziflam
- Lys, lysine
- NBD
- NBD, nitrobenzoxadaizole
- NBD-Cl, 4-chloro-7-nitro-2,1,3-benzoxadiazole
- NBD-N, (7-nitro-2,1,3-benzoxadiazole)-amine
- NBD-O, (7-nitro-2,1,3-benzoxadiazole)-ether
- NBD-S, (7-nitro-2,1,3-benzoxadiazole)-thioether
- Root cap
- Triaziflam
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Affiliation(s)
- Shigeru Tamogami
- Laboratory of Biologically Active Compounds, Department of Biological Production, Akita Prefectural University, Akita 010-0195, Japan
| | - Ganesh K Agrawal
- Research Laboratory for Biotechnology and Biochemistry (RLABB), Kathmandu, Nepal.,GRADE Academy Private Limited, Adarsh Nagar-13, Birgunj, Nepal
| | - Randeep Rakwal
- Research Laboratory for Biotechnology and Biochemistry (RLABB), Kathmandu, Nepal.,GRADE Academy Private Limited, Adarsh Nagar-13, Birgunj, Nepal.,Faculty of Health and Sport Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki, Japan
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17
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Mendes KF, Furtado IF, Sousa RND, Lima ADC, Mielke KC, Brochado MGDS. Cow bonechar decreases indaziflam pre-emergence herbicidal activity in tropical soil. JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH. PART. B, PESTICIDES, FOOD CONTAMINANTS, AND AGRICULTURAL WASTES 2021; 56:532-539. [PMID: 33950786 DOI: 10.1080/03601234.2021.1916302] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
The addition of carbonaceous material such as cow bonechar to the soil can affect the availability of applied pre-emergent herbicides such as indaziflam. However, how cow bonechar affects the bioavailability of indaziflam is not yet known. The aim of this study was to evaluate the effect of cow bonechar on herbicidal activity of indaziflam on weeds in a tropical soil. Cow bonechar was added homogeneously to top soil, at 1, 2, 5, 10, and 20 t ha-1, in addition to treatment with unamended soil. At 21 days after indaziflam (75 g ha-1) application, injury weed levels, weed species that emerged spontaneously were identified and the weeds present in each sampling unit were collected. Only 1.4 t ha-1 cow bonechar added to soil was enough to reduce the weed injury level by 50%. From the addition of 2 t ha-1 cow bonechar the application of indaziflam was not efficient to weed control, being equivalent to treatments without herbicide application. Eight weed species (3 monocots and 5 dicots) were identified in all treatments. Eleusine indica and Digitaria horizontalis accounted for about 99.7% of the entire infestation of the weed community. Cow bonechar decreases indaziflam pre-emergence herbicidal activity in tropical soil for weed control, most likely due to the high sorption and unavailability of the product in the soil solution.
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18
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Huang L, Zhang C. The Mode of Action of Endosidin20 Differs from That of Other Cellulose Biosynthesis Inhibitors. PLANT & CELL PHYSIOLOGY 2021; 61:2139-2152. [PMID: 33104193 DOI: 10.1093/pcp/pcaa136] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2020] [Accepted: 10/11/2020] [Indexed: 06/11/2023]
Abstract
Endosidin20 (ES20) was recently identified as a cellulose biosynthesis inhibitor (CBI) that targets the catalytic domain of CELLULOSE SYNTHASE 6 (CESA6) and thus inhibits the growth of Arabidopsis thaliana. Here, we characterized the effects of ES20 on the growth of other plant species and found that ES20 is a broad-spectrum plant growth inhibitor. We tested the inhibitory effects of previously characterized CBIs (isoxaben, indaziflam and C17) on the growth of Arabidopsis cesa6 mutants that have reduced sensitivity to ES20. We found that most of these mutants are sensitive to isoxaben, indaziflam and C17, indicating that these tested CBIs have a different mode of action than ES20. ES20 also has a synergistic inhibitory effect on plant growth when jointly applied with other CBIs, further confirming that ES20 has a different mode of action than isoxaben, indaziflam and C17. We demonstrated that plants carrying two missense mutations conferring resistance to ES20 and isoxaben can tolerate the dual inhibitory effects of these CBIs when combined. ES20 inhibits Arabidopsis growth in growth medium and in soil following direct spraying. Therefore, our results pave the way for using ES20 as a broad-spectrum herbicide, and for the use of gene-editing technologies to produce ES20-resistant crop plants.
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Affiliation(s)
- Lei Huang
- Department of Botany and Plant Pathology, Purdue University, 915 W. State Street, West Lafayette, IN 47907, USA
- Purdue Center for Plant Biology, Purdue University, 610 Purdue Mall, West Lafayette, IN 47907, USA
| | - Chunhua Zhang
- Department of Botany and Plant Pathology, Purdue University, 915 W. State Street, West Lafayette, IN 47907, USA
- Purdue Center for Plant Biology, Purdue University, 610 Purdue Mall, West Lafayette, IN 47907, USA
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19
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Eckelmann D, Augustin T, Leake C. Isomeric stability of indaziflam and major degradation products in the environment. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 737:140223. [PMID: 32569903 DOI: 10.1016/j.scitotenv.2020.140223] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2020] [Revised: 06/12/2020] [Accepted: 06/12/2020] [Indexed: 06/11/2023]
Abstract
Understanding the isomeric behavior of active ingredients in the soil and water environment is the first and a major part of deriving an exposure assessment. Whilst a variety of approaches have been taken previously, with the new regulatory framework for the risk assessment of isomeric plant protection compounds recently published by EFSA, (European Food Safety Authority) there will in future be a more consistent approach which has been taken here. For indaziflam (IAF), the alkylazine, cross spectrum residual herbicide which has a cellulose biosynthesis inhibition mode of action, there was no published data on the isomeric degradation behavior in soil and water. The results of measuring the isomeric stability of [14C]-radiolabeled 437-IAF, the major stereoisomer of indaziflam (AE 1170437, [1R,2S,6R] configuration) during its degradation in an aerobic soil metabolism study with four EU soils, an aerobic aquatic metabolism study with two natural water/sediment test systems, as well as an aqueous photolysis study are reported. To sum up, it was shown that in the different environmental conditions under abiotic as well as biotic degradation processes, indaziflam was not subject to isomeric interconversion to diastereoisomers 435-IAF (RRR), 438-IAF (RSS), or 439-IAF (SSR). Thus, all three chiral centers of indaziflam can be considered isomerically stable. In addition, no isomeric interconversion was observed at the 1-fluoroethyl position for the major degradation products IAF-indanone and IAF-carboxylic acid to the RSS-configuration as well as IAF-diaminotriazine from the R- to the S-configuration.
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Affiliation(s)
- Dennis Eckelmann
- Bayer AG, Crop Science Division, R&D, Environmental Exposure, 40789 Monheim, Germany.
| | - Thomas Augustin
- Bayer AG, Crop Science Division, R&D, Environmental Exposure, 40789 Monheim, Germany
| | - Christopher Leake
- Bayer AG, Crop Science Division, R&D, Environmental Exposure, 40789 Monheim, Germany
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20
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Wang L, Wang M, Fu Y, Huang P, Kong D, Niu G. Engineered biosynthesis of thaxtomin phytotoxins. Crit Rev Biotechnol 2020; 40:1163-1171. [PMID: 32819175 DOI: 10.1080/07388551.2020.1807461] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Abstract
Herbicide-resistant weeds are a growing problem worldwide. Thaxtomin phytotoxins are a group of nitrated diketopiperazines produced by the potato common scab-causing pathogen Streptomyces scabies and other actinobacterial plant pathogens. They represent a unique class of microbial natural products with distinctive structural features and promising herbicidal activity. The biosynthesis of thaxtomins proceeds through multiple steps of unusual enzymatic reactions. Advances in understanding of thaxtomins biosynthetic machinery have provided the basis for precursor-directed biosynthesis, pathway refactoring, and one-pot biocombinatorial synthesis to generate thaxtomin analogues. We herein summarize recent findings on the biosynthesis of thaxtomins and highlight recent advances in the rational generation of novel thaxtomins for the development of potent herbicidal agents.
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Affiliation(s)
- Linqi Wang
- Biotechnology Research Center, Southwest University, Chongqing, China.,State Cultivation Base of Crop Stress Biology for Southern Mountainous Land, Academy of Agricultural Sciences, Southwest University, Chongqing, China
| | - Meiyan Wang
- Biotechnology Research Center, Southwest University, Chongqing, China.,State Cultivation Base of Crop Stress Biology for Southern Mountainous Land, Academy of Agricultural Sciences, Southwest University, Chongqing, China
| | - Yudie Fu
- Biotechnology Research Center, Southwest University, Chongqing, China.,State Cultivation Base of Crop Stress Biology for Southern Mountainous Land, Academy of Agricultural Sciences, Southwest University, Chongqing, China
| | - Pengju Huang
- Biotechnology Research Center, Southwest University, Chongqing, China.,State Cultivation Base of Crop Stress Biology for Southern Mountainous Land, Academy of Agricultural Sciences, Southwest University, Chongqing, China
| | - Dekun Kong
- Biotechnology Research Center, Southwest University, Chongqing, China.,State Cultivation Base of Crop Stress Biology for Southern Mountainous Land, Academy of Agricultural Sciences, Southwest University, Chongqing, China
| | - Guoqing Niu
- Biotechnology Research Center, Southwest University, Chongqing, China.,State Cultivation Base of Crop Stress Biology for Southern Mountainous Land, Academy of Agricultural Sciences, Southwest University, Chongqing, China.,Chongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, Southwest University, Chongqing, China
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21
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Huang L, Li X, Zhang W, Ung N, Liu N, Yin X, Li Y, Mcewan RE, Dilkes B, Dai M, Hicks GR, Raikhel NV, Staiger CJ, Zhang C. Endosidin20 Targets the Cellulose Synthase Catalytic Domain to Inhibit Cellulose Biosynthesis. THE PLANT CELL 2020; 32:2141-2157. [PMID: 32327535 PMCID: PMC7346566 DOI: 10.1105/tpc.20.00202] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2020] [Revised: 04/13/2020] [Accepted: 04/20/2020] [Indexed: 05/02/2023]
Abstract
Plant cellulose is synthesized by rosette-structured cellulose synthase (CESA) complexes (CSCs). Each CSC is composed of multiple subunits of CESAs representing three different isoforms. Individual CESA proteins contain conserved catalytic domains for catalyzing cellulose synthesis, other domains such as plant-conserved sequences, and class-specific regions that are thought to facilitate complex assembly and CSC trafficking. Because of the current lack of atomic-resolution structures for plant CSCs or CESAs, the molecular mechanism through which CESA catalyzes cellulose synthesis and whether its catalytic activity influences efficient CSC transport at the subcellular level remain unknown. Here, by performing chemical genetic analyses, biochemical assays, structural modeling, and molecular docking, we demonstrate that Endosidin20 (ES20) targets the catalytic site of CESA6 in Arabidopsis (Arabidopsis thaliana). Chemical genetic analysis revealed important amino acids that potentially participate in the catalytic activity of plant CESA6, in addition to previously identified conserved motifs across kingdoms. Using high spatiotemporal resolution live cell imaging, we found that inhibiting the catalytic activity of CESA6 by ES20 treatment reduced the efficiency of CSC transport to the plasma membrane. Our results demonstrate that ES20 is a chemical inhibitor of CESA activity and trafficking that represents a powerful tool for studying cellulose synthesis in plants.
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Affiliation(s)
- Lei Huang
- Department of Botany and Plant Pathology, Purdue University, West Lafayette, Indiana 47907
- Center for Plant Biology, Purdue University, West Lafayette, Indiana 47907
| | - Xiaohui Li
- Department of Botany and Plant Pathology, Purdue University, West Lafayette, Indiana 47907
- Center for Plant Biology, Purdue University, West Lafayette, Indiana 47907
| | - Weiwei Zhang
- Center for Plant Biology, Purdue University, West Lafayette, Indiana 47907
- Department of Biological Sciences, Purdue University, West Lafayette, Indiana 47907
| | - Nolan Ung
- Department of Botany and Plant Sciences, University of California, Riverside, California 92521
| | - Nana Liu
- Department of Botany and Plant Pathology, Purdue University, West Lafayette, Indiana 47907
- Center for Plant Biology, Purdue University, West Lafayette, Indiana 47907
| | - Xianglin Yin
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907
- Center for Cancer Research, Purdue University, West Lafayette, Indiana 47906
| | - Yong Li
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907
- Center for Cancer Research, Purdue University, West Lafayette, Indiana 47906
| | - Robert E Mcewan
- Center for Plant Biology, Purdue University, West Lafayette, Indiana 47907
- Department of Biochemistry, Purdue University, West Lafayette, Indiana 47907
| | - Brian Dilkes
- Center for Plant Biology, Purdue University, West Lafayette, Indiana 47907
- Department of Biochemistry, Purdue University, West Lafayette, Indiana 47907
| | - Mingji Dai
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907
- Center for Cancer Research, Purdue University, West Lafayette, Indiana 47906
| | - Glenn R Hicks
- Department of Botany and Plant Sciences, University of California, Riverside, California 92521
- Uppsala Bio Center, Swedish University of Agricultural Sciences, Uppsala SE-75007, 19 Sweden
| | - Natasha V Raikhel
- Department of Botany and Plant Sciences, University of California, Riverside, California 92521
| | - Christopher J Staiger
- Department of Botany and Plant Pathology, Purdue University, West Lafayette, Indiana 47907
- Center for Plant Biology, Purdue University, West Lafayette, Indiana 47907
- Department of Biological Sciences, Purdue University, West Lafayette, Indiana 47907
| | - Chunhua Zhang
- Department of Botany and Plant Pathology, Purdue University, West Lafayette, Indiana 47907
- Center for Plant Biology, Purdue University, West Lafayette, Indiana 47907
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22
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Zhao L, Cui J, Cai Y, Yang S, Liu J, Wang W, Gai J, Hu Z, Li Y. Comparative Transcriptome Analysis of Two Contrasting Soybean Varieties in Response to Aluminum Toxicity. Int J Mol Sci 2020; 21:E4316. [PMID: 32560405 PMCID: PMC7352676 DOI: 10.3390/ijms21124316] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2020] [Revised: 06/09/2020] [Accepted: 06/12/2020] [Indexed: 01/02/2023] Open
Abstract
: Aluminum (Al) toxicity is a major factor limiting crop productivity on acid soils. Soybean (Glycine max) is an important oil crop and there is great variation in Al tolerance in soybean germplasms. However, only a few Al-tolerance genes have been reported in soybean. Therefore, the purpose of this study was to identify candidate Al tolerance genes by comparative transcriptome analysis of two contrasting soybean varieties in response to Al stress. Two soybean varieties, M90-24 (M) and Pella (P), which showed significant difference in Al tolerance, were used for RNA-seq analysis. We identified a total of 354 Al-tolerance related genes, which showed up-regulated expression by Al in the Al-tolerant soybean variety M and higher transcript levels in M than P under Al stress. These genes were enriched in the Gene Ontology (GO) terms of cellular glucan metabolic process and regulation of transcription. Five out of 11 genes in the enriched GO term of cellular glucan metabolic process encode cellulose synthases, and one cellulose synthase gene (Glyma.02G205800) was identified as the key hub gene by co-expression network analysis. Furthermore, treatment of soybean roots with a cellulose biosynthesis inhibitor decreased the Al tolerance, indicating an important role of cellulose production in soybean tolerance to Al toxicity. This study provides a list of candidate genes for further investigation on Al tolerance mechanisms in soybean.
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Affiliation(s)
- Lijuan Zhao
- National Key Laboratory of Crop Genetics and Germplasm Enhancement, National Center for Soybean Improvement, Key Laboratory for Biology and Genetic Improvement of Soybean (General, Ministry of Agriculture), Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing 210095, China; (L.Z.); (J.C.); (Y.C.); (S.Y.); (J.L.); (W.W.); (J.G.)
| | - Jingjing Cui
- National Key Laboratory of Crop Genetics and Germplasm Enhancement, National Center for Soybean Improvement, Key Laboratory for Biology and Genetic Improvement of Soybean (General, Ministry of Agriculture), Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing 210095, China; (L.Z.); (J.C.); (Y.C.); (S.Y.); (J.L.); (W.W.); (J.G.)
| | - Yuanyuan Cai
- National Key Laboratory of Crop Genetics and Germplasm Enhancement, National Center for Soybean Improvement, Key Laboratory for Biology and Genetic Improvement of Soybean (General, Ministry of Agriculture), Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing 210095, China; (L.Z.); (J.C.); (Y.C.); (S.Y.); (J.L.); (W.W.); (J.G.)
| | - Songnan Yang
- National Key Laboratory of Crop Genetics and Germplasm Enhancement, National Center for Soybean Improvement, Key Laboratory for Biology and Genetic Improvement of Soybean (General, Ministry of Agriculture), Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing 210095, China; (L.Z.); (J.C.); (Y.C.); (S.Y.); (J.L.); (W.W.); (J.G.)
| | - Juge Liu
- National Key Laboratory of Crop Genetics and Germplasm Enhancement, National Center for Soybean Improvement, Key Laboratory for Biology and Genetic Improvement of Soybean (General, Ministry of Agriculture), Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing 210095, China; (L.Z.); (J.C.); (Y.C.); (S.Y.); (J.L.); (W.W.); (J.G.)
| | - Wei Wang
- National Key Laboratory of Crop Genetics and Germplasm Enhancement, National Center for Soybean Improvement, Key Laboratory for Biology and Genetic Improvement of Soybean (General, Ministry of Agriculture), Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing 210095, China; (L.Z.); (J.C.); (Y.C.); (S.Y.); (J.L.); (W.W.); (J.G.)
| | - Junyi Gai
- National Key Laboratory of Crop Genetics and Germplasm Enhancement, National Center for Soybean Improvement, Key Laboratory for Biology and Genetic Improvement of Soybean (General, Ministry of Agriculture), Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing 210095, China; (L.Z.); (J.C.); (Y.C.); (S.Y.); (J.L.); (W.W.); (J.G.)
| | - Zhubing Hu
- College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China;
| | - Yan Li
- National Key Laboratory of Crop Genetics and Germplasm Enhancement, National Center for Soybean Improvement, Key Laboratory for Biology and Genetic Improvement of Soybean (General, Ministry of Agriculture), Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing 210095, China; (L.Z.); (J.C.); (Y.C.); (S.Y.); (J.L.); (W.W.); (J.G.)
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23
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Brosnan JT, Vargas JJ, Spesard B, Netzband D, Zobel JM, Chen J, Patterson EL. Annual bluegrass (Poa annua) resistance to indaziflam applied early-postemergence. PEST MANAGEMENT SCIENCE 2020; 76:2049-2057. [PMID: 31943704 DOI: 10.1002/ps.5740] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2019] [Revised: 01/02/2020] [Accepted: 01/11/2020] [Indexed: 06/10/2023]
Abstract
BACKGROUND Indaziflam is an alkylazine herbicide used to control annual bluegrass (Poa annua L.). Several locations in the southeastern USA reported poor annual bluegrass control following treatment with indaziflam during autumn 2015. A series of controlled environment experiments were conducted to confirm putative resistance to indaziflam in annual bluegrass collected from these field locations. RESULTS Indaziflam (25 g ha-1 ) effectively controlled all putative-resistant annual bluegrass collections when applied preemergence (PRE), but was ineffective when applied early-postemergence (< 2.5 cm plant height; BBCH scale = 1; EPOST). In agarose-based plate assays, EPOST I50 values for putative-resistant collections ranged from 2424 to 4305 pm compared with 633 pm for the herbicide-susceptible control; therefore, resistance indexes (R/S) ranged from 3.8 to 6.8. Resistant collections were not controlled by foramsulfuron, flumioxazin, glyphosate, glufosinate, metribuzin, pronamide, or simazine applied EPOST. Indaziflam content in herbicide-susceptible annual bluegrass was greater than a resistant collection from 0 to 10 days after treatment (DAT). Susceptibility was not restored when resistant collections were treated with indaziflam plus 1-aminobenzotriazole (10 mg L-1 ), tebuconazole (1510 g ha-1 ), or malathion (400 g ha-1 ). CONCLUSIONS This is a first report of resistance to indaziflam in any plant. Additionally, we confirm that these annual bluegrass collections are resistant to several other herbicidal modes-of-action. It is unclear if this multi-herbicide resistance is due to a single resistance gene, multiple resistance genes, non-target site mechanisms, or a combination thereof. Additional research to better understand resistance mechanisms in these annual bluegrass collections is warranted. © 2020 Society of Chemical Industry.
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Affiliation(s)
- James T Brosnan
- Department of Plant Sciences, University of Tennessee, Knoxville, TN, USA
| | - José J Vargas
- Department of Plant Sciences, University of Tennessee, Knoxville, TN, USA
| | | | | | - John M Zobel
- Department of Forest Resources, University of Minnesota, St. Paul, MN, USA
| | - Jinyi Chen
- Department of Plant, Soil, and Microbial Sciences, Michigan State University, East Lansing, MI, USA
| | - Eric L Patterson
- Department of Plant, Soil, and Microbial Sciences, Michigan State University, East Lansing, MI, USA
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24
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Gigli-Bisceglia N, Engelsdorf T, Hamann T. Plant cell wall integrity maintenance in model plants and crop species-relevant cell wall components and underlying guiding principles. Cell Mol Life Sci 2020; 77:2049-2077. [PMID: 31781810 PMCID: PMC7256069 DOI: 10.1007/s00018-019-03388-8] [Citation(s) in RCA: 76] [Impact Index Per Article: 19.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2019] [Revised: 10/28/2019] [Accepted: 11/19/2019] [Indexed: 02/06/2023]
Abstract
The walls surrounding the cells of all land-based plants provide mechanical support essential for growth and development as well as protection from adverse environmental conditions like biotic and abiotic stress. Composition and structure of plant cell walls can differ markedly between cell types, developmental stages and species. This implies that wall composition and structure are actively modified during biological processes and in response to specific functional requirements. Despite extensive research in the area, our understanding of the regulatory processes controlling active and adaptive modifications of cell wall composition and structure is still limited. One of these regulatory processes is the cell wall integrity maintenance mechanism, which monitors and maintains the functional integrity of the plant cell wall during development and interaction with environment. It is an important element in plant pathogen interaction and cell wall plasticity, which seems at least partially responsible for the limited success that targeted manipulation of cell wall metabolism has achieved so far. Here, we provide an overview of the cell wall polysaccharides forming the bulk of plant cell walls in both monocotyledonous and dicotyledonous plants and the effects their impairment can have. We summarize our current knowledge regarding the cell wall integrity maintenance mechanism and discuss that it could be responsible for several of the mutant phenotypes observed.
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Affiliation(s)
- Nora Gigli-Bisceglia
- Laboratory of Plant Physiology, Wageningen University and Research, Wageningen, 6708 PB, The Netherlands
| | - Timo Engelsdorf
- Division of Plant Physiology, Department of Biology, Philipps University of Marburg, 35043, Marburg, Germany
| | - Thorsten Hamann
- Institute for Biology, Faculty of Natural Sciences, Norwegian University of Science and Technology, 5 Høgskoleringen, 7491, Trondheim, Norway.
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25
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Hu Z, Zhang T, Rombaut D, Decaestecker W, Xing A, D'Haeyer S, Höfer R, Vercauteren I, Karimi M, Jacobs T, De Veylder L. Genome Editing-Based Engineering of CESA3 Dual Cellulose-Inhibitor-Resistant Plants. PLANT PHYSIOLOGY 2019; 180:827-836. [PMID: 30910906 PMCID: PMC6548239 DOI: 10.1104/pp.18.01486] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2018] [Accepted: 03/14/2019] [Indexed: 05/18/2023]
Abstract
The rapid appearance of herbicide-resistant weeds combined with a lack of novel herbicides being brought to market reduces crop production, thereby threatening food security worldwide. Here, we report on the use of the previously identified cellulose biosynthesis-inhibiting chemical compound C17 as a potential herbicide. Toxicity tests showed that C17 efficiently inhibits the growth of various weeds and widely cultivated dicotyledonous crops, whereas only slight or no growth inhibition was observed for monocotyledonous crops. Surprisingly, when exposed to a mixture of C17 and one of two well-known cellulose biosynthesis inhibitors (CBIs), isoxaben and indaziflam, an additive growth inhibition was observed, demonstrating that C17 has a different mode of action that can be used to sensitize plants toward known CBIs. Moreover, we demonstrate that a C17-resistant CESA3 allele can be used as a positive transformation selection marker and that C17 resistance can be obtained through genome engineering of the wild-type CESA3 allele using clustered regularly interspaced short palindromic repeats-mediated base editing. This editing system allowed us to engineer C17 tolerance in an isoxaben-resistant line, resulting in double herbicide-resistant plants.
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Affiliation(s)
- Zhubing Hu
- Key Laboratory of Plant Stress Biology, State Key Laboratory of Cotton Biology, School of Life Sciences, Henan University, 475001 Kaifeng, China
- Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium
- Center for Plant Systems Biology, VIB, 9052 Ghent, Belgium
- College of Life Sciences, Nanjing Agricultural University, 210095 Nanjing, China
| | - Teng Zhang
- Key Laboratory of Plant Stress Biology, State Key Laboratory of Cotton Biology, School of Life Sciences, Henan University, 475001 Kaifeng, China
- College of Life Sciences, Nanjing Agricultural University, 210095 Nanjing, China
| | - Debbie Rombaut
- Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium
- Center for Plant Systems Biology, VIB, 9052 Ghent, Belgium
| | - Ward Decaestecker
- Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium
- Center for Plant Systems Biology, VIB, 9052 Ghent, Belgium
| | - Aiming Xing
- Key Laboratory of Plant Stress Biology, State Key Laboratory of Cotton Biology, School of Life Sciences, Henan University, 475001 Kaifeng, China
- College of Life Sciences, Nanjing Agricultural University, 210095 Nanjing, China
| | | | - Rene Höfer
- Discovery Sciences, VIB, 9052 Ghent, Belgium
| | - Ilse Vercauteren
- Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium
- Center for Plant Systems Biology, VIB, 9052 Ghent, Belgium
| | - Mansour Karimi
- Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium
- Center for Plant Systems Biology, VIB, 9052 Ghent, Belgium
| | - Thomas Jacobs
- Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium
- Center for Plant Systems Biology, VIB, 9052 Ghent, Belgium
| | - Lieven De Veylder
- Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium
- Center for Plant Systems Biology, VIB, 9052 Ghent, Belgium
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Clenet DR, Davies KW, Johnson DD, Kerby JD. Native seeds incorporated into activated carbon pods applied concurrently with indaziflam: a new strategy for restoring annual-invaded communities? Restor Ecol 2019. [DOI: 10.1111/rec.12927] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Affiliation(s)
| | - Kirk W. Davies
- USDA-Agricultural Research Service, Eastern Oregon Agricultural Research Center; Oregon State University; Burns Oregon U.S.A
| | | | - Jay D. Kerby
- Southeast Oregon Sagebrush Steppe; Nature Conservancy
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27
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Pratap Sahi V, Cifrová P, García-González J, Kotannal Baby I, Mouillé G, Gineau E, Müller K, Baluška F, Soukup A, Petrášek J, Schwarzerová K. Arabidopsis thaliana plants lacking the ARP2/3 complex show defects in cell wall assembly and auxin distribution. ANNALS OF BOTANY 2018; 122:777-789. [PMID: 29293873 PMCID: PMC6215044 DOI: 10.1093/aob/mcx178] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2017] [Accepted: 11/10/2017] [Indexed: 05/25/2023]
Abstract
BACKGROUND AND AIM The cytoskeleton plays an important role in the synthesis of plant cell walls. Both microtubules and actin cytoskeleton are known to be involved in the morphogenesis of plant cells through their role in cell wall building. The role of ARP2/3-nucleated actin cytoskeleton in the morphogenesis of cotyledon pavement cells has been described before. Seedlings of Arabidopsis mutants lacking a functional ARP2/3 complex display specific cell wall-associated defects. METHODS In three independent Arabidopsis mutant lines lacking subunits of the ARP2/3 complex, phenotypes associated with the loss of the complex were analysed throughout plant development. Organ size and anatomy, cell wall composition, and auxin distribution were investigated. KEY RESULTS ARP2/3-related phenotype is associated with changes in cell wall composition, and the phenotype is manifested especially in mature tissues. Cell walls of mature plants contain less cellulose and a higher amount of homogalacturonan, and display changes in cell wall lignification. Vascular bundles of mutant inflorescence stems show a changed pattern of AUX1-YFP expression. Plants lacking a functional ARP2/3 complex have decreased basipetal auxin transport. CONCLUSIONS The results suggest that the ARP2/3 complex has a morphogenetic function related to cell wall synthesis and auxin transport.
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Affiliation(s)
- Vaidurya Pratap Sahi
- Department of Experimental Plant Biology, Faculty of Science, Charles University, Viničná, Czech Republic
| | - Petra Cifrová
- Department of Experimental Plant Biology, Faculty of Science, Charles University, Viničná, Czech Republic
| | - Judith García-González
- Department of Experimental Plant Biology, Faculty of Science, Charles University, Viničná, Czech Republic
| | | | - Gregory Mouillé
- Institut Jean-Pierre Bourgin, INRA, AgroParisTech, CNRS, Université Paris-Saclay, Versailles, France
| | - Emilie Gineau
- Institut Jean-Pierre Bourgin, INRA, AgroParisTech, CNRS, Université Paris-Saclay, Versailles, France
| | - Karel Müller
- Institute of Experimental Botany, AS CR, Rozvojová, Czech Republic
| | - František Baluška
- Department of Plant Cell Biology, Institute of Cellular and Molecular Botany, University of Bonn, Kirschallee, Bonn, Germany
| | - Aleš Soukup
- Department of Experimental Plant Biology, Faculty of Science, Charles University, Viničná, Czech Republic
| | - Jan Petrášek
- Department of Experimental Plant Biology, Faculty of Science, Charles University, Viničná, Czech Republic
- Institute of Experimental Botany, AS CR, Rozvojová, Czech Republic
| | - Kateřina Schwarzerová
- Department of Experimental Plant Biology, Faculty of Science, Charles University, Viničná, Czech Republic
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28
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Hu M, Qiu J, Zhang H, Fan X, Liu K, Zeng D, Tan H. Method Development and Validation of Indaziflam and Its Five Metabolites in Soil, Water, and Fruits by Modified QuEChERS and UHPLC-MS/MS. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2018; 66:10300-10308. [PMID: 30212200 DOI: 10.1021/acs.jafc.8b04186] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
A method for simultaneously determining indaziflam and its five metabolites in soil, water, and fruits using ultraperformance liquid chromatography/tandem mass spectrometry was established. The analytes were eluted in <4.5 min. Positive electrospray ionization mode was used. The analytes were extracted using acetonitrile containing 1% ammonium hydroxide, and then the extracts were purified using octadecylsilane and PRiME HLB cartridges. The quantification limits were 0.01-1.01 μg kg-1. The linearities of the calibrations for all analytes were excellent ( R2 > 0.9952). The recoveries at spike concentrations of 0.01, 0.1, and 1 mg kg-1 were 81.3-112.1%. The intraday and interday relative standard deviations were <13.5% and <12.3%, respectively. The method was successfully used to determine indaziflam and its five metabolites in samples from markets and fields. The results confirmed that the method is an effective and robust procedure for routinely determining indaziflam and its metabolites in soil, water, and fruit samples.
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Affiliation(s)
- Mingfeng Hu
- Guangxi Key Laboratory for Agro-Environment and Agro-Product Safety, National Demonstration Center for Experimental Plant Science Education, College of Agriculture , Guangxi University , Nanning , Guangxi 530004 , People's Republic of China
| | - Jingsi Qiu
- Guangxi Key Laboratory for Agro-Environment and Agro-Product Safety, National Demonstration Center for Experimental Plant Science Education, College of Agriculture , Guangxi University , Nanning , Guangxi 530004 , People's Republic of China
| | - Hui Zhang
- Guangxi Key Laboratory for Agro-Environment and Agro-Product Safety, National Demonstration Center for Experimental Plant Science Education, College of Agriculture , Guangxi University , Nanning , Guangxi 530004 , People's Republic of China
| | - Xiaosu Fan
- Guangxi Key Laboratory for Agro-Environment and Agro-Product Safety, National Demonstration Center for Experimental Plant Science Education, College of Agriculture , Guangxi University , Nanning , Guangxi 530004 , People's Republic of China
| | - Kunfeng Liu
- Guangxi Key Laboratory for Agro-Environment and Agro-Product Safety, National Demonstration Center for Experimental Plant Science Education, College of Agriculture , Guangxi University , Nanning , Guangxi 530004 , People's Republic of China
| | - Dongqiang Zeng
- Guangxi Key Laboratory for Agro-Environment and Agro-Product Safety, National Demonstration Center for Experimental Plant Science Education, College of Agriculture , Guangxi University , Nanning , Guangxi 530004 , People's Republic of China
| | - Huihua Tan
- Guangxi Key Laboratory for Agro-Environment and Agro-Product Safety, National Demonstration Center for Experimental Plant Science Education, College of Agriculture , Guangxi University , Nanning , Guangxi 530004 , People's Republic of China
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29
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Sebastian DJ, Fleming MB, Patterson EL, Sebastian JR, Nissen SJ. Indaziflam: a new cellulose-biosynthesis-inhibiting herbicide provides long-term control of invasive winter annual grasses. PEST MANAGEMENT SCIENCE 2017; 73:2149-2162. [PMID: 28436172 DOI: 10.1002/ps.4594] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/03/2017] [Revised: 04/10/2017] [Accepted: 04/18/2017] [Indexed: 06/07/2023]
Abstract
BACKGROUND Indaziflam is a cellulose-biosynthesis-inhibiting (CBI) herbicide that is a unique mode of action for resistance management and has broad spectrum activity at low application rates. This research further explores indaziflam's activity on monocotyledons and dicotyledons and evaluates indaziflam's potential for restoring non-crop sites infested with invasive winter annual grasses. RESULTS Treated Arabidopsis, downy brome, feral rye and kochia were all susceptible to indaziflam in a dose-dependent manner. We confirmed that indaziflam has increased activity on monocots (average GR50 = 231 pm and 0.38 g AI ha-1 ) at reduced concentrations compared with dicots (average GR50 = 512 pm and 0.87 g AI ha-1 ). Fluorescence microscopy confirmed common CBI symptomologies following indaziflam treatments, as well as aberrant root and cell morphology. Across five application timings, indaziflam treatments resulted in superior invasive winter annual grass control 2 years after treatment (from 84 ± 5.1% to 99 ± 0.5%) compared with imazapic (36% ± 1.2%). Indaziflam treatments significantly increased biomass and species richness of co-occurring species 2 years after treatment. CONCLUSION Indaziflam's increased activity on monocots could provide a new alternative management strategy for long-term control of multiple invasive winter annual grasses that invade >23 million ha of US rangeland. Indaziflam could potentially be used to eliminate the soil seed bank of these invasive grasses, reduce fine fuel accumulation and ultimately increase the competitiveness of perennial co-occuring species. © 2017 Society of Chemical Industry.
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Affiliation(s)
- Derek J Sebastian
- Bioagricultural Science and Pest Management Department, Colorado State University, Fort Collins, CO, USA
| | - Margaret B Fleming
- Bioagricultural Science and Pest Management Department, Colorado State University, Fort Collins, CO, USA
- USDA Agricultural Research Services, National Laboratory for Genetic Resources Preservation, Fort Collins, CO, USA
| | - Eric L Patterson
- Bioagricultural Science and Pest Management Department, Colorado State University, Fort Collins, CO, USA
| | - James R Sebastian
- Weed Specialist, Boulder County Parks and Open Space, Longmont, CO, USA
| | - Scott J Nissen
- Bioagricultural Science and Pest Management Department, Colorado State University, Fort Collins, CO, USA
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30
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Faulkner C, Zhou J, Evrard A, Bourdais G, MacLean D, Häweker H, Eckes P, Robatzek S. An automated quantitative image analysis tool for the identification of microtubule patterns in plants. Traffic 2017; 18:683-693. [PMID: 28746801 DOI: 10.1111/tra.12505] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2016] [Revised: 07/23/2017] [Accepted: 07/23/2017] [Indexed: 12/20/2022]
Abstract
High throughput confocal imaging poses challenges in the computational image analysis of complex subcellular structures such as the microtubule cytoskeleton. Here, we developed CellArchitect, an automated image analysis tool that quantifies changes to subcellular patterns illustrated by microtubule markers in plants. We screened microtubule-targeted herbicides and demonstrate that high throughput confocal imaging with integrated image analysis by CellArchitect can distinguish effects induced by the known herbicides indaziflam and trifluralin. The same platform was used to examine 6 other compounds with herbicidal activity, and at least 3 different effects induced by these compounds were profiled. We further show that CellArchitect can detect subcellular patterns tagged by actin and endoplasmic reticulum markers. Thus, the platform developed here can be used to automate image analysis of complex subcellular patterns for purposes such as herbicide discovery and mode of action characterisation. The capacity to use this tool to quantitatively characterize cellular responses lends itself to application across many areas of biology.
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Affiliation(s)
| | - Ji Zhou
- Norwich Research Park, The Sainsbury Laboratory, Norwich, UK
| | | | - Gildas Bourdais
- Norwich Research Park, The Sainsbury Laboratory, Norwich, UK
| | - Dan MacLean
- Norwich Research Park, The Sainsbury Laboratory, Norwich, UK
| | - Heidrun Häweker
- Norwich Research Park, The Sainsbury Laboratory, Norwich, UK
| | - Peter Eckes
- Bayer AG, Crop Science Division, Industrial Park Hoechst, Frankfurt, Germany
| | - Silke Robatzek
- Norwich Research Park, The Sainsbury Laboratory, Norwich, UK
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31
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Sebastian DJ, Nissen SJ, Westra P, Shaner DL, Butters G. Influence of soil properties and soil moisture on the efficacy of indaziflam and flumioxazin on Kochia scoparia L. PEST MANAGEMENT SCIENCE 2017; 73:444-451. [PMID: 27108479 DOI: 10.1002/ps.4300] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/05/2016] [Revised: 04/20/2016] [Accepted: 04/21/2016] [Indexed: 06/05/2023]
Abstract
BACKGROUND Kochia (Kochia scoparia L.) is a highly competitive, non-native weed found throughout the western United States. Flumioxazin and indaziflam are two broad-spectrum pre-emergence herbicides that can control kochia in a variety of crop and non-crop situations; however, under dry conditions, these herbicides sometimes fail to control this important weed. There is very little information describing the effect of soil properties and soil moisture on the efficacy of these herbicides. RESULTS Soil organic matter (SOM) explained the highest proportion of variability in predicting the herbicide dose required for 80% kochia growth reduction (GR80 ) for flumioxazin and indaziflam (R2 = 0.72 and 0.79 respectively). SOM had a greater impact on flumioxazin phytotoxicity compared to indaziflam. Flumioxazin and indaziflam kochia phytotoxicity was greatly reduced at soil water potentials below -200 kPa. CONCLUSION Kochia can germinate at soil moisture potentials below the moisture required for flumioxazin and indaziflam activation, which means that kochia control is greatly influenced by the complex interaction between soil physical properties and soil moisture. This research can be used to gain a better understanding of how and why some weeds, like kochia, are so difficult to manage even with herbicides that normally provide excellent control. © 2016 Society of Chemical Industry.
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Affiliation(s)
- Derek J Sebastian
- Bioagricultural Science and Pest Management Department, Colorado State University, Fort Collins, CO, USA
| | - Scott J Nissen
- Bioagricultural Science and Pest Management Department, Colorado State University, Fort Collins, CO, USA
| | - Phil Westra
- Bioagricultural Science and Pest Management Department, Colorado State University, Fort Collins, CO, USA
| | | | - Greg Butters
- Soil and Crop Science Department, Colorado State University, Fort Collins, CO, USA
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32
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Hu Z, Vanderhaeghen R, Cools T, Wang Y, De Clercq I, Leroux O, Nguyen L, Belt K, Millar AH, Audenaert D, Hilson P, Small I, Mouille G, Vernhettes S, Van Breusegem F, Whelan J, Höfte H, De Veylder L. Mitochondrial Defects Confer Tolerance against Cellulose Deficiency. THE PLANT CELL 2016; 28:2276-2290. [PMID: 27543091 PMCID: PMC5059812 DOI: 10.1105/tpc.16.00540] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2016] [Revised: 08/08/2016] [Accepted: 08/19/2016] [Indexed: 05/03/2023]
Abstract
Because the plant cell wall provides the first line of defense against biotic and abiotic assaults, its functional integrity needs to be maintained under stress conditions. Through a phenotype-based compound screening approach, we identified a novel cellulose synthase inhibitor, designated C17. C17 administration depletes cellulose synthase complexes from the plasma membrane in Arabidopsis thaliana, resulting in anisotropic cell elongation and a weak cell wall. Surprisingly, in addition to mutations in CELLULOSE SYNTHASE1 (CESA1) and CESA3, a forward genetic screen identified two independent defective genes encoding pentatricopeptide repeat (PPR)-like proteins (CELL WALL MAINTAINER1 [CWM1] and CWM2) as conferring tolerance to C17. Functional analysis revealed that mutations in these PPR proteins resulted in defective cytochrome c maturation and activation of mitochondrial retrograde signaling, as evidenced by the induction of an alternative oxidase. These mitochondrial perturbations increased tolerance to cell wall damage induced by cellulose deficiency. Likewise, administration of antimycin A, an inhibitor of mitochondrial complex III, resulted in tolerance toward C17. The C17 tolerance of cwm2 was partially lost upon depletion of the mitochondrial retrograde regulator ANAC017, demonstrating that ANAC017 links mitochondrial dysfunction with the cell wall. In view of mitochondria being a major target of a variety of stresses, our data indicate that plant cells might modulate mitochondrial activity to maintain a functional cell wall when subjected to stresses.
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Affiliation(s)
- Zhubing Hu
- Department of Plant Systems Biology, VIB, B-9052 Gent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Gent, Belgium
- College of Life Sciences, Nanjing Agricultural University, 210095 Nanjing, People's Republic of China
| | - Rudy Vanderhaeghen
- Department of Plant Systems Biology, VIB, B-9052 Gent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Gent, Belgium
| | - Toon Cools
- Department of Plant Systems Biology, VIB, B-9052 Gent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Gent, Belgium
| | - Yan Wang
- Department of Botany, ARC Centre of Excellence in Plant Energy Biology, School of Life Science, La Trobe University, Bundoora 3086, Victoria, Australia
| | - Inge De Clercq
- Department of Plant Systems Biology, VIB, B-9052 Gent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Gent, Belgium
| | - Olivier Leroux
- Department of Biology, Ghent University, B-9000 Gent, Belgium
| | - Long Nguyen
- Compound Screening Facility, VIB, B-9052 Gent, Belgium
| | - Katharina Belt
- Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley 6009, Australia
| | - A Harvey Millar
- Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley 6009, Australia
| | | | - Pierre Hilson
- Department of Plant Systems Biology, VIB, B-9052 Gent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Gent, Belgium
- Institut Jean-Pierre Bourgin, INRA, Centre National pour la Recherche Scientifique, AgroParisTech, Université Paris-Saclay, 78026 Versailles Cedex, France
| | - Ian Small
- Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley 6009, Australia
| | - Grégory Mouille
- Institut Jean-Pierre Bourgin, INRA, Centre National pour la Recherche Scientifique, AgroParisTech, Université Paris-Saclay, 78026 Versailles Cedex, France
| | - Samantha Vernhettes
- Institut Jean-Pierre Bourgin, INRA, Centre National pour la Recherche Scientifique, AgroParisTech, Université Paris-Saclay, 78026 Versailles Cedex, France
| | - Frank Van Breusegem
- Department of Plant Systems Biology, VIB, B-9052 Gent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Gent, Belgium
| | - James Whelan
- Department of Botany, ARC Centre of Excellence in Plant Energy Biology, School of Life Science, La Trobe University, Bundoora 3086, Victoria, Australia
| | - Herman Höfte
- Institut Jean-Pierre Bourgin, INRA, Centre National pour la Recherche Scientifique, AgroParisTech, Université Paris-Saclay, 78026 Versailles Cedex, France
| | - Lieven De Veylder
- Department of Plant Systems Biology, VIB, B-9052 Gent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Gent, Belgium
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Sorek N, Turner S. From the nucleus to the apoplast: building the plant’s cell wall. JOURNAL OF EXPERIMENTAL BOTANY 2016; 67:445-7. [PMID: 27119140 PMCID: PMC4699472 DOI: 10.1093/jxb/erv522] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
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Wang T, Hong M. Solid-state NMR investigations of cellulose structure and interactions with matrix polysaccharides in plant primary cell walls. JOURNAL OF EXPERIMENTAL BOTANY 2016; 67:503-14. [PMID: 26355148 PMCID: PMC6280985 DOI: 10.1093/jxb/erv416] [Citation(s) in RCA: 116] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/17/2023]
Abstract
Until recently, the 3D architecture of plant cell walls was poorly understood due to the lack of high-resolution techniques for characterizing the molecular structure, dynamics, and intermolecular interactions of the wall polysaccharides in these insoluble biomolecular mixtures. We introduced multidimensional solid-state NMR (SSNMR) spectroscopy, coupled with (13)C labelling of whole plants, to determine the spatial arrangements of macromolecules in near-native plant cell walls. Here we review key evidence from 2D and 3D correlation NMR spectra that show relatively few cellulose-hemicellulose cross peaks but many cellulose-pectin cross peaks, indicating that cellulose microfibrils are not extensively coated by hemicellulose and all three major polysaccharides exist in a single network rather than two separate networks as previously proposed. The number of glucan chains in the primary-wall cellulose microfibrils has been under active debate recently. We show detailed analysis of quantitative (13)C SSNMR spectra of cellulose in various wild-type (WT) and mutant Arabidopsis and Brachypodium primary cell walls, which consistently indicate that primary-wall cellulose microfibrils contain at least 24 glucan chains.
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Affiliation(s)
- Tuo Wang
- Department of Chemistry, Massachusetts Institute of Technology, 170 Albany Street, Cambridge, MA 02139, USA
| | - Mei Hong
- Department of Chemistry, Massachusetts Institute of Technology, 170 Albany Street, Cambridge, MA 02139, USA
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Tateno M, Brabham C, DeBolt S. Cellulose biosynthesis inhibitors - a multifunctional toolbox. JOURNAL OF EXPERIMENTAL BOTANY 2016; 67:533-42. [PMID: 26590309 DOI: 10.1093/jxb/erv489] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
In the current review, we examine the growing number of existing Cellulose Biosynthesis Inhibitors (CBIs) and based on those that have been studied with live cell imaging we group their mechanism of action. Attention is paid to the use of CBIs as tools to ask fundamental questions about cellulose biosynthesis.
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Affiliation(s)
| | | | - Seth DeBolt
- Department of Horticulture, University of Kentucky, 309 Plant Science Building, 1405 Veterans Drive, Lexington, KY 40546-0312, USA
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Identification of MEDIATOR16 as the Arabidopsis COBRA suppressor MONGOOSE1. Proc Natl Acad Sci U S A 2015; 112:16048-53. [PMID: 26655738 DOI: 10.1073/pnas.1521675112] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022] Open
Abstract
We performed a screen for genetic suppressors of cobra, an Arabidopsis mutant with defects in cellulose formation and an increased ratio of unesterified/esterified pectin. We identified a suppressor named mongoose1 (mon1) that suppressed the growth defects of cobra, partially restored cellulose levels, and restored the esterification ratio of pectin to wild-type levels. mon1 was mapped to the MEDIATOR16 (MED16) locus, a tail mediator subunit, also known as SENSITIVE TO FREEZING6 (SFR6). When separated from the cobra mutation, mutations in MED16 caused resistance to cellulose biosynthesis inhibitors, consistent with their ability to suppress the cobra cellulose deficiency. Transcriptome analysis revealed that a number of cell wall genes are misregulated in med16 mutants. Two of these genes encode pectin methylesterase inhibitors, which, when ectopically expressed, partially suppressed the cobra phenotype. This suggests that cellulose biosynthesis can be affected by the esterification levels of pectin, possibly through modifying cell wall integrity or the interaction of pectin and cellulose.
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Drakakaki G. Polysaccharide deposition during cytokinesis: Challenges and future perspectives. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2015; 236:177-84. [PMID: 26025531 DOI: 10.1016/j.plantsci.2015.03.018] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2014] [Revised: 03/25/2015] [Accepted: 03/26/2015] [Indexed: 05/18/2023]
Abstract
De novo formation of a new cell wall partitions the cytoplasm of the dividing cell during plant cytokinesis. The development of the cell plate, a transient sheet-like structure, requires the accumulation of vesicles directed by the phragmoplast to the cell plate assembly matrix. Fusion and fission of the accumulated vesicles are accompanied by the deposition of polysaccharides and cell wall structural proteins; together, they are leading to the stabilization of the formed structure which after insertion into the parental wall lead to the maturation of the nascent cross wall. Callose is the most abundant polysaccharide during cell plate formation and during maturation is gradually replaced by cellulose. Matrix polysaccharides such as hemicellulose, and pectins presumably are present throughout all developmental stages, being delivered to the cell plate by secretory vesicles. The availability of novel chemical probes such as endosidin 7, which inhibits callose formation at the cell plate, has proved useful for dissecting the temporal accumulation of vesicles at the cell plate and establishing the critical role of callose during cytokinesis. The use of emerging approaches such as chemical genomics combined with live cell imaging; novel techniques of polysaccharide detection including tagged polysaccharide substrates, newly characterized polysaccharide antibodies and vesicle proteomics can be used to develop a comprehensive model of cell plate development.
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Affiliation(s)
- Georgia Drakakaki
- Department of Plant Sciences, University of California, One Shields Avenue, Davis, CA 95616, United States.
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Mélida H, Largo-Gosens A, Novo-Uzal E, Santiago R, Pomar F, García P, García-Angulo P, Acebes JL, Álvarez J, Encina A. Ectopic lignification in primary cellulose-deficient cell walls of maize cell suspension cultures. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2015; 57:357-72. [PMID: 25735403 DOI: 10.1111/jipb.12346] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2014] [Accepted: 02/25/2015] [Indexed: 05/23/2023]
Abstract
Maize (Zea mays L.) suspension-cultured cells with up to 70% less cellulose were obtained by stepwise habituation to dichlobenil (DCB), a cellulose biosynthesis inhibitor. Cellulose deficiency was accompanied by marked changes in cell wall matrix polysaccharides and phenolics as revealed by Fourier transform infrared (FTIR) spectroscopy. Cell wall compositional analysis indicated that the cellulose-deficient cell walls showed an enhancement of highly branched and cross-linked arabinoxylans, as well as an increased content in ferulic acid, diferulates and p-coumaric acid, and the presence of a polymer that stained positive for phloroglucinol. In accordance with this, cellulose-deficient cell walls showed a fivefold increase in Klason-type lignin. Thioacidolysis/GC-MS analysis of cellulose-deficient cell walls indicated the presence of a lignin-like polymer with a Syringyl/Guaiacyl ratio of 1.45, which differed from the sensu stricto stress-related lignin that arose in response to short-term DCB-treatments. Gene expression analysis of these cells indicated an overexpression of genes specific for the biosynthesis of monolignol units of lignin. A study of stress signaling pathways revealed an overexpression of some of the jasmonate signaling pathway genes, which might trigger ectopic lignification in response to cell wall integrity disruptions. In summary, the structural plasticity of primary cell walls is proven, since a lignification process is possible in response to cellulose impoverishment.
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Affiliation(s)
- Hugo Mélida
- Plant Physiology Laboratory, Faculty of Biological and Environmental Sciences, University of León, E-24071 León, Spain; Centre for Plant Biotechnology and Genomics (CBGP), Politechnical University of Madrid, E-28223 Madrid, Spain
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Worden N, Wilkop TE, Esteve VE, Jeannotte R, Lathe R, Vernhettes S, Weimer B, Hicks G, Alonso J, Labavitch J, Persson S, Ehrhardt D, Drakakaki G. CESA TRAFFICKING INHIBITOR inhibits cellulose deposition and interferes with the trafficking of cellulose synthase complexes and their associated proteins KORRIGAN1 and POM2/CELLULOSE SYNTHASE INTERACTIVE PROTEIN1. PLANT PHYSIOLOGY 2015; 167:381-93. [PMID: 25535279 PMCID: PMC4326758 DOI: 10.1104/pp.114.249003] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/02/2023]
Abstract
Cellulose synthase complexes (CSCs) at the plasma membrane (PM) are aligned with cortical microtubules (MTs) and direct the biosynthesis of cellulose. The mechanism of the interaction between CSCs and MTs, and the cellular determinants that control the delivery of CSCs at the PM, are not yet well understood. We identified a unique small molecule, CESA TRAFFICKING INHIBITOR (CESTRIN), which reduces cellulose content and alters the anisotropic growth of Arabidopsis (Arabidopsis thaliana) hypocotyls. We monitored the distribution and mobility of fluorescently labeled cellulose synthases (CESAs) in live Arabidopsis cells under chemical exposure to characterize their subcellular effects. CESTRIN reduces the velocity of PM CSCs and causes their accumulation in the cell cortex. The CSC-associated proteins KORRIGAN1 (KOR1) and POM2/CELLULOSE SYNTHASE INTERACTIVE PROTEIN1 (CSI1) were differentially affected by CESTRIN treatment, indicating different forms of association with the PM CSCs. KOR1 accumulated in bodies similar to CESA; however, POM2/CSI1 dissociated into the cytoplasm. In addition, MT stability was altered without direct inhibition of MT polymerization, suggesting a feedback mechanism caused by cellulose interference. The selectivity of CESTRIN was assessed using a variety of subcellular markers for which no morphological effect was observed. The association of CESAs with vesicles decorated by the trans-Golgi network-localized protein SYNTAXIN OF PLANTS61 (SYP61) was increased under CESTRIN treatment, implicating SYP61 compartments in CESA trafficking. The properties of CESTRIN compared with known CESA inhibitors afford unique avenues to study and understand the mechanism under which PM-associated CSCs are maintained and interact with MTs and to dissect their trafficking routes in etiolated hypocotyls.
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Affiliation(s)
- Natasha Worden
- Departments of Plant Sciences (N.W., T.E.W., V.E.E., J.L., G.D.) and Veterinary Medicine (R.J., B.W.), University of California, Davis, California 95616;Max-Planck-Institute of Molecular Plant Physiology, Science Campus, 14476 Golm, Germany (R.L., S.P.);Institut National de la Recherche Agronomique, Institute Jean-Pierre Bourgin, 78026 Versailles, France (S.V.);Department of Botany and Plant Sciences, University of California, Riverside, California 92521 (G.H.);Department of Plant and Microbial Biology, North Caroline State University, Raleigh, North Carolina 27695 (J.A.);Australian Research Council Centre of Excellence in Plant Cell Walls, School of Botany, University of Melbourne, Parkville, Victoria 3010, Australia (S.P.); andDepartment of Plant Biology, Carnegie Institution for Science, Stanford, California 94305 (D.E.)
| | - Thomas E Wilkop
- Departments of Plant Sciences (N.W., T.E.W., V.E.E., J.L., G.D.) and Veterinary Medicine (R.J., B.W.), University of California, Davis, California 95616;Max-Planck-Institute of Molecular Plant Physiology, Science Campus, 14476 Golm, Germany (R.L., S.P.);Institut National de la Recherche Agronomique, Institute Jean-Pierre Bourgin, 78026 Versailles, France (S.V.);Department of Botany and Plant Sciences, University of California, Riverside, California 92521 (G.H.);Department of Plant and Microbial Biology, North Caroline State University, Raleigh, North Carolina 27695 (J.A.);Australian Research Council Centre of Excellence in Plant Cell Walls, School of Botany, University of Melbourne, Parkville, Victoria 3010, Australia (S.P.); andDepartment of Plant Biology, Carnegie Institution for Science, Stanford, California 94305 (D.E.)
| | - Victor Esteva Esteve
- Departments of Plant Sciences (N.W., T.E.W., V.E.E., J.L., G.D.) and Veterinary Medicine (R.J., B.W.), University of California, Davis, California 95616;Max-Planck-Institute of Molecular Plant Physiology, Science Campus, 14476 Golm, Germany (R.L., S.P.);Institut National de la Recherche Agronomique, Institute Jean-Pierre Bourgin, 78026 Versailles, France (S.V.);Department of Botany and Plant Sciences, University of California, Riverside, California 92521 (G.H.);Department of Plant and Microbial Biology, North Caroline State University, Raleigh, North Carolina 27695 (J.A.);Australian Research Council Centre of Excellence in Plant Cell Walls, School of Botany, University of Melbourne, Parkville, Victoria 3010, Australia (S.P.); andDepartment of Plant Biology, Carnegie Institution for Science, Stanford, California 94305 (D.E.)
| | - Richard Jeannotte
- Departments of Plant Sciences (N.W., T.E.W., V.E.E., J.L., G.D.) and Veterinary Medicine (R.J., B.W.), University of California, Davis, California 95616;Max-Planck-Institute of Molecular Plant Physiology, Science Campus, 14476 Golm, Germany (R.L., S.P.);Institut National de la Recherche Agronomique, Institute Jean-Pierre Bourgin, 78026 Versailles, France (S.V.);Department of Botany and Plant Sciences, University of California, Riverside, California 92521 (G.H.);Department of Plant and Microbial Biology, North Caroline State University, Raleigh, North Carolina 27695 (J.A.);Australian Research Council Centre of Excellence in Plant Cell Walls, School of Botany, University of Melbourne, Parkville, Victoria 3010, Australia (S.P.); andDepartment of Plant Biology, Carnegie Institution for Science, Stanford, California 94305 (D.E.)
| | - Rahul Lathe
- Departments of Plant Sciences (N.W., T.E.W., V.E.E., J.L., G.D.) and Veterinary Medicine (R.J., B.W.), University of California, Davis, California 95616;Max-Planck-Institute of Molecular Plant Physiology, Science Campus, 14476 Golm, Germany (R.L., S.P.);Institut National de la Recherche Agronomique, Institute Jean-Pierre Bourgin, 78026 Versailles, France (S.V.);Department of Botany and Plant Sciences, University of California, Riverside, California 92521 (G.H.);Department of Plant and Microbial Biology, North Caroline State University, Raleigh, North Carolina 27695 (J.A.);Australian Research Council Centre of Excellence in Plant Cell Walls, School of Botany, University of Melbourne, Parkville, Victoria 3010, Australia (S.P.); andDepartment of Plant Biology, Carnegie Institution for Science, Stanford, California 94305 (D.E.)
| | - Samantha Vernhettes
- Departments of Plant Sciences (N.W., T.E.W., V.E.E., J.L., G.D.) and Veterinary Medicine (R.J., B.W.), University of California, Davis, California 95616;Max-Planck-Institute of Molecular Plant Physiology, Science Campus, 14476 Golm, Germany (R.L., S.P.);Institut National de la Recherche Agronomique, Institute Jean-Pierre Bourgin, 78026 Versailles, France (S.V.);Department of Botany and Plant Sciences, University of California, Riverside, California 92521 (G.H.);Department of Plant and Microbial Biology, North Caroline State University, Raleigh, North Carolina 27695 (J.A.);Australian Research Council Centre of Excellence in Plant Cell Walls, School of Botany, University of Melbourne, Parkville, Victoria 3010, Australia (S.P.); andDepartment of Plant Biology, Carnegie Institution for Science, Stanford, California 94305 (D.E.)
| | - Bart Weimer
- Departments of Plant Sciences (N.W., T.E.W., V.E.E., J.L., G.D.) and Veterinary Medicine (R.J., B.W.), University of California, Davis, California 95616;Max-Planck-Institute of Molecular Plant Physiology, Science Campus, 14476 Golm, Germany (R.L., S.P.);Institut National de la Recherche Agronomique, Institute Jean-Pierre Bourgin, 78026 Versailles, France (S.V.);Department of Botany and Plant Sciences, University of California, Riverside, California 92521 (G.H.);Department of Plant and Microbial Biology, North Caroline State University, Raleigh, North Carolina 27695 (J.A.);Australian Research Council Centre of Excellence in Plant Cell Walls, School of Botany, University of Melbourne, Parkville, Victoria 3010, Australia (S.P.); andDepartment of Plant Biology, Carnegie Institution for Science, Stanford, California 94305 (D.E.)
| | - Glenn Hicks
- Departments of Plant Sciences (N.W., T.E.W., V.E.E., J.L., G.D.) and Veterinary Medicine (R.J., B.W.), University of California, Davis, California 95616;Max-Planck-Institute of Molecular Plant Physiology, Science Campus, 14476 Golm, Germany (R.L., S.P.);Institut National de la Recherche Agronomique, Institute Jean-Pierre Bourgin, 78026 Versailles, France (S.V.);Department of Botany and Plant Sciences, University of California, Riverside, California 92521 (G.H.);Department of Plant and Microbial Biology, North Caroline State University, Raleigh, North Carolina 27695 (J.A.);Australian Research Council Centre of Excellence in Plant Cell Walls, School of Botany, University of Melbourne, Parkville, Victoria 3010, Australia (S.P.); andDepartment of Plant Biology, Carnegie Institution for Science, Stanford, California 94305 (D.E.)
| | - Jose Alonso
- Departments of Plant Sciences (N.W., T.E.W., V.E.E., J.L., G.D.) and Veterinary Medicine (R.J., B.W.), University of California, Davis, California 95616;Max-Planck-Institute of Molecular Plant Physiology, Science Campus, 14476 Golm, Germany (R.L., S.P.);Institut National de la Recherche Agronomique, Institute Jean-Pierre Bourgin, 78026 Versailles, France (S.V.);Department of Botany and Plant Sciences, University of California, Riverside, California 92521 (G.H.);Department of Plant and Microbial Biology, North Caroline State University, Raleigh, North Carolina 27695 (J.A.);Australian Research Council Centre of Excellence in Plant Cell Walls, School of Botany, University of Melbourne, Parkville, Victoria 3010, Australia (S.P.); andDepartment of Plant Biology, Carnegie Institution for Science, Stanford, California 94305 (D.E.)
| | - John Labavitch
- Departments of Plant Sciences (N.W., T.E.W., V.E.E., J.L., G.D.) and Veterinary Medicine (R.J., B.W.), University of California, Davis, California 95616;Max-Planck-Institute of Molecular Plant Physiology, Science Campus, 14476 Golm, Germany (R.L., S.P.);Institut National de la Recherche Agronomique, Institute Jean-Pierre Bourgin, 78026 Versailles, France (S.V.);Department of Botany and Plant Sciences, University of California, Riverside, California 92521 (G.H.);Department of Plant and Microbial Biology, North Caroline State University, Raleigh, North Carolina 27695 (J.A.);Australian Research Council Centre of Excellence in Plant Cell Walls, School of Botany, University of Melbourne, Parkville, Victoria 3010, Australia (S.P.); andDepartment of Plant Biology, Carnegie Institution for Science, Stanford, California 94305 (D.E.)
| | - Staffan Persson
- Departments of Plant Sciences (N.W., T.E.W., V.E.E., J.L., G.D.) and Veterinary Medicine (R.J., B.W.), University of California, Davis, California 95616;Max-Planck-Institute of Molecular Plant Physiology, Science Campus, 14476 Golm, Germany (R.L., S.P.);Institut National de la Recherche Agronomique, Institute Jean-Pierre Bourgin, 78026 Versailles, France (S.V.);Department of Botany and Plant Sciences, University of California, Riverside, California 92521 (G.H.);Department of Plant and Microbial Biology, North Caroline State University, Raleigh, North Carolina 27695 (J.A.);Australian Research Council Centre of Excellence in Plant Cell Walls, School of Botany, University of Melbourne, Parkville, Victoria 3010, Australia (S.P.); andDepartment of Plant Biology, Carnegie Institution for Science, Stanford, California 94305 (D.E.)
| | - David Ehrhardt
- Departments of Plant Sciences (N.W., T.E.W., V.E.E., J.L., G.D.) and Veterinary Medicine (R.J., B.W.), University of California, Davis, California 95616;Max-Planck-Institute of Molecular Plant Physiology, Science Campus, 14476 Golm, Germany (R.L., S.P.);Institut National de la Recherche Agronomique, Institute Jean-Pierre Bourgin, 78026 Versailles, France (S.V.);Department of Botany and Plant Sciences, University of California, Riverside, California 92521 (G.H.);Department of Plant and Microbial Biology, North Caroline State University, Raleigh, North Carolina 27695 (J.A.);Australian Research Council Centre of Excellence in Plant Cell Walls, School of Botany, University of Melbourne, Parkville, Victoria 3010, Australia (S.P.); andDepartment of Plant Biology, Carnegie Institution for Science, Stanford, California 94305 (D.E.)
| | - Georgia Drakakaki
- Departments of Plant Sciences (N.W., T.E.W., V.E.E., J.L., G.D.) and Veterinary Medicine (R.J., B.W.), University of California, Davis, California 95616;Max-Planck-Institute of Molecular Plant Physiology, Science Campus, 14476 Golm, Germany (R.L., S.P.);Institut National de la Recherche Agronomique, Institute Jean-Pierre Bourgin, 78026 Versailles, France (S.V.);Department of Botany and Plant Sciences, University of California, Riverside, California 92521 (G.H.);Department of Plant and Microbial Biology, North Caroline State University, Raleigh, North Carolina 27695 (J.A.);Australian Research Council Centre of Excellence in Plant Cell Walls, School of Botany, University of Melbourne, Parkville, Victoria 3010, Australia (S.P.); andDepartment of Plant Biology, Carnegie Institution for Science, Stanford, California 94305 (D.E.)
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Affiliation(s)
- Robert Edwards
- School of Agriculture, Food and Rural Development Newcastle University, Newcastle NE1 7RU United Kingdom
| | - Matthew Hannah
- Bayer CropScience NV, Innovation Center-Trait Discovery 9052 Ghent, Belgium
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