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Ma N, Sun T, Liu G, Wang Q, Liu C, Liu N, Han S, Zhen W, Hou C, Wang D. Translationally controlled tumor protein interacts with TaCIPK23 to positively regulate wheat resistance to Puccinia triticina. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2024. [PMID: 39180235 DOI: 10.1111/tpj.16987] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2023] [Revised: 07/30/2024] [Accepted: 08/05/2024] [Indexed: 08/26/2024]
Abstract
Hypersensitive response-programmed cell death (HR-PCD) regulated by Ca2+ signal is considered the major regulator of resistance against Puccinia triticina (Pt.) infection in wheat. In this study, the bread wheat variety Thatcher and its near-isogenic line with the leaf rust resistance locus Lr26 were infected with the Pt. race 260 to obtain the compatible and incompatible combinations, respectively. The expression of translationally controlled tumor protein (TaTCTP) was upregulated upon infection with Pt., through a Ca2+-dependent mechanism in the incompatible combination. The knockdown of TaTCTP markedly increased the area of dying cell and the number of Pt. haustorial mother cells (HMCs) at the infection sites, whereas plants overexpressing the gene exhibited enhanced resistance. The interaction between TaTCTP and calcineurin B-like protein-interacting protein kinase 23 (TaCIPK23) was also investigated, and the interaction was found occurred in the endoplasmic reticulum. TaCIPK23 phosphorylated TaTCTP in vitro. The expression of a phospho-mimic TaTCTP mutant in Nicotiana benthamiana promoted HR-like cell death. Silencing TaCIPK23 or TaCIPK23/TaTCTP co-silencing resulted in the same results as silencing TaTCTP. This suggested that TaTCTP is a novel phosphorylation target of TaCIPK23, and both participate in the resistance of wheat to Pt. in the same pathway.
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Affiliation(s)
- Nan Ma
- State Key Laboratory of North China Crop Improvement and Regulation, Baoding, China
- Key Laboratory of Hebei Province for Plant Physiology and Molecular Pathology, Baoding, China
- College of Life Sciences, Hebei Agricultural University, Baoding, China
| | - Tianjie Sun
- State Key Laboratory of North China Crop Improvement and Regulation, Baoding, China
- Key Laboratory of Hebei Province for Plant Physiology and Molecular Pathology, Baoding, China
- College of Life Sciences, Hebei Agricultural University, Baoding, China
| | - Gang Liu
- State Key Laboratory of North China Crop Improvement and Regulation, Baoding, China
- Key Laboratory of Hebei Province for Plant Physiology and Molecular Pathology, Baoding, China
- College of Life Sciences, Hebei Agricultural University, Baoding, China
| | - Qian Wang
- State Key Laboratory of North China Crop Improvement and Regulation, Baoding, China
- Key Laboratory of Hebei Province for Plant Physiology and Molecular Pathology, Baoding, China
- College of Life Sciences, Hebei Agricultural University, Baoding, China
| | - Chunji Liu
- CSIRO Plant Industry, Brisbane, Australia
| | - Na Liu
- State Key Laboratory of North China Crop Improvement and Regulation, Baoding, China
- Key Laboratory of Hebei Province for Plant Physiology and Molecular Pathology, Baoding, China
- College of Life Sciences, Hebei Agricultural University, Baoding, China
| | - Shengfang Han
- State Key Laboratory of North China Crop Improvement and Regulation, Baoding, China
- Key Laboratory of Hebei Province for Plant Physiology and Molecular Pathology, Baoding, China
- College of Life Sciences, Hebei Agricultural University, Baoding, China
| | - Wenchao Zhen
- Key Laboratory of Regulation and Control of Crop Growth of Hebei, Baoding, China
- College of Agronomy, Hebei Agriculture University, Baoding, China
| | - Chunyan Hou
- State Key Laboratory of North China Crop Improvement and Regulation, Baoding, China
- Key Laboratory of Hebei Province for Plant Physiology and Molecular Pathology, Baoding, China
- College of Life Sciences, Hebei Agricultural University, Baoding, China
| | - Dongmei Wang
- State Key Laboratory of North China Crop Improvement and Regulation, Baoding, China
- Key Laboratory of Hebei Province for Plant Physiology and Molecular Pathology, Baoding, China
- College of Life Sciences, Hebei Agricultural University, Baoding, China
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Tian L, Hossbach BM, Feussner I. Small size, big impact: Small molecules in plant systemic immune signaling. CURRENT OPINION IN PLANT BIOLOGY 2024; 81:102618. [PMID: 39153327 DOI: 10.1016/j.pbi.2024.102618] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2024] [Revised: 07/29/2024] [Accepted: 07/29/2024] [Indexed: 08/19/2024]
Abstract
Plants produce diverse small molecules rapidly in response to localized pathogenic attack. Some of the molecules are able to migrate systemically as mobile signals, leading to the immune priming that protects the distal tissues against future infections by a broad-spectrum of invaders. Such form of defense is unique in plants and is known as systemic acquired resistance (SAR). There are many small molecules identified so far with important roles in the systemic immune signaling, some may have the potential to act as the mobile systemic signal in SAR establishment. Here, we summarize the recent advances in SAR research, with a focus on the role and mechanisms of different small molecules in systemic immune signaling.
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Affiliation(s)
- Lei Tian
- Department of Plant Biochemistry, Albrecht-von-Haller-Institute for Plant Sciences, University of Goettingen, Goettingen, D-37077, Germany
| | - Ben Moritz Hossbach
- Department of Plant Biochemistry, Albrecht-von-Haller-Institute for Plant Sciences, University of Goettingen, Goettingen, D-37077, Germany
| | - Ivo Feussner
- Department of Plant Biochemistry, Albrecht-von-Haller-Institute for Plant Sciences, University of Goettingen, Goettingen, D-37077, Germany; Department of Plant Biochemistry, Goettingen Center for Molecular Biosciences (GZMB), University of Goettingen, Goettingen, D-37077, Germany.
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Scholten N, Hartmann M, Abts S, Abts L, Reinartz E, Altavilla A, Müller TJJ, Zeier J. In-depth analysis of isochorismate synthase-derived metabolism in plant immunity: identification of meta-substituted benzoates and salicyloyl-malate. J Biol Chem 2024:107667. [PMID: 39128721 DOI: 10.1016/j.jbc.2024.107667] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2024] [Revised: 07/24/2024] [Accepted: 08/06/2024] [Indexed: 08/13/2024] Open
Abstract
Isochorismate-derived metabolism enables biosynthesis of the plant defence hormone salicylic acid (SA) and its derivatives. In Arabidopsis thaliana, the stress-induced accumulation of SA depends on ISOCHORISMATE SYNTHASE1 (ICS1), and also requires the presumed isochorismate transporter ENHANCED DISEASE SUSCEPTIBILITY5 (EDS5) and the GH3 enzyme avrPphB SUSCEPTIBLE3 (PBS3). By comparative metabolite and structural analyses, we identified several hitherto unreported ICS1- and EDS5-dependent, biotic stress-inducible Arabidopsis metabolites. These involve meta-substituted SA derivatives (5-formyl-SA, 5-carboxy-SA, 5-carboxymethyl-SA), their benzoic acid (BA) analogues (3-formyl-BA, 3-carboxy-BA, 3-carboxymethyl-BA) and, besides the previously detected salicyloyl-aspartate (SA-Asp), the ester conjugate salicyloyl-malate (SA-Mal). SA functions as a biosynthetic precursor for SA-Mal and SA-Asp, but not for the meta-substituted SA- and BA-derivatives, which accumulate to moderate levels at later stages of bacterial infection. Interestingly, Arabidopsis leaves possess oxidising activity to effectively convert meta-formyl- into meta-carboxy-SA/BAs. In contrast to SA, exogenously applied meta-substituted SA/BA-derivatives and SA-Mal exert moderate impact on plant immunity and defence-related gene expression. While the isochorismate-derived metabolites are negatively regulated by the SA receptor NON-EXPRESSOR OF PR GENES1, SA conjugates (SA-Mal, SA-Asp, SA-glucose conjugates) and meta-substituted SA/BA-derivatives are oppositely affected by PBS3. Notably, our data indicate a PBS3-independent path to isochorismate-derived SA at later stages of bacterial infection, which does not considerably impact immune-related characteristics. Moreover, our results argue against a previously proposed role of EDS5 in the biosynthesis of the immune signal N-hydroxypipecolic acid and associated transport processes. We propose a significantly extended biochemical scheme of plant isochorismate metabolism that involves an alternative generation mode for benzoate- and salicylate-derivatives.
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Affiliation(s)
- Nicola Scholten
- Institute for Molecular Ecophysiology of Plants, Department of Biology, Heinrich Heine University, Universitätsstraße 1, D-40225 Düsseldorf, Germany
| | - Michael Hartmann
- Institute for Molecular Ecophysiology of Plants, Department of Biology, Heinrich Heine University, Universitätsstraße 1, D-40225 Düsseldorf, Germany
| | - Sarah Abts
- Institute for Molecular Ecophysiology of Plants, Department of Biology, Heinrich Heine University, Universitätsstraße 1, D-40225 Düsseldorf, Germany
| | - Laura Abts
- Institute for Molecular Ecophysiology of Plants, Department of Biology, Heinrich Heine University, Universitätsstraße 1, D-40225 Düsseldorf, Germany
| | - Elke Reinartz
- Institute for Molecular Ecophysiology of Plants, Department of Biology, Heinrich Heine University, Universitätsstraße 1, D-40225 Düsseldorf, Germany
| | - Angelo Altavilla
- Institute of Organic Chemistry and Macromolecular Chemistry, Department of Chemistry, Heinrich Heine University, Universitätsstraße 1, D-40225 Düsseldorf, Germany
| | - Thomas J J Müller
- Institute of Organic Chemistry and Macromolecular Chemistry, Department of Chemistry, Heinrich Heine University, Universitätsstraße 1, D-40225 Düsseldorf, Germany
| | - Jürgen Zeier
- Institute for Molecular Ecophysiology of Plants, Department of Biology, Heinrich Heine University, Universitätsstraße 1, D-40225 Düsseldorf, Germany; Cluster of Excellence on Plant Sciences (CEPLAS), Heinrich Heine University, Universitätsstraße 1, D-40225 Düsseldorf, Germany.
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Thulasi Devendrakumar K, Herrfurth C, Yeap M, Peng TS, Feussner I, Li X. Balancing roles between phosphatidylinositols and sphingolipids in regulating immunity and ER stress responses in pi4kβ1,2. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2024. [PMID: 39074039 DOI: 10.1111/tpj.16952] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2024] [Revised: 06/08/2024] [Accepted: 07/16/2024] [Indexed: 07/31/2024]
Abstract
Plant immune regulation is complex. In addition to proteins, lipid molecules play critical roles in modulating immune responses. The mutant pi4kβ1,2 is mutated in two phosphatidylinositol 4-kinases PI4Kβ1 and β2 involved in the biosynthesis of phosphatidylinositol 4-phosphate (PI4P). The mutant displays autoimmunity, short roots, aberrant root hairs, and a heightened sensitivity to ER stress. In a forward genetic screen designed to dissect pi4kβ1,2 autoimmunity, we found that Orosomucoid-like 1 (ORM1) is required for the phenotypes of pi4kβ1,2, including short root and ER stress sensitivity. The orm1 mutations lead to increased long-chain base and ceramide levels in the suppressors. We also found that the basic region/leucine Zipper motif (bZIP) 28 and 60 transcription factors, central regulators of ER stress response, are required for its autoimmunity and root defect. In comparison, the defense-related phytohormones salicylic acid (SA) and N-hydroxypipecolic acid (NHP) are required for its autoimmunity but plays a minor role in its root phenotypes. Further, we found that wild-type plants overexpressing ORM1 are autoimmune, displaying short roots and increased ceramide levels. The autoimmunity of the ORM1 overexpression lines is dependent on SA, NHP, and bZIP60. As ORM1 is a known negative regulator of sphingolipid biosynthesis, our study uncovers a balancing role between PIs and sphingolipids in regulating immunity and ER stress responses in pi4kβ1,2.
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Affiliation(s)
- Karen Thulasi Devendrakumar
- Michael Smith Laboratories, University of British Columbia, Vancouver, British Columbia, V6T 1Z4, Canada
- Department of Botany, University of British Columbia, Vancouver, British Columbia, V6T 1Z4, Canada
| | - Cornelia Herrfurth
- Albrecht-von-Haller-Institute for Plant Sciences, Department of Plant Biochemistry, University of Goettingen, Goettingen, D-37077, Germany
- Goettingen Center for Molecular Biosciences (GZMB), Service Unit for Metabolomics and Lipidomics, University of Goettingen, Goettingen, D-37077, Germany
| | - Mikaela Yeap
- Michael Smith Laboratories, University of British Columbia, Vancouver, British Columbia, V6T 1Z4, Canada
| | - Tony ShengZhe Peng
- Michael Smith Laboratories, University of British Columbia, Vancouver, British Columbia, V6T 1Z4, Canada
| | - Ivo Feussner
- Albrecht-von-Haller-Institute for Plant Sciences, Department of Plant Biochemistry, University of Goettingen, Goettingen, D-37077, Germany
- Goettingen Center for Molecular Biosciences (GZMB), Service Unit for Metabolomics and Lipidomics, University of Goettingen, Goettingen, D-37077, Germany
- Goettingen Center for Molecular Biosciences (GZMB), Department of Plant Biochemistry, University of Goettingen, Goettingen, D-37077, Germany
| | - Xin Li
- Michael Smith Laboratories, University of British Columbia, Vancouver, British Columbia, V6T 1Z4, Canada
- Department of Botany, University of British Columbia, Vancouver, British Columbia, V6T 1Z4, Canada
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Liu D, Mao X, Zhang G, He L, Wang L, Zhang F, Wang Q, Zhou L. Antifungal Activity and Mechanism of Physcion against Sclerotium rolfsii, the Causal Agent of Peanut Southern Blight. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2024; 72:15601-15612. [PMID: 38950526 DOI: 10.1021/acs.jafc.4c02519] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/03/2024]
Abstract
Peanut southern blight, caused by the soil-borne pathogen Sclerotium rolfsii, is a widespread and devastating epidemic. Frequently, it is laborious to effectively control by labor-intensive foliar sprays of agrochemicals due to untimely find. In the present study, seed treatment with physcion (PHY) at doses of 0.08, 0.16, and 0.32 g AI kg-1 seed significantly improved the growth and photosynthetic activity of peanuts. Furthermore, PHY seed treatment resulted in an elevated enzymatic activity of key enzymes in peanut roots, including peroxidase, superoxide dismutase, polyphenol oxidase, catalase, lipoxygenase, and phenylalanine ammonia-lyase, as well as an increase in callus accumulation and lignin synthesis at the infection site, ultimately enhancing the root activity. This study revealed that PHY seed treatment could promote the accumulation of reactive oxygen species, salicylic acid (SA), and jasmonic acid (JA)/ethylene (ET) in peanut roots, while also decreasing the content of malondialdehyde levels in response to S. rolfsii infection. The results were further confirmed by transcriptome data and metabolomics. These findings suggest that PHY seed treatment activates the plant defense pathways mediated by SA and JA/ET in peanut roots, enhancing the resistance of peanut plants to S. rolfsii. In short, PHY is expected to be developed into a new plant-derived immunostimulant or fungicide to increase the options and means for peanut disease control.
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Affiliation(s)
- Di Liu
- College of Plant Protection, Henan Agricultural University, Zhengzhou 450046, China
- Henan Key Laboratory of Creation and Application of New Pesticide, Henan Agricultural University, No. 63, Agricultural Road, Zhengzhou 450046, China
- Henan Research Center of Green Pesticide Engineering and Technology, Henan Agricultural University, Zhengzhou 450046, China
| | - Xuewei Mao
- College of Plant Protection, Henan Agricultural University, Zhengzhou 450046, China
- Henan Key Laboratory of Creation and Application of New Pesticide, Henan Agricultural University, No. 63, Agricultural Road, Zhengzhou 450046, China
- Henan Research Center of Green Pesticide Engineering and Technology, Henan Agricultural University, Zhengzhou 450046, China
| | - Guoyan Zhang
- Plant Protection and Quarantine Station of Henan Province, Zhengzhou 450002, China
| | - Leiming He
- College of Plant Protection, Henan Agricultural University, Zhengzhou 450046, China
- Henan Key Laboratory of Creation and Application of New Pesticide, Henan Agricultural University, No. 63, Agricultural Road, Zhengzhou 450046, China
- Henan Research Center of Green Pesticide Engineering and Technology, Henan Agricultural University, Zhengzhou 450046, China
| | - Li Wang
- College of Plant Protection, Henan Agricultural University, Zhengzhou 450046, China
- Henan Key Laboratory of Creation and Application of New Pesticide, Henan Agricultural University, No. 63, Agricultural Road, Zhengzhou 450046, China
- Henan Research Center of Green Pesticide Engineering and Technology, Henan Agricultural University, Zhengzhou 450046, China
| | - Fulong Zhang
- Inner Mongolia Kingbo Biotech. Co., Ltd, Bayannur 015200, China
| | - Qinqin Wang
- College of Plant Protection, Henan Agricultural University, Zhengzhou 450046, China
- Henan Key Laboratory of Creation and Application of New Pesticide, Henan Agricultural University, No. 63, Agricultural Road, Zhengzhou 450046, China
- Henan Research Center of Green Pesticide Engineering and Technology, Henan Agricultural University, Zhengzhou 450046, China
| | - Lin Zhou
- College of Plant Protection, Henan Agricultural University, Zhengzhou 450046, China
- Henan Key Laboratory of Creation and Application of New Pesticide, Henan Agricultural University, No. 63, Agricultural Road, Zhengzhou 450046, China
- Henan Research Center of Green Pesticide Engineering and Technology, Henan Agricultural University, Zhengzhou 450046, China
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Sommer A, Wenig M, Knappe C, Kublik S, Foesel BU, Schloter M, Vlot AC. A salicylic acid-associated plant-microbe interaction attracts beneficial Flavobacterium sp. to the Arabidopsis thaliana phyllosphere. PHYSIOLOGIA PLANTARUM 2024; 176:e14483. [PMID: 39169536 DOI: 10.1111/ppl.14483] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2024] [Revised: 06/27/2024] [Accepted: 07/02/2024] [Indexed: 08/23/2024]
Abstract
Both above- and below-ground parts of plants are constantly challenged with microbes and interact closely with them. Many plant-growth-promoting rhizobacteria, mostly interacting with the plant's root system, enhance the immunity of plants in a process described as induced systemic resistance (ISR). Here, we characterized local induced resistance (IR) triggered by the model PGPR Pseudomonas simiae WCS417r (WCS417) in Arabidopsis thaliana. Hydroponic application of WCS417 to Arabidopsis roots resulted in propagation of WCS417 in/on leaves and the establishment of local IR. WCS417-triggered local IR was dependent on salicylic acid (SA) biosynthesis and signalling and on functional biosynthesis of pipecolic acid and monoterpenes, which are classically associated with systemic acquired resistance (SAR). WCS417-triggered local IR was further associated with a priming of gene expression changes related to SA signalling and SAR. A metabarcoding approach applied to the leaf microbiome revealed a significant local IR-associated enrichment of Flavobacterium sp.. Co-inoculation experiments using WCS417 and At-LSPHERE Flavobacterium sp. Leaf82 suggest that the proliferation of these bacteria is influenced by both microbial and immunity-related, plant-derived factors. Furthermore, application of Flavobacterium Leaf82 to Arabidopsis leaves induced SAR in an NPR1-dependent manner, suggesting that recruitment of this bacterium to the phyllosphere resulted in propagation of IR. Together, the data highlight the importance of plant-microbe-microbe interactions in the phyllosphere and reveal Flavobacterium sp. Leaf82 as a new beneficial promoter of plant health.
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Affiliation(s)
- Anna Sommer
- Faculty of Life Sciences: Food, Nutrition and Health, Chair of Crop Plant Genetics, University of Bayreuth, Kulmbach, Germany
- Helmholtz Zentrum Muenchen, Institute of Biochemical Plant Pathology, Neuherberg, Germany
| | - Marion Wenig
- Helmholtz Zentrum Muenchen, Institute of Biochemical Plant Pathology, Neuherberg, Germany
| | - Claudia Knappe
- Helmholtz Zentrum Muenchen, Institute of Biochemical Plant Pathology, Neuherberg, Germany
| | - Susanne Kublik
- Helmholtz Zentrum Muenchen, Institute for Comparative Microbiome Analysis, Neuherberg, Germany
| | - Bärbel U Foesel
- Helmholtz Zentrum Muenchen, Institute for Comparative Microbiome Analysis, Neuherberg, Germany
| | - Michael Schloter
- Helmholtz Zentrum Muenchen, Institute for Comparative Microbiome Analysis, Neuherberg, Germany
- Chair for Environmental Microbiology, Technische Universität München, Freising, Germany
| | - A Corina Vlot
- Faculty of Life Sciences: Food, Nutrition and Health, Chair of Crop Plant Genetics, University of Bayreuth, Kulmbach, Germany
- Helmholtz Zentrum Muenchen, Institute of Biochemical Plant Pathology, Neuherberg, Germany
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Lan J, Chen S, Pico J, Ao K, Xia S, Wang S, Li X, Castellarin SD, Zhang Y. Epigenetic regulation of N-hydroxypipecolic acid biosynthesis by the AIPP3-PHD2-CPL2 complex. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2023; 65:2660-2671. [PMID: 37867412 DOI: 10.1111/jipb.13577] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2023] [Accepted: 10/20/2023] [Indexed: 10/24/2023]
Abstract
N-Hydroxypipecolic acid (NHP) is a signaling molecule crucial for systemic acquired resistance (SAR), a systemic immune response in plants that provides long-lasting and broad-spectrum protection against secondary pathogen infections. To identify negative regulators of NHP biosynthesis, we performed a forward genetic screen to search for mutants with elevated expression of the NHP biosynthesis gene FLAVIN-DEPENDENT MONOOXYGENASE 1 (FMO1). Analysis of two constitutive expression of FMO1 (cef) and one induced expression of FMO1 (ief) mutants revealed that the AIPP3-PHD2-CPL2 protein complex, which is involved in the recognition of the histone modification H3K27me3 and transcriptional repression, contributes to the negative regulation of FMO1 expression and NHP biosynthesis. Our study suggests that epigenetic regulation plays a crucial role in controlling FMO1 expression and NHP levels in plants.
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Affiliation(s)
- Jiameng Lan
- Department of Botany, University of British Columbia, Vancouver, V6T 1Z4, Canada
| | - Siyu Chen
- Department of Botany, University of British Columbia, Vancouver, V6T 1Z4, Canada
- Laboratory of Plant Molecular Genetics & Crop Gene Editing, School of Life Sciences, Linyi University, Linyi, 276005, China
| | - Joana Pico
- Wine Research Centre, Faculty of Land and Food Systems, University of British Columbia, Vancouver, V6T 1Z4, Canada
| | - Kevin Ao
- Department of Botany, University of British Columbia, Vancouver, V6T 1Z4, Canada
- Michael Smith Laboratories, University of British Columbia, Vancouver, V6T 1Z4, Canada
| | - Shitou Xia
- Hunan Provincial Key Laboratory of Phytohormones, Hunan Agricultural University, Changsha, 410125, China
| | - Shucai Wang
- Laboratory of Plant Molecular Genetics & Crop Gene Editing, School of Life Sciences, Linyi University, Linyi, 276005, China
| | - Xin Li
- Department of Botany, University of British Columbia, Vancouver, V6T 1Z4, Canada
- Michael Smith Laboratories, University of British Columbia, Vancouver, V6T 1Z4, Canada
| | - Simone D Castellarin
- Wine Research Centre, Faculty of Land and Food Systems, University of British Columbia, Vancouver, V6T 1Z4, Canada
| | - Yuelin Zhang
- Department of Botany, University of British Columbia, Vancouver, V6T 1Z4, Canada
- College of Life Science, Sichuan University, Chengdu, 610064, China
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Wilson SK, Pretorius T, Naidoo S. Mechanisms of systemic resistance to pathogen infection in plants and their potential application in forestry. BMC PLANT BIOLOGY 2023; 23:404. [PMID: 37620815 PMCID: PMC10463331 DOI: 10.1186/s12870-023-04391-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/21/2023] [Accepted: 07/24/2023] [Indexed: 08/26/2023]
Abstract
BACKGROUND The complex systemic responses of tree species to fight pathogen infection necessitate attention due to the potential for yield protection in forestry. RESULTS In this paper, both the localized and systemic responses of model plants, such as Arabidopsis and tobacco, are reviewed. These responses were compared to information available that investigates similar responses in woody plant species and their key differences were highlighted. In addition, tree-specific responses that have been documented were summarised, with the critical responses still relying on certain systemic acquired resistance pathways. Importantly, coniferous species have been shown to utilise phenolic compounds in their immune responses. Here we also highlight the lack of focus on systemic induced susceptibility in trees, which can be important to forest health. CONCLUSIONS This review highlights the possible mechanisms of systemic response to infection in woody plant species, their potential applications, and where research may be best focused in future.
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Affiliation(s)
- S K Wilson
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria, 0028, South Africa
| | - T Pretorius
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria, 0028, South Africa
| | - S Naidoo
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria, 0028, South Africa.
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Löwe M, Jürgens K, Zeier T, Hartmann M, Gruner K, Müller S, Yildiz I, Perrar M, Zeier J. N-hydroxypipecolic acid primes plants for enhanced microbial pattern-induced responses. FRONTIERS IN PLANT SCIENCE 2023; 14:1217771. [PMID: 37645466 PMCID: PMC10461098 DOI: 10.3389/fpls.2023.1217771] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2023] [Accepted: 07/11/2023] [Indexed: 08/31/2023]
Abstract
The bacterial elicitor flagellin induces a battery of immune responses in plants. However, the rates and intensities by which metabolically-related defenses develop upon flagellin-sensing are comparatively moderate. We report here that the systemic acquired resistance (SAR) inducer N-hydroxypipecolic acid (NHP) primes Arabidopsis thaliana plants for strongly enhanced metabolic and transcriptional responses to treatment by flg22, an elicitor-active peptide fragment of flagellin. While NHP powerfully activated priming of the flg22-induced accumulation of the phytoalexin camalexin, biosynthesis of the stress hormone salicylic acid (SA), generation of the NHP biosynthetic precursor pipecolic acid (Pip), and accumulation of the stress-inducible lipids γ-tocopherol and stigmasterol, it more modestly primed for the flg22-triggered generation of aromatic and branched-chain amino acids, and expression of FLG22-INDUCED RECEPTOR-KINASE1. The characterization of the biochemical and immune phenotypes of a set of different Arabidopsis single and double mutants impaired in NHP and/or SA biosynthesis indicates that, during earlier phases of the basal immune response of naïve plants to Pseudomonas syringae infection, NHP and SA mutually promote their biosynthesis and additively enhance camalexin formation, while SA prevents extraordinarily high NHP levels in later interaction periods. Moreover, SA and NHP additively contribute to Arabidopsis basal immunity to bacterial and oomycete infection, as well as to the flagellin-induced acquired resistance response that is locally observed in plant tissue exposed to exogenous flg22. Our data reveal mechanistic similarities and differences between the activation modes of flagellin-triggered acquired resistance in local tissue and the SAR state that is systemically induced in plants upon pathogen attack. They also corroborate that the NHP precursor Pip has no independent immune-related activity.
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Affiliation(s)
- Marie Löwe
- Institute for Molecular Ecophysiology of Plants, Department of Biology, Heinrich Heine University, Düsseldorf, Germany
| | - Katharina Jürgens
- Institute for Molecular Ecophysiology of Plants, Department of Biology, Heinrich Heine University, Düsseldorf, Germany
| | - Tatyana Zeier
- Institute for Molecular Ecophysiology of Plants, Department of Biology, Heinrich Heine University, Düsseldorf, Germany
| | - Michael Hartmann
- Institute for Molecular Ecophysiology of Plants, Department of Biology, Heinrich Heine University, Düsseldorf, Germany
| | - Katrin Gruner
- Institute for Molecular Ecophysiology of Plants, Department of Biology, Heinrich Heine University, Düsseldorf, Germany
| | - Sylvia Müller
- Institute for Molecular Ecophysiology of Plants, Department of Biology, Heinrich Heine University, Düsseldorf, Germany
| | - Ipek Yildiz
- Institute for Molecular Ecophysiology of Plants, Department of Biology, Heinrich Heine University, Düsseldorf, Germany
| | - Mona Perrar
- Institute for Molecular Ecophysiology of Plants, Department of Biology, Heinrich Heine University, Düsseldorf, Germany
| | - Jürgen Zeier
- Institute for Molecular Ecophysiology of Plants, Department of Biology, Heinrich Heine University, Düsseldorf, Germany
- Cluster of Excellence on Plant Sciences (CEPLAS), Heinrich Heine University, Düsseldorf, Germany
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10
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Xiong W, Berke L, Michelmore R, van Workum DJM, Becker FFM, Schijlen E, Bakker LV, Peters S, van Treuren R, Jeuken M, Bouwmeester K, Schranz ME. The genome of Lactuca saligna, a wild relative of lettuce, provides insight into non-host resistance to the downy mildew Bremia lactucae. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2023; 115:108-126. [PMID: 36987839 DOI: 10.1111/tpj.16212] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2022] [Revised: 02/20/2023] [Accepted: 02/27/2023] [Indexed: 06/19/2023]
Abstract
Lactuca saligna L. is a wild relative of cultivated lettuce (Lactuca sativa L.), with which it is partially interfertile. Hybrid progeny suffer from hybrid incompatibility (HI), resulting in reduced fertility and distorted transmission ratios. Lactuca saligna displays broad-spectrum resistance against lettuce downy mildew caused by Bremia lactucae Regel and is considered a non-host species. This phenomenon of resistance in L. saligna is called non-host resistance (NHR). One possible mechanism behind this NHR is through the plant-pathogen interaction triggered by pathogen recognition receptors, including nucleotide-binding leucine-rich repeat (NLR) proteins and receptor-like kinases (RLKs). We report a chromosome-level genome assembly of L. saligna (accession CGN05327), leading to the identification of two large paracentric inversions (>50 Mb) between L. saligna and L. sativa. Genome-wide searches delineated the major resistance clusters as regions enriched in NLRs and RLKs. Three of the enriched regions co-locate with previously identified NHR intervals. RNA-seq analysis of Bremia-infected lettuce identified several differentially expressed RLKs in NHR regions. Three tandem wall-associated kinase-encoding genes (WAKs) in the NHR8 interval display particularly high expression changes at an early stage of infection. We propose RLKs as strong candidates for determinants of the NHR phenotype of L. saligna.
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Affiliation(s)
- Wei Xiong
- Biosystematics Group, Wageningen University and Research, Wageningen, The Netherlands
| | - Lidija Berke
- Biosystematics Group, Wageningen University and Research, Wageningen, The Netherlands
| | - Richard Michelmore
- Genome Center and Department of Plant Sciences, University of California, Davis, CA, USA
| | | | - Frank F M Becker
- Biosystematics Group, Wageningen University and Research, Wageningen, The Netherlands
| | - Elio Schijlen
- Bioscience, Wageningen University and Research, Wageningen, The Netherlands
| | - Linda V Bakker
- Bioscience, Wageningen University and Research, Wageningen, The Netherlands
| | - Sander Peters
- Bioscience, Wageningen University and Research, Wageningen, The Netherlands
| | - Rob van Treuren
- Centre for Genetic Resources, The Netherlands (CGN), Wageningen University and Research, Wageningen, The Netherlands
| | - Marieke Jeuken
- Plant Breeding, Wageningen University and Research, Wageningen, The Netherlands
| | - Klaas Bouwmeester
- Biosystematics Group, Wageningen University and Research, Wageningen, The Netherlands
| | - M Eric Schranz
- Biosystematics Group, Wageningen University and Research, Wageningen, The Netherlands
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11
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Yildiz I, Gross M, Moser D, Petzsch P, Köhrer K, Zeier J. N-hydroxypipecolic acid induces systemic acquired resistance and transcriptional reprogramming via TGA transcription factors. PLANT, CELL & ENVIRONMENT 2023; 46:1900-1920. [PMID: 36790086 DOI: 10.1111/pce.14572] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/18/2022] [Accepted: 02/12/2023] [Indexed: 05/04/2023]
Abstract
N-hydroxypipecolic acid (NHP) accumulates in pathogen-inoculated and distant leaves of the Arabidopsis shoot and induces systemic acquired resistance (SAR) in dependence of the salicylic acid (SA) receptor NPR1. We report here that SAR triggered by exogenous NHP treatment requires the function of the transcription factors TGA2/5/6 in addition to NPR1, and is further positively affected by TGA1/4. Consistently, a tga2/5/6 triple knockout mutant is fully impaired in NHP-induced SAR gene expression, while a tga1/4 double mutant shows an attenuated, partial transcriptional response to NHP. Moreover, tga2/5/6 and tga1/4 exhibited fully and strongly impaired pathogen-triggered SAR, respectively, while SA-induced resistance was more moderately compromised in both lines. At the same time, tga2/5/6 was not and tga1/4 only partially impaired in the accumulation of NHP and SA at sites of bacterial attack. Strikingly, SAR gene expression in the systemic tissue induced by local bacterial inoculation or locally applied NHP fully required functional TGA2/5/6 and largely depended on TGA1/4 factors. The systemic accumulation of NHP and SA was attenuated but not abolished in the SAR-compromised and transcriptionally blocked tga mutants, suggesting their transport from inoculated to systemic tissue. Our results indicate the existence of a critical TGA- and NPR1-dependent transcriptional module that mediates the induction of SAR and systemic defence gene expression by NHP.
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Affiliation(s)
- Ipek Yildiz
- Department of Biology, Institute for Molecular Ecophysiology of Plants, Heinrich Heine University, Düsseldorf, Germany
| | - Marlene Gross
- Department of Biology, Institute for Molecular Ecophysiology of Plants, Heinrich Heine University, Düsseldorf, Germany
| | - Denise Moser
- Department of Biology, Institute for Molecular Ecophysiology of Plants, Heinrich Heine University, Düsseldorf, Germany
| | - Patrick Petzsch
- Biological and Medical Research Center (BMFZ), Medical Faculty, Heinrich Heine University, Düsseldorf, Germany
| | - Karl Köhrer
- Biological and Medical Research Center (BMFZ), Medical Faculty, Heinrich Heine University, Düsseldorf, Germany
| | - Jürgen Zeier
- Department of Biology, Institute for Molecular Ecophysiology of Plants, Heinrich Heine University, Düsseldorf, Germany
- Cluster of Excellence on Plant Sciences (CEPLAS), Heinrich Heine University, Düsseldorf, Germany
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12
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Fu Y, Fan B, Li X, Bao H, Zhu C, Chen Z. Autophagy and multivesicular body pathways cooperate to protect sulfur assimilation and chloroplast functions. PLANT PHYSIOLOGY 2023; 192:886-909. [PMID: 36852939 PMCID: PMC10231471 DOI: 10.1093/plphys/kiad133] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/20/2022] [Revised: 01/23/2023] [Accepted: 02/02/2023] [Indexed: 06/01/2023]
Abstract
Autophagy and multivesicular bodies (MVBs) represent 2 closely related lysosomal/vacuolar degradation pathways. In Arabidopsis (Arabidopsis thaliana), autophagy is stress-induced, with deficiency in autophagy causing strong defects in stress responses but limited effects on growth. LYST-INTERACTING PROTEIN 5 (LIP5) is a key regulator of stress-induced MVB biogenesis, and mutation of LIP5 also strongly compromises stress responses with little effect on growth in Arabidopsis. To determine the functional interactions of these 2 pathways in Arabidopsis, we generated mutations in both the LIP5 and AUTOPHAGY-RELATED PROTEIN (ATG) genes. atg5/lip5 and atg7/lip5 double mutants displayed strong synergistic phenotypes in fitness characterized by stunted growth, early senescence, reduced survival, and greatly diminished seed production under normal growth conditions. Transcriptome and metabolite analysis revealed that chloroplast sulfate assimilation was specifically downregulated at early seedling stages in the atg7/lip5 double mutant prior to the onset of visible phenotypes. Overexpression of adenosine 5'-phosphosulfate reductase 1, a key enzyme in sulfate assimilation, substantially improved the growth and fitness of the atg7/lip5 double mutant. Comparative multi-omic analysis further revealed that the atg7/lip5 double mutant was strongly compromised in other chloroplast functions including photosynthesis and primary carbon metabolism. Premature senescence and reduced survival of atg/lip5 double mutants were associated with increased accumulation of reactive oxygen species and overactivation of stress-associated programs. Blocking PHYTOALEXIN DEFICIENT 4 and salicylic acid signaling prevented early senescence and death of the atg7/lip5 double mutant. Thus, stress-responsive autophagy and MVB pathways play an important cooperative role in protecting essential chloroplast functions including sulfur assimilation under normal growth conditions to suppress salicylic-acid-dependent premature cell-death and promote plant growth and fitness.
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Affiliation(s)
- Yunting Fu
- College of Life Sciences, China Jiliang University, Hangzhou 310018, China
| | - Baofang Fan
- Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN 47907-2054, USA
| | - Xifeng Li
- College of Life Sciences, China Jiliang University, Hangzhou 310018, China
| | - Hexigeduleng Bao
- College of Life Sciences, China Jiliang University, Hangzhou 310018, China
- Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN 47907-2054, USA
| | - Cheng Zhu
- College of Life Sciences, China Jiliang University, Hangzhou 310018, China
| | - Zhixiang Chen
- College of Life Sciences, China Jiliang University, Hangzhou 310018, China
- Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN 47907-2054, USA
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13
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Paauw M, van Hulten M, Chatterjee S, Berg JA, Taks NW, Giesbers M, Richard MMS, van den Burg HA. Hydathode immunity protects the Arabidopsis leaf vasculature against colonization by bacterial pathogens. Curr Biol 2023; 33:697-710.e6. [PMID: 36731466 DOI: 10.1016/j.cub.2023.01.013] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2022] [Revised: 10/27/2022] [Accepted: 01/09/2023] [Indexed: 02/04/2023]
Abstract
Plants prevent disease by passively and actively protecting potential entry routes against invading microbes. For example, the plant immune system actively guards roots, wounds, and stomata. How plants prevent vascular disease upon bacterial entry via guttation fluids excreted from specialized glands at the leaf margin remains largely unknown. These so-called hydathodes release xylem sap when root pressure is too high. By studying hydathode colonization by both hydathode-adapted (Xanthomonas campestris pv. campestris) and non-adapted pathogenic bacteria (Pseudomonas syringae pv. tomato) in immunocompromised Arabidopsis mutants, we show that the immune hubs BAK1 and EDS1-PAD4-ADR1 restrict bacterial multiplication in hydathodes. Both immune hubs effectively confine bacterial pathogens to hydathodes and lower the number of successful escape events of an hydathode-adapted pathogen toward the xylem. A second layer of defense, which is dependent on the plant hormones' pipecolic acid and to a lesser extent on salicylic acid, reduces the vascular spread of the pathogen. Thus, besides glands, hydathodes represent a potent first line of defense against leaf-invading microbes.
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Affiliation(s)
- Misha Paauw
- Molecular Plant Pathology, Swammerdam Institute for Life Sciences (SILS), University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands
| | - Marieke van Hulten
- Molecular Plant Pathology, Swammerdam Institute for Life Sciences (SILS), University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands
| | - Sayantani Chatterjee
- Molecular Plant Pathology, Swammerdam Institute for Life Sciences (SILS), University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands
| | - Jeroen A Berg
- Molecular Plant Pathology, Swammerdam Institute for Life Sciences (SILS), University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands
| | - Nanne W Taks
- Molecular Plant Pathology, Swammerdam Institute for Life Sciences (SILS), University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands
| | - Marcel Giesbers
- Wageningen Electron Microscopy Centre, Department of Plant Sciences, Wageningen University & Research, Droevendaalsesteeg 4, 6708 PB Wageningen, The Netherlands
| | - Manon M S Richard
- Molecular Plant Pathology, Swammerdam Institute for Life Sciences (SILS), University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands
| | - Harrold A van den Burg
- Molecular Plant Pathology, Swammerdam Institute for Life Sciences (SILS), University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands.
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14
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Rawat AA, Hartmann M, Harzen A, Lugan R, Stolze SC, Forzani C, Abts L, Reißenweber S, Rayapuram N, Nakagami H, Zeier J, Hirt H. OXIDATIVE SIGNAL-INDUCIBLE1 induces immunity by coordinating N-hydroxypipecolic acid, salicylic acid, and camalexin synthesis. THE NEW PHYTOLOGIST 2023; 237:1285-1301. [PMID: 36319610 PMCID: PMC10107268 DOI: 10.1111/nph.18592] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/06/2022] [Accepted: 10/26/2022] [Indexed: 06/16/2023]
Abstract
Expression of OXIDATIVE SIGNAL-INDUCIBLE1 (OXI1) is induced by a number of stress conditions and regulates the interaction of plants with pathogenic and beneficial microbes. In this work, we generated Arabidopsis OXI1 knockout and genomic OXI1 overexpression lines and show by transcriptome, proteome, and metabolome analysis that OXI1 triggers ALD1, SARD4, and FMO1 expressions to promote the biosynthesis of pipecolic acid (Pip) and N-hydroxypipecolic acid (NHP). OXI1 contributes to enhanced immunity by induced SA biosynthesis via CBP60g-induced expression of SID2 and camalexin accumulation via WRKY33-targeted transcription of PAD3. OXI1 regulates genes involved in reactive oxygen species (ROS) generation such as RbohD and RbohF. OXI1 knock out plants show enhanced expression of nuclear and chloroplast genes of photosynthesis and enhanced growth under ambient conditions, while OXI1 overexpressing plants accumulate NHP, SA, camalexin, and ROS and show a gain-of-function (GOF) cell death phenotype and enhanced pathogen resistance. The OXI1 GOF phenotypes are completely suppressed when compromising N-hydroxypipecolic acid (NHP) synthesis in the fmo1 or ald1 background, showing that OXI1 regulation of immunity is mediated via the NHP pathway. Overall, these results show that OXI1 plays a key role in basal and effector-triggered plant immunity by regulating defense and programmed cell death via biosynthesis of salicylic acid, N-hydroxypipecolic acid, and camalexin.
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Affiliation(s)
- Anamika A. Rawat
- Darwin21 Desert Initiative, Biological and Environmental Sciences and Engineering DivisionKing Abdullah University of Science and Technology (KAUST)Thuwal23955Saudi Arabia
| | - Michael Hartmann
- Department of Biology, Institute for Molecular Ecophysiology of PlantsHeinrich Heine UniversityUniversitätsstraße 1DüsseldorfD‐40225Germany
| | - Anne Harzen
- Max Planck Institute for Plant Breeding ResearchCologneD‐50829Germany
| | - Raphael Lugan
- UMR QualisudAvignon UniversitéAvignon Cedex 984916France
| | | | - Celine Forzani
- Department of Plant Molecular BiologyUniversity of ViennaDr. Bohrgasse 9Vienna1030Austria
| | - Laura Abts
- Department of Biology, Institute for Molecular Ecophysiology of PlantsHeinrich Heine UniversityUniversitätsstraße 1DüsseldorfD‐40225Germany
| | - Sophie Reißenweber
- Department of Biology, Institute for Molecular Ecophysiology of PlantsHeinrich Heine UniversityUniversitätsstraße 1DüsseldorfD‐40225Germany
| | - Naganand Rayapuram
- Darwin21 Desert Initiative, Biological and Environmental Sciences and Engineering DivisionKing Abdullah University of Science and Technology (KAUST)Thuwal23955Saudi Arabia
| | - Hirofumi Nakagami
- Max Planck Institute for Plant Breeding ResearchCologneD‐50829Germany
| | - Jürgen Zeier
- Department of Biology, Institute for Molecular Ecophysiology of PlantsHeinrich Heine UniversityUniversitätsstraße 1DüsseldorfD‐40225Germany
- Cluster of Excellence on Plant Sciences (CEPLAS)Heinrich Heine UniversityUniversitätsstraße 1DüsseldorfD‐40225Germany
| | - Heribert Hirt
- Darwin21 Desert Initiative, Biological and Environmental Sciences and Engineering DivisionKing Abdullah University of Science and Technology (KAUST)Thuwal23955Saudi Arabia
- Department of Plant Molecular BiologyUniversity of ViennaDr. Bohrgasse 9Vienna1030Austria
- Institute of Plant Sciences Paris‐Saclay IPS2, CNRS, INRAe, Université Paris‐Sud, Université Evry, Université Paris‐SaclayBâtiment63091405 OrsayFrance
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15
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Interconnected Set of Enzymes Provide Lysine Biosynthetic Intermediates and Ornithine Derivatives as Key Precursors for the Biosynthesis of Bioactive Secondary Metabolites. Antibiotics (Basel) 2023; 12:antibiotics12010159. [PMID: 36671360 PMCID: PMC9854754 DOI: 10.3390/antibiotics12010159] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2022] [Revised: 01/08/2023] [Accepted: 01/09/2023] [Indexed: 01/15/2023] Open
Abstract
Bacteria, filamentous fungi, and plants synthesize thousands of secondary metabolites with important biological and pharmacological activities. The biosynthesis of these metabolites is performed by networks of complex enzymes such as non-ribosomal peptide synthetases, polyketide synthases, and terpenoid biosynthetic enzymes. The efficient production of these metabolites is dependent upon the supply of precursors that arise from primary metabolism. In the last decades, an impressive array of biosynthetic enzymes that provide specific precursors and intermediates leading to secondary metabolites biosynthesis has been reported. Suitable knowledge of the elaborated pathways that synthesize these precursors or intermediates is essential for advancing chemical biology and the production of natural or semisynthetic biological products. Two of the more prolific routes that provide key precursors in the biosynthesis of antitumor, immunosuppressant, antifungal, or antibacterial compounds are the lysine and ornithine pathways, which are involved in the biosynthesis of β-lactams and other non-ribosomal peptides, and bacterial and fungal siderophores. Detailed analysis of the molecular genetics and biochemistry of the enzyme system shows that they are formed by closely related components. Particularly the focus of this study is on molecular genetics and the enzymatic steps that lead to the formation of intermediates of the lysine pathway, such as α-aminoadipic acid, saccharopine, pipecolic acid, and related compounds, and of ornithine-derived molecules, such as N5-Acetyl-N5-Hydroxyornithine and N5-anhydromevalonyl-N5-hydroxyornithine, which are precursors of siderophores. We provide evidence that shows interesting functional relationships between the genes encoding the enzymes that synthesize these products. This information will contribute to a better understanding of the possibilities of advancing the industrial applications of synthetic biology.
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16
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Mohnike L, Huang W, Worbs B, Feussner K, Zhang Y, Feussner I. N-Hydroxy pipecolic acid methyl ester is involved in Arabidopsis immunity. JOURNAL OF EXPERIMENTAL BOTANY 2023; 74:458-471. [PMID: 36260503 PMCID: PMC9786843 DOI: 10.1093/jxb/erac422] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/03/2022] [Accepted: 10/17/2022] [Indexed: 05/31/2023]
Abstract
The biosynthesis of N-hydroxy pipecolic acid (NHP) has been intensively studied, though knowledge on its metabolic turnover is still scarce. To close this gap, we discovered three novel metabolites via metabolite fingerprinting in Arabidopsis thaliana leaves after Pseudomonas infection and UV-C treatment. Exact mass information and fragmentation by tandem mass spectrometry (MS/MS) suggest a methylated derivative of NHP (MeNHP), an NHP-OGlc-hexosyl conjugate (NHP-OGlc-Hex), and an additional NHP-OGlc-derivative. All three compounds were formed in wild-type leaves but were not present in the NHP-deficient mutant fmo1-1. The identification of these novel NHP-based molecules was possible by a dual-infiltration experiment using a mixture of authentic NHP and D9-NHP standards for leaf infiltration followed by UV-C treatment. Interestingly, the signal intensity of MeNHP and other NHP-derived metabolites increased in ugt76b1-1 mutant plants. For MeNHP, we unequivocally determined the site of methylation at the carboxylic acid moiety. MeNHP application by leaf infiltration leads to the detection of a MeNHP-OGlc as well as NHP, suggesting MeNHP hydrolysis to NHP. This is in line with the observation that MeNHP infiltration is able to rescue the fmo1-1 susceptible phenotype against Hyaloperonospora arabidopsidis Noco 2. Together, these data suggest MeNHP as an additional storage or transport form of NHP.
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Affiliation(s)
- Lennart Mohnike
- University of Goettingen, Albrecht-von-Haller-Institute for Plant Sciences, Department of Plant Biochemistry, D-37077 Goettingen, Germany
| | - Weijie Huang
- University of British Columbia, Department of Botany, V6T 1Z4 Vancouver (BC), Canada
| | - Brigitte Worbs
- University of Goettingen, Institute for Organic and Biomolecular Chemistry, Department of Organic Chemistry, D-37077 Goettingen, Germany
| | - Kirstin Feussner
- University of Goettingen, Albrecht-von-Haller-Institute for Plant Sciences, Department of Plant Biochemistry, D-37077 Goettingen, Germany
- University of Goettingen, Goettingen Center for Molecular Biosciences (GZMB), Service Unit for Metabolomics and Lipidomics, D-37077 Goettingen, Germany
| | - Yuelin Zhang
- University of British Columbia, Department of Botany, V6T 1Z4 Vancouver (BC), Canada
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17
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Wang Z, Yang L, Jander G, Bhawal R, Zhang S, Liu Z, Oakley A, Hua J. AIG2A and AIG2B limit the activation of salicylic acid-regulated defenses by tryptophan-derived secondary metabolism in Arabidopsis. THE PLANT CELL 2022; 34:4641-4660. [PMID: 35972413 PMCID: PMC9614473 DOI: 10.1093/plcell/koac255] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/02/2022] [Accepted: 08/11/2022] [Indexed: 05/04/2023]
Abstract
Chemical defense systems involving tryptophan-derived secondary metabolites (TDSMs) and salicylic acid (SA) are induced by general nonself signals and pathogen signals, respectively, in Arabidopsis thaliana. Whether and how these chemical defense systems are connected and balanced is largely unknown. In this study, we identified the AVRRPT2-INDUCED GENE2A (AIG2A) and AIG2B genes as gatekeepers that prevent activation of SA defense systems by TDSMs. These genes also were identified as important contributors to natural variation in disease resistance among A. thaliana natural accessions. The loss of AIG2A and AIG2B function leads to upregulation of both SA and TDSM defense systems. Suppressor screens and genetic analysis revealed that a functional TDSM system is required for the upregulation of the SA pathway in the absence of AIG2A and AIG2B, but not vice versa. Furthermore, the AIG2A and AIG2B genes are co-induced with TDSM biosynthesis genes by general pathogen elicitors and nonself signals, thereby functioning as a feedback control of the TDSM defense system, as well as limiting activation of the SA defense system by TDSMs. Thus, this study uncovers an AIG2A- and AIG2B-mediated mechanism that fine-tunes and balances SA and TDSM chemical defense systems in response to nonpathogenic and pathogenic microbes.
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Affiliation(s)
- Zhixue Wang
- Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, New York 14853, USA
| | - Leiyun Yang
- Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, New York 14853, USA
| | - Georg Jander
- Boyce Thompson Institute, Ithaca, New York 14853, USA
| | - Ruchika Bhawal
- Proteomics and Metabolomics Facility, Cornell University, New York 14853, USA
| | - Sheng Zhang
- Proteomics and Metabolomics Facility, Cornell University, New York 14853, USA
| | - Zhenhua Liu
- Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, New York 14853, USA
| | - Aaron Oakley
- Molecular Horizons and School of Chemistry and Molecular Bioscience, University of Wollongong, New South Wales 2522, Australia
| | - Jian Hua
- Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, New York 14853, USA
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18
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Le Boulch P, Poëssel JL, Roux D, Lugan R. Molecular mechanisms of resistance to Myzus persicae conferred by the peach Rm2 gene: A multi-omics view. FRONTIERS IN PLANT SCIENCE 2022; 13:992544. [PMID: 36275570 PMCID: PMC9581297 DOI: 10.3389/fpls.2022.992544] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/12/2022] [Accepted: 09/08/2022] [Indexed: 06/16/2023]
Abstract
The transcriptomic and metabolomic responses of peach to Myzus persicae infestation were studied in Rubira, an accession carrying the major resistance gene Rm2 causing antixenosis, and GF305, a susceptible accession. Transcriptome and metabolome showed both a massive reconfiguration in Rubira 48 hours after infestation while GF305 displayed very limited changes. The Rubira immune system was massively stimulated, with simultaneous activation of genes encoding cell surface receptors involved in pattern-triggered immunity and cytoplasmic NLRs (nucleotide-binding domain, leucine-rich repeat containing proteins) involved in effector-triggered immunity. Hypersensitive reaction featured by necrotic lesions surrounding stylet punctures was supported by the induction of cell death stimulating NLRs/helpers couples, as well as the activation of H2O2-generating metabolic pathways: photorespiratory glyoxylate synthesis and activation of the futile P5C/proline cycle. The triggering of systemic acquired resistance was suggested by the activation of pipecolate pathway and accumulation of this defense hormone together with salicylate. Important reduction in carbon, nitrogen and sulphur metabolic pools and the repression of many genes related to cell division and growth, consistent with reduced apices elongation, suggested a decline in the nutritional value of apices. Finally, the accumulation of caffeic acid conjugates pointed toward their contribution as deterrent and/or toxic compounds in the mechanisms of resistance.
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Affiliation(s)
| | | | - David Roux
- UMR Qualisud, Avignon Université, Avignon, France
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19
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Cai J, Aharoni A. Amino acids and their derivatives mediating defense priming and growth tradeoff. CURRENT OPINION IN PLANT BIOLOGY 2022; 69:102288. [PMID: 35987012 DOI: 10.1016/j.pbi.2022.102288] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/08/2022] [Revised: 07/01/2022] [Accepted: 07/18/2022] [Indexed: 06/15/2023]
Abstract
Plant response to pathogens attacks generally comes at the expense of growth. Defense priming is widely accepted as an efficient strategy used for augmenting resistance with reduced fitness in terms of growth and yield. Plant-derived small molecules, both primary as well as secondary metabolites, can function as activators to prime plant defense. Amino acids and their derivatives regulate numerous aspects of plant growth and development, and biotic and abiotic stress responses. In this review, we discuss the recent progress in understanding the roles of amino acids and related molecules in defense priming and their link with plant growth. We also highlight some of the outstanding questions and provide an outlook on the prospects of 'engineering' the tradeoff between defense and growth in plants.
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Affiliation(s)
- Jianghua Cai
- Department of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot 7610001, Israel
| | - Asaph Aharoni
- Department of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot 7610001, Israel.
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20
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Yu K, Yang W, Zhao B, Wang L, Zhang P, Ouyang Y, Chang Y, Chen G, Zhang J, Wang S, Wang X, Wang P, Wang W, Roberts JA, Jiang K, Mur LAJ, Zhang X. The Kelch-F-box protein SMALL AND GLOSSY LEAVES 1 (SAGL1) negatively influences salicylic acid biosynthesis in Arabidopsis thaliana by promoting the turn-over of transcription factor SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1). THE NEW PHYTOLOGIST 2022; 235:885-897. [PMID: 35491444 DOI: 10.1111/nph.18197] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2022] [Accepted: 04/25/2022] [Indexed: 06/14/2023]
Abstract
Salicylic acid (SA) is a key phytohormone regulating plant immunity. Although the transcriptional regulation of SA biosynthesis has been well-studied, its post-translational regulation is largely unknown. We report that a Kelch repeats-containing F-box (KFB) protein, SMALL AND GLOSSY LEAVES 1 (SAGL1), negatively influences SA biosynthesis in Arabidopsis thaliana by mediating the proteolytic turnover of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1), a master transcription factor that directly drives SA biosynthesis during immunity. Loss of SAGL1 resulted in characteristic growth inhibition. Combining metabolomic, transcriptional and phenotypic analyses, we found that SAGL1 represses SA biosynthesis and SA-mediated immune activation. Genetic crosses to mutants that are deficient in SA biosynthesis blocked the SA overaccumulation in sagl1 and rescued its growth. Biochemical and proteomic analysis identified that SAGL1 interacts with SARD1 and promotes the degradation of SARD1 in a proteasome-dependent manner. These results unravelled a critical role of KFB protein SAGL1 in maintaining SA homeostasis via controlling SARD1 stability.
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Affiliation(s)
- Ke Yu
- State Key Laboratory of Crop Stress Adaptation and Improvement, Henan Joint International Laboratory for Crop Multi-Omics Research, School of Life Sciences, Henan University, Jinming Road, Kaifeng, 475004, China
| | - Wenqi Yang
- State Key Laboratory of Crop Stress Adaptation and Improvement, Henan Joint International Laboratory for Crop Multi-Omics Research, School of Life Sciences, Henan University, Jinming Road, Kaifeng, 475004, China
| | - Bing Zhao
- State Key Laboratory of Crop Stress Adaptation and Improvement, Henan Joint International Laboratory for Crop Multi-Omics Research, School of Life Sciences, Henan University, Jinming Road, Kaifeng, 475004, China
| | - Ling Wang
- State Key Laboratory of Crop Stress Adaptation and Improvement, Henan Joint International Laboratory for Crop Multi-Omics Research, School of Life Sciences, Henan University, Jinming Road, Kaifeng, 475004, China
| | - Pan Zhang
- State Key Laboratory of Crop Stress Adaptation and Improvement, Henan Joint International Laboratory for Crop Multi-Omics Research, School of Life Sciences, Henan University, Jinming Road, Kaifeng, 475004, China
| | - Yi Ouyang
- State Key Laboratory of Crop Stress Adaptation and Improvement, Henan Joint International Laboratory for Crop Multi-Omics Research, School of Life Sciences, Henan University, Jinming Road, Kaifeng, 475004, China
| | - Yuankai Chang
- School of Life Sciences, Henan University, Jinming Road, Kaifeng, 475004, China
| | - Guoqingzi Chen
- College of Life Sciences, Zhejiang University, Yuhangtang Road, Hangzhou, 310058, China
| | - Junli Zhang
- State Key Laboratory of Crop Stress Adaptation and Improvement, Henan Joint International Laboratory for Crop Multi-Omics Research, School of Life Sciences, Henan University, Jinming Road, Kaifeng, 475004, China
| | - Shujie Wang
- State Key Laboratory of Crop Stress Adaptation and Improvement, Henan Joint International Laboratory for Crop Multi-Omics Research, School of Life Sciences, Henan University, Jinming Road, Kaifeng, 475004, China
| | - Xiao Wang
- State Key Laboratory of Crop Stress Adaptation and Improvement, Henan Joint International Laboratory for Crop Multi-Omics Research, School of Life Sciences, Henan University, Jinming Road, Kaifeng, 475004, China
| | - Panpan Wang
- State Key Laboratory of Crop Stress Adaptation and Improvement, Henan Joint International Laboratory for Crop Multi-Omics Research, School of Life Sciences, Henan University, Jinming Road, Kaifeng, 475004, China
| | - Wei Wang
- State Key Laboratory of Crop Stress Adaptation and Improvement, Henan Joint International Laboratory for Crop Multi-Omics Research, School of Life Sciences, Henan University, Jinming Road, Kaifeng, 475004, China
| | - Jeremy A Roberts
- Faculty of Science and Engineering, School of Biological & Marine Sciences, University of Plymouth, PL4 8AA, UK
| | - Kun Jiang
- College of Life Sciences, Zhejiang University, Yuhangtang Road, Hangzhou, 310058, China
| | - Luis A J Mur
- Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, Aberystwyth, SY23 3FL, UK
| | - Xuebin Zhang
- State Key Laboratory of Crop Stress Adaptation and Improvement, Henan Joint International Laboratory for Crop Multi-Omics Research, School of Life Sciences, Henan University, Jinming Road, Kaifeng, 475004, China
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21
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Moormann J, Heinemann B, Hildebrandt TM. News about amino acid metabolism in plant-microbe interactions. Trends Biochem Sci 2022; 47:839-850. [PMID: 35927139 DOI: 10.1016/j.tibs.2022.07.001] [Citation(s) in RCA: 26] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2022] [Revised: 06/17/2022] [Accepted: 07/06/2022] [Indexed: 01/17/2023]
Abstract
Plants constantly come into contact with a diverse mix of pathogenic and beneficial microbes. The ability to distinguish between them and to respond appropriately is essential for plant health. Here we review recent progress in understanding the role of amino acid sensing, signaling, transport, and metabolism during plant-microbe interactions. Biochemical pathways converting individual amino acids into active compounds have recently been elucidated, and comprehensive large-scale approaches have brought amino acid sensors and transporters into focus. These findings show that plant central amino acid metabolism is closely interwoven with stress signaling and defense responses at various levels. The individual biochemical mechanisms and the interconnections between the different processes are just beginning to emerge and might serve as a foundation for new plant protection strategies.
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Affiliation(s)
- Jannis Moormann
- Institute for Plant Genetics, Department of Plant Proteomics, Leibniz University Hannover, Herrenhäuser Straße 2, 30419 Hannover, Germany
| | - Björn Heinemann
- Institute for Plant Genetics, Department of Plant Proteomics, Leibniz University Hannover, Herrenhäuser Straße 2, 30419 Hannover, Germany
| | - Tatjana M Hildebrandt
- Institute for Plant Sciences, Cluster of Excellence on Plant Sciences (CEPLAS), University of Cologne, Zülpicher Straße 47a, 50674 Cologne, Germany.
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22
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Kiekens R, de Koning R, Toili MEM, Angenon G. The Hidden Potential of High-Throughput RNA-Seq Re-Analysis, a Case Study for DHDPS, Key Enzyme of the Aspartate-Derived Lysine Biosynthesis Pathway and Its Role in Abiotic and Biotic Stress Responses in Soybean. PLANTS 2022; 11:plants11131762. [PMID: 35807714 PMCID: PMC9269547 DOI: 10.3390/plants11131762] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/17/2022] [Revised: 06/15/2022] [Accepted: 06/22/2022] [Indexed: 11/16/2022]
Abstract
DHDPS is a key enzyme in the aspartate-derived lysine biosynthesis pathway and an evident object of study for biofortification strategies in plants. DHDPS isoforms with novel regulatory properties in Medicago truncatula were demonstrated earlier and hypothesized to be involved in abiotic and biotic stress responses. Here, we present a phylogenetic analysis of the DHPDS gene family in land plants which establishes the existence of a legume-specific class of DHDPS, termed DHDPS B-type, distinguishable from the DHDPS A-type commonly present in all land plants. The G. max genome comprises two A-type DHDPS genes (Gm.DHDPS-A1; Glyma.09G268200, Gm.DHDPS-A2; Glyma.18G221700) and one B-type (Gm.DHDPS-B; Glyma.03G022300). To further investigate the expression pattern of the G. max DHDPS isozymes in different plant tissues and under various stress conditions, 461 RNA-seq experiments were exploited and re-analyzed covering two expression atlases, 13 abiotic and 5 biotic stress studies. Gm.DHDPS-B is seen almost exclusively expressed in roots and nodules in addition to old cotyledons or senescent leaves while both DHDPS A-types are expressed constitutively in all tissues analyzed with the highest expression in mature seeds. Furthermore, Gm.DHDPS-B expression is significantly upregulated in some but not all stress responses including salt stress, flooding, ethylene or infection with Phytophthora sojae and coincides with downregulation of DHDPS A-types. In conclusion, we demonstrate the potential of an in-depth RNA-seq re-analysis for the guidance of future experiments and to expand on current knowledge.
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Affiliation(s)
- Raphaël Kiekens
- Research Group Plant Genetics, Vrije Universiteit Brussel, 1050 Brussels, Belgium; (R.K.); (R.d.K.); (M.E.M.T.)
| | - Ramon de Koning
- Research Group Plant Genetics, Vrije Universiteit Brussel, 1050 Brussels, Belgium; (R.K.); (R.d.K.); (M.E.M.T.)
| | - Mary Esther Muyoka Toili
- Research Group Plant Genetics, Vrije Universiteit Brussel, 1050 Brussels, Belgium; (R.K.); (R.d.K.); (M.E.M.T.)
- Department of Horticulture and Food Security, School of Agriculture and Environmental Sciences, College of Agriculture and Natural Resources, Jomo Kenyatta University of Agriculture and Technology, Nairobi P.O. Box 62000-00200, Kenya
| | - Geert Angenon
- Research Group Plant Genetics, Vrije Universiteit Brussel, 1050 Brussels, Belgium; (R.K.); (R.d.K.); (M.E.M.T.)
- Correspondence: ; Tel.: +32-2-629-1935
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23
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Roles of AGD2a in Plant Development and Microbial Interactions of Lotus japonicus. Int J Mol Sci 2022; 23:ijms23126863. [PMID: 35743304 PMCID: PMC9224730 DOI: 10.3390/ijms23126863] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2022] [Revised: 06/15/2022] [Accepted: 06/16/2022] [Indexed: 11/16/2022] Open
Abstract
Arabidopsis AGD2 (Aberrant Growth and Death2) and its close homolog ALD1 (AGD2-like defense response protein 1) have divergent roles in plant defense. We previously reported that modulation of salicylic acid (SA) contents by ALD1 affects numbers of nodules produced by Lotus japonicus, but AGD2's role in leguminous plants remains unclear. A combination of enzymatic analysis and biological characterization of genetic materials was used to study the function of AGD2 (LjAGD2a and LjAGD2b) in L. japonicus. Both LjAGD2a and LjAGD2b could complement dapD and dapE mutants of Escherichia coli and had aminotransferase activity in vitro. ljagd2 plants, with insertional mutations of LjAGD2, had delayed flowering times and reduced seed weights. In contrast, overexpression of LjAGD2a in L. japonicus induced early flowering, with increases in seed and flower sizes, but reductions in pollen fertility and seed setting rates. Additionally, ljagd2a mutation resulted in increased expression of nodulin genes and corresponding increases in infection threads and nodule numbers following inoculation with Rhizobium. Changes in expression of LjAGD2a in L. japonicus also affected endogenous SA contents and hence resistance to pathogens. Our results indicate that LjAGD2a functions as an LL-DAP aminotransferase and plays important roles in plant development. Moreover, LjAGD2a activates defense signaling via the Lys synthesis pathway, thereby participating in legume-microbe interaction.
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24
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Koper K, Han SW, Pastor DC, Yoshikuni Y, Maeda HA. Evolutionary Origin and Functional Diversification of Aminotransferases. J Biol Chem 2022; 298:102122. [PMID: 35697072 PMCID: PMC9309667 DOI: 10.1016/j.jbc.2022.102122] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2022] [Revised: 06/06/2022] [Accepted: 06/07/2022] [Indexed: 11/30/2022] Open
Abstract
Aminotransferases (ATs) are pyridoxal 5′-phosphate–dependent enzymes that catalyze the transamination reactions between amino acid donor and keto acid acceptor substrates. Modern AT enzymes constitute ∼2% of all classified enzymatic activities, play central roles in nitrogen metabolism, and generate multitude of primary and secondary metabolites. ATs likely diverged into four distinct AT classes before the appearance of the last universal common ancestor and further expanded to a large and diverse enzyme family. Although the AT family underwent an extensive functional specialization, many AT enzymes retained considerable substrate promiscuity and multifunctionality because of their inherent mechanistic, structural, and functional constraints. This review summarizes the evolutionary history, diverse metabolic roles, reaction mechanisms, and structure–function relationships of the AT family enzymes, with a special emphasis on their substrate promiscuity and multifunctionality. Comprehensive characterization of AT substrate specificity is still needed to reveal their true metabolic functions in interconnecting various branches of the nitrogen metabolic network in different organisms.
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Affiliation(s)
- Kaan Koper
- Department of Botany, University of Wisconsin-Madison, Madison, WI, 53706, USA
| | - Sang-Woo Han
- The US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
| | | | - Yasuo Yoshikuni
- The US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; Global Center for Food, Land, and Water Resources, Research Faculty of Agriculture, Hokkaido University, Hokkaido 060-8589, Japan
| | - Hiroshi A Maeda
- Department of Botany, University of Wisconsin-Madison, Madison, WI, 53706, USA
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25
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New molecules in plant defence against pathogens. Essays Biochem 2022; 66:683-693. [PMID: 35642866 DOI: 10.1042/ebc20210076] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2022] [Revised: 04/14/2022] [Accepted: 05/09/2022] [Indexed: 12/12/2022]
Abstract
Plants host a multipart immune signalling network to ward off pathogens. Pathogen attack upon plant tissues can often lead to an amplified state of (induced) defence against subsequent infections in distal tissues; this is known as systemic acquired resistance (SAR). The interaction of plants with beneficial microbes of the rhizosphere microbiome can also lead to an induced resistance in above-ground plant tissues, known as induced systemic resistance. Second messengers such as calcium (Ca2+), reactive oxygen species (ROS), and nitric oxide (NO) are necessary for cell-to-cell signal propagation during SAR and show emergent roles in the mediation of other SAR metabolites. These include the lysine-derived signals pipecolic acid (Pip) and N-hydroxypipecolic acid (NHP), which are key signalling metabolites in SAR. Emerging evidence additionally pinpoints plant volatiles as modulators of defence signalling within and between plants. Plant volatile organic compounds (VOCs) such as monoterpenes can promote SAR by functioning through ROS. Furthermore, plant-derived and additionally also microbial VOCs can target both salicylic acid and jasmonic acid signalling pathways in plants and modulate defence against pathogens. In this review, an overview of recent findings in induced defence signalling, with a particular focus on newer signalling molecules and how they integrate into these networks is discussed.
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26
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Krawczyk HE, Rotsch AH, Herrfurth C, Scholz P, Shomroni O, Salinas-Riester G, Feussner I, Ischebeck T. Heat stress leads to rapid lipid remodeling and transcriptional adaptations in Nicotiana tabacum pollen tubes. PLANT PHYSIOLOGY 2022; 189:490-515. [PMID: 35302599 PMCID: PMC9157110 DOI: 10.1093/plphys/kiac127] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2021] [Accepted: 02/19/2022] [Indexed: 06/12/2023]
Abstract
After reaching the stigma, pollen grains germinate and form a pollen tube that transports the sperm cells to the ovule. Due to selection pressure between pollen tubes, pollen grains likely evolved mechanisms to quickly adapt to temperature changes to sustain elongation at the highest possible rate. We investigated these adaptions in tobacco (Nicotiana tabacum) pollen tubes grown in vitro under 22°C and 37°C by a multi-omics approach including lipidomic, metabolomic, and transcriptomic analysis. Both glycerophospholipids and galactoglycerolipids increased in saturated acyl chains under heat stress (HS), while triacylglycerols (TGs) changed less in respect to desaturation but increased in abundance. Free sterol composition was altered, and sterol ester levels decreased. The levels of sterylglycosides and several sphingolipid classes and species were augmented. Most amino acid levels increased during HS, including the noncodogenic amino acids γ-amino butyrate and pipecolate. Furthermore, the sugars sedoheptulose and sucrose showed higher levels. Also, the transcriptome underwent pronounced changes with 1,570 of 24,013 genes being differentially upregulated and 813 being downregulated. Transcripts coding for heat shock proteins and many transcriptional regulators were most strongly upregulated but also transcripts that have so far not been linked to HS. Transcripts involved in TG synthesis increased, while the modulation of acyl chain desaturation seemed not to be transcriptionally controlled, indicating other means of regulation. In conclusion, we show that tobacco pollen tubes are able to rapidly remodel their lipidome under HS likely by post-transcriptional and/or post-translational regulation.
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Affiliation(s)
- Hannah Elisa Krawczyk
- Department of Plant Biochemistry, Albrecht-von-Haller-Institute for Plant Sciences and Göttingen Center for Molecular Biosciences (GZMB), University of Göttingen, Göttingen 37077, Germany
| | - Alexander Helmut Rotsch
- Department of Plant Biochemistry, Albrecht-von-Haller-Institute for Plant Sciences and Göttingen Center for Molecular Biosciences (GZMB), University of Göttingen, Göttingen 37077, Germany
| | - Cornelia Herrfurth
- Department of Plant Biochemistry, Albrecht-von-Haller-Institute for Plant Sciences and Göttingen Center for Molecular Biosciences (GZMB), University of Göttingen, Göttingen 37077, Germany
- Service Unit for Metabolomics and Lipidomics, Göttingen Center for Molecular Biosciences (GZMB), University of Göttingen, Göttingen 37077, Germany
| | - Patricia Scholz
- Department of Plant Biochemistry, Albrecht-von-Haller-Institute for Plant Sciences and Göttingen Center for Molecular Biosciences (GZMB), University of Göttingen, Göttingen 37077, Germany
| | - Orr Shomroni
- NGS—Integrative Genomics Core Unit (NIG), University Medical Center Göttingen (UMG), Institute of Human Genetics, Göttingen 37077, Germany
| | - Gabriela Salinas-Riester
- NGS—Integrative Genomics Core Unit (NIG), University Medical Center Göttingen (UMG), Institute of Human Genetics, Göttingen 37077, Germany
| | - Ivo Feussner
- Department of Plant Biochemistry, Albrecht-von-Haller-Institute for Plant Sciences and Göttingen Center for Molecular Biosciences (GZMB), University of Göttingen, Göttingen 37077, Germany
- Service Unit for Metabolomics and Lipidomics, Göttingen Center for Molecular Biosciences (GZMB), University of Göttingen, Göttingen 37077, Germany
| | - Till Ischebeck
- Department of Plant Biochemistry, Albrecht-von-Haller-Institute for Plant Sciences and Göttingen Center for Molecular Biosciences (GZMB), University of Göttingen, Göttingen 37077, Germany
- Institute of Plant Biology and Biotechnology (IBBP), University of Münster, Green Biotechnology, Münster 48143, Germany
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27
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Huang X, Liu Y, Huang J, Fernando WGD, Li X, Xia S. Activation of NLR-Mediated Autoimmunity in Arabidopsis Early in Short Days 4 Mutant. FRONTIERS IN PLANT SCIENCE 2022; 13:881212. [PMID: 35693184 PMCID: PMC9174647 DOI: 10.3389/fpls.2022.881212] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/22/2022] [Accepted: 05/04/2022] [Indexed: 06/15/2023]
Abstract
From a reverse genetic screen using CRISPR/Cas9 gene editing tool, we unintentionally identified an autoimmune mutant. Map-based cloning and whole-genome sequencing revealed that it contains a deletion in SMALL UBIQUITIN-RELATED MODIFIER (SUMO) protease encoding gene EARLY IN SHORT DAYS 4 (ESD4). Previous studies reported that esd4 mutants accumulate elevated levels of plant defense hormone salicylic acid (SA). However, upregulated PATHOGENESIS-RELATED GENE 1 (PR1) expression in esd4 only partly relies on SA level. In this study, we show that plant metabolite N-hydroxypipecolic acid (NHP) biosynthetic genes are upregulated in esd4, and NHP biosynthesis mutant flavin-dependent-monooxygenase 1 (fmo1) partially suppresses the autoimmune phenotypes of esd4, suggestive of a requirement of NHP signaling for the autoimmunity in esd4. As activation of nucleotide-binding leucine-rich repeat immune receptors (NLRs) are associates with the biosynthesis of SA and NHP and lipase-like protein ENHANCED DISEASE SUSCEPTIBILITY 1 (EDS1) is a key component downstream of many NLRs, we examined the relationship between EDS1 and ESD4 by analyzing the eds1 esd4 double mutant. We found that eds1 largely suppresses esd4 autoimmunity and blocks the elevated expressions of SA and NHP biosynthesis-related genes in esd4. Overall, our study provides evidence supporting the hypothesis that SUMO protease ESD4 likely targets a yet to be identified guardee of NLR by removing its SUMO modification to avoid recognition by the cognate NLR. Loss of ESD4 results in activation of NLR-mediated autoimmunity.
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Affiliation(s)
- Xingchuan Huang
- Hunan Provincial Key Laboratory of Phytohormones and Growth Development, College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha, China
- Michael Smith Laboratories, University of British Columbia, Vancouver, BC, Canada
| | - Yanan Liu
- Hunan Provincial Key Laboratory of Phytohormones and Growth Development, College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha, China
| | - Jianhua Huang
- Michael Smith Laboratories, University of British Columbia, Vancouver, BC, Canada
- Department of Botany, University of British Columbia, Vancouver, BC, Canada
| | | | - Xin Li
- Michael Smith Laboratories, University of British Columbia, Vancouver, BC, Canada
- Department of Botany, University of British Columbia, Vancouver, BC, Canada
| | - Shitou Xia
- Hunan Provincial Key Laboratory of Phytohormones and Growth Development, College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha, China
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28
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Protein glycosylation changes during systemic acquired resistance in Arabidopsis thaliana. Int J Biol Macromol 2022; 212:381-392. [PMID: 35623457 DOI: 10.1016/j.ijbiomac.2022.05.126] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2022] [Revised: 05/08/2022] [Accepted: 05/17/2022] [Indexed: 01/01/2023]
Abstract
N-glycosylation, an important post-translational modification of proteins in all eukaryotes, has been clearly shown to be involved in numerous diseases in mammalian systems. In contrast, little is known regarding the role of protein N-glycosylation in plant defensive responses to pathogen infection. We identified, for the first time, glycoproteins related to systemic acquired resistance (SAR) in an Arabidopsis thaliana model, using a glycoproteomics platform based on high-resolution mass spectrometry. 407 glycosylation sites corresponding to 378 glycopeptides and 273 unique glycoproteins were identified. 65 significantly changed glycoproteins with 80 N-glycosylation sites were detected in systemic leaves of SAR-induced plants, including numerous GDSL-like lipases, thioglucoside glucohydrolases, kinases, and glycosidases. Functional enrichment analysis revealed that significantly changed glycoproteins were involved mainly in N-glycan biosynthesis and degradation, phenylpropanoid biosynthesis, cutin and wax biosynthesis, and plant-pathogen interactions. Comparative analysis of glycoproteomics and proteomics data indicated that glycoproteomics analysis is an efficient method for screening proteins associated with SAR. The present findings clarify glycosylation status and sites of A. thaliana proteins, and will facilitate further research on roles of glycoproteins in SAR induction.
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29
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Luo Z, Wang Z, Wang B, Lu Y, Yan L, Zhao Z, Bai T, Zhang J, Li H, Wang W, Cheng J. An Artificial Pathway for N-Hydroxy-Pipecolic Acid Production From L-Lysine in Escherichia coli. Front Microbiol 2022; 13:842804. [PMID: 35350620 PMCID: PMC8957990 DOI: 10.3389/fmicb.2022.842804] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2021] [Accepted: 01/26/2022] [Indexed: 11/30/2022] Open
Abstract
N-hydroxy-pipecolic acid (NHP) is a hydroxylated product of pipecolic acid and an important systemic acquired resistance signal molecule. However, the biosynthesis of NHP does not have a natural metabolic pathway in microorganisms. Here, we designed and constructed a promising artificial pathway in Escherichia coli for the first time to produce NHP from biomass-derived lysine. This biosynthesis route expands the lysine catabolism pathway and employs six enzymes to sequentially convert lysine into NHP. This artificial route involves six functional enzyme coexpression: lysine α-oxidase from Scomber japonicus (RaiP), glucose dehydrogenase from Bacillus subtilis (GDH), Δ1-piperideine-2-carboxylase reductase from Pseudomonas putida (DpkA), lysine permease from E. coli (LysP), flavin-dependent monooxygenase (FMO1), and catalase from E. coli (KatE). Moreover, different FMO1s are used to evaluate the performance of the produce NHP. A titer of 111.06 mg/L of NHP was yielded in shake flasks with minimal medium containing 4 g/L of lysine. By this approach, NHP has so far been produced at final titers reaching 326.42 mg/L by 48 h in a 5-L bioreactor. To the best of our knowledge, this is the first NHP process using E. coli and the first process to directly synthesize NHP by microorganisms. This study lays the foundation for the development and utilization of renewable resources to produce NHP in microorganisms.
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Affiliation(s)
- Zhou Luo
- Meat Processing Key Laboratory of Sichuan Province, College of Food and Biological Engineering, Chengdu University, Chengdu, China
| | - Zhen Wang
- College of Science and Technology, Hebei Agricultural University, Cangzhou, China
| | - Bangxu Wang
- Meat Processing Key Laboratory of Sichuan Province, College of Food and Biological Engineering, Chengdu University, Chengdu, China
| | - Yao Lu
- College of Biological and Chemical Engineering, Guangxi University of Science and Technology, Liuzhou, China
| | - Lixiu Yan
- Chongqing Academy of Metrology and Quality Inspection, Chongqing, China
| | - Zhiping Zhao
- Meat Processing Key Laboratory of Sichuan Province, College of Food and Biological Engineering, Chengdu University, Chengdu, China
| | - Ting Bai
- Meat Processing Key Laboratory of Sichuan Province, College of Food and Biological Engineering, Chengdu University, Chengdu, China
| | - Jiamin Zhang
- Meat Processing Key Laboratory of Sichuan Province, College of Food and Biological Engineering, Chengdu University, Chengdu, China
| | - Hanmei Li
- Meat Processing Key Laboratory of Sichuan Province, College of Food and Biological Engineering, Chengdu University, Chengdu, China
| | - Wei Wang
- Meat Processing Key Laboratory of Sichuan Province, College of Food and Biological Engineering, Chengdu University, Chengdu, China
| | - Jie Cheng
- Meat Processing Key Laboratory of Sichuan Province, College of Food and Biological Engineering, Chengdu University, Chengdu, China
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30
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Ngou BPM, Jones JDG, Ding P. Plant immune networks. TRENDS IN PLANT SCIENCE 2022; 27:255-273. [PMID: 34548213 DOI: 10.1016/j.tplants.2021.08.012] [Citation(s) in RCA: 126] [Impact Index Per Article: 63.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/02/2021] [Revised: 08/14/2021] [Accepted: 08/26/2021] [Indexed: 05/06/2023]
Abstract
Plants have both cell-surface and intracellular receptors to recognize diverse self- and non-self molecules. Cell-surface pattern recognition receptors (PRRs) recognize extracellular pathogen-/damage-derived molecules or apoplastic pathogen-derived effectors. Intracellular nucleotide-binding leucine-rich repeat proteins (NLRs) recognize pathogen effectors. Activation of both PRRs and NLRs elevates defense gene expression and accumulation of the phytohormone salicylic acid (SA), which results in SA-dependent transcriptional reprogramming. These receptors, together with their coreceptors, form networks to mediate downstream immune responses. In addition, cell-surface and intracellular immune systems are interdependent and function synergistically to provide robust resistance against pathogens. Here, we summarize the interactions between these immune systems and attempt to provide a holistic picture of plant immune networks. We highlight current challenges and discuss potential new research directions.
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Affiliation(s)
- Bruno Pok Man Ngou
- The Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich NR4 7UH, UK.
| | - Jonathan D G Jones
- The Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich NR4 7UH, UK.
| | - Pingtao Ding
- The Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich NR4 7UH, UK; Institute of Biology Leiden, Leiden University, Sylviusweg 72, Leiden 2333, BE, The Netherlands.
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Jon CS, Yang L, Wang Z, Cui M, Sun H, Wang L, Liu L, Nardiello D, Quinto M, He M, Li D. On the use of a 2D-carbon microfiber fractionation system to improve flow-injection QTOF-HRMS analysis in complex matrices: the case of Abelmoschus manihot flower extracts. Analyst 2022; 147:819-827. [PMID: 35044386 DOI: 10.1039/d1an02130c] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
A two-dimensional microscale carbon fiber/active carbon fiber system combined with a quadrupole time of flight high-resolution mass spectrometry (2DμCFs-QTOF-HRMS) system is proposed for the rapid putative identification of polar, medium-polar and weakly polar constituents in complex matrices while strongly mitigating ionic suppression effects. The capabilities of 2DμCFs-QTOF-HRMS have been proven by analysing the composition of Abelmoschus manihot flower extracts, allowing, in a single run, the detection of 41 known substances and the presence of 6 compounds never revealed before in these samples. 2DμCFs-QTOF-HRMS has been compared with traditional HPLC-MS, showing higher versatility and a significant reduction of both analysis time (70 min to 5 min) and solvent consumption (35 mL to 1.5 mL). A comparison with the results obtained by direct flow-injection MS analyses demonstrated that 2DμCFs-QTOF-HRMS leads to a more comprehensive analysis and to improved detection sensitivity. The proposed method can be considered suitable for the rapid and comprehensive analysis of food, environmental and pharmaceutical complex samples. 2DμCFs-QTOF-HRMS can thus be considered a rapid, versatile, reliable, high-throughput and economical technique that allows for the collection of information on polar, semipolar, and weakly polar components in complex matrices.
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Affiliation(s)
- Chol-San Jon
- Interdisciplinary Program of Biological Functional Molecules, College of Integration Science, Yanbian University, Park Road 977, Yanji City, Jilin Province, 133002, PR China.
| | - Lei Yang
- Interdisciplinary Program of Biological Functional Molecules, College of Integration Science, Yanbian University, Park Road 977, Yanji City, Jilin Province, 133002, PR China.
| | - Zhao Wang
- Department of Chemistry, Yanbian University, Park Road 977, Yanji City, Jilin Province, 133002, PR China
| | - Meiyu Cui
- Department of Chemistry, Yanbian University, Park Road 977, Yanji City, Jilin Province, 133002, PR China
| | - Huaze Sun
- Department of Chemistry, Yanbian University, Park Road 977, Yanji City, Jilin Province, 133002, PR China
| | - Liyuan Wang
- Department of Chemistry, Yanbian University, Park Road 977, Yanji City, Jilin Province, 133002, PR China
| | - Lu Liu
- Department of Chemistry, Yanbian University, Park Road 977, Yanji City, Jilin Province, 133002, PR China
| | - Donatella Nardiello
- Department of Agriculture, Food, Natural resource, and Engineering (DAFNE), via Napoli 25, I-71122 Foggia, Italy
| | - Maurizio Quinto
- Interdisciplinary Program of Biological Functional Molecules, College of Integration Science, Yanbian University, Park Road 977, Yanji City, Jilin Province, 133002, PR China. .,Department of Agriculture, Food, Natural resource, and Engineering (DAFNE), via Napoli 25, I-71122 Foggia, Italy
| | - Miao He
- Interdisciplinary Program of Biological Functional Molecules, College of Integration Science, Yanbian University, Park Road 977, Yanji City, Jilin Province, 133002, PR China.
| | - Donghao Li
- Interdisciplinary Program of Biological Functional Molecules, College of Integration Science, Yanbian University, Park Road 977, Yanji City, Jilin Province, 133002, PR China. .,Department of Chemistry, Yanbian University, Park Road 977, Yanji City, Jilin Province, 133002, PR China
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Zeng L, Wang JZ, He X, Ke H, Lemos M, Gray WM, Dehesh K. A plastidial retrograde signal potentiates biosynthesis of systemic stress response activators. THE NEW PHYTOLOGIST 2022; 233:1732-1749. [PMID: 34859454 PMCID: PMC8776617 DOI: 10.1111/nph.17890] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2021] [Accepted: 11/23/2021] [Indexed: 05/26/2023]
Abstract
Plants employ an array of intricate and hierarchical signaling cascades to perceive and transduce informational cues to synchronize and tailor adaptive responses. Systemic stress response (SSR) is a recognized complex signaling and response network quintessential to plant's local and distal responses to environmental triggers; however, the identity of the initiating signals has remained fragmented. Here, we show that both biotic (aphids and viral pathogens) and abiotic (high light and wounding) stresses induce accumulation of the plastidial-retrograde-signaling metabolite methylerythritol cyclodiphosphate (MEcPP), leading to reduction of the phytohormone auxin and the subsequent decreased expression of the phosphatase PP2C.D1. This enables phosphorylation of mitogen-activated protein kinases 3/6 and the consequential induction of the downstream events ultimately, resulting in biosynthesis of the two SSR priming metabolites pipecolic acid and N-hydroxy-pipecolic acid. This work identifies plastids as a major initiation site, and the plastidial retrograde signal MEcPP as an initiator of a multicomponent signaling cascade potentiating the biosynthesis of SSR activators, in response to biotic and abiotic triggers.
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Affiliation(s)
- Liping Zeng
- Institute for Integrative Genome Biology and Department of Botany and Plant Sciences, University of California, Riverside, CA 92521, USA
| | - Jin-Zheng Wang
- Institute for Integrative Genome Biology and Department of Botany and Plant Sciences, University of California, Riverside, CA 92521, USA
| | - Xiang He
- Current address: Laboratory of Allergy and Inflammation, Chengdu third people’s hospital branch of National Clinical Research Center for Respiratory Disease, Chengdu 610031, China
| | - Haiyan Ke
- Institute for Integrative Genome Biology and Department of Botany and Plant Sciences, University of California, Riverside, CA 92521, USA
| | - Mark Lemos
- Institute for Integrative Genome Biology and Department of Botany and Plant Sciences, University of California, Riverside, CA 92521, USA
| | - William M. Gray
- Department of Plant and Microbial Biology, University of Minnesota, St. Paul, MN 55108, USA
| | - Katayoon Dehesh
- Institute for Integrative Genome Biology and Department of Botany and Plant Sciences, University of California, Riverside, CA 92521, USA
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M VNUM, Faidh MA, Chadha A. The ornithine cyclodeaminase/µ-crystallin superfamily of proteins: A novel family of oxidoreductases for the biocatalytic synthesis of chiral amines. CURRENT RESEARCH IN BIOTECHNOLOGY 2022. [DOI: 10.1016/j.crbiot.2022.09.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022] Open
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Nair A, Goyal I, Voß E, Mrozek P, Prajapati S, Thurow C, Tietze L, Tittmann K, Gatz C. N-hydroxypipecolic acid-induced transcription requires the salicylic acid signaling pathway at basal SA levels. PLANT PHYSIOLOGY 2021; 187:2803-2819. [PMID: 34890459 PMCID: PMC8644824 DOI: 10.1093/plphys/kiab433] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2021] [Accepted: 08/31/2021] [Indexed: 05/04/2023]
Abstract
Systemic acquired resistance (SAR) is a plant immune response established in uninfected leaves after colonization of local leaves with biotrophic or hemibiotrophic pathogens. The amino acid-derived metabolite N-hydroxypipecolic acid (NHP) travels from infected to systemic leaves, where it activates salicylic acid (SA) biosynthesis through the isochorismate pathway. The resulting increased SA levels are essential for induction of a large set of SAR marker genes and full SAR establishment. In this study, we show that pharmacological treatment of Arabidopsis thaliana with NHP induces a subset of SAR-related genes even in the SA induction-deficient2 (sid2/isochorismate synthase1) mutant, which is devoid of NHP-induced SA. NHP-mediated induction is abolished in sid2-1 NahG plants, in which basal SA levels are degraded. The SA receptor NON-EXPRESSOR OF PATHOGENESIS-RELATED GENES1 (NPR1) and its interacting TGACG SEQUENCE-SPECIFIC BINDING PROTEIN (TGA) transcription factors are required for the NHP-mediated induction of SAR genes at resting SA levels. Isothermal titration analysis determined a KD of 7.9 ± 0.5 µM for the SA/NPR1 complex, suggesting that basal levels of SA would not bind to NPR1 unless yet unknown potentially NHP-induced processes increase the affinity. Moreover, the nucleocytoplasmic protein PHYTOALEXIN DEFICIENT4 is required for a slight NHP-mediated increase in NPR1 protein levels and NHP-induced expression of SAR-related genes. Our experiments have unraveled that NHP requires basal SA and components of the SA signaling pathway to induce SAR genes. Still, the mechanism of NHP perception remains enigmatic.
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Affiliation(s)
- Aswin Nair
- Department of Plant Molecular Biology and Physiology, Albrecht-von-Haller Institute for Plant Sciences, Georg-August University Göttingen, Julia-Lermontowa-Weg 3, 37077 Göttingen, Germany
| | - Isha Goyal
- Department of Plant Molecular Biology and Physiology, Albrecht-von-Haller Institute for Plant Sciences, Georg-August University Göttingen, Julia-Lermontowa-Weg 3, 37077 Göttingen, Germany
| | - Edgar Voß
- Institute of Organic and Biomolecular Chemistry, Georg-August University Göttingen, Tammannstr. 2, 37077 Göttingen, Germany
| | - Pascal Mrozek
- Department of Plant Molecular Biology and Physiology, Albrecht-von-Haller Institute for Plant Sciences, Georg-August University Göttingen, Julia-Lermontowa-Weg 3, 37077 Göttingen, Germany
| | - Sabin Prajapati
- Department of Molecular Enzymology, Göttingen Centre for Molecular Biosciences and Albrecht-von-Haller Institute, Georg-August University Göttingen, Julia-Lermontowa-Weg 3, 37077 Göttingen, Germany
- Department of Structural Dynamics, Max-Planck-Institute for Biophysical Chemistry, Am Faßberg 11, 37077 Göttingen, Germany
| | - Corinna Thurow
- Department of Plant Molecular Biology and Physiology, Albrecht-von-Haller Institute for Plant Sciences, Georg-August University Göttingen, Julia-Lermontowa-Weg 3, 37077 Göttingen, Germany
| | - Lutz Tietze
- Institute of Organic and Biomolecular Chemistry, Georg-August University Göttingen, Tammannstr. 2, 37077 Göttingen, Germany
| | - Kai Tittmann
- Department of Molecular Enzymology, Göttingen Centre for Molecular Biosciences and Albrecht-von-Haller Institute, Georg-August University Göttingen, Julia-Lermontowa-Weg 3, 37077 Göttingen, Germany
- Department of Structural Dynamics, Max-Planck-Institute for Biophysical Chemistry, Am Faßberg 11, 37077 Göttingen, Germany
| | - Christiane Gatz
- Department of Plant Molecular Biology and Physiology, Albrecht-von-Haller Institute for Plant Sciences, Georg-August University Göttingen, Julia-Lermontowa-Weg 3, 37077 Göttingen, Germany
- Author for communication:
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Ding P, Sakai T, Krishna Shrestha R, Manosalva Perez N, Guo W, Ngou BPM, He S, Liu C, Feng X, Zhang R, Vandepoele K, MacLean D, Jones JDG. Chromatin accessibility landscapes activated by cell-surface and intracellular immune receptors. JOURNAL OF EXPERIMENTAL BOTANY 2021; 72:7927-7941. [PMID: 34387350 DOI: 10.1093/jxb/erab373] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2020] [Accepted: 08/12/2021] [Indexed: 06/13/2023]
Abstract
Activation of cell-surface and intracellular receptor-mediated immunity results in rapid transcriptional reprogramming that underpins disease resistance. However, the mechanisms by which co-activation of both immune systems lead to transcriptional changes are not clear. Here, we combine RNA-seq and ATAC-seq to define changes in gene expression and chromatin accessibility. Activation of cell-surface or intracellular receptor-mediated immunity, or both, increases chromatin accessibility at induced defence genes. Analysis of ATAC-seq and RNA-seq data combined with publicly available information on transcription factor DNA-binding motifs enabled comparison of individual gene regulatory networks activated by cell-surface or intracellular receptor-mediated immunity, or by both. These results and analyses reveal overlapping and conserved transcriptional regulatory mechanisms between the two immune systems.
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Affiliation(s)
- Pingtao Ding
- The Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich NR4 7UH, UK
- Institute of Biology Leiden, Leiden University, Sylviusweg 72, Leiden 2333 BE, The Netherlands
| | - Toshiyuki Sakai
- The Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich NR4 7UH, UK
| | - Ram Krishna Shrestha
- The Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich NR4 7UH, UK
| | - Nicolas Manosalva Perez
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052 Ghent, Belgium
- VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium
| | - Wenbin Guo
- Information and Computational Sciences, The James Hutton Institute, Dundee DD2 5DA, UK
| | - Bruno Pok Man Ngou
- The Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich NR4 7UH, UK
| | - Shengbo He
- John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK
| | - Chang Liu
- Institute of Biology, University of Hohenheim, Garbenstrasse 30, 70599 Stuttgart, Germany
| | - Xiaoqi Feng
- John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK
| | - Runxuan Zhang
- Information and Computational Sciences, The James Hutton Institute, Dundee DD2 5DA, UK
| | - Klaas Vandepoele
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052 Ghent, Belgium
- VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium
| | - Dan MacLean
- The Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich NR4 7UH, UK
| | - Jonathan D G Jones
- The Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich NR4 7UH, UK
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36
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Alfonso E, Stahl E, Glauser G, Bellani E, Raaymakers TM, Van den Ackerveken G, Zeier J, Reymond P. Insect eggs trigger systemic acquired resistance against a fungal and an oomycete pathogen. THE NEW PHYTOLOGIST 2021; 232:2491-2505. [PMID: 34510462 PMCID: PMC9292583 DOI: 10.1111/nph.17732] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2021] [Accepted: 09/05/2021] [Indexed: 05/27/2023]
Abstract
Plants are able to detect insect eggs deposited on leaves. In Arabidopsis, eggs of the butterfly species Pieris brassicae (common name large white) induce plant defenses and activate the salicylic acid (SA) pathway. We previously discovered that oviposition triggers a systemic acquired resistance (SAR) against the bacterial hemibiotroph pathogen Pseudomonas syringae. Here, we show that insect eggs or treatment with egg extract (EE) induce SAR against the fungal necrotroph Botrytis cinerea BMM and the oomycete pathogen Hyaloperonospora arabidopsidis Noco2. This response is abolished in ics1, ald1 and fmo1, indicating that the SA pathway and the N-hydroxypipecolic acid (NHP) pathway are involved. Establishment of EE-induced SAR in distal leaves potentially involves tryptophan-derived metabolites, including camalexin. Indeed, SAR is abolished in the biosynthesis mutants cyp79B2 cyp79B3, cyp71a12 cyp71a13 and pad3-1, and camalexin is toxic to B. cinerea in vitro. This study reveals an interesting mechanism by which lepidopteran eggs interfere with plant-pathogen interactions.
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Affiliation(s)
- Esteban Alfonso
- Department of Plant Molecular BiologyUniversity of LausanneLausanne1015Switzerland
| | - Elia Stahl
- Department of Plant Molecular BiologyUniversity of LausanneLausanne1015Switzerland
| | - Gaétan Glauser
- Neuchâtel Platform of Analytical ChemistryUniversity of NeuchâtelNeuchâtel2000Switzerland
| | - Etienne Bellani
- Department of Plant Molecular BiologyUniversity of LausanneLausanne1015Switzerland
| | - Tom M. Raaymakers
- Plant–Microbe InteractionsDepartment of BiologyUtrecht UniversityUtrecht3584 CHthe Netherlands
| | | | - Jürgen Zeier
- Department of BiologyHeinrich Heine UniversityUniversitätsstrasse 1DüsseldorfD‐40225Germany
| | - Philippe Reymond
- Department of Plant Molecular BiologyUniversity of LausanneLausanne1015Switzerland
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Saleem M, Fariduddin Q, Castroverde CDM. Salicylic acid: A key regulator of redox signalling and plant immunity. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2021; 168:381-397. [PMID: 34715564 DOI: 10.1016/j.plaphy.2021.10.011] [Citation(s) in RCA: 52] [Impact Index Per Article: 17.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2021] [Revised: 09/30/2021] [Accepted: 10/03/2021] [Indexed: 05/04/2023]
Abstract
In plants, the reactive oxygen species (ROS) formed during normal conditions are essential in regulating several processes, like stomatal physiology, pathogen immunity and developmental signaling. However, biotic and abiotic stresses can cause ROS over-accumulation leading to oxidative stress. Therefore, a suitable equilibrium is vital for redox homeostasis in plants, and there have been major advances in this research arena. Salicylic acid (SA) is known as a chief regulator of ROS; however, the underlying mechanisms remain largely unexplored. SA plays an important role in establishing the hypersensitive response (HR) and systemic acquired resistance (SAR). This is underpinned by a robust and complex network of SA with Non-Expressor of Pathogenesis Related protein-1 (NPR1), ROS, calcium ions (Ca2+), nitric oxide (NO) and mitogen-activated protein kinase (MAPK) cascades. In this review, we summarize the recent advances in the regulation of ROS and antioxidant defense system signalling by SA at the physiological and molecular levels. Understanding the molecular mechanisms of how SA controls redox homeostasis would provide a fundamental framework to develop approaches that will improve plant growth and fitness, in order to meet the increasing global demand for food and bioenergy.
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Affiliation(s)
- Mohd Saleem
- Plant Physiology and Biochemistry Section, Department of Botany, Faculty of Life Sciences, Aligarh Muslim University, Aligarh, 202002, India
| | - Qazi Fariduddin
- Plant Physiology and Biochemistry Section, Department of Botany, Faculty of Life Sciences, Aligarh Muslim University, Aligarh, 202002, India.
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38
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Kachroo P, Burch-Smith TM, Grant M. An Emerging Role for Chloroplasts in Disease and Defense. ANNUAL REVIEW OF PHYTOPATHOLOGY 2021; 59:423-445. [PMID: 34432508 DOI: 10.1146/annurev-phyto-020620-115813] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Chloroplasts are key players in plant immune signaling, contributing to not only de novo synthesis of defensive phytohormones but also the generation of reactive oxygen and nitrogen species following activation of pattern recognition receptors or resistance (R) proteins. The local hypersensitive response (HR) elicited by R proteins is underpinned by chloroplast-generated reactive oxygen species. HR-induced lipid peroxidation generates important chloroplast-derived signaling lipids essential to the establishment of systemic immunity. As a consequence of this pivotal role in immunity, pathogens deploy effector complements that directly or indirectly target chloroplasts to attenuate chloroplast immunity (CI). Our review summarizes the current knowledge of CI signaling and highlights common pathogen chloroplast targets and virulence strategies. We address emerging insights into chloroplast retrograde signaling in immune responses and gaps in our knowledge, including the importance of understanding chloroplast heterogeneity and chloroplast involvement in intraorganellular interactions in host immunity.
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Affiliation(s)
- Pradeep Kachroo
- Department of Plant Pathology, University of Kentucky, Lexington, Kentucky 40546, USA
| | - Tessa M Burch-Smith
- Department of Biochemistry & Cellular and Molecular Biology, University of Tennessee, Knoxville, Tennessee 37996, USA
| | - Murray Grant
- School of Life Sciences, University of Warwick, Coventry, CV4 7AL, UK;
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Allwood JW, Williams A, Uthe H, van Dam NM, Mur LAJ, Grant MR, Pétriacq P. Unravelling Plant Responses to Stress-The Importance of Targeted and Untargeted Metabolomics. Metabolites 2021; 11:558. [PMID: 34436499 PMCID: PMC8398504 DOI: 10.3390/metabo11080558] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2021] [Revised: 08/10/2021] [Accepted: 08/16/2021] [Indexed: 12/19/2022] Open
Abstract
Climate change and an increasing population, present a massive global challenge with respect to environmentally sustainable nutritious food production. Crop yield enhancements, through breeding, are decreasing, whilst agricultural intensification is constrained by emerging, re-emerging, and endemic pests and pathogens, accounting for ~30% of global crop losses, as well as mounting abiotic stress pressures, due to climate change. Metabolomics approaches have previously contributed to our knowledge within the fields of molecular plant pathology and plant-insect interactions. However, these remain incredibly challenging targets, due to the vast diversity in metabolite volatility and polarity, heterogeneous mixtures of pathogen and plant cells, as well as rapid rates of metabolite turn-over. Unravelling the systematic biochemical responses of plants to various individual and combined stresses, involves monitoring signaling compounds, secondary messengers, phytohormones, and defensive and protective chemicals. This demands both targeted and untargeted metabolomics approaches, as well as a range of enzymatic assays, protein assays, and proteomic and transcriptomic technologies. In this review, we focus upon the technical and biological challenges of measuring the metabolome associated with plant stress. We illustrate the challenges, with relevant examples from bacterial and fungal molecular pathologies, plant-insect interactions, and abiotic and combined stress in the environment. We also discuss future prospects from both the perspective of key innovative metabolomic technologies and their deployment in breeding for stress resistance.
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Affiliation(s)
- James William Allwood
- Environmental and Biochemical Sciences, James Hutton Institute, Errol Road, Invergowrie, Dundee DD2 5DA, UK
| | - Alex Williams
- School of Earth and Environmental Sciences, The University of Manchester, Oxford Road, Manchester M13 9PT, UK;
- Department of Animal and Plant Sciences, Biosciences, The University of Sheffield Western Bank, Sheffield S10 2TN, UK
| | - Henriette Uthe
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Molecular Interaction Ecology Group, Friedrich-Schiller University Jena, Puschstr. 4, 04103 Leipzig, Germany; (H.U.); (N.M.v.D.)
| | - Nicole M. van Dam
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Molecular Interaction Ecology Group, Friedrich-Schiller University Jena, Puschstr. 4, 04103 Leipzig, Germany; (H.U.); (N.M.v.D.)
| | - Luis A. J. Mur
- Institute of Biological, Environmental and Rural Sciences (IBERS), Edward Llwyd Building, Aberystwyth University, Aberystwyth SY23 3DA, UK;
| | - Murray R. Grant
- Gibbet Hill Campus, School of Life Sciences, The University of Warwick, Coventry CV4 7AL, UK;
| | - Pierre Pétriacq
- UMR 1332 Fruit Biology and Pathology, Centre INRAE de Nouvelle Aquitaine Bordeaux, University of Bordeaux, 33140 Villenave d’Ornon, France
- Bordeaux Metabolome, MetaboHUB, PHENOME-EMPHASIS, Centre INRAE de Nouvelle Aquitaine-Bordeaux, 33140 Villenave d’Ornon, France
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40
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Zeier J. Metabolic regulation of systemic acquired resistance. CURRENT OPINION IN PLANT BIOLOGY 2021; 62:102050. [PMID: 34058598 DOI: 10.1016/j.pbi.2021.102050] [Citation(s) in RCA: 53] [Impact Index Per Article: 17.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/13/2021] [Revised: 03/29/2021] [Accepted: 04/11/2021] [Indexed: 05/03/2023]
Abstract
Plants achieve an optimal balance between growth and defense by a fine-tuned biosynthesis and metabolic inactivation of immune-stimulating small molecules. Recent research illustrates that three common hubs are involved in the cooperative regulation of systemic acquired resistance (SAR) by the defense hormones N-hydroxypipecolic acid (NHP) and salicylic acid (SA). First, a common set of regulatory proteins is involved in their biosynthesis. Second, NHP and SA are glucosylated by the same glycosyltransferase, UGT76B1, and thereby inactivated in concert. And third, NHP confers immunity via the SA receptor NPR1 to reprogram plants at the level of transcription and primes plants for an enhanced defense capacity. An overview of SA and NHP metabolism is provided, and their contribution to long-distance signaling in SAR is discussed.
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Affiliation(s)
- Jürgen Zeier
- Institute for Molecular Ecophysiology of Plants, Department of Biology, Heinrich Heine University, Universitätsstraße 1, D-40225 Düsseldorf, Germany; Cluster of Excellence on Plant Sciences (CEPLAS), Heinrich Heine University, Universitätsstraße 1, D-40225 Düsseldorf, Germany.
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41
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Yildiz I, Mantz M, Hartmann M, Zeier T, Kessel J, Thurow C, Gatz C, Petzsch P, Köhrer K, Zeier J. The mobile SAR signal N-hydroxypipecolic acid induces NPR1-dependent transcriptional reprogramming and immune priming. PLANT PHYSIOLOGY 2021; 186:1679-1705. [PMID: 33871649 PMCID: PMC8260123 DOI: 10.1093/plphys/kiab166] [Citation(s) in RCA: 35] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2021] [Accepted: 03/29/2021] [Indexed: 05/07/2023]
Abstract
N-hydroxypipecolic acid (NHP) accumulates in the plant foliage in response to a localized microbial attack and induces systemic acquired resistance (SAR) in distant leaf tissue. Previous studies indicated that pathogen inoculation of Arabidopsis (Arabidopsis thaliana) systemically activates SAR-related transcriptional reprogramming and a primed immune status in strict dependence of FLAVIN-DEPENDENT MONOOXYGENASE 1 (FMO1), which mediates the endogenous biosynthesis of NHP. Here, we show that elevations of NHP by exogenous treatment are sufficient to induce a SAR-reminiscent transcriptional response that mobilizes key components of immune surveillance and signal transduction. Exogenous NHP primes Arabidopsis wild-type and NHP-deficient fmo1 plants for a boosted induction of pathogen-triggered defenses, such as the biosynthesis of the stress hormone salicylic acid (SA), accumulation of the phytoalexin camalexin and branched-chain amino acids, as well as expression of defense-related genes. NHP also sensitizes the foliage systemically for enhanced SA-inducible gene expression. NHP-triggered SAR, transcriptional reprogramming, and defense priming are fortified by SA accumulation, and require the function of the transcriptional coregulator NON-EXPRESSOR OF PR GENES1 (NPR1). Our results suggest that NPR1 transduces NHP-activated immune signaling modes with predominantly SA-dependent and minor SA-independent features. They further support the notion that NHP functions as a mobile immune regulator capable of moving independently of active SA signaling between leaves to systemically activate immune responses.
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Affiliation(s)
- Ipek Yildiz
- Department of Biology, Institute for Molecular Ecophysiology of Plants, Heinrich Heine University, Düsseldorf D-40225, Germany
| | - Melissa Mantz
- Department of Biology, Institute for Molecular Ecophysiology of Plants, Heinrich Heine University, Düsseldorf D-40225, Germany
| | - Michael Hartmann
- Department of Biology, Institute for Molecular Ecophysiology of Plants, Heinrich Heine University, Düsseldorf D-40225, Germany
| | - Tatyana Zeier
- Department of Biology, Institute for Molecular Ecophysiology of Plants, Heinrich Heine University, Düsseldorf D-40225, Germany
| | - Jana Kessel
- Department of Biology, Institute for Molecular Ecophysiology of Plants, Heinrich Heine University, Düsseldorf D-40225, Germany
| | - Corinna Thurow
- Department of Plant Molecular Biology and Physiology, Albrecht-von-Haller Institute for Plant Sciences, University of Göttingen, Göttingen D-37077, Germany
| | - Christiane Gatz
- Department of Plant Molecular Biology and Physiology, Albrecht-von-Haller Institute for Plant Sciences, University of Göttingen, Göttingen D-37077, Germany
| | - Patrick Petzsch
- Medical Faculty, Biological and Medical Research Center (BMFZ), Heinrich Heine University, Düsseldorf D-40225, Germany
| | - Karl Köhrer
- Medical Faculty, Biological and Medical Research Center (BMFZ), Heinrich Heine University, Düsseldorf D-40225, Germany
| | - Jürgen Zeier
- Department of Biology, Institute for Molecular Ecophysiology of Plants, Heinrich Heine University, Düsseldorf D-40225, Germany
- Cluster of Excellence on Plant Sciences (CEPLAS), Düsseldorf D-40225, Germany
- Author for communication:
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42
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Heinemann B, Hildebrandt TM. The role of amino acid metabolism in signaling and metabolic adaptation to stress-induced energy deficiency in plants. JOURNAL OF EXPERIMENTAL BOTANY 2021; 72:4634-4645. [PMID: 33993299 DOI: 10.1093/jxb/erab182] [Citation(s) in RCA: 48] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2020] [Accepted: 04/26/2021] [Indexed: 05/26/2023]
Abstract
The adaptation of plant metabolism to stress-induced energy deficiency involves profound changes in amino acid metabolism. Anabolic reactions are suppressed, whereas respiratory pathways that use amino acids as alternative substrates are activated. This review highlights recent progress in unraveling the stress-induced amino acid oxidation pathways, their regulation, and the role of amino acids as signaling molecules. We present an updated map of the degradation pathways for lysine and the branched-chain amino acids. The regulation of amino acid metabolism during energy deprivation, including the coordinated induction of several catabolic pathways, is mediated by the balance between TOR and SnRK signaling. Recent findings indicate that some amino acids might act as nutrient signals in TOR activation and thus promote a shift from catabolic to anabolic pathways. The metabolism of the sulfur-containing amino acid cysteine is highly interconnected with TOR and SnRK signaling. Mechanistic details have recently been elucidated for cysteine signaling during the abscisic acid-dependent drought response. Local cysteine synthesis triggers abscisic acid production and, in addition, cysteine degradation produces the gaseous messenger hydrogen sulfide, which promotes stomatal closure via protein persulfidation. Amino acid signaling in plants is still an emerging topic with potential for fundamental discoveries.
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Affiliation(s)
- Björn Heinemann
- Institute for Plant Genetics, Department of Plant Proteomics, Leibniz University Hannover, Herrenhäuser Straße, Hannover, Germany
| | - Tatjana M Hildebrandt
- Institute for Plant Genetics, Department of Plant Proteomics, Leibniz University Hannover, Herrenhäuser Straße, Hannover, Germany
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Bauer S, Mekonnen DW, Hartmann M, Yildiz I, Janowski R, Lange B, Geist B, Zeier J, Schäffner AR. UGT76B1, a promiscuous hub of small molecule-based immune signaling, glucosylates N-hydroxypipecolic acid, and balances plant immunity. THE PLANT CELL 2021; 33:714-734. [PMID: 33955482 PMCID: PMC8136890 DOI: 10.1093/plcell/koaa044] [Citation(s) in RCA: 35] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2020] [Accepted: 12/04/2020] [Indexed: 05/13/2023]
Abstract
Glucosylation modulates the biological activity of small molecules and frequently leads to their inactivation. The Arabidopsis thaliana glucosyltransferase UGT76B1 is involved in conjugating the stress hormone salicylic acid (SA) as well as isoleucic acid (ILA). Here, we show that UGT76B1 also glucosylates N-hydroxypipecolic acid (NHP), which is synthesized by FLAVIN-DEPENDENT MONOOXYGENASE 1 (FMO1) and activates systemic acquired resistance (SAR). Upon pathogen attack, Arabidopsis leaves generate two distinct NHP hexose conjugates, NHP-O-β-glucoside and NHP glucose ester, whereupon only NHP-O-β-glucoside formation requires a functional SA pathway. The ugt76b1 mutants specifically fail to generate the NHP-O-β-glucoside, and recombinant UGT76B1 synthesizes NHP-O-β-glucoside in vitro in competition with SA and ILA. The loss of UGT76B1 elevates the endogenous levels of NHP, SA, and ILA and establishes a constitutive SAR-like immune status. Introgression of the fmo1 mutant lacking NHP biosynthesis into the ugt76b1 background abolishes this SAR-like resistance. Moreover, overexpression of UGT76B1 in Arabidopsis shifts the NHP and SA pools toward O-β-glucoside formation and abrogates pathogen-induced SAR. Our results further indicate that NHP-triggered immunity is SA-dependent and relies on UGT76B1 as a common metabolic hub. Thereby, UGT76B1-mediated glucosylation controls the levels of active NHP, SA, and ILA in concert to balance the plant immune status.
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Affiliation(s)
- Sibylle Bauer
- Department of Environmental Sciences, Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, München, Germany
| | - Dereje W Mekonnen
- Department of Environmental Sciences, Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, München, Germany
| | - Michael Hartmann
- Department of Biology, Heinrich-Heine-Universität Düsseldorf, Düsseldorf, Germany
| | - Ipek Yildiz
- Department of Biology, Heinrich-Heine-Universität Düsseldorf, Düsseldorf, Germany
| | - Robert Janowski
- Intracellular Transport and RNA Biology Group, Institute of Structural Biology, Helmholtz Zentrum München, München, Germany
| | - Birgit Lange
- Department of Environmental Sciences, Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, München, Germany
| | - Birgit Geist
- Department of Environmental Sciences, Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, München, Germany
| | - Jürgen Zeier
- Department of Biology, Heinrich-Heine-Universität Düsseldorf, Düsseldorf, Germany
| | - Anton R Schäffner
- Department of Environmental Sciences, Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, München, Germany
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Bauer S, Mekonnen DW, Hartmann M, Yildiz I, Janowski R, Lange B, Geist B, Zeier J, Schäffner AR. UGT76B1, a promiscuous hub of small molecule-based immune signaling, glucosylates N-hydroxypipecolic acid, and balances plant immunity. THE PLANT CELL 2021. [PMID: 33955482 DOI: 10.1101/2020.07.12.199356] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
Abstract
Glucosylation modulates the biological activity of small molecules and frequently leads to their inactivation. The Arabidopsis thaliana glucosyltransferase UGT76B1 is involved in conjugating the stress hormone salicylic acid (SA) as well as isoleucic acid (ILA). Here, we show that UGT76B1 also glucosylates N-hydroxypipecolic acid (NHP), which is synthesized by FLAVIN-DEPENDENT MONOOXYGENASE 1 (FMO1) and activates systemic acquired resistance (SAR). Upon pathogen attack, Arabidopsis leaves generate two distinct NHP hexose conjugates, NHP-O-β-glucoside and NHP glucose ester, whereupon only NHP-O-β-glucoside formation requires a functional SA pathway. The ugt76b1 mutants specifically fail to generate the NHP-O-β-glucoside, and recombinant UGT76B1 synthesizes NHP-O-β-glucoside in vitro in competition with SA and ILA. The loss of UGT76B1 elevates the endogenous levels of NHP, SA, and ILA and establishes a constitutive SAR-like immune status. Introgression of the fmo1 mutant lacking NHP biosynthesis into the ugt76b1 background abolishes this SAR-like resistance. Moreover, overexpression of UGT76B1 in Arabidopsis shifts the NHP and SA pools toward O-β-glucoside formation and abrogates pathogen-induced SAR. Our results further indicate that NHP-triggered immunity is SA-dependent and relies on UGT76B1 as a common metabolic hub. Thereby, UGT76B1-mediated glucosylation controls the levels of active NHP, SA, and ILA in concert to balance the plant immune status.
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Affiliation(s)
- Sibylle Bauer
- Department of Environmental Sciences, Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, München, Germany
| | - Dereje W Mekonnen
- Department of Environmental Sciences, Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, München, Germany
| | - Michael Hartmann
- Department of Biology, Heinrich-Heine-Universität Düsseldorf, Düsseldorf, Germany
| | - Ipek Yildiz
- Department of Biology, Heinrich-Heine-Universität Düsseldorf, Düsseldorf, Germany
| | - Robert Janowski
- Intracellular Transport and RNA Biology Group, Institute of Structural Biology, Helmholtz Zentrum München, München, Germany
| | - Birgit Lange
- Department of Environmental Sciences, Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, München, Germany
| | - Birgit Geist
- Department of Environmental Sciences, Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, München, Germany
| | - Jürgen Zeier
- Department of Biology, Heinrich-Heine-Universität Düsseldorf, Düsseldorf, Germany
| | - Anton R Schäffner
- Department of Environmental Sciences, Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, München, Germany
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Mohnike L, Rekhter D, Huang W, Feussner K, Tian H, Herrfurth C, Zhang Y, Feussner I. The glycosyltransferase UGT76B1 modulates N-hydroxy-pipecolic acid homeostasis and plant immunity. THE PLANT CELL 2021; 33:735-749. [PMID: 33955489 PMCID: PMC8136917 DOI: 10.1093/plcell/koaa045] [Citation(s) in RCA: 62] [Impact Index Per Article: 20.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2020] [Accepted: 12/10/2020] [Indexed: 05/02/2023]
Abstract
The tradeoff between growth and defense is a critical aspect of plant immunity. Therefore, the plant immune response needs to be tightly regulated. Salicylic acid (SA) is an important plant hormone regulating defense against biotrophic pathogens. Recently, N-hydroxy-pipecolic acid (NHP) was identified as another regulator for plant innate immunity and systemic acquired resistance (SAR). Although the biosynthetic pathway leading to NHP formation is already been identified, how NHP is further metabolized is unclear. Here, we present UGT76B1 as a uridine diphosphate-dependent glycosyltransferase (UGT) that modifies NHP by catalyzing the formation of 1-O-glucosyl-pipecolic acid in Arabidopsis thaliana. Analysis of T-DNA and clustered regularly interspaced short palindromic repeats (CRISPR) knock-out mutant lines of UGT76B1 by targeted and nontargeted ultra-high performance liquid chromatography coupled to high-resolution mass spectrometry (UHPLC-HRMS) underlined NHP and SA as endogenous substrates of this enzyme in response to Pseudomonas infection and UV treatment. ugt76b1 mutant plants have a dwarf phenotype and constitutive defense response which can be suppressed by loss of function of the NHP biosynthetic enzyme FLAVIN-DEPENDENT MONOOXYGENASE 1 (FMO1). This suggests that elevated accumulation of NHP contributes to the enhanced disease resistance in ugt76b1. Externally applied NHP can move to distal tissue in ugt76b1 mutant plants. Although glycosylation is not required for the long-distance movement of NHP during SAR, it is crucial to balance growth and defense.
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Affiliation(s)
- Lennart Mohnike
- Department of Plant Biochemistry, Albrecht-von-Haller-Institute for Plant Sciences, University of Goettingen, D-37077 Goettingen, Germany
| | - Dmitrij Rekhter
- Department of Plant Biochemistry, Albrecht-von-Haller-Institute for Plant Sciences, University of Goettingen, D-37077 Goettingen, Germany
| | - Weijie Huang
- Department of Botany, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
| | - Kirstin Feussner
- Department of Plant Biochemistry, Albrecht-von-Haller-Institute for Plant Sciences, University of Goettingen, D-37077 Goettingen, Germany
- Service Unit for Metabolomics and Lipidomics, Goettingen center for Molecular Biosciences (GZMB), University of Goettingen, D-37077 Goettingen, Germany
| | - Hainan Tian
- Department of Botany, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
| | - Cornelia Herrfurth
- Department of Plant Biochemistry, Albrecht-von-Haller-Institute for Plant Sciences, University of Goettingen, D-37077 Goettingen, Germany
- Service Unit for Metabolomics and Lipidomics, Goettingen center for Molecular Biosciences (GZMB), University of Goettingen, D-37077 Goettingen, Germany
| | - Yuelin Zhang
- Department of Botany, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
- Author for correspondence: (I.F.) and (Y.Z)
| | - Ivo Feussner
- Department of Plant Biochemistry, Albrecht-von-Haller-Institute for Plant Sciences, University of Goettingen, D-37077 Goettingen, Germany
- Service Unit for Metabolomics and Lipidomics, Goettingen center for Molecular Biosciences (GZMB), University of Goettingen, D-37077 Goettingen, Germany
- Department of Plant Biochemistry, Goettingen Center for Molecular Biosciences (GZMB), University of Goettingen, D-37077 Goettingen, Germany
- Author for correspondence: (I.F.) and (Y.Z)
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Pazarlar S, Sanver U, Cetinkaya N. Exogenous pipecolic acid modulates plant defence responses against Podosphaera xanthii and Pseudomonas syringae pv. lachrymans in cucumber (Cucumis sativus L.). PLANT BIOLOGY (STUTTGART, GERMANY) 2021; 23:473-484. [PMID: 33547740 DOI: 10.1111/plb.13243] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2020] [Accepted: 01/23/2021] [Indexed: 06/12/2023]
Abstract
Systemic acquired resistance (SAR) is a long-lasting and broad-based resistance that can be activated following infection with (a)virulent pathogens and treatment with exogenous elicitors. Pipecolic acid (Pip), a Lys-derived non-protein amino acid, naturally occurs in many different plant species, and its N-hydroxylated derivative, N-hydroxypipecolic acid (NHP), acts as a crucial regulator of SAR. In the present study, we conducted a systemic analysis of the defence responses of a series of D,L-Pip-pretreated Cucumis sativus L. against Podosphaera xanthii (P. xanthii) and Pseudomonas syringae pv. lachrymans (Psl). The effects of D,L-Pip on ROS metabolism, defence-related gene expression, SA accumulation and activity of defence-related enzymes were evaluated. We show that exogenously applied D,L-Pip successfully induces SAR in cucumber against P. xanthii and Psl, but not Fusarium oxysporum f. sp. cucumerinum (Foc). Exogenous application of D,L-Pip via the root system is sufficient to activate the accumulation of free and conjugated salicylic acid (SA), and earlier and stronger upregulation of SAR-associated gene transcription upon P. xanthii infection. Furthermore, D,L-Pip treatment and subsequent pathogen inoculation promote hydrogen peroxide and superoxide accumulation, as well as Rboh transcription activation in cucumber plants, suggesting that D,L-Pip-triggered ROS production might be involved in enhanced defence reactions against P. xanthii. We also demonstrate that D,L-Pip pretreatment increases the activity of defence-associated enzymes, including peroxidase, chitinase and β-1,3-glucanase. The results presented in this report provide promising features of Pip as an elicitor in cucumber and call for further studies that may uncover its potential in production areas against different phytopathogens.
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Affiliation(s)
- S Pazarlar
- Department of Plant Protection, Faculty of Agriculture, Ege University, Izmir, Turkey
| | - U Sanver
- Department of Plant Protection, Faculty of Agriculture, Ege University, Izmir, Turkey
| | - N Cetinkaya
- Department of Plant Protection, Faculty of Agriculture, Ege University, Izmir, Turkey
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47
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Signals in systemic acquired resistance of plants against microbial pathogens. Mol Biol Rep 2021; 48:3747-3759. [PMID: 33893927 DOI: 10.1007/s11033-021-06344-7] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2020] [Accepted: 04/07/2021] [Indexed: 01/06/2023]
Abstract
After a local infection by the microbial pathogens, plants will produce strong resistance in distal tissues to cope with the subsequent biotic attacks. This type of the resistance in the whole plant is termed as systemic acquired resistance (SAR). The priming of SAR can confer the robust defense responses and the broad-spectrum disease resistances in plants. In general, SAR is activated by the signal substances generated at the local sites of infection, and these small signaling molecules can be rapidly transported to the systemic tissues through the phloem. In the last two decades, numerous endogenous metabolites were proved to be the potential elicitors of SAR, including methyl salicylate (MeSA), azelaic acid (AzA), glycerol-3-phosphate (G3P), free radicals (NO and ROS), pipecolic acid (Pip), N-hydroxy-pipecolic acid (NHP), dehydroabietinal (DA), monoterpenes (α-pinene and β-pinene) and NAD(P). In the meantime, the proteins associated with the transport of these signaling molecules were also identified, such as DIR1 (DEFECTIVE IN INDUCED RESISTANCE 1) and AZI1 (AZELAIC ACID INDUCED 1). This review summarizes the recent findings related to synthesis, transport and interaction of the different signal substances in SAR.
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48
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Torrens-Spence MP, Glinkerman CM, Günther J, Weng JK. Imine chemistry in plant metabolism. CURRENT OPINION IN PLANT BIOLOGY 2021; 60:101999. [PMID: 33450608 DOI: 10.1016/j.pbi.2020.101999] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/15/2020] [Revised: 12/25/2020] [Accepted: 12/28/2020] [Indexed: 06/12/2023]
Abstract
Imine chemistry represents an important category of chemical reactions involved in the biosynthesis of plant natural products, ranging from the newly discovered mobile defense hormone N-hydroxy-pipecolic acid to the red-to-yellow tyrosine-derived betalain pigments. Spontaneous imine formation reactions have also served as the basis for the evolution of numerous plant metabolic enzymes, such as specialized Pictet-Spenglerases that produce the backbone structures of benzylisoquinoline and monoterpene indole alkaloids and pyridoxal 5'-phosphate-dependent enzymes of diverse functions. Here, we review occurrences of imine chemistry in plant metabolism and their chemical and biochemical mechanisms. A better understanding of plant imine chemistry will ultimately facilitate synthetic biology approaches to further expand the scope of imine natural product biosynthesis for broad biotechnological applications.
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Affiliation(s)
| | | | - Jan Günther
- Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871 Frederiksberg C, Denmark
| | - Jing-Ke Weng
- Whitehead Institute for Biomedical Research, 455 Main Street, Cambridge, MA 02142, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
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Jiang SC, Engle NL, Banday ZZ, Cecchini NM, Jung HW, Tschaplinski TJ, Greenberg JT. ALD1 accumulation in Arabidopsis epidermal plastids confers local and non-autonomous disease resistance. JOURNAL OF EXPERIMENTAL BOTANY 2021; 72:2710-2726. [PMID: 33463678 PMCID: PMC8006555 DOI: 10.1093/jxb/eraa609] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2020] [Accepted: 12/24/2020] [Indexed: 05/10/2023]
Abstract
The Arabidopsis plastid-localized ALD1 protein acts in the lysine catabolic pathway that produces infection-induced pipecolic acid (Pip), Pip derivatives, and basal non-Pip metabolite(s). ALD1 is indispensable for disease resistance associated with Pseudomonas syringae infections of naïve plants as well as those previously immunized by a local infection, a phenomenon called systemic acquired resistance (SAR). Pseudomonas syringae is known to associate with mesophyll as well as epidermal cells. To probe the importance of epidermal cells in conferring bacterial disease resistance, we studied plants in which ALD1 was only detectable in the epidermal cells of specific leaves. Local disease resistance and many features of SAR were restored when ALD1 preferentially accumulated in the epidermal plastids at immunization sites. Interestingly, SAR restoration occurred without appreciable accumulation of Pip or known Pip derivatives in secondary distal leaves. Our findings establish that ALD1 has a non-autonomous effect on pathogen growth and defense activation. We propose that ALD1 is sufficient in the epidermis of the immunized leaves to activate SAR, but basal ALD1 and possibly a non-Pip metabolite(s) are also needed at all infection sites to fully suppress bacterial growth. Thus, epidermal plastids that contain ALD1 play a key role in local and whole-plant immune signaling.
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Affiliation(s)
- Shang-Chuan Jiang
- Department of Molecular Genetics and Cell Biology, The University of Chicago, Chicago, IL, USA
| | | | - Zeeshan Zahoor Banday
- Department of Molecular Genetics and Cell Biology, The University of Chicago, Chicago, IL, USA
| | - Nicolás M Cecchini
- Department of Molecular Genetics and Cell Biology, The University of Chicago, Chicago, IL, USA
| | - Ho Won Jung
- Department of Molecular Genetics and Cell Biology, The University of Chicago, Chicago, IL, USA
| | | | - Jean T Greenberg
- Department of Molecular Genetics and Cell Biology, The University of Chicago, Chicago, IL, USA
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50
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Vlot AC. A quest for long-distance signals: the epidermis as central regulator of pipecolic acid-associated systemic acquired resistance. JOURNAL OF EXPERIMENTAL BOTANY 2021; 72:2266-2268. [PMID: 33779751 PMCID: PMC8006548 DOI: 10.1093/jxb/eraa606] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
This article comments on: Jiang SC, Engle NL, Banday ZZ, Cecchini NM, Jung HW, Tschaplinski TJ, Greenberg JT. 2021. ALD1 accumulation in Arabidopsis epidermal plastids confers local and non-autonomous disease resistance. Journal of Experimental Botany 72, 2710–2726.
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Affiliation(s)
- A Corina Vlot
- Helmholtz Zentrum München, Institute of Biochemical Plant Pathology, Ingolstaedter Landstr. 1, D-85764 Neuherberg, Germany
- Correspondence:
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