1
|
Dellinger AS, Lagomarsino L, Michelangeli F, Dullinger S, Smith SD. The Sequential Direct and Indirect Effects of Mountain Uplift, Climatic Niche, and Floral Trait Evolution on Diversification Dynamics in an Andean Plant Clade. Syst Biol 2024; 73:594-612. [PMID: 38554255 PMCID: PMC11377192 DOI: 10.1093/sysbio/syae011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2023] [Revised: 02/28/2024] [Accepted: 04/11/2024] [Indexed: 04/01/2024] Open
Abstract
Why and how organismal lineages radiate is commonly studied through either assessing abiotic factors (biogeography, geomorphological processes, and climate) or biotic factors (traits and interactions). Despite increasing awareness that both abiotic and biotic processes may have important joint effects on diversification dynamics, few attempts have been made to quantify the relative importance and timing of these factors, and their potentially interlinked direct and indirect effects, on lineage diversification. We here combine assessments of historical biogeography, geomorphology, climatic niche, vegetative, and floral trait evolution to test whether these factors jointly, or in isolation, explain diversification dynamics of a Neotropical plant clade (Merianieae, Melastomataceae). After estimating ancestral areas and the changes in niche and trait disparity over time, we employ Phylogenetic Path Analyses as a synthesis tool to test eleven hypotheses on the individual direct and indirect effects of these factors on diversification rates. We find strongest support for interlinked effects of colonization of the uplifting Andes during the mid-Miocene and rapid abiotic climatic niche evolution in explaining a burst in diversification rate in Merianieae. Within Andean habitats, later increases in floral disparity allowed for the exploitation of wider pollination niches (i.e., shifts from bee to vertebrate pollinators), but did not affect diversification rates. Our approach of including both vegetative and floral trait evolution, rare in assessments of plant diversification in general, highlights that the evolution of woody habit and larger flowers preceded the colonization of the Andes, but was likely critical in enabling the rapid radiation in montane environments. Overall, and in concert with the idea that ecological opportunity is a key element of evolutionary radiations, our results suggest that a combination of rapid niche evolution and trait shifts was critical for the exploitation of newly available niche space in the Andes in the mid-Miocene. Further, our results emphasize the importance of incorporating both abiotic and biotic factors into the same analytical framework if we aim to quantify the relative and interlinked effects of these processes on diversification.
Collapse
Affiliation(s)
- Agnes S Dellinger
- Department of Botany and Biodiversity Research, University of Vienna, Rennweg 14, 1030 Vienna, Austria
- Ecology and Evolutionary Biology, University of Colorado Boulder, 1800 Colorado Ave., Boulder, CO 80309-0334, USA
| | - Laura Lagomarsino
- Shirley C. Tucker Herbarium, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA
| | - Fabián Michelangeli
- Institute of Systematic Botany, The New York Botanical Garden, 2900 Southern Blvd, Bronx, NY 10458, USA
| | - Stefan Dullinger
- Department of Botany and Biodiversity Research, University of Vienna, Rennweg 14, 1030 Vienna, Austria
| | - Stacey D Smith
- Ecology and Evolutionary Biology, University of Colorado Boulder, 1800 Colorado Ave., Boulder, CO 80309-0334, USA
| |
Collapse
|
2
|
Dunbar A, Drigo B, Djordjevic SP, Donner E, Hoye BJ. Impacts of coprophagic foraging behaviour on the avian gut microbiome. Biol Rev Camb Philos Soc 2024; 99:582-597. [PMID: 38062990 DOI: 10.1111/brv.13036] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2023] [Revised: 11/24/2023] [Accepted: 11/27/2023] [Indexed: 03/06/2024]
Abstract
Avian gut microbial communities are complex and play a fundamental role in regulating biological functions within an individual. Although it is well established that diet can influence the structure and composition of the gut microbiota, foraging behaviour may also play a critical, yet unexplored role in shaping the composition, dynamics, and adaptive potential of avian gut microbiota. In this review, we examine the potential influence of coprophagic foraging behaviour on the establishment and adaptability of wild avian gut microbiomes. Coprophagy involves the ingestion of faeces, sourced from either self (autocoprophagy), conspecific animals (allocoprophagy), or heterospecific animals. Much like faecal transplant therapy, coprophagy may (i) support the establishment of the gut microbiota of young precocial species, (ii) directly and indirectly provide nutritional and energetic requirements, and (iii) represent a mechanism by which birds can rapidly adapt the microbiota to changing environments and diets. However, in certain contexts, coprophagy may also pose risks to wild birds, and their microbiomes, through increased exposure to chemical pollutants, pathogenic microbes, and antibiotic-resistant microbes, with deleterious effects on host health and performance. Given the potentially far-reaching consequences of coprophagy for avian microbiomes, and the dearth of literature directly investigating these links, we have developed a predictive framework for directing future research to understand better when and why wild birds engage in distinct types of coprophagy, and the consequences of this foraging behaviour. There is a need for comprehensive investigation into the influence of coprophagy on avian gut microbiotas and its effects on host health and performance throughout ontogeny and across a range of environmental perturbations. Future behavioural studies combined with metagenomic approaches are needed to provide insights into the function of this poorly understood behaviour.
Collapse
Affiliation(s)
- Alice Dunbar
- Future Industries Institute (FII), University of South Australia, Mawson Lakes Campus, GPO Box 2471 5095, Adelaide, South Australia, Australia
| | - Barbara Drigo
- Future Industries Institute (FII), University of South Australia, Mawson Lakes Campus, GPO Box 2471 5095, Adelaide, South Australia, Australia
- UniSA STEM, University of South Australia, GPO Box 2471, Adelaide, South Australia, 5001, Australia
| | - Steven P Djordjevic
- Australian Institute for Microbiology and Infection, University of Technology Sydney, PO Box 123, Ultimo, New South Wales, 2007, Australia
- Australian Centre for Genomic Epidemiological Microbiology, University of Technology Sydney, PO Box 123, Ultimo, New South Wales, 2007, Australia
| | - Erica Donner
- Future Industries Institute (FII), University of South Australia, Mawson Lakes Campus, GPO Box 2471 5095, Adelaide, South Australia, Australia
- Cooperative Research Centre for Solving Antimicrobial Resistance in Agribusiness, Food, and Environments (CRC SAAFE), University of South Australia, GPO Box 2471 5095, Adelaide, South Australia, Australia
| | - Bethany J Hoye
- School of Earth, Atmospheric and Life Sciences, University of Wollongong, Wollongong, New South Wales, 2522, Australia
| |
Collapse
|
3
|
Qiao H, Peterson AT, Myers CE, Yang Q, Saupe EE. Ecological niche conservatism spurs diversification in response to climate change. Nat Ecol Evol 2024; 8:729-738. [PMID: 38374186 PMCID: PMC11009114 DOI: 10.1038/s41559-024-02344-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2023] [Accepted: 01/24/2024] [Indexed: 02/21/2024]
Abstract
Lengthy debate has surrounded the theoretical and empirical science of whether climatic niche evolution is related to increased or decreased rates of biological diversification. Because species can persist for thousands to millions of years, these questions cross broad scales of time and space. Thus, short-term experiments may not provide comprehensive understanding of the system, leading to the emergence of contrasting opinions: niche evolution may increase diversity by allowing species to explore and colonize new geographic areas across which they could speciate; or, niche conservatism might augment biodiversity by supporting isolation of populations that may then undergo allopatric speciation. Here, we use a simulation approach to test how biological diversification responds to different rates and modes of niche evolution. We find that niche conservatism promotes biological diversification, whereas labile niches-whether adapting to the conditions available or changing randomly-generally led to slower diversification rates. These novel results provide a framework for understanding how Earth-life interactions produced such a diverse biota.
Collapse
Affiliation(s)
- Huijie Qiao
- Key Laboratory of Animal Ecology and Conservation Biology, Institute of Zoology, Chinese Academy of Sciences, Beijing, China.
| | | | - Corinne E Myers
- Department of Earth and Planetary Sciences, University of New Mexico, Albuquerque, NM, USA
| | - Qinmin Yang
- State Key Laboratory of Industrial Control Technology, College of Control Science and Engineering, Zhejiang University, Hangzhou, China
| | - Erin E Saupe
- Department of Earth Sciences, University of Oxford, Oxford, UK.
| |
Collapse
|
4
|
Fromm B, Sorger T. Rapid adaptation of cellular metabolic rate to the MicroRNA complements of mammals and its relevance to the evolution of endothermy. iScience 2024; 27:108740. [PMID: 38327773 PMCID: PMC10847693 DOI: 10.1016/j.isci.2023.108740] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2022] [Revised: 09/13/2023] [Accepted: 12/12/2023] [Indexed: 02/09/2024] Open
Abstract
The metabolic efficiency of mammalian cells depends on the attenuation of intrinsic translation noise by microRNAs. We devised a metric of cellular metabolic rate (cMR), rMR/Mexp optimally fit to the number of microRNA families (mirFam), that is robust to variation in mass and sensitive to body temperature (Tb), consistent with the heat dissipation limit theory of Speakman and Król (2010). Using mirFam as predictor, an Ornstein-Uhlenbeck process of stabilizing selection, with an adaptive shift at the divergence of Boreoeutheria, accounted for 95% of the variation in cMR across mammals. Branchwise rates of evolution of cMR, mirFam and Tb concurrently increased 6- to 7-fold at the divergence of Boreoeutheria, independent of mass. Cellular MR variation across placental mammals was also predicted by the sum of model conserved microRNA-target interactions, revealing an unexpected degree of integration of the microRNA-target apparatus into the energy economy of the mammalian cell.
Collapse
Affiliation(s)
- Bastian Fromm
- The Arctic University Museum of Norway, UiT- The Arctic University of Norway, Tromsø, Norway
| | - Thomas Sorger
- Department of Biology, Roger Williams University, Bristol, RI 02809, USA
| |
Collapse
|
5
|
Lizardo V, García Trejo EA, Morrone JJ. Niche conservatism and convergence in birds of three cenocrons in the Mexican Transition Zone. PeerJ 2024; 12:e16664. [PMID: 38188173 PMCID: PMC10768671 DOI: 10.7717/peerj.16664] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2023] [Accepted: 11/21/2023] [Indexed: 01/09/2024] Open
Abstract
Background The niche conservatism hypothesis postulates that physiological and phylogenetic factors constrain species distributions, creating richness hotspots with older lineages in ancestral climatic conditions. Conversely, niche convergence occurs when species successfully disperse to novel environments, diversifying and resulting in areas with high phylogenetic clustering and endemism, low diversity, and lower clade age. The Mexican Transition Zone exhibits both patterns as its biotic assembly resulted from successive dispersal events of different biotic elements called cenocrons. We test the hypothesis that biogeographic transitionallity in the area is a product of niche conservatism in the Nearctic and Typical Neotropical cenocrons and niche convergence in the Mountain Mesoamerican cenocron. Methods We split the avifauna into three species sets representing cenocrons (sets of taxa that share the same biogeographic history, constituting an identifiable subset within a biota by their common biotic origin and evolutionary history). Then, we correlated richness, endemism, phylogenetic diversity, number of nodes, and crowning age with environmental and topographic variables. These correlations were then compared with the predictions of niche conservatism versus niche convergence. We also detected areas of higher species density in environmental space and interpreted them as an environmental transition zone where birds' niches converge. Results Our findings support the expected predictions on how niches evolved. Nearctic and Typical Neotropical species behaved as predicted by niche conservatism, whereas Mountain Mesoamerican species and the total of species correlations indicated niche convergence. We also detected distinct ecological and evolutionary characteristics of the cenocrons on a macroecological scale and the environmental conditions where the three cenocrons overlap in the Mesoamerican region.
Collapse
Affiliation(s)
- Viridiana Lizardo
- Museum of Zoology ‘Alfonso L. Herrera’, Department of Evolutionary Biology, School of Sciences, Universidad Nacional Autónoma de México, Mexico City, CdMx, México
- Posgrado en Ciencias Biológicas, Universidad Nacional Autónoma de México, Mexico City, CdMx, México
| | - Erick Alejandro García Trejo
- Unit of Informatics for Biodiversity, Department of Evolutionary Biology, School of Sciences, Universidad Nacional Autónoma de México, Mexico City, CdMx, México
| | - Juan J. Morrone
- Museum of Zoology ‘Alfonso L. Herrera’, Department of Evolutionary Biology, School of Sciences, Universidad Nacional Autónoma de México, Mexico City, CdMx, México
| |
Collapse
|
6
|
Morinaga G, Wiens JJ, Moen DS. The radiation continuum and the evolution of frog diversity. Nat Commun 2023; 14:7100. [PMID: 37925440 PMCID: PMC10625520 DOI: 10.1038/s41467-023-42745-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2023] [Accepted: 10/19/2023] [Indexed: 11/06/2023] Open
Abstract
Most of life's vast diversity of species and phenotypes is often attributed to adaptive radiation. Yet its contribution to species and phenotypic diversity of a major group has not been examined. Two key questions remain unresolved. First, what proportion of clades show macroevolutionary dynamics similar to adaptive radiations? Second, what proportion of overall species richness and phenotypic diversity do these adaptive-radiation-like clades contain? We address these questions with phylogenetic and morphological data for 1226 frog species across 43 families (which represent >99% of all species). Less than half of frog families resembled adaptive radiations (with rapid diversification and morphological evolution). Yet, these adaptive-radiation-like clades encompassed ~75% of both morphological and species diversity, despite rapid rates in other clades (e.g., non-adaptive radiations). Overall, we support the importance of adaptive-radiation-like evolution for explaining diversity patterns and provide a framework for characterizing macroevolutionary dynamics and diversity patterns in other groups.
Collapse
Affiliation(s)
- Gen Morinaga
- Department of Integrative Biology, Oklahoma State University, Stillwater, OK, 74078, USA
- Faculty of Veterinary Medicine, University of Calgary, Calgary, AB, T2N 4N1, Canada
| | - John J Wiens
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, 85721, USA
| | - Daniel S Moen
- Department of Integrative Biology, Oklahoma State University, Stillwater, OK, 74078, USA.
- Department of Evolution, Ecology, and Organismal Biology, University of California, Riverside, CA, 92521, USA.
| |
Collapse
|
7
|
Spaulding F, McLaughlin JF, Cheek RG, McCracken KG, Glenn TC, Winker K. Population genomics indicate three different modes of divergence and speciation with gene flow in the green-winged teal duck complex. Mol Phylogenet Evol 2023; 182:107733. [PMID: 36801373 PMCID: PMC10092703 DOI: 10.1016/j.ympev.2023.107733] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2021] [Revised: 01/31/2023] [Accepted: 02/09/2023] [Indexed: 02/18/2023]
Abstract
The processes leading to divergence and speciation can differ broadly among taxa with different life histories. We examine these processes in a small clade of ducks with historically uncertain relationships and species limits. The green-winged teal (Anas crecca) complex is a Holarctic species of dabbling duck currently categorized as three subspecies (Anas crecca crecca, A. c. nimia, and A. c. carolinensis) with a close relative, the yellow-billed teal (Anas flavirostris) from South America. A. c. crecca and A. c. carolinensis are seasonal migrants, while the other taxa are sedentary. We examined divergence and speciation patterns in this group, determining their phylogenetic relationships and the presence and levels of gene flow among lineages using both mitochondrial and genome-wide nuclear DNA obtained from 1,393 ultraconserved element (UCE) loci. Phylogenetic relationships using nuclear DNA among these taxa showed A. c. crecca, A. c. nimia, and A. c. carolinensis clustering together to form one polytomous clade, with A. flavirostris sister to this clade. This relationship can be summarized as (crecca, nimia, carolinensis)(flavirostris). However, whole mitogenomes revealed a different phylogeny: (crecca, nimia)(carolinensis, flavirostris). The best demographic model for key pairwise comparisons supported divergence with gene flow as the probable speciation mechanism in all three contrasts (crecca-nimia, crecca-carolinensis, and carolinensis-flavirostris). Given prior work, gene flow was expected among the Holarctic taxa, but gene flow between North American carolinensis and South American flavirostris (M ∼0.1-0.4 individuals/generation), albeit low, was not expected. Three geographically oriented modes of divergence are likely involved in the diversification of this complex: heteropatric (crecca-nimia), parapatric (crecca-carolinensis), and (mostly) allopatric (carolinensis-flavirostris). Our study shows that ultraconserved elements are a powerful tool for simultaneously studying systematics and population genomics in systems with historically uncertain relationships and species limits.
Collapse
Affiliation(s)
- Fern Spaulding
- University of Alaska Museum, University of Alaska Fairbanks, Fairbanks, AK, USA; Department of Biology and Wildlife, University of Alaska Fairbanks, Fairbanks, AK, USA.
| | - Jessica F McLaughlin
- Department of Environmental Science, Policy, and Management, University of California Berkeley, Berkeley, CA, USA
| | - Rebecca G Cheek
- Graduate Degree Program in Ecology, Department of Biology, Colorado State University, Fort Collins, CO, USA
| | - Kevin G McCracken
- University of Alaska Museum, University of Alaska Fairbanks, Fairbanks, AK, USA; Department of Biology, University of Miami, Coral Gables, FL, USA
| | - Travis C Glenn
- Department of Environmental Health Science, University of Georgia, Athens, GA, USA
| | - Kevin Winker
- University of Alaska Museum, University of Alaska Fairbanks, Fairbanks, AK, USA; Department of Biology and Wildlife, University of Alaska Fairbanks, Fairbanks, AK, USA
| |
Collapse
|
8
|
Barreto E, Lim MCW, Rojas D, Dávalos LM, Wüest RO, Machac A, Graham CH. Morphology and niche evolution influence hummingbird speciation rates. Proc Biol Sci 2023; 290:20221793. [PMID: 37072043 PMCID: PMC10113027 DOI: 10.1098/rspb.2022.1793] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2022] [Accepted: 03/21/2023] [Indexed: 04/20/2023] Open
Abstract
How traits affect speciation is a long-standing question in evolution. We investigate whether speciation rates are affected by the traits themselves or by the rates of their evolution, in hummingbirds, a clade with great variation in speciation rates, morphology and ecological niches. Further, we test two opposing hypotheses, postulating that speciation rates are promoted by trait conservatism or, alternatively, by trait divergence. To address these questions, we analyse morphological (body mass and bill length) and niche traits (temperature and precipitation position and breadth, and mid-elevation), using a variety of methods to estimate speciation rates and correlate them with traits and their evolutionary rates. When it comes to the traits, we find faster speciation in smaller hummingbirds with shorter bills, living at higher elevations and experiencing greater temperature ranges. As for the trait evolutionary rates, we find that speciation increases with rates of divergence in the niche traits, but not in the morphological traits. Together, these results reveal the interplay of mechanisms through which different traits and their evolutionary rates (conservatism or divergence) influence the origination of hummingbird diversity.
Collapse
Affiliation(s)
- Elisa Barreto
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Zürcherstrasse 111, 8903 Birmensdorf, Switzerland
- Departamento de Ecologia, Universidade Federal de Goiás, Campus Samambaia, Goiânia, Goiás, Brazil
| | - Marisa C. W. Lim
- Department of Ecology and Evolution, Stony Brook University, 650 Life Sciences Building, Stony Brook, NY 11794, USA
| | - Danny Rojas
- Department of Natural Sciences and Mathematics, Pontificia Universidad Javeriana Cali, Cl. 18 #118-250, Cali, Valle del Cauca, Colombia
| | - Liliana M. Dávalos
- Department of Ecology and Evolution, Stony Brook University, 650 Life Sciences Building, Stony Brook, NY 11794, USA
- Consortium for Inter-Disciplinary Environmental Research, Stony Brook University, 129 Dana Hall, Stony Brook, NY 11794, USA
| | - Rafael O. Wüest
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Zürcherstrasse 111, 8903 Birmensdorf, Switzerland
| | - Antonin Machac
- Villum Center for Global Mountain Biodiversity and Center for Macroecology, Evolution and Climate, GLOBE Institute, University of Copenhagen, Universitetsparken 15, 2100 Copenhagen, Denmark
- Center for Theoretical Study, Charles University and the Czech Academy of Science, Jilska 1, 11000 Prague, Czechia
- Department of Ecology, Charles University, Vinicna 7, 12844 Prague, Czechia
| | - Catherine H. Graham
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Zürcherstrasse 111, 8903 Birmensdorf, Switzerland
- Department of Ecology and Evolution, Stony Brook University, 650 Life Sciences Building, Stony Brook, NY 11794, USA
| |
Collapse
|
9
|
Friedman ST, Muñoz MM. A latitudinal gradient of deep-sea invasions for marine fishes. Nat Commun 2023; 14:773. [PMID: 36774385 PMCID: PMC9922314 DOI: 10.1038/s41467-023-36501-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2021] [Accepted: 02/03/2023] [Indexed: 02/13/2023] Open
Abstract
Although the tropics harbor the greatest species richness globally, recent work has demonstrated that, for many taxa, speciation rates are faster at higher latitudes. Here, we explore lability in oceanic depth as a potential mechanism for this pattern in the most biodiverse vertebrates - fishes. We demonstrate that clades with the highest speciation rates also diversify more rapidly along the depth gradient, drawing a fundamental link between evolutionary and ecological processes on a global scale. Crucially, these same clades also inhabit higher latitudes, creating a prevailing latitudinal gradient of deep-sea invasions concentrated in poleward regions. We interpret these findings in the light of classic ecological theory, unifying the latitudinal variation of oceanic features and the physiological tolerances of the species living there. This work advances the understanding of how niche lability sculpts global patterns of species distributions and underscores the vulnerability of polar ecosystems to changing environmental conditions.
Collapse
Affiliation(s)
- Sarah T Friedman
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, 06511, USA. .,Yale Institute for Biospheric Studies, Yale University, New Haven, CT, 06511, USA.
| | - Martha M Muñoz
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, 06511, USA
| |
Collapse
|
10
|
Iglesias‐Carrasco M, Tobias JA, Duchêne DA. Bird lineages colonizing urban habitats have diversified at high rates across deep time. GLOBAL ECOLOGY AND BIOGEOGRAPHY : A JOURNAL OF MACROECOLOGY 2022; 31:1784-1793. [PMID: 36246452 PMCID: PMC9540638 DOI: 10.1111/geb.13558] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/06/2021] [Revised: 05/27/2022] [Accepted: 05/31/2022] [Indexed: 06/16/2023]
Abstract
Aim Urbanization exposes species to novel ecological conditions. Some species thrive in urban areas, whereas many others are excluded from these human-made environments. Previous analyses suggest that the ability to cope with rapid environmental change is associated with long-term patterns of diversification, but whether the suite of traits associated with the ability to colonize urban environments is linked to this process remains poorly understood. Location World. Time period Current. Major taxa studied Passerine birds. Methods We applied macroevolutionary models to a large dataset of passerine birds to compare the evolutionary history of urban-tolerant species with that of urban-avoidant species. Specifically, we examined models of state-dependent speciation and extinction to assess the macroevolution of urban tolerance as a binary trait, in addition to models of quantitative trait-dependent diversification based on relative urban abundance. We also ran simulation-based model assessments to explore potential sources of bias. Results We provide evidence that historically, species with traits promoting urban colonization have undergone faster diversification than urban-avoidant species, indicating that urbanization favours clades with a historical tendency towards rapid speciation or reduced extinction. In addition, we find that past transitions towards states that currently impede urban colonization by passerines have been more frequent than in the opposite direction. Furthermore, we find a portion of urban-avoidant passerines to be recent and to undergo fast diversification. All highly supported models give this result consistently. Main conclusions Urbanization is mainly associated with the loss of lineages that are inherently more vulnerable to extinction over deep time, whereas cities tend to be colonized by less vulnerable lineages, for which urbanization might be neutral or positive in terms of longer-term diversification. Urban avoidance is associated with high rates of recent diversification for some clades occurring in regions with relatively intact natural ecosystems and low current levels of urbanization.
Collapse
Affiliation(s)
| | | | - David A. Duchêne
- Centre for Evolutionary HologenomicsUniversity of CopenhagenCopenhagenDenmark
| |
Collapse
|
11
|
Zhang Q, Ree RH, Salamin N, Xing Y, Silvestro D. Fossil-Informed Models Reveal a Boreotropical Origin and Divergent Evolutionary Trajectories in the Walnut Family (Juglandaceae). Syst Biol 2021; 71:242-258. [PMID: 33964165 PMCID: PMC8677545 DOI: 10.1093/sysbio/syab030] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2020] [Revised: 05/03/2021] [Accepted: 05/03/2021] [Indexed: 12/12/2022] Open
Abstract
Temperate woody plants in the Northern Hemisphere have long been known to exhibit high species richness in East Asia and North America and significantly lower diversity in Europe, but the causes of this pattern remain debated. Here, we quantify the roles of dispersal, niche evolution, and extinction in shaping the geographic diversity of the temperate woody plant family Juglandaceae (walnuts and their relatives). Integrating evidence from molecular, morphological, fossil, and (paleo)environmental data, we find strong support for a Boreotropical origin of the family with contrasting evolutionary trajectories between the temperate subfamily Juglandoideae and the tropical subfamily Engelhardioideae. Juglandoideae rapidly evolved frost tolerance when the global climate shifted to ice-house conditions from the Oligocene, with diversification at high latitudes especially in Europe and Asia during the Miocene. Subsequent range contraction at high latitudes and high levels of extinction in Europe driven by global cooling led to the current regional disparity in species diversity. Engelhardioideae showed temperature conservatism while adapting to increased humidity, tracking tropical climates to low latitudes since the middle Eocene with comparatively little diversification, perhaps due to high competition in the tropical zone. The biogeographic history of Juglandaceae shows that the North Atlantic land bridge and Europe played more critical roles than previously thought in linking the floras of East Asia and North America, and showcases the complex interplay among climate change, niche evolution, dispersal, and extinction that shaped the modern disjunct pattern of species richness in temperate woody plants. [Boreotropical origin; climatic niche evolution; disjunct distribution; dispersal; diversity anomaly; extinction; Juglandaceae.].
Collapse
Affiliation(s)
- Qiuyue Zhang
- Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, 666303 Mengla, China
- Department of Biology, University of Fribourg, 1700 Fribourg, Switzerland
- Department of Computational Biology, University of Lausanne, 1015 Lausanne, Switzerland
- College of Resources and Environment, University of Chinese Academy of Sciences, 100049 Beijing, China
| | - Richard H Ree
- Life Sciences Section, Negaunee Integrative Research Center, Field Museum, Chicago, IL, 60605, USA
| | - Nicolas Salamin
- Department of Computational Biology, University of Lausanne, 1015 Lausanne, Switzerland
| | - Yaowu Xing
- Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, 666303 Mengla, China
- Center of Plant Ecology, Core Botanical Gardens, Chinese Academy of Sciences, 666303 Mengla, China
| | - Daniele Silvestro
- Department of Biology, University of Fribourg, 1700 Fribourg, Switzerland
- Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland
| |
Collapse
|
12
|
Hernández-Hernández T, Miller EC, Román-Palacios C, Wiens JJ. Speciation across the Tree of Life. Biol Rev Camb Philos Soc 2021; 96:1205-1242. [PMID: 33768723 DOI: 10.1111/brv.12698] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2019] [Revised: 02/13/2021] [Accepted: 02/16/2021] [Indexed: 01/04/2023]
Abstract
Much of what we know about speciation comes from detailed studies of well-known model systems. Although there have been several important syntheses on speciation, few (if any) have explicitly compared speciation among major groups across the Tree of Life. Here, we synthesize and compare what is known about key aspects of speciation across taxa, including bacteria, protists, fungi, plants, and major animal groups. We focus on three main questions. Is allopatric speciation predominant across groups? How common is ecological divergence of sister species (a requirement for ecological speciation), and on what niche axes do species diverge in each group? What are the reproductive isolating barriers in each group? Our review suggests the following patterns. (i) Based on our survey and projected species numbers, the most frequent speciation process across the Tree of Life may be co-speciation between endosymbiotic bacteria and their insect hosts. (ii) Allopatric speciation appears to be present in all major groups, and may be the most common mode in both animals and plants, based on non-overlapping ranges of sister species. (iii) Full sympatry of sister species is also widespread, and may be more common in fungi than allopatry. (iv) Full sympatry of sister species is more common in some marine animals than in terrestrial and freshwater ones. (v) Ecological divergence of sister species is widespread in all groups, including ~70% of surveyed species pairs of plants and insects. (vi) Major axes of ecological divergence involve species interactions (e.g. host-switching) and habitat divergence. (vii) Prezygotic isolation appears to be generally more widespread and important than postzygotic isolation. (viii) Rates of diversification (and presumably speciation) are strikingly different across groups, with the fastest rates in plants, and successively slower rates in animals, fungi, and protists, with the slowest rates in prokaryotes. Overall, our study represents an initial step towards understanding general patterns in speciation across all organisms.
Collapse
Affiliation(s)
- Tania Hernández-Hernández
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, 85721-0088, U.S.A.,Catedrática CONACYT asignada a LANGEBIO-UGA Cinvestav, Libramiento Norte Carretera León Km 9.6, 36821, Irapuato, Guanajuato, Mexico
| | - Elizabeth C Miller
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, 85721-0088, U.S.A
| | - Cristian Román-Palacios
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, 85721-0088, U.S.A
| | - John J Wiens
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, 85721-0088, U.S.A
| |
Collapse
|
13
|
Eyres A, Eronen JT, Hagen O, Böhning-Gaese K, Fritz SA. Climatic effects on niche evolution in a passerine bird clade depend on paleoclimate reconstruction method. Evolution 2021; 75:1046-1060. [PMID: 33724456 DOI: 10.1111/evo.14209] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2019] [Revised: 01/29/2021] [Accepted: 02/12/2021] [Indexed: 01/08/2023]
Abstract
Climatic niches describe the climatic conditions in which species can persist. Shifts in climatic niches have been observed to coincide with major climatic change, suggesting that species adapt to new conditions. We test the relationship between rates of climatic niche evolution and paleoclimatic conditions through time for 65 Old-World flycatcher species (Aves: Muscicapidae). We combine niche quantification for all species with dated phylogenies to infer past changes in the rates of niche evolution for temperature and precipitation niches. Paleoclimatic conditions were inferred independently using two datasets: a paleoelevation reconstruction and the mammal fossil record. We find changes in climatic niches through time, but no or weak support for a relationship between niche evolution rates and rates of paleoclimatic change for both temperature and precipitation niche and for both reconstruction methods. In contrast, the inferred relationship between climatic conditions and niche evolution rates depends on paleoclimatic reconstruction method: rates of temperature niche evolution are significantly negatively related to absolute temperatures inferred using the paleoelevation model but not those reconstructed from the fossil record. We suggest that paleoclimatic change might be a weak driver of climatic niche evolution in birds and highlight the need for greater integration of different paleoclimate reconstructions.
Collapse
Affiliation(s)
- Alison Eyres
- Senckenberg Biodiversity and Climate Research Centre, Frankfurt, 60325, Germany.,Department of Biological Sciences, Goethe University Frankfurt, Frankfurt, 60438, Germany.,RSPB Centre for Conservation Science, Cambridge, CB2 3QZ, United Kingdom
| | - Jussi T Eronen
- Ecosystems and Environment Research Program and Helsinki Institute of Sustainability Science (HELSUS), Faculty of Biological and Environmental Sciences, University of Helsinki, Helsinki, 00014, Finland.,BIOS Research Unit, Helsinki, 00170, Finland
| | - Oskar Hagen
- Landscape Ecology, Institute of Terrestrial Ecosystems, D-USYS, ETH Zürich, Zürich, CH-8092, Switzerland.,Swiss Federal Research Institute WSL, Birmensdorf, CH-8903, Switzerland
| | - Katrin Böhning-Gaese
- Senckenberg Biodiversity and Climate Research Centre, Frankfurt, 60325, Germany.,Department of Biological Sciences, Goethe University Frankfurt, Frankfurt, 60438, Germany
| | - Susanne A Fritz
- Senckenberg Biodiversity and Climate Research Centre, Frankfurt, 60325, Germany.,Department of Biological Sciences, Goethe University Frankfurt, Frankfurt, 60438, Germany.,Institut für Geowissenschaften, Goethe University Frankfurt, Frankfurt, 60438, Germany
| |
Collapse
|
14
|
Tobias JA, Ottenburghs J, Pigot AL. Avian Diversity: Speciation, Macroevolution, and Ecological Function. ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS 2020. [DOI: 10.1146/annurev-ecolsys-110218-025023] [Citation(s) in RCA: 45] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
The origin, distribution, and function of biological diversity are fundamental themes of ecology and evolutionary biology. Research on birds has played a major role in the history and development of these ideas, yet progress was for many decades limited by a focus on patterns of current diversity, often restricted to particular clades or regions. Deeper insight is now emerging from a recent wave of integrative studies combining comprehensive phylogenetic, environmental, and functional trait data at unprecedented scales. We review these empirical advances and describe how they are reshaping our understanding of global patterns of bird diversity and the processes by which it arises, with implications for avian biogeography and functional ecology. Further expansion and integration of data sets may help to resolve longstanding debates about the evolutionary origins of biodiversity and offer a framework for understanding and predicting the response of ecosystems to environmental change.
Collapse
Affiliation(s)
- Joseph A. Tobias
- Department of Life Sciences, Imperial College London, Silwood Park, Ascot SL5 7PY, United Kingdom
| | - Jente Ottenburghs
- Department of Evolutionary Biology, Uppsala University, 752 36 Uppsala, Sweden
| | - Alex L. Pigot
- Centre for Biodiversity and Environment Research, Department of Genetics, Evolution and Environment, University College London, London WC1E 6BT, United Kingdom
| |
Collapse
|
15
|
Heterogeneous relationships between rates of speciation and body size evolution across vertebrate clades. Nat Ecol Evol 2020; 5:101-110. [PMID: 33106601 DOI: 10.1038/s41559-020-01321-y] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2019] [Accepted: 09/04/2020] [Indexed: 01/09/2023]
Abstract
Several theories predict that rates of phenotypic evolution should be related to the rate at which new lineages arise. However, drawing general conclusions regarding the coupling between these fundamental evolutionary rates has been difficult due to the inconsistent nature of previous results combined with uncertainty over the most appropriate methodology with which to investigate such relationships. Here we propose and compare the performance of several different approaches for testing associations between lineage-specific rates of speciation and phenotypic evolution using phylogenetic data. We then use the best-performing method to test relationships between rates of speciation and body size evolution in five major vertebrate clades (amphibians, birds, mammals, ray-finned fish and squamate reptiles) at two phylogenetic scales. Our results provide support for the long-standing view that rates of speciation and morphological evolution are generally positively related at broad macroevolutionary scales, but they also reveal a substantial degree of heterogeneity in the strength and direction of these associations at finer scales across the vertebrate tree of life.
Collapse
|
16
|
Qu YF, Wiens JJ. Higher temperatures lower rates of physiological and niche evolution. Proc Biol Sci 2020; 287:20200823. [PMID: 32673554 DOI: 10.1098/rspb.2020.0823] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Abstract
Understanding rates and patterns of change in physiological and climatic-niche variables is of urgent importance as many species are increasingly threatened by rising global temperatures. Here, we broadly test several fundamental hypotheses about physiological and niche evolution for the first time (with appropriate phylogenetic methods), using published data from 2059 vertebrate species. Our main results show that: (i) physiological tolerances to heat evolve more slowly than those to cold, (ii) the hottest climatic-niche temperatures change more slowly than the coldest climatic-niche temperatures, and (iii) physiological tolerances to heat and cold evolve more slowly than the corresponding climatic-niche variables. Physiological tolerances are significantly and positively related to the corresponding climatic-niche variables, but species often occur in climates outside the range of these tolerances. However, mismatches between climate and physiology do not necessarily mean that the climatic-niche data are misleading. Instead, some standard physiological variables used in vertebrates (i.e. critical thermal maxima and minima) may reflect when species are active (daily, seasonally) and their local-scale microhabitats (sun versus shade), rather than their large-scale climatic distributions.
Collapse
Affiliation(s)
- Yan-Fu Qu
- Jiangsu Key Laboratory for Biodiversity and Biotechnology, College of Life Sciences, Nanjing Normal University, Nanjing 210023, Jiangsu, People's Republic of China.,Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721, USA
| | - John J Wiens
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721, USA
| |
Collapse
|
17
|
Climatic-niche evolution follows similar rules in plants and animals. Nat Ecol Evol 2020; 4:753-763. [PMID: 32203479 DOI: 10.1038/s41559-020-1158-x] [Citation(s) in RCA: 32] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2019] [Accepted: 02/24/2020] [Indexed: 12/24/2022]
Abstract
Climatic niches are essential in determining where species can occur and how they will respond to climate change. However, it remains unclear if climatic-niche evolution is similar in plants and animals or is intrinsically different. For example, previous authors have proposed that plants have broader environmental tolerances than animals but are more sensitive to climate change. Here, we test ten predictions about climatic-niche evolution in plants and animals, using phylogenetic and climatic data for 19 plant clades and 17 vertebrate clades (2,087 species total). Surprisingly, we find that for all ten predictions, plants and animals show similar patterns. For example, in both groups, climatic niches change at similar mean rates and species have similar mean niche breadths, and niche breadths show similar relationships with latitude across groups. Our results suggest that there are general 'rules' of climatic-niche evolution that span plants and animals, despite the fundamental differences in their biology. These results may help to explain why plants and animals have similar responses to climate change and why they often have shared species richness patterns, biogeographic regions, biomes and biodiversity hotspots.
Collapse
|
18
|
Medina I. The role of the environment in the evolution of nest shape in Australian passerines. Sci Rep 2019; 9:5560. [PMID: 30944374 PMCID: PMC6447541 DOI: 10.1038/s41598-019-41948-x] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2018] [Accepted: 03/21/2019] [Indexed: 11/30/2022] Open
Abstract
Avian nests present great variation in structure but, after excluding cavity nesters, probably the most obvious difference is that between open and domed nests. Some species lay their eggs in open structures, exposed to environmental variables, while other species build domed, enclosed nests with a roof, which are suggested to protect eggs and nestlings from weather conditions, high radiation levels, and predation. To date it is unclear which variables drove the evolution of different nest types. In this study, environmental and nest type information was extracted for continental Australian passerines, showing that species with open and closed nests are distributed in similar climates. However, species with open nests have larger ranges and are distributed in a wider variety of climatic conditions, suggesting open nests could be an evolutionary key innovation. This analysis was complemented with a detailed study of the evolution of particular nest traits in the largest Australasian avian radiation (Meliphagoidea), confirming that adult body size - but not environment - is an important factor in nest architecture, and larger species tend to build nests that are shallow and supported from underneath. Nest structure is a multidimensional trait that has probably evolved to match the phenotype of the nest owner, but that could also constrain or facilitate establishment in different environments.
Collapse
Affiliation(s)
- Iliana Medina
- School of BioSciences, University of Melbourne, Parkville, 3010, VIC, Australia.
| |
Collapse
|
19
|
Gray LN, Barley AJ, Poe S, Thomson RC, Nieto‐Montes de Oca A, Wang IJ. Phylogeography of a widespread lizard complex reflects patterns of both geographic and ecological isolation. Mol Ecol 2019; 28:644-657. [DOI: 10.1111/mec.14970] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2017] [Revised: 10/24/2018] [Accepted: 11/05/2018] [Indexed: 01/18/2023]
Affiliation(s)
- Levi N. Gray
- Department of Biology and Museum of Southwestern Biology University of New Mexico Albuquerque New Mexico
| | - Anthony J. Barley
- Department of Biology University of Hawai’i at Mānoa Honolulu Hawaii
| | - Steven Poe
- Department of Biology and Museum of Southwestern Biology University of New Mexico Albuquerque New Mexico
| | - Robert C. Thomson
- Department of Biology University of Hawai’i at Mānoa Honolulu Hawaii
| | - Adrián Nieto‐Montes de Oca
- Departamento de Biología Evolutiva, Facultad de Ciencias Universidad Nacional Autónoma de México México México
| | - Ian J. Wang
- Department of Environmental Science, Policy, and Management University of California Berkeley California
| |
Collapse
|
20
|
Eberle J, Dimitrov D, Valdez-Mondragón A, Huber BA. Microhabitat change drives diversification in pholcid spiders. BMC Evol Biol 2018; 18:141. [PMID: 30231864 PMCID: PMC6145181 DOI: 10.1186/s12862-018-1244-8] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2018] [Accepted: 08/16/2018] [Indexed: 02/04/2023] Open
Abstract
BACKGROUND Microhabitat changes are thought to be among the main drivers of diversification. However, this conclusion is mostly based on studies on vertebrates. Here, we investigate the influence of microhabitat on diversification rates in pholcid spiders (Araneae, Pholcidae). Diversification analyses were conducted in the framework of the largest molecular phylogeny of pholcid spiders to date based on three nuclear and three mitochondrial loci from 600 species representing more than 85% of the currently described pholcid genera. RESULTS Assessments of ancestral microhabitat revealed frequent evolutionary change. In particular, within the largest subfamily Pholcinae, numerous changes from near-ground habitats towards leaves and back were found. In general, taxa occupying leaves and large sheltered spaces had higher diversification rates than ground-dwelling taxa. Shifts in speciation rate were found in leaf- and space-dwelling taxa. CONCLUSIONS Our analyses result in one of the most comprehensive phylogenies available for a major spider family and provide a framework for any subsequent studies of pholcid spider biology. Diversification analyses strongly suggest that microhabitat is an important factor influencing diversification patterns in pholcid spiders.
Collapse
Affiliation(s)
- Jonas Eberle
- Alexander Koenig Research Museum of Zoology, Adenauerallee 160, 53113 Bonn, Germany
| | - Dimitar Dimitrov
- Center for Macroecology, Evolution and Climate, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark
- Natural History Museum, University of Oslo, PO Box 1172 Blindern, NO-0318 Oslo, Norway
- Department of Natural History, University Museum of Bergen, University of Bergen, PO Box 7800, NO-5020 Bergen, Norway
| | - Alejandro Valdez-Mondragón
- Alexander Koenig Research Museum of Zoology, Adenauerallee 160, 53113 Bonn, Germany
- Instituto de Biologia UNAM, sede Tlaxcala. Contiguo FES-Zaragoza Campus III, Ex Fábrica San Manuel de Morcom s/n, San Miguel Contla, Municipio de Santa Cruz Tlaxcala, C.P, 90640 Tlaxcala, Mexico
| | - Bernhard A. Huber
- Alexander Koenig Research Museum of Zoology, Adenauerallee 160, 53113 Bonn, Germany
| |
Collapse
|
21
|
Greenberg DA, Palen WJ, Chan KC, Jetz W, Mooers AØ. Evolutionarily distinct amphibians are disproportionately lost from human-modified ecosystems. Ecol Lett 2018; 21:1530-1540. [PMID: 30133091 DOI: 10.1111/ele.13133] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2018] [Revised: 05/23/2018] [Accepted: 07/04/2018] [Indexed: 01/09/2023]
Abstract
Humans continue to alter terrestrial ecosystems, but our understanding of how biodiversity responds is still limited. Anthropogenic habitat conversion has been associated with the loss of evolutionarily distinct bird species at local scales, but whether this evolutionary pattern holds across other clades is unknown. We collate a global dataset on amphibian assemblages in intact forests and nearby human-modified sites to assess whether evolutionary history influences susceptibility to land conversion. We found that evolutionarily distinct amphibian species are disproportionately lost when forested habitats are converted to alternative land-uses. We tested the hypothesis that grassland-associated amphibian lineages have both higher diversification and are pre-adapted to human landscapes, but found only weak evidence supporting this. The loss of evolutionarily distinct amphibians with land conversion suggests that preserving remnant forests will be vital if we aim to preserve the amphibian tree of life in the face of mounting anthropogenic pressures.
Collapse
Affiliation(s)
- D A Greenberg
- Department of Biological Sciences, Simon Fraser University, Burnaby, BC, Canada
| | - W J Palen
- Department of Biological Sciences, Simon Fraser University, Burnaby, BC, Canada
| | - K C Chan
- Department of Biological Sciences, Simon Fraser University, Burnaby, BC, Canada
| | - W Jetz
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, USA
| | - A Ø Mooers
- Department of Biological Sciences, Simon Fraser University, Burnaby, BC, Canada
| |
Collapse
|
22
|
Castro-Insua A, Gómez-Rodríguez C, Wiens JJ, Baselga A. Climatic niche divergence drives patterns of diversification and richness among mammal families. Sci Rep 2018; 8:8781. [PMID: 29884843 PMCID: PMC5993713 DOI: 10.1038/s41598-018-27068-y] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2017] [Accepted: 05/24/2018] [Indexed: 11/20/2022] Open
Abstract
A major goal of evolutionary biology is to understand why clades differ dramatically in species richness. A key to this challenge is to uncover the correlates of variation in diversification rate (speciation – extinction) among clades. Here, we explore the relationship between diversification rates and the climatic niches of species and clades among 92 families of terrestrial mammals. We use a time-calibrated molecular phylogeny of mammals and climatic data from 3335 species. We show that considerable variation in net diversification rates among mammal families is explained by niche divergence (59%) and rates of niche change (51%). Diversification rates in turn explain most variation in species richness among families (79%). Contrary to expectations, patterns of diversification are not explained by differences in geographic range areas of clades, nor by their climatic niche position (i.e. whether they are primarily tropical or temperate). Overall, these results suggest that speciation through climatic niche divergence may help drive large-scale patterns of diversification and richness. Our results help explain diversification patterns in a major clade of vertebrates, and suggest that similar underlying principles may explain the diversification of many terrestrial clades.
Collapse
Affiliation(s)
- Adrián Castro-Insua
- Departamento de Zoología, Facultad de Biología, Universidad de Santiago de Compostela, Rúa Lope Gómez de Marzoa, 15782, Santiago de Compostela, Spain.
| | - Carola Gómez-Rodríguez
- Departamento de Zoología, Facultad de Biología, Universidad de Santiago de Compostela, Rúa Lope Gómez de Marzoa, 15782, Santiago de Compostela, Spain
| | - John J Wiens
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, 85721-0088, USA
| | - Andrés Baselga
- Departamento de Zoología, Facultad de Biología, Universidad de Santiago de Compostela, Rúa Lope Gómez de Marzoa, 15782, Santiago de Compostela, Spain
| |
Collapse
|
23
|
Jezkova T, Wiens JJ. Testing the role of climate in speciation: New methods and applications to squamate reptiles (lizards and snakes). Mol Ecol 2018; 27:2754-2769. [DOI: 10.1111/mec.14717] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2017] [Accepted: 04/17/2018] [Indexed: 10/16/2022]
Affiliation(s)
- Tereza Jezkova
- Department of Ecology and Evolutionary Biology University of Arizona Tucson Arizona
- Department of Biology Miami University Oxford Ohio
| | - John J. Wiens
- Department of Ecology and Evolutionary Biology University of Arizona Tucson Arizona
| |
Collapse
|
24
|
García-Navas V, Rodríguez-Rey M. The Evolution of Climatic Niches and its Role in Shaping Diversity Patterns in Diprotodontid Marsupials. J MAMM EVOL 2018. [DOI: 10.1007/s10914-018-9435-z] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
|
25
|
Pie MR, Campos LLF, Meyer ALS, Duran A. The evolution of climatic niches in squamate reptiles. Proc Biol Sci 2018; 284:rspb.2017.0268. [PMID: 28679723 DOI: 10.1098/rspb.2017.0268] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2017] [Accepted: 06/01/2017] [Indexed: 11/12/2022] Open
Abstract
Despite the remarkable diversity found in squamate reptiles, most of their species tend to be found in warm/dry environments, suggesting that climatic requirements played a crucial role in their diversification, yet little is known about the evolution of their climatic niches. In this study, we integrate climatic information associated with the geographical distribution of 1882 squamate species and their phylogenetic relationships to investigate the tempo and mode of climatic niche evolution in squamates, both over time and among lineages. We found that changes in climatic niche dynamics were pronounced over their recent squamate evolutionary history, and we identified extensive evidence for rate heterogeneity in squamate climatic niche evolution. Most rate shifts involved accelerations, particularly over the past 50 Myr. Most squamates occupy similar regions of the climatic niche space, with only a few lineages diversifying into colder and humid climatic conditions. The changes from arid to mesic conditions in some regions of the globe may have provided opportunities for climatic niche evolution, although most lineages tended to remain near their ancestral niche. Variation in rates of climatic niche evolution seems common, particularly in response to the availability of new climatic conditions over evolutionary time.
Collapse
Affiliation(s)
- Marcio R Pie
- Departamento de Zoologia, Universidade Federal do Paraná, Curitiba, Paraná, Brazil .,Programa de Pós-Graduação em Zoologia, Universidade Federal do Paraná, CEP 81531-990 Curitiba, Paraná, Brazil.,Programa de Pós-Graduação em Ecologia e Conservação, Universidade Federal do Paraná, CEP 81531-990 Curitiba, Paraná, Brazil
| | - Leonardo L F Campos
- Departamento de Zoologia, Universidade Federal do Paraná, Curitiba, Paraná, Brazil
| | - Andreas L S Meyer
- Departamento de Zoologia, Universidade Federal do Paraná, Curitiba, Paraná, Brazil.,Programa de Pós-Graduação em Zoologia, Universidade Federal do Paraná, CEP 81531-990 Curitiba, Paraná, Brazil
| | - Andressa Duran
- Departamento de Zoologia, Universidade Federal do Paraná, Curitiba, Paraná, Brazil.,Programa de Pós-Graduação em Ecologia e Conservação, Universidade Federal do Paraná, CEP 81531-990 Curitiba, Paraná, Brazil
| |
Collapse
|
26
|
|
27
|
Seeholzer GF, Brumfield RT. Isolation by distance, not incipient ecological speciation, explains genetic differentiation in an Andean songbird (Aves: Furnariidae:
Cranioleuca antisiensis,
Line‐cheeked Spinetail) despite near threefold body size change across an environmental gradient. Mol Ecol 2017; 27:279-296. [DOI: 10.1111/mec.14429] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2017] [Revised: 10/18/2017] [Accepted: 11/02/2017] [Indexed: 12/14/2022]
Affiliation(s)
- Glenn F. Seeholzer
- Museum of Natural Science and Department of Biological Sciences Louisiana State University Baton Rouge LA USA
| | - Robb T. Brumfield
- Museum of Natural Science and Department of Biological Sciences Louisiana State University Baton Rouge LA USA
| |
Collapse
|
28
|
Meyer ALS, Wiens JJ. Estimating diversification rates for higher taxa: BAMM can give problematic estimates of rates and rate shifts. Evolution 2017; 72:39-53. [DOI: 10.1111/evo.13378] [Citation(s) in RCA: 68] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2016] [Revised: 10/03/2017] [Accepted: 10/04/2017] [Indexed: 01/22/2023]
Affiliation(s)
- Andreas L. S. Meyer
- Graduate Program in Zoology Universidade Federal do Paraná Curitiba Paraná 81531 Brazil
- Department of Ecology and Evolution University of Arizona Tucson Arizona 85721
| | - John J. Wiens
- Department of Ecology and Evolution University of Arizona Tucson Arizona 85721
| |
Collapse
|
29
|
Bars-Closel M, Kohlsdorf T, Moen DS, Wiens JJ. Diversification rates are more strongly related to microhabitat than climate in squamate reptiles (lizards and snakes). Evolution 2017; 71:2243-2261. [DOI: 10.1111/evo.13305] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2017] [Revised: 05/02/2017] [Accepted: 07/04/2017] [Indexed: 12/24/2022]
Affiliation(s)
- Melissa Bars-Closel
- Department of Biology, FFCLRP; University of São Paulo; Avenida Bandeirantes, 3900, Bairro Monte Alegre Ribeirão Preto São Paulo Brazil
- Department of Ecology and Evolutionary Biology; University of Arizona; Tucson Arizona 85721
| | - Tiana Kohlsdorf
- Department of Biology, FFCLRP; University of São Paulo; Avenida Bandeirantes, 3900, Bairro Monte Alegre Ribeirão Preto São Paulo Brazil
| | - Daniel S. Moen
- Department of Integrative Biology; Oklahoma State University; Stillwater Oklahoma 74078
| | - John J. Wiens
- Department of Ecology and Evolutionary Biology; University of Arizona; Tucson Arizona 85721
| |
Collapse
|
30
|
Moen DS, Wiens JJ. Microhabitat and Climatic Niche Change Explain Patterns of Diversification among Frog Families. Am Nat 2017; 190:29-44. [DOI: 10.1086/692065] [Citation(s) in RCA: 50] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
|
31
|
Mason NA, Burns KJ, Tobias JA, Claramunt S, Seddon N, Derryberry EP. Song evolution, speciation, and vocal learning in passerine birds. Evolution 2017; 71:786-796. [DOI: 10.1111/evo.13159] [Citation(s) in RCA: 69] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2015] [Accepted: 12/17/2016] [Indexed: 01/13/2023]
Affiliation(s)
- Nicholas A. Mason
- Department of Ecology and Evolutionary Biology Cornell University Ithaca New York 14853
- Fuller Evolutionary Biology Program Cornell Lab of Ornithology Ithaca New York 14850
| | - Kevin J. Burns
- Department of Biology San Diego State University San Diego California 92182
| | - Joseph A. Tobias
- Department of Life Sciences Imperial College London Silwood Park Ascot SL5 7PY United Kingdom
| | - Santiago Claramunt
- Department of Ornithology American Museum of Natural History New York New York 10024
| | - Nathalie Seddon
- Edward Grey Institute, Department of Zoology University of Oxford Oxford OX1 3PS United Kingdom
| | - Elizabeth P. Derryberry
- Department of Ecology and Evolutionary Biology Tulane University New Orleans Louisiana 70118
| |
Collapse
|
32
|
Affiliation(s)
- John J. Wiens
- Department of Ecology and Evolutionary Biology; University of Arizona; Tucson AZ USA
| |
Collapse
|