Anammox and beyond

Unveiling the mechanism underlying in-situ enhancement on anammox system by sulfide: Integration of biological and isotope analysis

The in-situ utilization of sulfide to remove the nitrate produced during the anaerobic ammonium oxidation (anammox) process can avoid prolonged sludge acclimatization, facilitating the rapid initiation of coupled nitrogen removal processes. However, the understanding of in-situ enhancement on anammox system by sulfide remains unclear. Herein, sulfide (Na2S) was introduced as an additional electron donor to remove the nitrate derived from the anammox under varying sulfide/nitrogen (S/N, S2--S/NO3--N, molar ratio) ratios (0.004-4.375). The underlying mechanisms were elucidated by molecular biology techniques including flow cytometry, quantitative polymerase chain reaction, and 16S rRNA amplicon sequencing, alongside isotope tracer analysis. Results revealed that anammox reactors, when operated with in-situ sulfide addition, exhibited a significant enhancement in total nitrogen removal efficiency (NRE) ranging from 11.5 %-41.7 % (achieved 96 %), with the optimal S/N ratios of 0.01-0.8. Isotope tracer analysis indicated the successful coupling of the anammox, sulfur autotrophic denitrification (SADN), and dissimilatory nitrate reduction to ammonium (DNRA) processes within the system, with their contributions to nitrogen removal being 46 %-50 %, 24 %-30 %, and 20 %-22 %, respectively. Moreover, a notable increase in the abundance of sulfur-oxidizing bacteria (SOB) (20 %-40 % increase) and DNRA bacteria (10 %-20 % increase) were observed. Effective collaboration was further supported by the sustained viability of microbial communities. It is speculated that the heightened presence of SOB and DNRA bacteria created a low toxicity environment by converting sulfide to biogenic sulfur, thereby promoting the well-being of anammox bacteria. However, the excessive dosage of sulfide (S/N = 1.8) intensified the DNRA process (contribution>35 %) and weakened the anammox process, leading to an increase in effluent NH4+-N concentration and a decline in NRE. This study confirms that the in-situ adding an appropriate amount of sulfide favors achieving complete nitrogen removal in anammox system, which provides a novel avenue to resolve the issue of the residual nitrate in anammox process.

Pure water and resource recovery from municipal wastewater using high-rate activated sludge, reverse osmosis, and mainstream anammox: A pilot scale study

In response to the escalating global water scarcity and the high energy consumption associated with traditional wastewater treatment plants, there is a growing demand for transformative wastewater treatment processes that promise greater efficiency and sustainability. This study presents an innovative approach for municipal wastewater treatment that integrates high-rate activated sludge with membrane bio-reactor (HRAS-MBR), reverse osmosis (RO) and partial nitrification-anammox (PN/A). With an influent of 8.4 m³/d, the HRAS-MBR demonstrated a removal efficiency of approximately 85 % for chemical oxygen demand (COD), with over 70 % of it being recovered for energy production. The RO system achieved a recovery rate of 75 % for the influent, producing pure water with an electrical conductivity of 50 μS/cm. Concurrently, it concentrated ammonia, thereby enhancing the effectiveness of the PN/A process for nitrogen removal in the mainstream, resulting in a removal efficiency exceeding 85 %. Notably, the HRAS-MBR achieved significant phosphorus removal without chemical additives, attributed to the presence of influent calcium and magnesium ions. Overall, this integrated system reduced the net energy consumption for reclaimed water production by about 26 % compared to conventional methods. Additionally, the new process produced a revenue of 0.75 CNY/m³, demonstrating considerable economic and environmental benefits. This pilot-scale study offers a viable alternative for wastewater treatment and water reuse in water-scarce regions, contributing to sustainable water resource management.

Effect of initial ammonium concentration on a one-stage partial nitrification/anammox biofilm system: Nitrogen removal performance and the microbial community

One-stage partial nitrification coupled with anammox (PN/A) technology effectively reduces the energy consumption of a biological nitrogen removal system. Inhibiting nitrite-oxidizing bacteria (NOB) is essential for this technology to maintain efficient nitrogen removal performance. Initial ammonium concentration (IAC) affects the degree of inhibited NOB. In this study, the effect of the IAC on a PN/A biofilm was investigated in a moving bed biofilm reactor. The results showed that nitrogen removal efficiency decreased from 82.49% ± 1.90% to 64.57% ± 3.96% after the IAC was reduced from 60 to 20 mg N/L, while the nitrate production ratio increased from 13.87% ± 0.90% to 26.50% ± 3.76%. NOB activity increased to 1,133.86 mg N/m2/day after the IAC decreased, approximately 4-fold, indicating that the IAC plays an important inhibitory role in NOB. The rate-limiting step in the mature biofilm of the PN/A system is the nitritation process and is not shifted by the IAC. The analysis of the microbial community structure in the biofilm indicates that the IAC was the dominant factor in changes in community structure. Ca. Brocadia and Ca. Jettenia were the main anammox bacteria, and Nitrosomonas and Nitrospira were the main AOB and NOB, respectively. IAC did not affect the difference in growth between Ca. Brocadia and Ca. Jettenia. Thus, modulating the IAC promoted the PN/A process with efficient nitrogen removal performance at medium to low ammonium concentrations.

Enhanced nitrogen removal via partial nitrification/denitrification coupled Anammox using three stage anoxic/oxic biofilm process with intermittent aeration

Pre-capturing organics in municipal wastewater for biogas production, combined with Anammox-based nitrogen removal process, improves the sustainability of sewage treatment. Thus, enhancing nitrogen removal via Anammox in mainstream wastewater treatment becomes very crucial. In present study, a three-stage anoxic/oxic (AO) biofilm process with intermittent aeration was designed to strengthen partial nitrification/denitrification coupling Anammox (PNA/PDA) in treatment of low C/N wastewater, which contained chemical oxygen demand (COD) of 79.8 mg/L and total inorganic nitrogen (TIN) of 58.9 mg/L. With a hydraulic retention time of 8.0 h, the process successfully reduced TIN to 10.6 mg/L, achieving a nitrogen removal efficiency of 83.3 %. The 1st anoxic zone accounted for 32.0 % TIN removal, with 10.3 % by denitrification and 21.7 % by PDA, meanwhile, the 2nd and 3rd anoxic zones contributed 19.4 % and 4.5 % of TIN removal, primarily achieved through PDA (including endogenous PD coupling Anammox). The 1st and 2nd intermittent zones accounted for 27.2 % and 17.0 % of TIN removal, respectively, with 13.7 %-21.3 % by PNA and 3.2 %-5.3 % by PDA. Although this process did not pursue nitrite accumulation in any zone (< 1.5 mg-N/L), PNA and PDA accounted for 35.1 % and 52.1 % of TIN removal, respectively. Only 0.21 % of removed TIN was released as nitrous oxide. The AnAOB of Candidatus Brocadia was enriched in each zone, with a relative abundance of 0.66 %-2.29 %. In intermittent zones, NOB had been partially suppressed (AOB/NOB = 0.73-0.88), mainly due to intermittent aeration and effective nitrite utilization by AnAOB since its population size was much greater than NOB. Present study indicated that the three-stage AO biofilm process with intermittent aeration could enhance nitrogen removal via PNA and PDA with a low N2O emission factor.

New insights into functional divergence and adaptive evolution of uncultured bacteria in anammox community by complete genome-centric analysis

Anaerobic ammonium-oxidation (anammox) bacteria play a crucial role in global nitrogen cycling and wastewater nitrogen removal, but they share symbiotic relationships with various other microorganisms. Functional divergence and adaptive evolution of uncultured bacteria in anammox community remain underexplored. Although shotgun metagenomics based on short reads has been widely used in anammox research, metagenome-assembled genomes (MAGs) are often discontinuous and highly contaminated, which limits in-depth analyses of anammox communities. Here, for the first time, we performed Pacific Biosciences high-fidelity (HiFi) long-read sequencing on the anammox granule sludge sample from a lab-scale bioreactor, and obtained 30 accurate and complete metagenome-assembled genomes (cMAGs). These cMAGs were obtained by selecting high-quality circular contigs from initial assemblies of long reads generated by HiFi sequencing, eliminating the need for Illumina short reads, binning, and reassembly. One new anammox species affiliated with Candidatus Jettenia and three species affiliated with novel families were found in this anammox community. cMAG-centric analysis revealed functional divergence in general and nitrogen metabolism among the anammox community members, and they might adopt a cross-feeding strategy in organic matter, cofactors, and vitamins. Furthermore, we identified 63 mobile genetic elements (MGEs) and 50 putative horizontal gene transfer (HGT) events within these cMAGs. The results suggest that HGT events and MGEs related to phage and integration or excision, particularly transposons containing tnpA in anammox bacteria, might play important roles in the adaptive evolution of this anammox community. The cMAGs generated in the present study could be used to establish of a comprehensive database for anammox bacteria and associated microorganisms. These findings highlight the advantages of HiFi sequencing for the studies of complex mixed cultures and advance the understanding of anammox communities.

Microbial diversity and functions in saline soils: A review from a biogeochemical perspective

BACKGROUND

Soil salinization threatens food security and ecosystem health, and is one of the important drivers to the degradation of many ecosystems around the world. Soil microorganisms have extremely high diversity and participate in a variety of key ecological processes. They are important guarantees for soil health and sustainable ecosystem development. However, our understanding of the diversity and function of soil microorganisms under the change of increased soil salinization is fragmented.

AIM OF REVIEW

Here, we summarize the changes in soil microbial diversity and function under the influence of soil salinization in diverse natural ecosystems. We particularly focus on the diversity of soil bacteria and fungi under salt stress and the changes in their emerging functions (such as their mediated biogeochemical processes). This study also discusses how to use the soil microbiome in saline soils to deal with soil salinization for supporting sustainable ecosystems, and puts forward the knowledge gaps and the research directions that need to be strengthened in the future.

KEY SCIENTIFIC CONCEPTS OF REVIEW

Due to the rapid development of molecular-based biotechnology (especially high-throughput sequencing technology), the diversity and community composition and functional genes of soil microorganisms have been extensively characterized in different habitats. Clarifying the responding pattern of microbial-mediated nutrient cycling under salt stress and developing and utilizing microorganisms to weaken the adverse effects of salt stress on plants and soil, which are of guiding significance for agricultural production and ecosystem management in saline lands.

An overlooked effect of hydroxylamine on anammox granular sludge: Promoting granulation and boosting activity

The exogenous hydroxylamine dosing has been proven to enhance nitrite supply for anammox bacteria. In this study, exogenous hydroxylamine was fed into a sequencing batch reactor to investigate its long-term effect on anammox granular sludge. The results showed that hydroxylamine enhanced the reactor's performance with an increase in total nitrogen removal rate from 0.23 to 0.52 kg N/m3/d and an increase in bacterial activity from 11.65 to 78.24 mg N/g VSS/h. Meanwhile, hydroxylamine promoted granulation by eluting flocs. And higher anammox activity and granulation were supported by extracellular polymeric substances (EPS) characteristics. Moreover, Candidatus Brocadia's abundance increased from 1.10 % to 3.03 %, and its symbiosis with heterotrophic bacteria was intensified. Additionally, molecular docking detailed the mechanism of the hydroxylamine effect. Overall, this study would provide new insights into the hydroxylamine dosing strategy application.

Partial denitrifying phosphorus removal coupling with anammox (PDPRA) enables synergistic removal of C, N, and P nutrients from municipal wastewater: A year-round pilot-scale evaluation

Applying anaerobic ammonium oxidation (anammox) in municipal wastewater treatment plants (MWWTPs) can unlock significant energy and resource savings. However, its practical implementation encounters significant challenges, particularly due to its limited compatibility with carbon and phosphorus removal processes. This study established a pilot-scale plant featuring a modified anaerobic-anoxic-oxic (A2O) process and operated continuously for 385 days, treating municipal wastewater of 50 m3/d. For the first time, we propose a novel concept of partial denitrifying phosphorus removal coupling with anammox (PDPRA), leveraging denitrifying phosphorus-accumulating organisms (DPAOs) as NO2- suppliers for anammox. 15N stable isotope tracing revealed that the PDPRA enabled an anammox reaction rate of 6.14 ± 0.18 μmol-N/(L·h), contributing 57.4 % to total inorganic nitrogen (TIN) removal. Metagenomic sequencing and 16S rRNA amplicon sequencing unveiled the co-existence and co-prosperity of anammox bacteria and DPAOs, with Candidatus Brocadia being highly enriched in the anoxic biofilms at a relative abundance of 2.46 ± 0.52 %. Finally, the PDPRA facilitated the synergistic conversion and removal of carbon, nitrogen, and phosphorus nutrients, achieving remarkable removal efficiencies of chemical oxygen demand (COD, 83.5 ± 5.3 %), NH4+ (99.8 ± 0.7 %), TIN (77.1 ± 3.6 %), and PO43- (99.3 ± 1.6 %), even under challenging operational conditions such as low temperature of 11.7 °C. The PDPRA offers a promising solution for reconciling the mainstream anammox and the carbon and phosphorus removal, shedding fresh light on the paradigm shift of MWWTPs in the near future.

Robustness of the synergistic partial-denitrification, anammox, and fermentation process for treating domestic and nitrate wastewaters under fluctuating C/N ratios

The synergistic partial-denitrification, anammox, and fermentation (SPDAF) process presents a promising solution to treat domestic and nitrate wastewaters. However, its capability to handle fluctuating C/N ratios (the ratios of COD to total inorganic nitrogen) in practical applications remains uncertain. In this study, the SPDAF process was operated for 236 days with C/N ratios of 0.7-3.5, and a high and stable efficiency of nitrogen removal (84.9 ± 7.8%) was achieved. The denitrification and anammox contributions were 6.1 ± 7.1% and 93.9 ± 7.1%, respectively. Batch tests highlighted the pivotal role of in situ fermentation at low biodegradable chemical oxygen demand (BCOD)/NO3- ratios. As the BCOD/NO3- ratios increased from 0 to 6, the NH4+ and NO3- removal rates increased, while the anammox contribution decreased from 100% to 80.1% but remained the primary pathway of nitrogen removal. The cooperation and balanced growth of denitrifying bacteria, anammox bacteria, and fermentation bacteria contributed to the system's robustness under fluctuating C/N ratios.

Insight into the potentiality of nano zero-valent iron on enhancing the nitrite accumulation and phosphorus removal performance of endogenous partial denitrification systems

Endogenous partial denitrification (EPD) has drawn a lot of interest due to its abundant nitrite (NO2--N) accumulation capacity. However, the poor phosphate (PO43--P) removal rate of EPD restricts its promotion and application. In this study, the potentiality of various nano zero-valent iron (nZVI) concentrations (0, 20, 40, and 80 mg/L) on NO2--N accumulation and PO43--P removal in EPD systems had been investigated. Results showed that nZVI improved NO2--N accumulation and PO43--P removal, with the greatest nitrate-to-nitrite transformation ratio (NTR) and PO43--P removal rate of 97.74 % and 64.76 % respectively at the optimum nZVI level (80 mg/L). Microbial community analysis also proved that nZVI had a remarkable influence on the microbial community of EPD. Candidatus_Competibacter was contribute to NO2--N accumulation which was enriched from 24.74 % to 40.02 %. The enrichment of Thauera, Rhodobacteraceae, Pseudomonas were contributed to PO43--P removal. The chemistry of nZVI not only compensated for the deficiency of biological PO43--P removal, but also enhanced NO2--N enrichment. Therefore, nZVI had the huge potentiality to improve the operational performance of the EPD system.

Spatial difference in nitrogen removal pathways and microbial functional diversity in an EGSB reactor during the start-up of PD/Anammox

The start-up of a relatively high nitrogen load PD/Anammox in an EGSB reactor was achieved through strategies of bioaugmentation, mass transfer enhancement, and COD/NO3--N control, with NRR of 5.2 g N/L/d. Longitudinal heterogeneity in EGSB reactor induced divergent nitrogen conversion pathways and enriched different functional microorganisms between stratified sludge. Along the elevation of the reactor, the proportion of removed nitrogen through anammox increased continuously from bottom, middle and up, which were 65.0 %, 79.8 %, and 84.1 %, respectively, consistent with the trend of ex-situ activities calculated with Gompertz model. The bottom zone played a role in mixed nitrogen conversion to provide NO2--N accumulation and nitrogen removal, with higher abundance of Thauera, Denitratisoma and Ignavibacterium. The middle part was enriched Candidatus_Kuenenia (12.51 %), and up inhibited completed denitrification, together forming the anammox dominant zone. The proposed functional zones in the EGSB reactor provided approaches for the optimisation of high-load PD/Anammox systems.

Anaerobic oxidation of ammonium and short-chain gaseous alkanes coupled to nitrate reduction by a bacterial consortium

The bacterial species "Candidatus Alkanivorans nitratireducens" was recently demonstrated to mediate nitrate-dependent anaerobic oxidation of short-chain gaseous alkanes (SCGAs). In previous bioreactor enrichment studies, the species appeared to reduce nitrate in two phases, switching from denitrification to dissimilatory nitrate reduction to ammonium (DNRA) in response to nitrite accumulation. The regulation of this switch or the nature of potential syntrophic partnerships with other microorganisms remains unclear. Here, we describe anaerobic multispecies cultures of bacteria that couple the oxidation of propane and butane to nitrate reduction and the oxidation of ammonium (anammox). Batch tests with 15N-isotope labelling and multi-omic analyses collectively supported a syntrophic partnership between "Ca. A. nitratireducens" and anammox bacteria, with the former species mediating nitrate-driven oxidation of SCGAs, supplying the latter with nitrite for the oxidation of ammonium. The elimination of nitrite accumulation by the anammox substantially increased SCGA and nitrate consumption rates, whereas it suppressed DNRA. Removing ammonium supply led to its eventual production, the accumulation of nitrite, and the upregulation of DNRA gene expression for the abundant "Ca. A. nitratireducens". Increasing the supply of SCGA had a similar effect in promoting DNRA. Our results suggest that "Ca. A. nitratireducens" switches to DNRA to alleviate oxidative stress caused by nitrite accumulation, giving further insight into adaptability and ecology of this microorganism. Our findings also have important implications for the understanding of the fate of nitrogen and SCGAs in anaerobic environments.

Advanced nitrogen removal from municipal wastewater through partial nitrification-denitrification coupled with anammox in step-feed continuous system

Combined partial nitrification-denitrification/anammox (PN-PD/A) processes have attracted great attention from researchers in recent years to achieve high nitrogen removal from low carbon /nitrogen (C/N) municipal wastewater. In this context, a step-feed anoxic/oxic (A/O) process was conducted in this study through the combination of the partial nitrification-anammox (PN/A) and partial denitrification-anammox (PD/A) to remove N from municipal wastewater with low C/N. The enhancement of the PN-PD/A process resulted in N removal efficiency of 85.6% at C/N of 2.8. The contributions of the anammox reached 36.4 and 8.8% in the anoxic and oxic chambers, respectively. The biocarriers added to the anoxic and oxic chambers increased the relative abundance of the anammox bacteria in biofilms from 0.61% to 1.51% and 1.02%, respectively. This study demonstrated that employing the step-feed A/O process can create optimal conditions for the anammox bacteria growth, thereby ensuring advanced N removal from low C/N municipal wastewater.

Enhancing start-up strategies for anammox granular sludge systems: A review

The anaerobic ammonium oxidation (anammox) process has been developed as one of the optimal alternatives to the conventional biological nitrogen removal process because of its high nitrogen removal capacity and low energy consumption. However, the slow growth rate of anammox bacteria and its high sensitivity to environmental changes have resulted in fewer anammox sludge sources for process start-up and a lengthy start-up period. Given that anammox microorganisms tend to aggregate, granular-anammox sludge is a frequent byproduct of the anammox process. In this study, we review state-of-the-art strategies for promoting the formation of anammox granules and the start-up of the anammox process based on the literature of the past decade. These strategies are categorized as the transformation of alternative sludge, the addition of accelerators, the introduction of functional carriers, and the implementation of other physical methods. In addition, the formation mechanism of anammox granules, the operational performance of various strategies, and their promotion mechanisms are introduced. Finally, prospects are presented to indicate the gaps in contemporary research and the potential future research directions. This review functions as a summary guideline and theoretical reference for the cultivation of granular-anammox sludge, the start-up of the anammox process, and its practical application.

Anaerobic starvation realizes partial nitrification and starts anammox bacteria self-enrichment in mainstream municipal sewage treatment in a low filling ratio sequencing batch reactor

The initiating and stable preservation of partial nitrification (PN) and achievement of anammox bacteria self-enrichment in domestic sewage is a purposeful subject. In this article, an originality tactics of anaerobic starvation for 100 days was adopted for rapidly achieving PN in actual wastewater, the nitrite accumulation rate (NAR) improved from 4.95% to 81.73% in 18 days. After anaerobic starvation was stopped, the stable PN effect furnished enough stroma for the growth of anammox bacteria. The abundance of Candidatus Brocadia grew from 0% to 0.42% in floc sludge and 0.43% in blank biofilm, which promoted nitrogen removal effect. Anaerobic starvation continuing 74 days generated further decrease in the abundance of Nitrobacter and Nitrospira of nitrite-oxidizing bacteria (NOB), indicating that anaerobic starvation can restore the destroyed partial nitrification. In conclusion, this article furnished a low-cost method for achieving anammox bacteria self-enrichment in mainstream municipal wastewater in 10% filling ratio without chemicals addition.

Pilot-scale demonstration of self-enrichment of anammox bacteria in a two-stage nitrification-denitrification suspended sludge system treating municipal wastewater under extremely low nitrogen loading rate

In suspended sludge system, efficient enrichment and retention of anammox bacteria are crucial obstacles in mainstream wastewater treatment by anammox process. In this study, anammox bacteria was self-enriched in a pilot-scale suspended sludge system of two-stage nitrification-denitrification process serving municipal wastewater treatment. With the low ammonia (NH4+-N) of 9.3 mg/L, nitrate (NO3--N) of 15.6 mg/L and COD/NO3--N of 2.2 under extremely low nitrogen loading rate of 0.012 kg N/m3/d, anammox activity bloomed after its abundance increasing from 5.9 × 107 to 4.6 × 109 copies/g dry sludge. Significant NH4+-N removal was occurred and maintained stably in the denitrification reactor with anammox bacteria accounting for 1.13%, even under temperature decreasing to 20.0℃. The adequately anoxic environment, efficient retention with the static settlement, and NO2- production via NO3- reduction provided favorable environment for anammox bacteria. This study demonstrated the feasibility and great potential in mainstream anammox application without seeding specific sludge.

Electron transfer mechanism of intracellular carbon-dependent DNRA inside anammox bacteria

Generally, anaerobic ammonium oxidation (anammox) converts nitrite (NO2-) and ammonium (NH4+) to nitrogen gas (N2) but generates some nitrate (NO3-) (equivalent to 11% of inlet total nitrogen (TN)). Although it reported that anammox bacteria could degrade NO3- via dissimilatory nitrate reduction to ammonium (DNRA) pathway using the intracellular carbon as the electron donor, it is still unclear the specific electron transfer mechanism in this intracellular carbon-dependent DNRA inside anammox bacteria, and whether the sole anammox bacteria could achieve higher TN removal efficiency more than the theoretical maximum of 89%. In this study, transcriptome analysis and metabolic inhibitor experiments demonstrated that NADH generated from the decomposition of the intracellular carbon (glycogen) supplied electrons for the NO3-conversion; the electrons were transferred from NADH to nitrate reductase (Nar) and nitrite reductase forming ammonium (NrfA) from ubiquinone (UQ) and complex III, respectively. Combining the intracellular carbon-dependent DNRA with normal anammox process, an average TN removal efficiency of 95% was achieved by the sole anammox bacteria in a sequencing batch reactor. Fluorescent in situ hybridization (FISH) images and real-time fluorescence quantitative PCR (qPCR) results illustrated anammox bacteria could survive and proliferate in the SBR. Our work improved the understanding of the electron transfer mechanism inside anammox bacteria, and further exploit its potential in nitrogen pollutants removal.

Denitrifying Woodchip Bioreactors: A Microbial Solution for Nitrate in Agricultural Wastewater-A Review

Nitrate (NO3-) is highly water-soluble and considered to be the main nitrogen pollutants leached from agricultural soils. Its presence in aquatic ecosystems is reported to cause various environmental and public health problems. Bioreactors containing microbes capable of transforming NO3- have been proposed as a means to remediate contaminated waters. Woodchip bioreactors (WBRs) are continuous flow, reactor systems located below or above ground. Below ground systems are comprised of a trench filled with woodchips, or other support matrices. The nitrate present in agricultural drainage wastewater passing through the bioreactor is converted to harmless dinitrogen gas (N2) via the action of several bacteria species. The WBR has been suggested as one of the most cost-effective NO3--removing strategy among several edge-of-field practices, and has been shown to successfully remove NO3- in several field studies. NO3- removal in the WBR primarily occurs via the activity of denitrifying microorganisms via enzymatic reactions sequentially reducing NO3- to N2. While previous woodchip bioreactor studies have focused extensively on its engineering and hydrological aspects, relatively fewer studies have dealt with the microorganisms playing key roles in the technology. This review discusses NO3- pollution cases originating from intensive farming practices and N-cycling microbial metabolisms which is one biological solution to remove NO3- from agricultural wastewater. Moreover, here we review the current knowledge on the physicochemical and operational factors affecting microbial metabolisms resulting in removal of NO3- in WBR, and perspectives to enhance WBR performance in the future.

Performance of anammox enchanced by pulsed electric fields under added organic carbon sources using integrated network and metagenomics analyses

This paper aims to investigate the function of a pulsed electric field (PEF) in the anaerobic ammonia oxidation (anammox) process after adding certain chemical oxygen demand (COD) through integrated network and metagenomics analyses. The findings showed that the presence of COD was detrimental to anammox, but PEF could significantly reduce the adverse effect. The total nitrogen removal in the reactor for applying PEF was 16.99% higher on average than the reactor for only dosing COD. Additionally, PEF upgraded the abundance of anammox bacteria subordinate to the phylum Planctomycetes by 9.64%. The analysis of molecular ecological networks promulgated that PEF resulted in an increase in network scale and topology complexity, thereby boosting the potential collaboration of the communities. Metagenomics analyses demonstrated that PEF dramatically promoted anammox central metabolism in the presence of COD, specifically enhancing pivotal N functional genes (hzs, hdh, amo, hao, nas, nor and nos).

Prokaryotic community interchange between distinct microhabitats causes community pressure on anammox biofilm development

Biofilms are an efficient way to underpin the biological process of wastewater treatment. However, little is known about the driving forces of biofilm formation and development in industrial settings. Long-term observation of anammox biofilms indicated the interplay between different microhabitats (biofilm, aggregate, plankton) was important in sustaining biofilm formation. SourceTracker analysis showed that 88.77 ± 2.26% of initial biofilm originated from the aggregate, however, independent evolution was led by anammox species in the later stage (182d and 245d). Noticeably, the source proportion of aggregate and plankton increased when temperature varied, suggesting an interchange of species between different microhabitats could be helpful to biofilm recovery. The microbial interaction pattern and community variation displayed similar trends, but the unknown source proportion of interaction was very high during the entire incubation (7-245d), thereby the same species may develop different relationships within the distinct microhabitats. The core phyla, Proteobacteria and Bacteroidota, accounted for ∼80% of interactions in all lifestyles, which is consistent with the fact that Bacteroidota played important role in the early stage of biofilm assembly. Although anammox species evolved few links with other OTUs, Candidatus Brocadiaceae still outcompeted the NS9 marine group to dominate the homogeneous selection process in the later stage (56-245d) of biofilm assembly, implying that the functional species may be decoupled from the core species in the microbial network. The conclusions will shed a light on the understanding of biofilm development in large-scale biosystems of wastewater treatment.

Scalable architecture of low-cost household microbial fuel cell for domestic wastewater treatment and simultaneous energy recovery

Researchers are still trying to achieve desirable results while treating actual wastewater at the field size when scaling up a microbial fuel cell (MFC). This pilot-scale project aimed to create a decentralised system for treating domestic wastewater and concurrent energy generation that may be used as a model for the decentralisation process. In this investigation, a cylindrical-shaped earthen membrane was utilized. The arrangement was deployed on-site at a residence for the treatment of domestic wastewater as well as simultaneous generation of power. From August until November 2021, the 36 L pilot-scale setup was operational for a period of 92 days. The setup's performance was affected by seasonal temperature variations during the operation period. The system's performance was measured in terms of COD, nitrate, and NH₃-N removal, with the highest results being 93.52 %, 84.93 %, and 74.78 %, respectively. The pilot-scale setup achieved the highest current of 43.7 mA, and the output voltage of the setup was boosted to 4.1 V using a power management system. The sustainable operation of pilot household MFC showed a positive indication for field application with a low-cost solution.

Rapid enrichment of anammox bacteria and transformation to partial denitrification/anammox with nitrification/denitrification sludge

The stable nitrite (NO₂^--N) generation and rapid startup of anammox-based process are the main bottlenecks hindering its application in mainstream municipal wastewater treatment. In this study, a Partial-Denitrification (PD) system reducing nitrate (NO₃^--N) to NO₂^--N was rapidly developed within 40 days, using the nitrification/denitrification sludge from wastewater treatment plant. The NO₃^--N to NO₂^--N transformation ratios achieved 80.6 %. Significantly, a fast self-enrichment of anammox bacteria in this system was subsequently obtained, resulting in the successful transformation to an efficient PD/Anammox (PD/A) process after 79-day operation. The total nitrogen removal efficiency increased from 12.4 % to 90.0 % with influent ammonia and nitrate of 45.9 mg N/L and 62.2 mg N/L, corresponding to the anammox activity significantly increasing to 6.0 mgNH₄⁺-N/g VSS/h without seeding anammox sludge. Abundance of anammox increased from 6.7 × 10⁸ to 2.0 × 10¹¹ copies/g dry sludge. High-throughput sequencing results showed that Candidatus Brocadia was the only known anammox genus and accounted for 1.08 % during the PD/A stage. Functional bacteria for PD, assumed to be the Thauera, was enriched from 1.99 % to 60.06 % but decreased to 32.49 % during the improvement of anammox activity. It demonstrated that the PD system with stable NO₂^--N accumulation enabled a rapid self-enrichment of anammox bacteria and sufficient nitrogen removal with ordinary nitrification/denitrification sludge. This provides new insights into the scaling application of anammox by integrating PD with shortened startup periods and improved TN removal efficiency.

Anammox-based granulation cycle for sustainable granular sludge biotechnology from mechanisms to strategies: A critical review

Anaerobic ammonium oxidation (anammox) granular sludge is a promising biotechnological process for treating low-carbon nitrogenous wastewater, and is featured with low energy consumption and footprint. Previous theoretical and experimental research on anammox granular sludge processes mainly focused on granulation (flocs → granules), but pay little attention to the granulation cycle including granulation and regeneration. This work reviewed the previous studies from the perspective of anammox granules lifecycle and proposed various sustainable formation mechanisms of anammox granules. By reviewing the anaerobic, aerobic, and anammox granulation mechanisms, we summarize the mechanisms of thermodynamic theory, heterogeneous growth, extracellular polymeric substance (EPS)-based adhesion, quorum sensing (QS)-based regulation, biomineralization-based growth, and stratification of microorganisms to understand anammox granulation. In the regeneration process, the formation of precursors for re-granulation is explained by the mechanisms of physical crushing, quorum quenching and dispersion cue sensing. Based on the granulation cycle mechanism, the rebuilding of the normal regeneration process is considered essential to avoid granule floatation and the wash-out of granules. This comprehensive review indicates that future research on anammox granulation cycle should focus on the effects of filamentous bacteria in denitrification-anammox granulation cycle, the role of QS/ quorum quenching (QQ)-based autoinducers, development of diversified mechanisms to understand the cycle and the cycle mechanisms of stored granules.

Simultaneous nitrogen and phosphorus removal from municipal wastewater by Fe(III)/Fe(II) cycling mediated partial-denitrification/anammox

The efficient removal of nitrogen and phosphorus remains challenging for traditional wastewater treatment. In this study, the feasibility for enhancing the partial-denitrification and anammox process by Fe (III) reduction coupled to anammox and nitrate-dependent Fe (II) oxidation was explored using municipal wastewater. The nitrogen removal efficiency increased from 75.5 % to 83.0 % by adding Fe (III). Batch tests showed that NH₄⁺-N was first oxidized to N₂ or NO₂^--N by Fe (III), then NO₃^--N was reduced to NO₂^--N and N₂ by Fe (II), and finally, NO₂^--N was utilized by anammox. Furthermore, the performance of phosphorus removal improved by Fe addition and the removal efficiency increased to 78.7 %. High-throughput sequencing showed that the Fe-reducing bacteria Pseudomonas and Thiobacillus were successfully enriched. The abundance of anammox bacterial increased from 0.03 % to 0.22 % by multiple nitrite supply pathways. Fe addition presents a promising pathway for application in the anammox process.

Advanced nitrogen removal from real municipal wastewater by multiple coupling nitritation, denitritation and endogenous denitritation with anammox in a single suspended sludge bioreactor

Achieving advanced nitrogen removal based on anammox for treating mainstream municipal wastewater in a single suspended sludge bioreactor is a challenging research topic. In this study, multiple coupling nitritation, denitritation and endogenous denitritation with anammox (PNA-(E)PDA) was simultaneously achieved in a 10 L step-feed bioreactor, which enhanced stable nitrogen removal. After 223 days of operation, the total nitrogen concentrations of the influent and effluent were 70.7 ± 6.1 and 4.3 ± 1.8 mg/L, respectively, when treating municipal wastewater even at C/N ratio of 2.24 with only 5 h of aerobic time (DO: 0.5-0.8 mg/L). After the evolution of nitritation/anammox to PNA-(E)PDA, the contribution of anammox to nitrogen removal increased to 78.6% and the anammox activity increased from 4.3 ± 0.2 to 15.2 ± 0.7 mg NH₄⁺-N/gVSS/d. qPCR results showed that the abundance of anammox bacteria increased from 4.1 × 10⁹ to 4.5 × 10¹⁰ copies/ (g VSS). High-throughput sequencing further revealed that the relative abundance of Candidatus Brocadia, the dominant anammox genus, increased from 0.09 to 0.46%. Based on the strong competitiveness of anammox on nitrite, this novel PNA-(E)PDA process provides a potential strategy for enriching anammox bacteria in municipal wastewater treatment plants.

Micron-scale biogeography reveals conservative intra anammox bacteria spatial co-associations

Micron-scale resolution can help to reliably identify true taxon-taxon interactions in complex microbial communities. Despite widespread recognition of the critical role of metabolic interactions in anaerobic ammonium oxidation (anammox) system performance, no studies have examined microbial interactions at the micron-scale in anammox consortia. To fill this gap, we extensively sampled (totally 242 samples) the consortia of a lab-scale anammox reactor at different length scales, including bulk-scale (∼cm), macro-scale (300-500 µm) and micron-scale (70-100 µm). We firstly observed evident micron-scale heterogeneity in anammox consortia, with the relative abundance of anammox bacteria fluctuated greatly across individual clusters (2.0%-79.3%), indicating that the biotic interactions play a significant role in the assembly of anammox communities under well-controlled and well-mixed condition. Importantly, by mapping the spatial associations in anammox consortia at micron-scale, we demonstrated that the conserved co-associations for anammox bacteria were restricted to three different Brocadia species over time, and their co-associations with heterotrophs were random, implying that there was no statistically significant symbiotic interaction between anammox bacteria and other heterotrophic populations. Further metagenomic binning revealed that the quorum sensing with secondary messenger c-di-GMP potentially holding on the conservative metabolic cooperation among Brocadia species. These results shed new light on the social behavior of the anammox community. Overall, delineating of biological structures at micron-scale opens a new way of monitoring the microbial spatial structure and interactions, paving the way for improved community engineering of biotreatment systems.

Multidisciplinary characterization of nitrogen-removal granular sludge: A review of advances and technologies

Nitrogen-removal granular sludge (NRGS) is a promising technology in wastewater treatment, with advantages of efficient nitrogen removal, less footprint, lower sludge production and energy consumption, and is a way for wastewater treatment plants to achieve carbon-neutrality. Aerobic granular sludge (AGS) and anammox granular sludge (AnGS) are two typical NRGS technologies that have attracted extensive attention. Mounting evidence has shown strong associations between NRGS properties and the status of NRGS systems; however, a holistic view is still missing. The aim of this article is to provide an overview of NRGS with an emphasis on characterization. Specifically, the integrated nitrogen transformation pathways inside NRGS and the performance of NRGS treating various wastewaters are discussed. NRGS properties are categorized as physical-, chemical-, biological- and systematical ones, presenting current advances and corresponding characterization technologies. Finally, the future prospects for furthering the mechanistic understanding and engineering application of NRGS are proposed. Overall, the technological advancements in characterization have greatly contributed to understanding NRGS properties, which are potential factors for optimizing the performance and evaluating the working status of NRGS. This review will provide guidance in characterizing NRGS properties and boost the introduction of novel characterization technologies.

Metabolic Diversity and Aero-Tolerance in Anammox Bacteria from Geochemically Distinct Aquifers

Anaerobic ammonium oxidation (anammox) is important for converting bioavailable nitrogen into dinitrogen gas, particularly in carbon-poor environments. However, the diversity and prevalence of anammox bacteria in the terrestrial subsurface-a typically oligotrophic environment-are little understood. To determine the distribution and activity of anammox bacteria across a range of aquifer lithologies and physicochemistries, we analyzed 16S rRNA genes and quantified hydrazine synthase genes and transcripts sampled from 59 groundwater wells and metagenomes and metatranscriptomes from an oxic-to-dysoxic subset. Data indicate that anammox and anammox-associated bacteria (class "Candidatus Brocadiae") are prevalent in the aquifers studied, and that anammox community composition is strongly differentiated by dissolved oxygen (DO), but not ammonia/nitrite. While "Candidatus Brocadiae" diversity decreased with increasing DO, "Candidatus Brocadiae" 16S rRNA genes and hydrazine synthase (hzsB) genes and transcripts were detected across a wide range of bulk groundwater DO concentrations (0 to 10 mg/L). Anammox genes and transcripts correlated significantly with those involved in aerobic ammonia oxidation (amoA), potentially representing a major source of nitrite for anammox. Eight "Candidatus Brocadiae" genomes (63 to 95% complete), representing 2 uncharacterized families and 6 novel species, were reconstructed. Six genomes have genes characteristic of anammox, all for chemolithoautotrophy. Anammox and aerotolerance genes of up to four "Candidatus Brocadiae" genomes were transcriptionally active under oxic and dysoxic conditions, although activity was highest in dysoxic groundwater. The coexpression of nrfAH nitrite reductase genes by "Candidatus Brocadiae" suggests active regeneration of ammonia for anammox. Our findings indicate that anammox bacteria contribute to loss of fixed N across diverse anoxic-to-oxic aquifer conditions, which is likely supported by nitrite from aerobic ammonia oxidation. IMPORTANCE Anammox is increasingly shown to play a major role in the aquatic nitrogen cycle and can outcompete heterotrophic denitrification in environments low in organic carbon. Given that aquifers are characteristically oligotrophic, anammox may represent a major route for the removal of fixed nitrogen in these environments, including agricultural nitrogen, a common groundwater contaminant. Our research confirms that anammox bacteria and the anammox process are prevalent in aquifers and occur across diverse lithologies (e.g., sandy gravel, sand-silt, and volcanic) and groundwater physicochemistries (e.g., various oxygen, carbon, nitrate, and ammonium concentrations). Results reveal niche differentiation among anammox bacteria largely driven by groundwater oxygen contents and provide evidence that anammox is supported by proximity to oxic niches and handoffs from aerobic ammonia oxidizers. We further show that this process, while anaerobic, is active in groundwater characterized as oxic, likely due to the availability of anoxic niches.

The marine nitrogen cycle: new developments and global change

The ocean is home to a diverse and metabolically versatile microbial community that performs the complex biochemical transformations that drive the nitrogen cycle, including nitrogen fixation, assimilation, nitrification and nitrogen loss processes. In this Review, we discuss the wealth of new ocean nitrogen cycle research in disciplines from metaproteomics to global biogeochemical modelling and in environments from productive estuaries to the abyssal deep sea. Influential recent discoveries include new microbial functional groups, novel metabolic pathways, original conceptual perspectives and ground-breaking analytical capabilities. These emerging research directions are already contributing to urgent efforts to address the primary challenge facing marine microbiologists today: the unprecedented onslaught of anthropogenic environmental change on marine ecosystems. Ocean warming, acidification, nutrient enrichment and seawater stratification have major effects on the microbial nitrogen cycle, but widespread ocean deoxygenation is perhaps the most consequential for the microorganisms involved in both aerobic and anaerobic nitrogen transformation pathways. In turn, these changes feed back to the global cycles of greenhouse gases such as carbon dioxide and nitrous oxide. At a time when our species casts a lengthening shadow across all marine ecosystems, timely new advances offer us unique opportunities to understand and better predict human impacts on nitrogen biogeochemistry in the changing ocean of the Anthropocene.

New Insight Into the Interspecies Shift of Anammox Bacteria Ca. "Brocadia" and Ca. "Jettenia" in Reactors Fed With Formate and Folate

The sensitivity of anaerobic ammonium-oxidizing (anammox) bacteria to environmental fluctuations is a frequent cause of reactor malfunctions. It was hypothesized that the addition of formate and folate would have a stimulating effect on anammox bacteria, which in turn would lead to the stability of the anammox process under conditions of a sharp increase in ammonium load, i.e., it helps overcome a stress factor. The effect of formate and folate was investigated using a setup consisting of three parallel sequencing batch reactors equipped with a carrier. Two runs of the reactors were performed. The composition of the microbial community was studied by the 16S rRNA gene profiling and metagenomic analysis. Among anammox bacteria, Ca. "Brocadia" spp. dominated during the first run. A stimulatory effect of folate on the daily nitrogen removal rate (dN) was identified. The addition of formate led to progress in dissimilatory nitrate reduction and stimulated the growth of Ca. "Jettenia" spp. The spatial separation of two anammox species was observed in the formate reactor: Ca. "Brocadia" occupied the carrier and Ca. "Jettenia"-the walls of the reactors. Biomass storage at low temperature without feeding led to an interspecies shift in anammox bacteria in favor of Ca. "Jettenia." During the second run, a domination of Ca. "Jettenia" spp. was recorded along with a stimulating effect of formate, and there was no effect of folate on dN. A comparative genome analysis revealed the patterns suggesting different strategies used by Ca. "Brocadia" and Ca. "Jettenia" spp. to cope with environmental changes.

Sulfidation forwarding high-strength Anammox process using nitrate as electron acceptor via thiosulfate-driven nitrate denitratation

A single up-flow thiosulfate-driven nitrate denitratation coupled with the sulfurized Anammox (TDSA) with the core-shell structure (S⁰@ Anammox granules) provided a chemical/energy-saving way for the removal of high-content ammonium with nitrate as electron acceptor. Approximately 83.66% total nitrogen removal efficiency (TNRE) could be achieved by the sulfurized Anammox encrusted by S⁰/S_n^2- at a high loading rate (2.6 kg-N/(m³·d)) via resisting high concentration of free ammonia (FA) (22.35 mg/L), mainly through S₂O₃^2-, S⁰/S_n^2- -driven partial denitrification-Anammox (PDN-Anammox) process. Moreover, S⁰/S_n^2--PDN-Anammox was largely restricted when intermittently aerated, but still resulting in 74.47% TNRE due to the partial nitrification-Anammox (PN-Anammox). The sequencing analysis revealed that Anammox bacterium (Candidatus_Kuenenia) and sulfur-oxidizing bacterium (Thiobacillus) coexisted, in which Anammox process occurred mainly via NO instead of NH₂OH. This study provided a new perspective for high concentration nitrogen wastewater removal in engineering applications.

Nature's nitrite-to-ammonia expressway, with no stop at dinitrogen

Since the characterization of cytochrome c₅₅₂ as a multiheme nitrite reductase, research on this enzyme has gained major interest. Today, it is known as pentaheme cytochrome c nitrite reductase (NrfA). Part of the NH₄⁺ produced from NO₂^- is released as NH₃ leading to nitrogen loss, similar to denitrification which generates NO, N₂O, and N₂. NH₄⁺ can also be used for assimilatory purposes, thus NrfA contributes to nitrogen retention. It catalyses the six-electron reduction of NO₂^- to NH₄⁺, hosting four His/His ligated c-type hemes for electron transfer and one structurally differentiated active site heme. Catalysis occurs at the distal side of a Fe(III) heme c proximally coordinated by lysine of a unique CXXCK motif (Sulfurospirillum deleyianum, Wolinella succinogenes) or, presumably, by the canonical histidine in Campylobacter jejeuni. Replacement of Lys by His in NrfA of W. succinogenes led to a significant loss of enzyme activity. NrfA forms homodimers as shown by high resolution X-ray crystallography, and there exist at least two distinct electron transfer systems to the enzyme. In γ-proteobacteria (Escherichia coli) NrfA is linked to the menaquinol pool in the cytoplasmic membrane through a pentaheme electron carrier (NrfB), in δ- and ε-proteobacteria (S. deleyianum, W. succinogenes), the NrfA dimer interacts with a tetraheme cytochrome c (NrfH). Both form a membrane-associated respiratory complex on the extracellular side of the cytoplasmic membrane to optimize electron transfer efficiency. This minireview traces important steps in understanding the nature of pentaheme cytochrome c nitrite reductases, and discusses their structural and functional features.

Holistic insights into extracellular polymeric substance (EPS) in anammosx bacterial matrix and the potential sustainable biopolymer recovery: A review

Anaerobic ammonia oxidation (anammox) process has been proven to be a favorable and innovative process, for treatment of nitrogen-rich wastewater due to decreased oxygen and carbon requirements at very high nitrogen loading rates. Anammox process is mainly operated through biofilm or granular sludge structures, as for such slow-growing microorganisms, elevated settling velocity of granules allows for adequate biomass retention and lowered potential risk of washouts. Stability of granular sludge biomass is extremely critical, yet the formation mechanism is poorly understood. There are number of important functions linked to Extracellular Polymeric Substance (EPS) in anammox bacterial matrix, such as; structural stability, aggregation promotion, maintenance of physical structure in the granules, water preserving and protective cell barrier. There is an increasing demand to introduce accurate methods for proper EPS extraction and characterization, to expand the perception of anammox granule stability and potential resource recovery. Analyzing EPS with a focus on various (mechanical and physical) properties can lead to biopolymer production from granular sludge. Biopolymers such as EPS are attractive alternatives substituting the conventional chemical polymers furthermore their recovery from the waste sludge and the potential applications in industrial sectors, leads to a radical enhancement of both environmental and economical sustainability, accelerating the circular economy advancements. Here, this study aims to overview the newest understanding on the structure of anammox sludge EPS, obtained recently and to assess the potential challenges and prospects to identify the knowledge gaps towards constructing an inclusive anammox EPS recovery and characterization procedure.

Alleviating the nitrite stress on anaerobic ammonium oxidation by pyrolytic biochar

The nitrite (NO₂^-) inhibition in anaerobic ammonium oxidation (anammox) process is widely reported. Here, the effects of three pyrolytic biochars (CS300, CS550 and CS800) were investigated to alleviate NO₂^- stress on anammox process under exposure of varied NO₂^--N concentrations (70, 200, 400 and 600 mg L^-1). No nitrite inhibition was observed at 70 mg N L^-1. However, the total nitrogen removal efficiency (TNREs) decreased with NO₂^--N concentration increased, while the biochar-amended groups achieved higher TNREs than the control (CK). At 200 mg N L^-1, the TNREs were 60.2%, 99.0%, 98.5% and 86.6% for CK, CS300, CS550 and CS800, respectively. At 400 mg N L^-1, the TNREs were 23.3%, 56.0%, 37.1% and 29.7% for CK, CS300, CS550 and CS800, respectively. At 600 mg N L^-1 in which severe inhibition was observed, the TNREs were increased by 231% (p = 0.002), 149% (p = 0.014), and 51.0% (p = 0.166) for CS300, CS550 and CS800, respectively, as compared to CK, with the corresponding specific anammox activity increased by 3.1-, 2,0- and 1.1-folds, respectively. CS300 enriched the relative abundance of Candidatus Kuenenia and increased the gene copies of functional genes (hzsA, hdh, nirS and nirK). Besides, CS300 effectively alleviated the suppression of three membrane-associated enzyme complexes for anammox electron transport chain, indicating the possible contribution of redox-active moieties of CS300 to energy conversion metabolism for mitigating the NO₂^--N inhibition. This study provided an effective strategy for alleviating NO₂^--N stress by applying an environmentally compatible material (biochar) on anammox process.

Bacterial nitric oxide metabolism: Recent insights in rhizobia

Nitric oxide (NO) is a reactive gaseous molecule that has several functions in biological systems depending on its concentration. At low concentrations, NO acts as a signaling molecule, while at high concentrations, it becomes very toxic due to its ability to react with multiple cellular targets. Soil bacteria, commonly known as rhizobia, have the capacity to establish a N₂-fixing symbiosis with legumes inducing the formation of nodules in their roots. Several reports have shown NO production in the nodules where this gas acts either as a signaling molecule which regulates gene expression, or as a potent inhibitor of nitrogenase and other plant and bacteria enzymes. A better understanding of the sinks and sources of NO in rhizobia is essential to protect symbiotic nitrogen fixation from nitrosative stress. In nodules, both the plant and the microsymbiont contribute to the production of NO. From the bacterial perspective, the main source of NO reported in rhizobia is the denitrification pathway that varies significantly depending on the species. In addition to denitrification, nitrate assimilation is emerging as a new source of NO in rhizobia. To control NO accumulation in the nodules, in addition to plant haemoglobins, bacteroids also contribute to NO detoxification through the expression of a NorBC-type nitric oxide reductase as well as rhizobial haemoglobins. In the present review, updated knowledge about the NO metabolism in legume-associated endosymbiotic bacteria is summarized.

Methanotrophs: Discoveries, Environmental Relevance, and a Perspective on Current and Future Applications

Methane is the final product of the anaerobic decomposition of organic matter. The conversion of organic matter to methane (methanogenesis) as a mechanism for energy conservation is exclusively attributed to the archaeal domain. Methane is oxidized by methanotrophic microorganisms using oxygen or alternative terminal electron acceptors. Aerobic methanotrophic bacteria belong to the phyla Proteobacteria and Verrucomicrobia, while anaerobic methane oxidation is also mediated by more recently discovered anaerobic methanotrophs with representatives in both the bacteria and the archaea domains. The anaerobic oxidation of methane is coupled to the reduction of nitrate, nitrite, iron, manganese, sulfate, and organic electron acceptors (e.g., humic substances) as terminal electron acceptors. This review highlights the relevance of methanotrophy in natural and anthropogenically influenced ecosystems, emphasizing the environmental conditions, distribution, function, co-existence, interactions, and the availability of electron acceptors that likely play a key role in regulating their function. A systematic overview of key aspects of ecology, physiology, metabolism, and genomics is crucial to understand the contribution of methanotrophs in the mitigation of methane efflux to the atmosphere. We give significance to the processes under microaerophilic and anaerobic conditions for both aerobic and anaerobic methane oxidizers. In the context of anthropogenically influenced ecosystems, we emphasize the current and potential future applications of methanotrophs from two different angles, namely methane mitigation in wastewater treatment through the application of anaerobic methanotrophs, and the biotechnological applications of aerobic methanotrophs in resource recovery from methane waste streams. Finally, we identify knowledge gaps that may lead to opportunities to harness further the biotechnological benefits of methanotrophs in methane mitigation and for the production of valuable bioproducts enabling a bio-based and circular economy.

Towards mainstream deammonification: Comprehensive review on potential mainstream applications and developed sidestream technologies

Deammonification (partial nitritation-anammox) process is a favorable and innovative process, for treatment of nitrogen-rich wastewater due to decreased oxygen and carbon requirements at very high nitrogen loadings. The bacterial groups responsible for this process are anaerobic ammonium oxidation (anammox) bacteria in symbiosis with ammonium oxidizing bacteria (AOB) which have an active role in development of nitrogen removal biotechnology in wastewater. Development and operation of sidestream deammonification processes has augmented since the initial full-scale systems, yet there are several aspects which mandate additional investigation and deliberation by the practitioners, to reach the operating perspective, set for the facility. Process technologies for treatment of streams with high ammonia concentrations continue to emerge, correspondingly, further investigation towards feasibility of applying the deammonification concept, in the mainstream treatment process is required. Mainstream deammonification can potentially improve the process of achieving more sustainable and energy-neutral municipal wastewater treatment, however feasible applications are not accessible yet. This critical review focuses on a comprehensive assessment of the worldwide lab-scale, pilot-scale and full-scale sidestream applications as well as identifying the major issues obstructing the implementation of mainstream processes, in addition to the designs, operational factors and technology advancements at both novel and/or conventional levels. This review aims to provide a novel and broad overview of the status and challenges of both sidestream and mainstream deammonification technologies and installations worldwide to assess the global perspectives on deammonification research in the recent years. The different configurations, crucial factors and overall trends in the development of deammonification research are discussed and conclusively, the future needs for feasible applications are critically reviewed.

Anaerobic Oxidation of Methane Coupled with Dissimilatory Nitrate Reduction to Ammonium Fuels Anaerobic Ammonium Oxidation

Nitrate/nitrite-dependent anaerobic methane oxidation (n-DAMO) is critical for mitigating methane emission and returning reactive nitrogen to the atmosphere. The genomes of n-DAMO archaea show that they have the potential to couple anaerobic oxidation of methane to dissimilatory nitrate reduction to ammonium (DNRA). However, physiological details of DNRA for n-DAMO archaea were not reported yet. This work demonstrated n-DAMO archaea coupling the anaerobic oxidation of methane to DNRA, which fueled Anammox in a methane-fed membrane biofilm reactor with nitrate as only electron acceptor. Microelectrode analysis revealed that ammonium accumulated where nitrite built up in the biofilm. Ammonium production and significant upregulation of gene expression for DNRA were detected in suspended n-DAMO culture with nitrite exposure, indicating that nitrite triggered DNRA by n-DAMO archaea. ¹⁵N-labeling batch experiments revealed that n-DAMO archaea produced ammonium from nitrate rather than from external nitrite. Localized gradients of nitrite produced by n-DAMO archaea in biofilms induced ammonium production via the DNRA process, which promoted nitrite consumption by Anammox bacteria and in turn helped n-DAMO archaea resist stress from nitrite. As biofilms predominate in various ecosystems, anaerobic oxidation of methane coupled with DNRA could be an important link between the global carbon and nitrogen cycles that should be investigated in future research.