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Weary TE, Pappas T, Tusiime P, Tuhaise S, Otali E, Emery Thompson M, Ross E, Gern JE, Goldberg TL. Common cold viruses circulating in children threaten wild chimpanzees through asymptomatic adult carriers. Sci Rep 2024; 14:10431. [PMID: 38714841 PMCID: PMC11076286 DOI: 10.1038/s41598-024-61236-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2024] [Accepted: 05/02/2024] [Indexed: 05/12/2024] Open
Abstract
Reverse zoonotic respiratory diseases threaten great apes across Sub-Saharan Africa. Studies of wild chimpanzees have identified the causative agents of most respiratory disease outbreaks as "common cold" paediatric human pathogens, but reverse zoonotic transmission pathways have remained unclear. Between May 2019 and August 2021, we conducted a prospective cohort study of 234 children aged 3-11 years in communities bordering Kibale National Park, Uganda, and 30 adults who were forest workers and regularly entered the park. We collected 2047 respiratory symptoms surveys to quantify clinical severity and simultaneously collected 1989 nasopharyngeal swabs approximately monthly for multiplex viral diagnostics. Throughout the course of the study, we also collected 445 faecal samples from 55 wild chimpanzees living nearby in Kibale in social groups that have experienced repeated, and sometimes lethal, epidemics of human-origin respiratory viral disease. We characterized respiratory pathogens in each cohort and examined statistical associations between PCR positivity for detected pathogens and potential risk factors. Children exhibited high incidence rates of respiratory infections, whereas incidence rates in adults were far lower. COVID-19 lockdown in 2020-2021 significantly decreased respiratory disease incidence in both people and chimpanzees. Human respiratory infections peaked in June and September, corresponding to when children returned to school. Rhinovirus, which caused a 2013 outbreak that killed 10% of chimpanzees in a Kibale community, was the most prevalent human pathogen throughout the study and the only pathogen present at each monthly sampling, even during COVID-19 lockdown. Rhinovirus was also most likely to be carried asymptomatically by adults. Although we did not detect human respiratory pathogens in the chimpanzees during the cohort study, we detected human metapneumovirus in two chimpanzees from a February 2023 outbreak that were genetically similar to viruses detected in study participants in 2019. Our data suggest that respiratory pathogens circulate in children and that adults become asymptomatically infected during high-transmission times of year. These asymptomatic adults may then unknowingly carry the pathogens into forest and infect chimpanzees. This conclusion, in turn, implies that intervention strategies based on respiratory symptoms in adults are unlikely to be effective for reducing reverse zoonotic transmission of respiratory viruses to chimpanzees.
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Affiliation(s)
- Taylor E Weary
- Department of Pathobiological Sciences, University of Wisconsin School of Veterinary Medicine, Madison, WI, USA
| | - Tressa Pappas
- Department of Paediatrics, University of Wisconsin School of Medicine and Public Health, Madison, WI, USA
| | | | | | - Emily Otali
- The Kasiisi Project, Fort Portal, Uganda
- Kibale Chimpanzee Project, Fort Portal, Uganda
| | - Melissa Emery Thompson
- Kibale Chimpanzee Project, Fort Portal, Uganda
- Department of Anthropology, University of New Mexico, Albuquerque, NM, USA
| | | | - James E Gern
- Department of Paediatrics, University of Wisconsin School of Medicine and Public Health, Madison, WI, USA
| | - Tony L Goldberg
- Department of Pathobiological Sciences, University of Wisconsin School of Veterinary Medicine, Madison, WI, USA.
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Weary TE, Tusiime P, Tuhaise S, Mandujano Reyes JF, Ross E, Gern JE, Goldberg TL. Respiratory disease patterns in rural Western Uganda, 2019-2022. Front Pediatr 2024; 12:1336009. [PMID: 38650995 PMCID: PMC11033374 DOI: 10.3389/fped.2024.1336009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/09/2023] [Accepted: 03/27/2024] [Indexed: 04/25/2024] Open
Abstract
Introduction Respiratory disease is a major cause of morbidity and mortality in the developing world, but prospective studies of temporal patterns and risk factors are rare. Methods We studied people in rural Western Uganda, where respiratory disease is pervasive. We followed 30 adults (ages 22-51 years; 534 observations) and 234 children (ages 3-11 years; 1,513 observations) between May 2019 and July 2022 and collected monthly data on their respiratory symptoms, for a total of 2,047 case records. We examined associations between demographic and temporal factors and respiratory symptoms severity. Results The timing of our study (before, during, and after the emergence of COVID-19) allowed us to document the effects of public health measures instituted in the region. Incidence rates of respiratory symptoms before COVID-19 lockdown were 568.4 cases per 1,000 person-months in children and 254.2 cases per 1,000 person-months in adults. These rates were 2.6 times higher than the 2019 global average for children but comparable for adults. Younger children (ages 3-6 years) had the highest frequencies and severities of respiratory symptoms. Study participants were most likely to experience symptoms in February, which is a seasonal pattern not previously documented. Incidence and severity of symptoms in children decreased markedly during COVID-19 lockdown, illustrating the broad effects of public health measures on the incidence of respiratory disease. Discussion Our results demonstrate that patterns of respiratory disease in settings such as Western Uganda resemble patterns in developed economies in some ways (age-related factors) but not in others (increased incidence in children and seasonal pattern). Factors such as indoor air quality, health care access, timing of school trimesters, and seasonal effects (rainy/dry seasons) likely contribute to the differences observed.
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Affiliation(s)
- Taylor E. Weary
- Department of Pathobiological Sciences, University of Wisconsin School of Veterinary Medicine, Madison, WI, United States
| | | | | | | | | | - James E. Gern
- Department of Pediatrics, University of Wisconsin Hospital and Clinics, Madison, WI, United States
| | - Tony L. Goldberg
- Department of Pathobiological Sciences, University of Wisconsin School of Veterinary Medicine, Madison, WI, United States
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Chapman CA, Gogarten JF, Golooba M, Kalbitzer U, Omeja PA, Opito EA, Sarkar D. Fifty+ years of primate research illustrates complex drivers of abundance and increasing primate numbers. Am J Primatol 2023:e23577. [PMID: 37985837 DOI: 10.1002/ajp.23577] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2023] [Revised: 09/25/2023] [Accepted: 11/05/2023] [Indexed: 11/22/2023]
Abstract
Many primate populations are threatened by human actions and a central tool used for their protection is establishing protected areas. However, even if populations in such areas are protected from hunting and deforestation, they still may be threatened by factors such as climate change and its cascading impacts on habitat quality and disease dynamics. Here we provide a long-term and geographically wide-spread population assessment of the five common diurnal primates of Kibale National Park, Uganda. Over 7 year-long or longer census efforts that spanned 52 years, our team walked 1466 km, and recorded 480 monkey groups. Populations were generally relatively stable with a few exceptions, for which no apparent causative factors could be identified. This stability is unexpected as many ecological changes documented over the last 34+ years (e.g., decreasing food abundance and quality) were predicted to have negative impacts. Populations of some species declined at some sites but increased at others. This highlights the need for large, protected areas so that declines in particular areas are countered by gains in others. Kibale has large areas of regenerating forest and this most recent survey revealed that after 20+ years, forest regeneration in many of these areas appears sufficient to sustain sizeable primate populations, except for blue monkeys that have not colonized these areas. Indeed, the average primate abundance in the regenerating forest was only 8.1% lower than in neighboring old-growth forest. Thus, park-wide primate abundance has likely increased, despite many pressures on the park having risen; however, some areas in the park remain to be assessed. Our study suggests that the restoration, patrolling, and community outreach efforts of the Uganda Wildlife Authority and their partners have contributed significantly to protecting the park and its animals.
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Affiliation(s)
- Colin A Chapman
- Biology Department, Vancouver Island University, Nanaimo, British Columbia, Canada
- Wilson Center, Washington, District of Columbia, USA
- Shaanxi Key Laboratory for Animal Conservation, Northwest University, Xi'an, China
- School of Life Sciences, University of KwaZulu-Natal, Scottsville, Pietermaritzburg, South Africa
| | - Jan F Gogarten
- Helmholtz Institute for One Health, Greifswald, Germany
- Department of Applied Zoology and Nature Conservation, University of Greifswald, Greifswald, Germany
| | - Martin Golooba
- Makerere University Biological Field Station, Fort Portal, Uganda
| | - Urs Kalbitzer
- Department for the Ecology of Animal Societies, Max Planck Institute of Animal Behavior, Konstanz, Germany
- Department of Biology, University of Konstanz, Konstanz, Germany
| | - Patrick A Omeja
- Makerere University Biological Field Station, Fort Portal, Uganda
| | - Emmanuel A Opito
- Makerere University Biological Field Station, Fort Portal, Uganda
| | - Dipto Sarkar
- Department of Geography and Environmental Studies, Carleton University, Ottawa, Canada
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Chapman CA, Angedakin S, Butynski TM, Gogarten JF, Mitani JC, Struhsaker TT. Primate population dynamics in Ngogo, Kibale National Park, Uganda, over nearly five decades. Primates 2023; 64:609-620. [PMID: 37656336 DOI: 10.1007/s10329-023-01087-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2023] [Accepted: 07/31/2023] [Indexed: 09/02/2023]
Abstract
Many anthropogenic-driven changes, such as hunting, have clear and immediate negative impacts on wild primate populations, but others, like climate change, may take generations to become evident. Thus, informed conservation plans will require decades of population monitoring. Here, we expand the duration of monitoring of the diurnal primates at Ngogo in Kibale National Park, Uganda, from 32.9 to 47 years. Over the 3531 censuses that covered 15,340 km, we encountered 2767 primate groups. Correlation analyses using blocks of 25 census walks indicate that encounters with groups of black and white colobus, blue monkeys, and baboons neither increased nor decreased significantly over time, while encounters with groups of redtail monkeys and chimpanzees marginally increased. Encounters with mangabeys and L'Hoesti monkeys increased significantly, while red colobus encounters dramatically decreased. Detailed studies of specific groups at Ngogo document changes in abundances that were not always well represented in the censuses because these groups expanded into areas away from the transect, such as nearby regenerating forest. For example, the chimpanzee population increased steadily over the last 2 + decades but this increase is not revealed by our census data because the chimpanzees expanded, mainly to the west of the transect. This highlights that extrapolating population trends to large areas based on censuses at single locations should be done with extreme caution, as forests change over time and space, and primates adapt to these changes in several ways.
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Affiliation(s)
- Colin A Chapman
- Biology Department, Vancouver Island University, 900 Fifth Street, Nanaimo, BC, V9R 5S5, Canada.
- Wilson Center, Washington, D.C., USA.
- Shaanxi Key Laboratory for Animal Conservation, Northwest University, Xi'an, China.
- School of Life Sciences, University of KwaZulu-Natal, Scottsville, Pietermaritzburg, South Africa.
| | - Samuel Angedakin
- Department of Environmental Management, Makerere University, PO Box 7062, Kampala, Uganda
| | - Thomas M Butynski
- Eastern Africa Primate Diversity and Conservation Program, PO Box 149, Nanyuki, 10400, Kenya
| | - Jan F Gogarten
- Helmholtz Institute for One Health, Helmholtz-Centre for Infectious Research, Greifswald, Germany
- Department of Applied Zoology and Nature Conservation, University of Greifswald, Greifswald, Germany
| | - John C Mitani
- Department of Anthropology, University of Michigan, Ann Arbor, MI, USA
- Ngogo Chimpanzee Project, Phoenix, AZ, USA
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Illegal Harvesting within a Protected Area: Spatial Distribution of Activities, Social Drivers of Wild Meat Consumption, and Wildlife Conservation. Animals (Basel) 2023; 13:ani13050771. [PMID: 36899628 PMCID: PMC10000183 DOI: 10.3390/ani13050771] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2022] [Revised: 01/06/2023] [Accepted: 01/19/2023] [Indexed: 02/23/2023] Open
Abstract
The African tropical forests host an inestimable number of resources, including food, medicine, vegetal and animal species. Among them, chimpanzees are threatened with extinction by human activities affecting their habitats, such as forest product harvesting, and/or more directly, snaring and trafficking. We aimed to better understand the spatial distribution of these illegal activities, and the reasons for setting snares and consuming wild meat in an agricultural landscape (subsistence farming and cash crops) densely populated near a protected area (Sebitoli, Northern part of Kibale National Park, Uganda). To carry out this study, we combined GPS records of illegal activities collected with group counts (in total, n = 339 tea workers, 678 villagers, and 1885 children) and individual interviews (n = 74 tea workers, 42 villagers, and 35 children). A quarter of illegal activities collected (n = 1661) targeted animal resources and about 60% were recorded in specific areas (southwest and northeast) of the Sebitoli chimpanzee home range. Wild meat consumption, which is illegal in Uganda, is a relatively common practice among participants (17.1% to 54.1% of respondents depending on actor types and census methods). However, consumers declared that they eat wild meat unfrequently (0.6 to 2.8 times per year). Being a young man coming from districts contiguous to Kibale National Park particularly raises the odds of consuming wild meat. Such an analysis contributes to the understanding of wild meat hunting among traditional rural and agricultural societies from East Africa.
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Opito EA, Alanko T, Kalbitzer U, Nummelin M, Omeja P, Valtonen A, Chapman CA. 30 years brings changes to the arthropod community of Kibale National Park, Uganda. Biotropica 2023. [DOI: 10.1111/btp.13206] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/10/2023]
Affiliation(s)
| | | | - Urs Kalbitzer
- Department for the Ecology of Animal Societies Max Planck Institute of Animal Behavior Konstanz Germany
- Department of Biology University of Konstanz Konstanz Germany
| | - Matti Nummelin
- Faculty of Biological and Environmental Sciences University of Helsinki Helsinki Finland
| | - Patrick Omeja
- Makerere University Biological Field Station Fort Portal Uganda
| | - Anu Valtonen
- Department of Environmental and Biological Sciences University of Eastern Finland Joensuu Finland
| | - Colin A. Chapman
- Biology Department Vancouver Island University Nanaimo British Columbia Canada
- Department of Anthropology The George Washington University Washington District of Columbia USA
- School of Life Sciences University of KwaZulu‐Natal Scottsville, Pietermaritzburg South Africa
- Shaanxi Key Laboratory for Animal Conservation Northwest University Xi'an China
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Chapman CA, Abernathy K, Chapman LJ, Downs C, Effiom EO, Gogarten JF, Golooba M, Kalbitzer U, Lawes MJ, Mekonnen A, Omeja P, Razafindratsima O, Sheil D, Tabor GM, Tumwesigye C, Sarkar D. The future of sub-Saharan Africa’s biodiversity in the face of climate and societal change. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.790552] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Many of the world’s most biodiverse regions are found in the poorest and second most populous continent of Africa; a continent facing exceptional challenges. Africa is projected to quadruple its population by 2100 and experience increasingly severe climate change and environmental conflict—all of which will ravage biodiversity. Here we assess conservation threats facing Africa and consider how these threats will be affected by human population growth, economic expansion, and climate change. We then evaluate the current capacity and infrastructure available to conserve the continent’s biodiversity. We consider four key questions essential for the future of African conservation: (1) how to build societal support for conservation efforts within Africa; (2) how to build Africa’s education, research, and management capacity; (3) how to finance conservation efforts; and (4) is conservation through development the appropriate approach for Africa? While the challenges are great, ways forward are clear, and we present ideas on how progress can be made. Given Africa’s current modest capacity to address its biodiversity crisis, additional international funding is required, but estimates of the cost of conserving Africa’s biodiversity are within reach. The will to act must build on the sympathy for conservation that is evident in Africa, but this will require building the education capacity within the continent. Considering Africa’s rapidly growing population and the associated huge economic needs, options other than conservation through development need to be more effectively explored. Despite the gravity of the situation, we believe that concerted effort in the coming decades can successfully curb the loss of biodiversity in Africa.
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Liu G, Lu X, Liu Z, Xie Z, Qi X, Zhou J, Hong X, Mo Y, Chan BPL, Chapman CA, Jiang Z. The Critically Endangered Hainan Gibbon (Nomascus hainanus) Population Increases but not at the Maximum Possible Rate. INT J PRIMATOL 2022. [DOI: 10.1007/s10764-022-00309-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
AbstractWith the ongoing global biodiversity crisis in the Anthropocene, it is critical to understand how to save endangered species to “bend the curve” of biodiversity decline. The Hainan gibbon (Nomascus hainanus) is a Critically Endangered species that is endemic to Hainan Island. We performed two synchronized total count surveys in Hainan Tropic Rain Forest National Park in November and December of 2020 and 2021 by locating gibbon groups from their morning calls and conducting detailed counts in all potential habitat fragments. We compared our findings with existing data to model the population trend, and analyzed the potential and realized reproductive potentials. We found 5 groups with a total of 33 gibbons in 2020 and 35 in 2021, including 4 and 6 solitary individuals respectively. This is an increase of 169% since 2003, when there were 13 individuals with 2 groups and 2 solitary individuals. Logistic and linear curves fitted the 2003-2021 population census data equally well. Although the population is growing, it has not realized its full reproductive potential (when all adult females give births at 24-month intervals), suggesting that external factors like available habitat, as well as nutritional, physiological, and behavioral factors may be limiting the population. The gibbon’s recovery demonstrates that establishing a nature reserve with regular patrols, banning logging, curbing poaching, and environmental education have been effective. Because the Hainan gibbon population is still extremely small, carefully planned conservation actions, including an ambitious forest restoration program, will be needed to ensure the species’ continued survival.
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