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Cooper JC. Ecological niche divergence or ecological niche partitioning in a widespread Neotropical bird lineage. PeerJ 2024; 12:e17345. [PMID: 38708346 PMCID: PMC11067898 DOI: 10.7717/peerj.17345] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2023] [Accepted: 04/15/2024] [Indexed: 05/07/2024] Open
Abstract
Ecological niche divergence is generally considered to be a facet of evolution that may accompany geographic isolation and diversification in allopatry, contributing to species' evolutionary distinctiveness through time. The null expectation for any two diverging species in geographic isolation is that of niche conservatism, wherein populations do not rapidly shift to or adapt to novel environments. Here, I test ecological niche divergence for a widespread, pan-American lineage, the avian genus of martins (Progne). The genus Progne includes migrant and resident species, as well as geographically restricted taxa and widespread, intercontinentally distributed taxa, thus providing an ideal group in which to study the nature of niche divergence within a broad geographic mosaic. I obtained distributional information for the genus from publicly available databases and created ecological niche models for each species to create pairwise comparisons of environmental space. I combined these data with the most up-to-date phylogeny of Progne currently available to examine the patterns of niche evolution within the genus. I found limited evidence for niche divergence across the breeding distributions of Progne, and much stronger support for niche conservatism with patterns of niche partitioning. The ancestral Progne had a relatively broad ecological niche, like extant basal Progne lineages, and several geographically localized descendant species occupy only portions of this larger ancestral niche. I recovered strong evidence of breeding niche divergence for four of 36 taxon pairs but only one of these divergent pairs involved two widespread species (Southern Martin P. elegans vs. Gray-breasted Martin P. chalybea). Potential niche expansion from the ancestral species was observed in the most wide-ranging present-day species, namely the North American Purple Martin P. subis and P. chalybea. I analyzed populations of P. subis separately, as a microcosm of Progne evolution, and again found only limited evidence of niche divergence. This study adds to the mounting evidence for niche conservatism as a dominant feature of diversifying lineages, and sheds light on the ways in which apparently divergent niches may arise through allopatry while not involving any true niche shifts through evolutionary time. Even taxa that appear unique in terms of habitat or behavior may not be diversifying with respect to their ecological niches, but merely partitioning ancestral niches among descendant taxa.
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Affiliation(s)
- Jacob C. Cooper
- Department of Biology, University of Nebraska at Kearney, Kearney, NE, United States of America
- Biodiversity Institute, University of Kansas, Lawrence, KS, United States of America
- Negaunee Integrative Research Center, Field Museum, Chicago, IL, United States of America
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2
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Cooper JC. Ecological niche divergence or ecological niche partitioning in a widespread Neotropical bird lineage. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.01.18.576294. [PMID: 38328076 PMCID: PMC10849527 DOI: 10.1101/2024.01.18.576294] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/09/2024]
Abstract
Ecological niche divergence is generally considered to be a facet of evolution that may accompany geographic isolation and diversification in allopatry, contributing to species' evolutionary distinctiveness through time. The null expectation for any two diverging species in geographic isolation is that of niche conservatism, wherein populations do not rapidly shift to or adapt to novel environments. Here, I test ecological niche divergence for a widespread, pan-American lineage, the avian genus of martins (Progne). Despite containing species with distributions that go from continent-spanning to locally endemic, I found limited evidence for niche divergence across the breeding distributions of Progne, and much stronger support for niche conservatism with patterns of niche partitioning. The ancestral Progne had a relatively broad ecological niche, similar to extant basal Progne lineages, and several geographically localized descendant species occupy only portions of the larger ancestral Progne niche. I recovered strong evidence of breeding niche divergence for four of 36 taxon pairs but only one of these divergent pairs involved two widespread, continental species (Southern Martin P. elegans vs. Gray-breasted Martin P. chalybea). Potential niche expansion from the ancestral species was observed in the most wide-ranging present-day species, namely the North American Purple Martin P. subis and P. chalybea. I analyzed populations of P. subis separately, as a microcosm of Progne evolution, and again found only limited evidence of niche divergence. This study adds to the mounting evidence for niche conservatism as a dominant feature of diversifying lineages. Even taxa that appear unique in terms of habitat or behavior may still not be diversifying with respect to their ecological niches, but merely partitioning ancestral niches among descendant taxa.
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Affiliation(s)
- Jacob C Cooper
- Biodiversity Institute, University of Kansas, 1400 Jayhawk Boulevard, Lawrence, KS 66045, USA
- Negaunee Integrative Research Center, Field Museum, 1400 S DuSable Lake Shore Drive, Chicago, IL 60605, USA
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3
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Ponti R, Doutrelant C, Covas R. Strength of the 'island rule' in birds is positively associated with absence of avian predators. Biol Lett 2023; 19:20220536. [PMID: 36946130 PMCID: PMC10031422 DOI: 10.1098/rsbl.2022.0536] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2022] [Accepted: 03/03/2023] [Indexed: 03/23/2023] Open
Abstract
The similar characteristics shared by island environments have been shown to lead to common patterns of adaptations in island species, commonly referred to as the 'insularity syndrome'. A well-known example is the 'island rule', where large species become smaller on islands and small species become larger, leading to well-known cases of dwarfism and gigantism. This pattern was recently verified on a global scale, but the mechanisms underlying it have been poorly investigated. Here, we focused on the role of released pressure from predation and competition experienced by island birds. Using 120 pairs of endemic island species and their mainland sister relatives, we first verified that the island rule was detected in our dataset, and then evaluated the effects of the numbers of raptors and interspecific competitors on the evolution of the insular species' body mass. We found a strong effect of predation on body mass evolution, with a stronger island rule for species occurring on islands with no raptors, while the pattern disappears in their presence. However, we did not find an effect of competition on this pattern. Our study shows the importance of considering ecological interactions for understanding patterns of body size evolution, and the exceptions to those patterns.
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Affiliation(s)
- Raquel Ponti
- CIBIO-InBio, Centro de Investigação em Biodiversidade e Recursos Genéticos, Laboratório Associado, University of Porto, Campus Agrário de Vairão, Vairão, 4485-661 Portugal
- BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Campus de Vairão, 4485-661 Vairão, Portugal
- Departamento de Biología Vegetal y Ecología, Universidad del País Vasco/Euskal Herriko Unibertsitatea (UPV/EHU), Leioa, Bizkaia, España
| | | | - Rita Covas
- CIBIO-InBio, Centro de Investigação em Biodiversidade e Recursos Genéticos, Laboratório Associado, University of Porto, Campus Agrário de Vairão, Vairão, 4485-661 Portugal
- BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Campus de Vairão, 4485-661 Vairão, Portugal
- FitzPatrick Institute of African Ornithology, DST-NRF Centre of Excellence, University of Cape Town, Rondebosch 7701, South Africa
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4
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Robert A, Melo M, Lengagne T, Julien S, Gomez D, Doutrelant C. Patterns of bird song evolution on islands support the character release hypothesis in tropical but not in temperate latitudes. J Evol Biol 2021; 34:1580-1591. [PMID: 34510616 DOI: 10.1111/jeb.13928] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2020] [Revised: 09/02/2021] [Accepted: 09/03/2021] [Indexed: 11/30/2022]
Abstract
The character release hypothesis-which predicts that a decline in interspecific competition leads to the expansion of trait expression-remains to be tested for communication signals. Taking advantage of the fact that oceanic islands host fewer species than the mainland, we tested whether island birds show an increase in frequency bandwidth of acoustic signals compared with mainland birds. Given the higher animal diversity and more saturated acoustic space in the tropics, we expected acoustic character release, if any, to be stronger in the tropics than in the temperate zone. We field recorded 22 bird species (11 pairs consisting of an endemic island species and its closest mainland relative) breeding at similar latitudes and in similar habitats: six tropical pairs (São Tomé Island/Mount Cameroon) and five temperate pairs (Madeira Island/southern France). For each species, we measured the degree of acoustic interference experienced when vocalizing and the spectral characteristics of its song (minimum and maximum frequencies, bandwidth). As expected, island species spent more time vocalizing alone, and any overlap in vocalizations involved fewer species. The vocalizations of island species spanned broader frequency bandwidths than their mainland counterparts in the tropics (true for all six pairs), but this pattern was less evident in the temperate region (2/5 pairs with no marked differences and 1/5 with opposite pattern). Overall, the character release of communication signals only occurred where the differential in number of species was large (tropics). We discuss latitude differences and the potential factors driving the observed differences.
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Affiliation(s)
- Aloïs Robert
- CEFE UMR 5175, CNRS - Univ. Montpellier - EPHE, Montpellier, France
| | - Martim Melo
- CIBIO Centro de Investigação em Biodiversidade e Recursos Genéticos, InBio Laboratório Associado, Campus Agrário de Vairão, Universidade do Porto, Vairão, Portugal.,MHNC-UP Museu de História Natural e da Ciência da Universidade do Porto, Porto, Portugal.,FitzPatrick Institute of African Ornithology, DST Centre of Excellence, University of Cape Town, Rondebosch, South Africa
| | - Thierry Lengagne
- UMR 5023 Université de Lyon, Écologie des Hydrosystèmes Naturels et Anthropisés, Université, ENTPE, CNRS, Villeurbanne, France
| | - Sacha Julien
- CEFE UMR 5175, CNRS - Univ. Montpellier - EPHE, Montpellier, France
| | - Doris Gomez
- CEFE UMR 5175, CNRS - Univ. Montpellier - EPHE, Montpellier, France
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5
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Oliveros CH, Andersen MJ, Moyle RG. A phylogeny of white-eyes based on ultraconserved elements. Mol Phylogenet Evol 2021; 164:107273. [PMID: 34333115 DOI: 10.1016/j.ympev.2021.107273] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2021] [Revised: 07/22/2021] [Accepted: 07/27/2021] [Indexed: 10/20/2022]
Abstract
White-eyes are an iconic radiation of passerine birds that have been the subject of studies in evolutionary biology, biogeography, and speciation theory. Zosterops white-eyes in particular are thought to have radiated rapidly across continental and insular regions of the Afro- and Indo-Pacific tropics, yet their phylogenetic history remains equivocal. Here, we sampled 77% of the genera and 47% of known white-eye species and sequenced thousands of ultraconserved elements to infer the phylogeny of the avian family Zosteropidae. We used concatenated maximum likelihood and species tree methods and found strong support for seven clades of white-eyes and three clades within the species-rich Zosterops radiation.
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Affiliation(s)
- Carl H Oliveros
- Department of Ecology and Evolutionary Biology and Biodiversity Institute, University of Kansas, Lawrence, KS 66045, USA
| | - Michael J Andersen
- Department of Biology and Museum of Southwestern Biology, University of New Mexico, Albuquerque, NM 87131, USA
| | - Robert G Moyle
- Department of Ecology and Evolutionary Biology and Biodiversity Institute, University of Kansas, Lawrence, KS 66045, USA.
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Martins FC, Cox SC, Irestedt M, Prŷs-Jones RP, Day JJ. A comprehensive molecular phylogeny of Afrotropical white-eyes (Aves: Zosteropidae) highlights prior underestimation of mainland diversity and complex colonisation history. Mol Phylogenet Evol 2020; 149:106843. [PMID: 32330543 DOI: 10.1016/j.ympev.2020.106843] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2019] [Revised: 04/07/2020] [Accepted: 04/16/2020] [Indexed: 10/24/2022]
Abstract
White-eyes (Zosterops) are a hyper-diverse genus of passerine birds that have rapidly radiated across the Afrotropics and Southeast Asia. Despite their broad range, a disproportionately large number of species are currently recognised from islands compared to the mainland. Described species-level diversity of this 'great speciator' from continental Africa-Arabia is strikingly low, despite the vast size and environmental complexity of this region. However, efforts to identify natural groups using traditional approaches have been hindered by the remarkably uniform morphology and plumage of these birds. Here, we investigated the phylogenetic relationships and systematics of Afrotropical Zosterops, including the Gulf of Guinea and western Indian Ocean islands. We included exceptional sampling (~160 individuals) from all except one subspecies of the 55 taxa (32 species, plus 23 additional named sub-species) currently recognized throughout the region, in addition to a subset of extra-Afrotropical taxa, by exploiting blood and archival samples. Employing a multi-locus phylogenetic approach and applying quantitative species delimitation we tested: (1) if there has been a single colonisation event of the Afrotropical realm; (2) if constituent mainland and island birds are monophyletic; and (3) if mainland diversity has been underestimated. Our comprehensive regional phylogeny revealed a single recent colonisation of the Afrotropical realm c.1.30 Ma from Asia, but a subsequent complex colonisation history between constituent island and mainland lineages during their radiation across this vast area. Our findings suggest a significant previous underestimation of continental species diversity and, based on this, we propose a revised taxonomy. Our study highlights the need to densely sample species diversity across ranges, providing key findings for future conservation assessments and establishing a robust framework for evolutionary studies.
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Affiliation(s)
- Frederico C Martins
- Department of Genetics, Evolution and Environment, University College London, Gower Street, London WC1E 6BT, UK
| | - Siobhan C Cox
- Department of Genetics, Evolution and Environment, University College London, Gower Street, London WC1E 6BT, UK; Bird Group, Department of Life Sciences, The Natural History Museum, Akeman Street, Tring, Herts HP23 6AP, UK
| | - Martin Irestedt
- Department of Bioinformatics and Genetics, Swedish Museum of Natural History, PO Box 50007, Stockholm 10405, Sweden
| | - Robert P Prŷs-Jones
- Bird Group, Department of Life Sciences, The Natural History Museum, Akeman Street, Tring, Herts HP23 6AP, UK
| | - Julia J Day
- Department of Genetics, Evolution and Environment, University College London, Gower Street, London WC1E 6BT, UK.
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Cowles SA, Uy JAC. Rapid, complete reproductive isolation in two closely related
Zosterops
White‐eye bird species despite broadly overlapping ranges*. Evolution 2019; 73:1647-1662. [DOI: 10.1111/evo.13797] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2018] [Accepted: 06/06/2019] [Indexed: 12/13/2022]
Affiliation(s)
- Sarah A. Cowles
- Department of BiologyUniversity of Miami Coral Gables Florida 33146
| | - J. Albert C. Uy
- Department of BiologyUniversity of Miami Coral Gables Florida 33146
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8
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Wijesundara CS, Freed LA. Divergence of morphological characters in two white-eye species (Passeriformes: Zosteropidae) in sympatry. Ecosphere 2018. [DOI: 10.1002/ecs2.2317] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Affiliation(s)
- Chaminda S. Wijesundara
- Department of Zoology; Faculty of Science; University of Peradeniya; Peradeniya 20400 Sri Lanka
| | - Leonard A. Freed
- Department of Biology; University of Hawaii at Manoa; 2538 McCarthy Mall, Edmondson 216 Honolulu Hawaii 96822 USA
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Soares LB, Ceríaco LMP, Marques MP, Bastos-Silveira C, Scheinberg LA, James Harris D, Brehm A, Jesus J. Review of the leaf-litter skinks (Scincidae: Panaspis) from the Gulf of Guinea Oceanic Islands, with the description of a new species. AFR J HERPETOL 2018. [DOI: 10.1080/21564574.2017.1413015] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Affiliation(s)
- Leonor B. Soares
- Departamento de Biologia, Universidade de Évora, Pólo da Mitra, Apartado 94, 7002-554 Évora, Portugal
- Departamento de Zoologia e Antropologia (Museu Bocage), Museu Nacional de História Natural e da Ciência, Universidade de Lisboa, Rua da Escola Politécnica, 58, 1269–102 Lisboa, Portugal
| | - Luis M. P. Ceríaco
- Departamento de Zoologia e Antropologia (Museu Bocage), Museu Nacional de História Natural e da Ciência, Universidade de Lisboa, Rua da Escola Politécnica, 58, 1269–102 Lisboa, Portugal
- Department of Biology, Villanova University, 800 Lancaster Avenue, Villanova, PA 19085-1699, USA
| | - Mariana P. Marques
- Departamento de Zoologia e Antropologia (Museu Bocage), Museu Nacional de História Natural e da Ciência, Universidade de Lisboa, Rua da Escola Politécnica, 58, 1269–102 Lisboa, Portugal
- Centro de Investigação em Biodiversidade e Recursos Genéticos (CIBIO/UP), Campus Agrário de Vairão, 4485-661 Vairão, Portugal
| | - Cristiane Bastos-Silveira
- Departamento de Zoologia e Antropologia (Museu Bocage), Museu Nacional de História Natural e da Ciência, Universidade de Lisboa, Rua da Escola Politécnica, 58, 1269–102 Lisboa, Portugal
| | - Lauren A. Scheinberg
- California Academy of Sciences, 55 Music Concourse Drive, San Francisco, CA 94118, USA
| | - D. James Harris
- Centro de Investigação em Biodiversidade e Recursos Genéticos (CIBIO/UP), Campus Agrário de Vairão, 4485-661 Vairão, Portugal
| | - António Brehm
- Faculdade de Ciências da Vida, Universidade da Madeira, Campus da Penteada, 9000-390 Funchal, Portugal
| | - José Jesus
- Centro de Investigação em Biodiversidade e Recursos Genéticos (CIBIO/UP), Campus Agrário de Vairão, 4485-661 Vairão, Portugal
- Faculdade de Ciências da Vida, Universidade da Madeira, Campus da Penteada, 9000-390 Funchal, Portugal
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos – Polo dos Açores, Faculdade de Ciências e Tecnologias, Universidade dos Açores, R. Mãe de Deus 13A, 9501-801 Ponta Delgada, São Miguel, Açores, Portugal
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10
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Gilbert CM, Bell RC. Evolution of advertisement calls in an island radiation of African reed frogs. Biol J Linn Soc Lond 2017. [DOI: 10.1093/biolinnean/blx129] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
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11
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Loiseau C, Melo M, Lobato E, Beadell JS, Fleischer RC, Reis S, Doutrelant C, Covas R. Insularity effects on the assemblage of the blood parasite community of the birds from the Gulf of Guinea. JOURNAL OF BIOGEOGRAPHY 2017; 44:2607-2617. [PMID: 29104347 PMCID: PMC5663302 DOI: 10.1111/jbi.13060] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
AIM Lower species diversity, increased population densities and ecological niche enlargement are common characteristics of island faunas. However it remains to be determined if they extend to the parasite community. We tested if Haemosporidia parasite pressure varies between islands and the mainland with two different levels of analysis: i) at the host community level, and ii) with paired-species comparisons between islands and the mainland. LOCATION Gulf of Guinea, West Africa. METHODS We used molecular-based methods to identify avian Haemosporidian parasites (Plasmodium, Haemoproteus and Leucocytozoon) to describe their diversity, prevalence, host specificity and their phylogenetic relationships in five islands of the Gulf of Guinea and in nearby mainland areas. RESULTS We found reduced Haemosporidia diversity on islands for Haemoproteus and Leucocytozoon, but not for Plasmodium. In addition, lower parasite prevalence on islands was found using a paired-species approach. Although the mean host specificity of the parasite community on islands did not differ from the mainland, we found a very distinct parasite species assemblage on the islands, which was composed of both the most generalist and the most specialist lineages. MAIN CONCLUSIONS This study supports the hypothesis that parasite pressure is reduced on islands. Colonization is made by generalists with high host switching capacities, with some subsequently evolving into highly specialised parasites. This suggests that 'taxon cycle' dynamics may explain the assemblage of insular parasite communities.
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Affiliation(s)
- Claire Loiseau
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBio, Laboratório Associado, University of Porto. Campus Agrário de Vairão, 4485-661 Vairão, Portugal
- Biology Department, Science Faculty, University of Porto, Rua do Campo Alegre, 4169-007 Porto, Portugal
- CEFE-CNRS, 1919 Route de Mende, 34293 Montpellier, France
| | - Martim Melo
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBio, Laboratório Associado, University of Porto. Campus Agrário de Vairão, 4485-661 Vairão, Portugal
- Percy Fitzpatrick Institute, DST/NRF Centre of Excellence, University of Cape Town, South Africa
| | - Elisa Lobato
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBio, Laboratório Associado, University of Porto. Campus Agrário de Vairão, 4485-661 Vairão, Portugal
- CEFE-CNRS, 1919 Route de Mende, 34293 Montpellier, France
| | - Jon S Beadell
- Center for Conservation Genomics, National Zoological Park, Smithsonian Institution, 3001 Connecticut Ave., NW, Washington, DC 20008 USA
| | - Robert C Fleischer
- Center for Conservation Genomics, National Zoological Park, Smithsonian Institution, 3001 Connecticut Ave., NW, Washington, DC 20008 USA
| | - Sandra Reis
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBio, Laboratório Associado, University of Porto. Campus Agrário de Vairão, 4485-661 Vairão, Portugal
| | | | - Rita Covas
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBio, Laboratório Associado, University of Porto. Campus Agrário de Vairão, 4485-661 Vairão, Portugal
- Biology Department, Science Faculty, University of Porto, Rua do Campo Alegre, 4169-007 Porto, Portugal
- Percy Fitzpatrick Institute, DST/NRF Centre of Excellence, University of Cape Town, South Africa
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Bell RC, Parra JL, Badjedjea G, Barej MF, Blackburn DC, Burger M, Channing A, Dehling JM, Greenbaum E, Gvoždík V, Kielgast J, Kusamba C, Lötters S, McLaughlin PJ, Nagy ZT, Rödel M, Portik DM, Stuart BL, VanDerWal J, Zassi‐Boulou AG, Zamudio KR. Idiosyncratic responses to climate‐driven forest fragmentation and marine incursions in reed frogs from Central Africa and the Gulf of Guinea Islands. Mol Ecol 2017; 26:5223-5244. [DOI: 10.1111/mec.14260] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2017] [Revised: 07/03/2017] [Accepted: 07/12/2017] [Indexed: 01/14/2023]
Affiliation(s)
- Rayna C. Bell
- Department of Vertebrate Zoology National Museum of Natural History Smithsonian Institution Washington DC USA
- Museum of Vertebrate Zoology University of California, Berkeley CA USA
- Department of Ecology and Evolutionary Biology Cornell University Ithaca NY USA
| | - Juan L. Parra
- Grupo de Ecología y Evolución de Vertebrados Instituto de Biología Universidad de Antioquia Medellín Colombia
| | - Gabriel Badjedjea
- Département d'Ecologie et Biodiversité des ressources Aquatiques Centre de Surveillance de la Biodiversité Kisangani Democratic Republic of the Congo
| | - Michael F. Barej
- Museum für Naturkunde ‐ Leibniz Institute for Evolution and Biodiversity Science Berlin Germany
| | - David C. Blackburn
- Florida Museum of Natural History University of Florida Gainesville FL USA
- Department of Herpetology California Academy of Sciences San Francisco CA USA
| | - Marius Burger
- African Amphibian Conservation Research Group Unit for Environmental Sciences and Management North‐West University Potchefstroom South Africa
- Flora Fauna & Man, Ecological Services Ltd. Tortola British Virgin Islands
| | - Alan Channing
- Biodiversity and Conservation Biology Department University of the Western Cape Bellville South Africa
| | - Jonas Maximilian Dehling
- Abteilung Biologie Institut für Integrierte Naturwissenschaften Universität Koblenz‐Landau Koblenz Germany
| | - Eli Greenbaum
- Department of Biological Sciences University of Texas at El Paso El Paso TX USA
| | - Václav Gvoždík
- Institute of Vertebrate Biology Czech Academy of Sciences Brno Czech Republic
- Department of Zoology National Museum Prague Czech Republic
| | - Jos Kielgast
- Section of Freshwater Biology Department of Biology University of Copenhagen Copenhagen Denmark
- Center for Macroecology, Evolution and Climate Natural History Museum of Denmark Copenhagen Denmark
| | - Chifundera Kusamba
- Laboratoire d'Herpétologie Département de Biologie Centre de Recherche en Sciences Naturelles Lwiro Democratic Republic of the Congo
| | | | | | - Zoltán T. Nagy
- Museum für Naturkunde ‐ Leibniz Institute for Evolution and Biodiversity Science Berlin Germany
- Royal Belgian Institute of Natural Sciences Brussels Belgium
| | - Mark‐Oliver Rödel
- Museum für Naturkunde ‐ Leibniz Institute for Evolution and Biodiversity Science Berlin Germany
| | - Daniel M. Portik
- Museum of Vertebrate Zoology University of California, Berkeley CA USA
- Department of Biology University of Texas Arlington TX USA
| | | | - Jeremy VanDerWal
- Centre for Tropical Biodiveristy & Climate Change College of Science and Engineering James Cook University Townsville Qld Australia
- Division of Research and Innovation eResearch Centre James Cook University Townsville Qld Australia
| | | | - Kelly R. Zamudio
- Department of Ecology and Evolutionary Biology Cornell University Ithaca NY USA
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Wickramasinghe N, Robin VV, Ramakrishnan U, Reddy S, Seneviratne SS. Non-sister Sri Lankan white-eyes (genus Zosterops) are a result of independent colonizations. PLoS One 2017; 12:e0181441. [PMID: 28792950 PMCID: PMC5549887 DOI: 10.1371/journal.pone.0181441] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2016] [Accepted: 07/02/2017] [Indexed: 11/18/2022] Open
Abstract
Co-occurrence of closely related taxa on islands could be attributed to sympatric speciation or multiple colonization. Sympatric speciation is considered to be rare in small islands, however multiple colonizations are known to be common in both oceanic and continental islands. In this study we investigated the phylogenetic relatedness and means of origin of the two sympatrically co-occurring Zosterops white-eyes, the endemic Zosterops ceylonensis and its widespread regional congener Z. palpebrosus, in the island of Sri Lanka. Sri Lanka is a continental island in the Indian continental shelf of the Northern Indian Ocean. Our multivariate morphometric analyses confirmed the phenotypic distinctness of the two species. Maximum Likelihood and Bayesian phylogenetic analyses with ~2000bp from two mitochondrial (ND2 and ND3) and one nuclear (TGF) gene indicated that they are phylogenetically distinct, and not sister to each other. The two subspecies of the peninsula India; Z. p. egregius of Sri Lanka and India and Z. p. nilgiriensis of Western Ghats (India) clustered within the Z. palpebrosus clade having a common ancestor. In contrast, the divergence of the endemic Z. ceylonensis appears to be much deeper and is basal to the other Zosterops white-eyes. Therefore we conclude that the two Zosterops species originated in the island through independent colonizations from different ancestral lineages, and not through island speciation or multiple colonization from the same continental ancestral population. Despite high endemism, Sri Lankan biodiversity is long considered to be a subset of southern India. This study on a speciose group with high dispersal ability and rapid diversification rate provide evidence for the contribution of multiple colonizations in shaping Sri Lanka’s biodiversity. It also highlights the complex biogeographic patterns of the South Asian region, reflected even in highly vagile groups such as birds.
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Affiliation(s)
- Nelum Wickramasinghe
- Avian Evolution Node, Department of Zoology and Environment Sciences, Faculty of Science, University of Colombo, Colombo, Sri Lanka
- National Center for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, India
| | - V. V. Robin
- National Center for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, India
| | - Uma Ramakrishnan
- National Center for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, India
| | - Sushma Reddy
- Biology Department, Loyola University Chicago, Chicago, Illinois, United States of America
| | - Sampath S. Seneviratne
- Avian Evolution Node, Department of Zoology and Environment Sciences, Faculty of Science, University of Colombo, Colombo, Sri Lanka
- * E-mail:
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14
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Meimberg H, Schachtler C, Curto M, Husemann M, Habel JC. A new amplicon based approach of whole mitogenome sequencing for phylogenetic and phylogeographic analysis: An example of East African white-eyes (Aves, Zosteropidae). Mol Phylogenet Evol 2016; 102:74-85. [DOI: 10.1016/j.ympev.2016.05.023] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2016] [Revised: 04/27/2016] [Accepted: 05/20/2016] [Indexed: 01/14/2023]
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15
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Pires MM, Silvestro D, Quental TB. Continental faunal exchange and the asymmetrical radiation of carnivores. Proc Biol Sci 2016; 282:20151952. [PMID: 26490792 DOI: 10.1098/rspb.2015.1952] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Lineages arriving on islands may undergo explosive evolutionary radiations owing to the wealth of ecological opportunities. Although studies on insular taxa have improved our understanding of macroevolutionary phenomena, we know little about the macroevolutionary dynamics of continental exchanges. Here we study the evolution of eight Carnivora families that have migrated across the Northern Hemisphere to investigate if continental invasions also result in explosive diversification dynamics. We used a Bayesian approach to estimate speciation and extinction rates from a substantial dataset of fossil occurrences while accounting for the incompleteness of the fossil record. Our analyses revealed a strongly asymmetrical pattern in which North American lineages invading Eurasia underwent explosive radiations, whereas lineages invading North America maintained uniform diversification dynamics. These invasions into Eurasia were characterized by high rates of speciation and extinction. The radiation of the arriving lineages in Eurasia coincide with the decline of established lineages or phases of climate change, suggesting differences in the ecological settings between the continents may be responsible for the disparity in diversification dynamics. These results reveal long-term outcomes of biological invasions and show that the importance of explosive radiations in shaping diversity extends beyond insular systems and have significant impact at continental scales.
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Affiliation(s)
- Mathias M Pires
- Departamento de Ecologia, Instituto de Biociências, Universidade de São Paulo, 11294, 05422-970 São Paulo, Brazil
| | - Daniele Silvestro
- Department of Evolution and Environmental Sciences, University of Gothenburg, Carl Skottsbergs gata 22B, 413 19 Gothenburg, Sweden Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland
| | - Tiago B Quental
- Departamento de Ecologia, Instituto de Biociências, Universidade de São Paulo, 11294, 05422-970 São Paulo, Brazil
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16
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Monteiro M, Reino L, Melo M, Beja P, Bastos-Silveira C, Ramos M, Rodrigues D, Neves IQ, Consciência S, Figueira R. The collection of birds from São Tomé and Príncipe at the Instituto de Investigação Científica Tropical of the University of Lisbon (Portugal). Zookeys 2016:155-67. [PMID: 27408605 PMCID: PMC4926686 DOI: 10.3897/zookeys.600.7899] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2015] [Accepted: 06/02/2016] [Indexed: 11/29/2022] Open
Abstract
The former Instituto de Investigação Científica Tropical-IICT (Lisbon, Portugal), recently integrated into the University of Lisbon, gathers important natural history collections from Portuguese-speaking African countries. In this study, we describe the bird collection from the Democratic Republic of São Tomé and Príncipe, which was fully taxonomically checked and georeferenced. The IICT bird collection contains 5598 specimens, of which 559 are from São Tomé and Príncipe, representing 85 taxa, including 19 endemic species and 13 endemic subspecies of birds. The specimens were collected between 1946 and 1973, although 43% of the records are from 1954 and 45% are from 1970. The geographic distribution of samples covers the whole territory, with a higher number of records from São Tomé than from Príncipe. The districts with highest number of records are Pagué (equivalent to Príncipe Island), and Água Grande and Mé-Zochi on São Tomé. Despite the relatively low number of specimens per taxon, the importance of the collection is considerable due to the high number of endemic and threatened species represented. Furthermore, it adds valuable information to the GBIF network, especially for a country whose two islands are each an Endemic Bird Area and for which substantial gaps in ornithological knowledge remain.
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Affiliation(s)
- Miguel Monteiro
- CIBIO/InBIO-Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Vairão, Portugal; CEABN/InBio, Centro de Ecologia Aplicada "Professor Baeta Neves", Instituto Superior de Agronomia, Universidade de Lisboa, Tapada da Ajuda, 1349-017 Lisboa, Portugal
| | - Luís Reino
- CIBIO/InBIO-Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Vairão, Portugal; CEABN/InBio, Centro de Ecologia Aplicada "Professor Baeta Neves", Instituto Superior de Agronomia, Universidade de Lisboa, Tapada da Ajuda, 1349-017 Lisboa, Portugal
| | - Martim Melo
- CIBIO/InBIO-Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Vairão, Portugal; Percy FitzPatrick Institute of African Ornithology, University of Cape Town, Rondebosch 7701X, South Africas
| | - Pedro Beja
- CIBIO/InBIO-Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Vairão, Portugal; CEABN/InBio, Centro de Ecologia Aplicada "Professor Baeta Neves", Instituto Superior de Agronomia, Universidade de Lisboa, Tapada da Ajuda, 1349-017 Lisboa, Portugal
| | - Cristiane Bastos-Silveira
- Museu Nacional de História Natural e da Ciência, Universidade de Lisboa, Rua da Escola Politécnica 56, 1250-102 Lisboa, Portugal
| | - Manuela Ramos
- MARE-FCUL, DOP/UAç - Departamento Oceanografia e Pescas, Univ. Açores, Rua Prof. Dr. Frederico Machado, 9901-862 Horta, Portugal
| | - Diana Rodrigues
- Museu Nacional de História Natural e da Ciência, Universidade de Lisboa, Rua da Escola Politécnica 56, 1250-102 Lisboa, Portugal
| | - Isabel Queirós Neves
- Museu Nacional de História Natural e da Ciência, Universidade de Lisboa, Rua da Escola Politécnica 56, 1250-102 Lisboa, Portugal; CESAM-Centre for Environmental and Marine Studies, Universidade de Aveiro, 3810-193 Aveiro, Portugal
| | - Susana Consciência
- Estrada de Mem Martins n251 1ºDto, 2725-391 Mem Martins, Sintra, Portugal
| | - Rui Figueira
- CIBIO/InBIO-Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Vairão, Portugal; CEABN/InBio, Centro de Ecologia Aplicada "Professor Baeta Neves", Instituto Superior de Agronomia, Universidade de Lisboa, Tapada da Ajuda, 1349-017 Lisboa, Portugal
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17
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Habel JC, Borghesio L, Newmark WD, Day JJ, Lens L, Husemann M, Ulrich W. Evolution along the Great Rift Valley: phenotypic and genetic differentiation of East African white-eyes (Aves, Zosteropidae). Ecol Evol 2015; 5:4849-62. [PMID: 26640665 PMCID: PMC4662327 DOI: 10.1002/ece3.1735] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2015] [Revised: 07/29/2015] [Accepted: 08/22/2015] [Indexed: 02/01/2023] Open
Abstract
The moist and cool cloud forests of East Africa represent a network of isolated habitats that are separated by dry and warm lowland savannah, offering an opportunity to investigate how strikingly different selective regimes affect species diversification. Here, we used the passerine genus Zosterops (white-eyes) from this region as our model system. Species of the genus occur in contrasting distribution settings, with geographical mountain isolation driving diversification, and savannah interconnectivity preventing differentiation. We analyze (1) patterns of phenotypic and genetic differentiation in high- and lowland species (different distribution settings), (2) investigate the potential effects of natural selection and temporal and spatial isolation (evolutionary drivers), and (3) critically review the taxonomy of this species complex. We found strong phenotypic and genetic differentiation among and within the three focal species, both in the highland species complex and in the lowland taxa. Altitude was a stronger predictor of phenotypic patterns than the current taxonomic classification. We found longitudinal and latitudinal phenotypic gradients for all three species. Furthermore, wing length and body weight were significantly correlated with altitude and habitat type in the highland species Z. poliogaster. Genetic and phenotypic divergence showed contrasting inter- and intraspecific structures. We suggest that the evolution of phenotypic characters is mainly driven by natural selection due to differences in the two macro-habitats, cloud forest and savannah. In contrast, patterns of neutral genetic variation appear to be rather driven by geographical isolation of the respective mountain massifs. Populations of the Z. poliogaster complex, as well as Z. senegalensis and Z. abyssinicus, are not monophyletic based on microsatellite data and have higher levels of intraspecific differentiation compared to the currently accepted species.
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Affiliation(s)
- Jan Christian Habel
- Terrestrial Ecology Research Group Department of Ecology and Ecosystem Management School of Life Sciences Weihenstephan Technische Universität München D-85354 Freising Germany
| | | | - William D Newmark
- Natural History Museum of Utah University of Utah Salt Lake City Utah 84108
| | - Julia J Day
- Department of Genetics, Evolution and Environment University College London London WC1E 6BT U.K
| | - Luc Lens
- Terrestrial Ecology Unit Department of Biology Ghent University B-9000 Ghent Belgium
| | - Martin Husemann
- General Zoology Martin-Luther University Halle-Wittenberg D-06120 Halle (Saale) Germany
| | - Werner Ulrich
- Chair of Ecology and Biogeography Nicolaus Copernicus University in Toruń Pl-87-100 Toruń Poland
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18
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Cornetti L, Valente LM, Dunning LT, Quan X, Black RA, Hébert O, Savolainen V. The Genome of the "Great Speciator" Provides Insights into Bird Diversification. Genome Biol Evol 2015; 7:2680-91. [PMID: 26338191 PMCID: PMC4607525 DOI: 10.1093/gbe/evv168] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/02/2015] [Indexed: 12/29/2022] Open
Abstract
Among birds, white-eyes (genus Zosterops) have diversified so extensively that Jared Diamond and Ernst Mayr referred to them as the "great speciator." The Zosterops lineage exhibits some of the fastest rates of species diversification among vertebrates, and its members are the most prolific passerine island colonizers. We present a high-quality genome assembly for the silvereye (Zosterops lateralis), a white-eye species consisting of several subspecies distributed across multiple islands. We investigate the genetic basis of rapid diversification in white-eyes by conducting genomic analyses at varying taxonomic levels. First, we compare the silvereye genome with those of birds from different families and searched for genomic features that may be unique to Zosterops. Second, we compare the genomes of different species of white-eyes from Lifou island (South Pacific), using whole genome resequencing and restriction site associated DNA. Third, we contrast the genomes of two subspecies of silvereye that differ in plumage color. In accordance with theory, we show that white-eyes have high rates of substitutions, gene duplication, and positive selection relative to other birds. Below genus level, we find that genomic differentiation accumulates rapidly and reveals contrasting demographic histories between sympatric species on Lifou, indicative of past interspecific interactions. Finally, we highlight genes possibly involved in color polymorphism between the subspecies of silvereye. By providing the first whole-genome sequence resources for white-eyes and by conducting analyses at different taxonomic levels, we provide genomic evidence underpinning this extraordinary bird radiation.
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Affiliation(s)
- Luca Cornetti
- Department of Life Sciences, Imperial College London, Ascot, United Kingdom
| | - Luis M Valente
- Department of Life Sciences, Imperial College London, Ascot, United Kingdom Unit of Evolutionary Biology/Systematic Zoology, Institute of Biochemistry and Biology, University of Potsdam, Potsdam, Germany
| | - Luke T Dunning
- Department of Life Sciences, Imperial College London, Ascot, United Kingdom
| | - Xueping Quan
- Department of Life Sciences, Imperial College London, Ascot, United Kingdom
| | - Richard A Black
- Department of Life Sciences, Imperial College London, Ascot, United Kingdom Royal Society for the Protection of Birds, Pavilion View, Brighton, Bedfordshire, United Kingdom NERC Biomolecular Analysis Facility (NBAF) Department of Animal & Plant Sciences, University of Sheffield, Sheffield, United Kingdom
| | - Olivier Hébert
- Waco me Wela Association, Tribu de Luecila, Lifou, New Caledonia
| | - Vincent Savolainen
- Department of Life Sciences, Imperial College London, Ascot, United Kingdom
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19
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Fuchs J, Bowie RC. Concordant genetic structure in two species of woodpecker distributed across the primary West African biogeographic barriers. Mol Phylogenet Evol 2015; 88:64-74. [DOI: 10.1016/j.ympev.2015.03.011] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2014] [Revised: 03/10/2015] [Accepted: 03/12/2015] [Indexed: 12/21/2022]
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20
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Stervander M, Illera JC, Kvist L, Barbosa P, Keehnen NP, Pruisscher P, Bensch S, Hansson B. Disentangling the complex evolutionary history of the Western Palearctic blue tits (Cyanistes spp.) - phylogenomic analyses suggest radiation by multiple colonization events and subsequent isolation. Mol Ecol 2015; 24:2477-94. [PMID: 25753616 DOI: 10.1111/mec.13145] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2014] [Revised: 02/20/2015] [Accepted: 02/25/2015] [Indexed: 01/16/2023]
Abstract
Isolated islands and their often unique biota continue to play key roles for understanding the importance of drift, genetic variation and adaptation in the process of population differentiation and speciation. One island system that has inspired and intrigued evolutionary biologists is the blue tit complex (Cyanistes spp.) in Europe and Africa, in particular the complex evolutionary history of the multiple genetically distinct taxa of the Canary Islands. Understanding Afrocanarian colonization events is of particular importance because of recent unconventional suggestions that these island populations acted as source of the widespread population in mainland Africa. We investigated the relationship between mainland and island blue tits using a combination of Sanger sequencing at a population level (20 loci; 12 500 nucleotides) and next-generation sequencing of single population representatives (>3 200 000 nucleotides), analysed in coalescence and phylogenetic frameworks. We found (i) that Afrocanarian blue tits are monophyletic and represent four major clades, (ii) that the blue tit complex has a continental origin and that the Canary Islands were colonized three times, (iii) that all island populations have low genetic variation, indicating low long-term effective population sizes and (iv) that populations on La Palma and in Libya represent relicts of an ancestral North African population. Further, demographic reconstructions revealed (v) that the Canary Islands, conforming to traditional views, hold sink populations, which have not served as source for back colonization of the African mainland. Our study demonstrates the importance of complete taxon sampling and an extensive multimarker study design to obtain robust phylogeographical inferences.
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Affiliation(s)
- Martin Stervander
- Molecular Ecology and Evolution Lab, Department of Biology, Lund University, Ecology Building, 223 62, Lund, Sweden
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21
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Bell RC, Drewes RC, Zamudio KR. Reed frog diversification in the Gulf of Guinea: Overseas dispersal, the progression rule, and in situ speciation. Evolution 2015; 69:904-15. [DOI: 10.1111/evo.12623] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2014] [Accepted: 01/03/2015] [Indexed: 01/15/2023]
Affiliation(s)
- Rayna C. Bell
- Department of Ecology and Evolutionary Biology; Cornell University; Ithaca New York 14853-2701
| | - Robert C. Drewes
- Herpetology California Academy of Sciences; San Francisco California 94118
| | - Kelly R. Zamudio
- Department of Ecology and Evolutionary Biology; Cornell University; Ithaca New York 14853-2701
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22
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Ceríaco LM, Marques MP, Jacquet F, Nicolas V, Colyn M, Denys C, Sardinha PC, Bastos-Silveira C. Description of a new endemic species of shrew (Mammalia, Soricomorpha) from PrÍncipe Island (Gulf of Guinea). MAMMALIA 2015. [DOI: 10.1515/mammalia-2014-0056] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Abstract
AbstractSão Tomé and Príncipe are unique islands off the Gulf of Guinea on account of the high degree of endemism in these areas due to isolation. These islands are known to harbor, among others, two species of shrews of the genus
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23
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Stoelting RE, Measey GJ, Drewes RC. Population genetics of the São Tomé caecilian (Gymnophiona: Dermophiidae: Schistometopum thomense) reveals strong geographic structuring. PLoS One 2014; 9:e104628. [PMID: 25171066 PMCID: PMC4149351 DOI: 10.1371/journal.pone.0104628] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2013] [Accepted: 07/15/2014] [Indexed: 11/18/2022] Open
Abstract
Islands provide exciting opportunities for exploring ecological and evolutionary mechanisms. The oceanic island of São Tomé in the Gulf of Guinea exhibits high diversity of fauna including the endemic caecilian amphibian, Schistometopum thomense. Variation in pigmentation, morphology and size of this taxon over its c. 45 km island range is extreme, motivating a number of taxonomic, ecological, and evolutionary hypotheses to explain the observed diversity. We conducted a population genetic study of S. thomense using partial sequences of two mitochondrial DNA genes (ND4 and 16S), together with morphological examination, to address competing hypotheses of taxonomic or clinal variation. Using Bayesian phylogenetic analysis and Spatial Analysis of Molecular Variance, we found evidence of four geographic clades, whose range and approximated age (c. 253 Kya – 27 Kya) are consistent with the spread and age of recent volcanic flows. These clades explained 90% of variation in ND4 (φCT = 0.892), and diverged by 4.3% minimum pairwise distance at the deepest node. Most notably, using Mismatch Distributions and Mantel Tests, we identified a zone of population admixture that dissected the island. In the northern clade, we found evidence of recent population expansion (Fu's Fs = −13.08 and Tajima's D = −1.80) and limited dispersal (Mantel correlation coefficient = 0.36, p = 0.01). Color assignment to clades was not absolute. Paired with multinomial regression of chromatic data, our analyses suggested that the genetic groups and a latitudinal gradient together describe variation in color of S. thomense. We propose that volcanism and limited dispersal ability are the likely proximal causes of the observed genetic structure. This is the first population genetic study of any caecilian and demonstrates that these animals have deep genetic divisions over very small areas in accordance with previous speculations of low dispersal abilities.
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Affiliation(s)
- Ricka E. Stoelting
- Department of Herpetology, California Academy of Sciences, San Francisco, California, United States of America
- Department of Forest and Wildlife Ecology, University of Wisconsin, Madison, Wisconsin, United States of America
- * E-mail:
| | - G. John Measey
- Centre for Invasion Biology, Department of Botany and Zoology, University of Stellenbosch, Stellenbosch, South Africa
| | - Robert C. Drewes
- Department of Herpetology, California Academy of Sciences, San Francisco, California, United States of America
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Cox SC, Prys-Jones RP, Habel JC, Amakobe BA, Day JJ. Niche divergence promotes rapid diversification of East African sky island white-eyes (Aves: Zosteropidae). Mol Ecol 2014; 23:4103-18. [PMID: 24954273 PMCID: PMC4255762 DOI: 10.1111/mec.12840] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2013] [Revised: 06/16/2014] [Accepted: 06/17/2014] [Indexed: 12/01/2022]
Abstract
The Eastern Afromontane biodiversity hotspot composed of highly fragmented forested highlands (sky islands) harbours exceptional diversity and endemicity, particularly within birds. To explain their elevated diversity within this region, models founded on niche conservatism have been offered, although detailed phylogeographic studies are limited to a few avian lineages. Here, we focus on the recent songbird genus Zosterops, represented by montane and lowland members, to test the roles of niche conservatism versus niche divergence in the diversification and colonization of East Africa's sky islands. The species-rich white-eyes are a typically homogeneous family with an exceptional colonizing ability, but in contrast to their diversity on oceanic islands, continental diversity is considered depauperate and has been largely neglected. Molecular phylogenetic analysis of ~140 taxa reveals extensive polyphyly among different montane populations of Z. poliogastrus. These larger endemic birds are shown to be more closely related to taxa with divergent habitat types, altitudinal distributions and dispersal abilities than they are to populations of restricted endemics that occur in neighbouring montane forest fragments. This repeated transition between lowland and highland habitats over time demonstrate that diversification of the focal group is explained by niche divergence. Our results also highlight an underestimation of diversity compared to morphological studies that has implications for their taxonomy and conservation. Molecular dating suggests that the spatially extensive African radiation arose exceptionally rapidly (1-2.5 Ma) during the fluctuating Plio-Pleistocene climate, which may have provided the primary driver for lineage diversification.
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Affiliation(s)
- Siobhan C Cox
- Department of Genetics, Evolution and Environment, University College London, Gower Street, London, WC1E 6BT, UK; Bird Group, Department of Life Sciences, The Natural History Museum, Akeman Street, Tring, Hertfordshire, HP23 6AP, UK
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25
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Hosner PA, Sánchez-González LA, Peterson AT, Moyle RG. CLIMATE-DRIVEN DIVERSIFICATION AND PLEISTOCENE REFUGIA IN PHILIPPINE BIRDS: EVIDENCE FROM PHYLOGEOGRAPHIC STRUCTURE AND PALEOENVIRONMENTAL NICHE MODELING. Evolution 2014; 68:2658-74. [DOI: 10.1111/evo.12459] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2013] [Accepted: 05/20/2014] [Indexed: 11/29/2022]
Affiliation(s)
- Peter A. Hosner
- Department of Ecology and Evolutionary Biology; University of Kansas; Lawrence Kansas 66045
- Biodiversity Institute; University of Kansas; Lawrence Kansas 66045
| | - Luis A. Sánchez-González
- Biodiversity Institute; University of Kansas; Lawrence Kansas 66045
- Museo de Zoología; Facultad de Ciencias, Universidad Nacional Autónoma de México; Ciudad de México DF 04510 México
| | - A. Townsend Peterson
- Department of Ecology and Evolutionary Biology; University of Kansas; Lawrence Kansas 66045
- Biodiversity Institute; University of Kansas; Lawrence Kansas 66045
| | - Robert G. Moyle
- Department of Ecology and Evolutionary Biology; University of Kansas; Lawrence Kansas 66045
- Biodiversity Institute; University of Kansas; Lawrence Kansas 66045
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26
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Peel AJ, Sargan DR, Baker KS, Hayman DTS, Barr JA, Crameri G, Suu-Ire R, Broder CC, Lembo T, Wang LF, Fooks AR, Rossiter SJ, Wood JLN, Cunningham AA. Continent-wide panmixia of an African fruit bat facilitates transmission of potentially zoonotic viruses. Nat Commun 2014; 4:2770. [PMID: 24253424 PMCID: PMC3836177 DOI: 10.1038/ncomms3770] [Citation(s) in RCA: 83] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2013] [Accepted: 10/15/2013] [Indexed: 12/23/2022] Open
Abstract
The straw-coloured fruit bat, Eidolon helvum, is Africa’s most widely distributed and commonly hunted fruit bat, often living in close proximity to human populations. This species has been identified as a reservoir of potentially zoonotic viruses, but uncertainties remain regarding viral transmission dynamics and mechanisms of persistence. Here we combine genetic and serological analyses of populations across Africa, to determine the extent of epidemiological connectivity among E. helvum populations. Multiple markers reveal panmixia across the continental range, at a greater geographical scale than previously recorded for any other mammal, whereas populations on remote islands were genetically distinct. Multiple serological assays reveal antibodies to henipaviruses and Lagos bat virus in all locations, including small isolated island populations, indicating that factors other than population size and connectivity may be responsible for viral persistence. Our findings have potentially important public health implications, and highlight a need to avoid disturbances which may precipitate viral spillover.
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Affiliation(s)
- Alison J Peel
- Department of Veterinary Medicine, University of Cambridge, Cambridge, CB3 0ES, UK.,Institute of Zoology, Zoological Society of London, Regent's Park, London, NW1 4RY, UK
| | - David R Sargan
- Department of Veterinary Medicine, University of Cambridge, Cambridge, CB3 0ES, UK
| | - Kate S Baker
- Department of Veterinary Medicine, University of Cambridge, Cambridge, CB3 0ES, UK.,Institute of Zoology, Zoological Society of London, Regent's Park, London, NW1 4RY, UK.,Wellcome Trust Sanger Institute, A1301, Hinxton, Cambridgeshire, CB101SA, UK
| | - David T S Hayman
- Department of Veterinary Medicine, University of Cambridge, Cambridge, CB3 0ES, UK.,Institute of Zoology, Zoological Society of London, Regent's Park, London, NW1 4RY, UK.,Wildlife Zoonoses and Vector-Borne Diseases Research Group, Department of Virology, Animal Health and Veterinary Laboratories Agency, Weybridge, New Haw, Addlestone, Surrey, KT15 3NB, UK.,Department of Biology, Colorado State University, Fort Collins, Colorado, CO 80523, USA.,Department of Biology, University of Florida, Gainesville, FL 32611, USA
| | - Jennifer A Barr
- CSIRO Australian Animal Health Laboratory, Geelong, Victoria, 3220, Australia
| | - Gary Crameri
- CSIRO Australian Animal Health Laboratory, Geelong, Victoria, 3220, Australia
| | - Richard Suu-Ire
- Wildlife Division, Ghana Forestry Commission, Accra, Ghana.,University of Ghana, Faculty of Animal Biology and Conservation Science, Box LG 571, Legon, Accra, Ghana
| | - Christopher C Broder
- Department of Microbiology and Immunology, Uniformed Services University, Bethesda, Maryland, 20814-4799, USA
| | - Tiziana Lembo
- Boyd Orr Centre for Population and Ecosystem Health, Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, G12 8QQ, U.K
| | - Lin-Fa Wang
- CSIRO Australian Animal Health Laboratory, Geelong, Victoria, 3220, Australia.,Duke-NUS Graduate Medical School, Singapore 169857
| | - Anthony R Fooks
- Department of Biology, Colorado State University, Fort Collins, Colorado, CO 80523, USA.,University of Clinical Infection, Microbiology and Immunology, Liverpool, L3 5TQ, UK
| | - Stephen J Rossiter
- School of Biological and Chemical Sciences, Queen Mary University of London, London, E1 4NS, UK
| | - James L N Wood
- Department of Veterinary Medicine, University of Cambridge, Cambridge, CB3 0ES, UK
| | - Andrew A Cunningham
- Institute of Zoology, Zoological Society of London, Regent's Park, London, NW1 4RY, UK
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Husemann M, Ulrich W, Habel JC. The evolution of contact calls in isolated and overlapping populations of two white-eye congeners in East Africa (Aves, Zosterops). BMC Evol Biol 2014; 14:115. [PMID: 24885807 PMCID: PMC4057569 DOI: 10.1186/1471-2148-14-115] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2013] [Accepted: 05/14/2014] [Indexed: 11/10/2022] Open
Abstract
Background Closely related species often occur in geographic isolation, yet sometimes form contact zones with the potential to hybridize. Pre-zygotic barriers may prevent cross breeding in such contact zones. In East Africa, White-eye birds have evolved into various species, inhabiting different habitat types. Zosterops poliogaster is found in cool and moist cloud forests at higher elevations, whereas Z. abyssinicus is distributed across the dry and hot lowland savannahs. In most areas, these two species occur allopatrically, but in the contact zone where the mountain meets the savannah, the distributions of these species sometimes overlap (parapatry), and in a few areas the two taxa occur sympatrically. Acoustic communication is thought to be an important species recognition mechanism in birds and an effective prezygotic barrier for hybridisation. We recorded contact calls of both the lowland and highland species in (i) distinct populations (allopatry), (ii) along contact zones (parapatry), and (iii) in overlapping populations (sympatry) to test for species and population differentiation. Results We found significant differences in call characteristics between the highland and lowland species, in addition to call differentiation within species. The highland Z. poliogaster shows a strong call differentiation among local populations, accompanied by comparatively low variability in their contact calls within populations (i.e. a small acoustic space). In contrast, calls of the lowland Z. abyssinicus are not differentiated among local sites but show relatively high variability in calls within single populations. Call patterns in both species show geographic clines in relation to latitude and longitude. Calls from parapatric populations from both species showed greater similarity to the other taxon in comparison to heterospecific populations found in allopatry. However, where the two species occur sympatrically, contact calls of both species are more distinct from each other than in either allopatric or parapatric populations. Conclusion The contrasting patterns reflect divergent spatial distributions: the highland Z. poliogaster populations are highly disjunct, while Z. abyssinicus lowland populations are interconnected. Higher similarity in contact calls of heterospecific populations might be due to intermixing. In contrast, sympatric populations show reproductive character displacement which leads to strongly divergent call patterns.
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Affiliation(s)
| | | | - Jan Christian Habel
- Terrestrial Ecology Research Group, Department of Ecology and Ecosystem Management, Technische Universität München, Hans-Carl-von-Carlowitz-Platz 2, D-85354 Freising-Weihenstephan, Germany.
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Illera JC, Palmero AM, Laiolo P, Rodríguez F, Moreno ÁC, Navascués M. Genetic, morphological, and acoustic evidence reveals lack of diversification in the colonization process in an island bird. Evolution 2014; 68:2259-74. [PMID: 24749863 DOI: 10.1111/evo.12429] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2013] [Revised: 03/30/2014] [Accepted: 03/31/2014] [Indexed: 11/28/2022]
Abstract
Songbirds with recently (i.e., early Holocene) founded populations are suitable models for studying incipient differentiation in oceanic islands. On such systems each colonization event represents a different evolutionary episode that can be studied by addressing sets of diverging phenotypic and genetic traits. We investigate the process of early differentiation in the spectacled warbler (Sylvia conspicillata) in 14 populations separated by sea barriers from three Atlantic archipelagos and from continental regions spanning from tropical to temperate latitudes. Our approach involved the study of sexual acoustic signals, morphology, and genetic data. Mitochondrial DNA did not provide clear population structure. However, microsatellites analyses consistently identified two genetic groups, albeit without correspondence to subspecies classification and little correspondence to geography. Coalescent analyses showed significant evidence for gene flow between the two genetic groups. Discriminant analyses could not correctly assign morphological or acoustic traits to source populations. Therefore, although theory predicting that in isolated populations genetic, morphological, or acoustic traits can lead to radiation, we have strikingly failed to document differentiation on these attributes in a resident passerine throughout three oceanic archipelagos.
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Affiliation(s)
- Juan Carlos Illera
- Research Unit of Biodiversity (UO-CSIC-PA), Oviedo University, Campus of Mieres, Research Building, 5th Floor, C/Gonzalo Gutiérrez Quirós, s/n, 33600 Mieres, Asturias, Spain; Island Ecology and Evolution Research Group, IPNA, CSIC, 38206 La Laguna, Tenerife, Canary Islands, Spain. ,
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29
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Habel JC, Ulrich W, Peters G, Husemann M, Lens L. Lowland panmixia versus highland disjunction: genetic and bioacoustic differentiation in two species of East African White-eye birds. CONSERV GENET 2014. [DOI: 10.1007/s10592-014-0567-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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30
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Ryan PG, Klicka LB, Barker KF, Burns KJ. The origin of finches on Tristan da Cunha and Gough Island, central South Atlantic ocean. Mol Phylogenet Evol 2013; 69:299-305. [DOI: 10.1016/j.ympev.2013.05.026] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2013] [Revised: 05/23/2013] [Accepted: 05/31/2013] [Indexed: 11/28/2022]
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Rocha S, Posada D, Harris DJ. Phylogeography and diversification history of the day-gecko genus Phelsuma in the Seychelles islands. BMC Evol Biol 2013; 13:3. [PMID: 23289814 PMCID: PMC3598968 DOI: 10.1186/1471-2148-13-3] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2012] [Accepted: 12/17/2012] [Indexed: 12/27/2022] Open
Abstract
BACKGROUND Lying in a shallow continental shelf cyclically affected by oscillating sea levels since the Miocene, the Seychelles islands are particularly interesting for evolutionary studies. Recent molecular studies are generating an emerging picture of the origin of its biota, yet very little is known regarding their phylogeographic structure or on the factors promoting diversification within the archipelago. Here we aimed to obtain a detailed depiction of the genetic structure and evolution of one of the most widespread vertebrate groups in the archipelago: the day-geckos of the genus Phelsuma. In parallel, we aimed to infer divergence times between species and subspecies, testing a long-standing hypothesis that argues for different time since sympatry between species as the cause of their different morphological differentiation across the archipelago. RESULTS Molecular data corroborated the existence of two main lineages, corresponding to the two currently recognized species. Divergences between species likely date back to the Mio-Pliocene, while more recent, Pleistocenic, divergences are suggested within each species. Populations from outer islands share mtDNA haplotypes with inner island populations, suggesting very recent dispersals (or introductions). We found no evidence of current gene flow between species, but results pointed to the possibility of gene flow between (now allopatric) subspecies. Time estimates suggest a synchronous divergence within each species (between island groups). CONCLUSIONS The geographic patterns of genetic variation agree with previous taxonomic subdivisions within each species and the origin of outer islands populations is clearly tracked. The similar intraspecific divergence time estimates obtained suggest that the differential body-size differentiation between species within each group of islands may be driven by factors other than character displacement proportional to time since sympatry, as previously suggested. These factors could include different habitats/resources available within each island group, niche differentiation and/or character displacement. We also bring again into consideration the hypothesis of body size being influenced by the distribution of native vegetation and social systems within this group, although it remains to be tested. Our results highlight not only the necessity of clarifying the role of ecology and interspecific interactions in this group's morphological diversification and community assemblage, but also the importance of co-evolutionary mechanisms and their importance for appropriate conservation of island biodiversity. Further, we provide a detailed description of the phylogeographic structure of these taxa across these islands, which still remain poorly characterized in this respect.
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Affiliation(s)
- Sara Rocha
- CIBIO-UP, Centro de Investigação em Biodiversidade e Recursos Genéticos, Campus Agrário de Vairão, Vairão 4485-661, Portugal
- Departamento de Biologia, Faculdade de Ciências, Rua do Campo Alegre, Porto FC4 4169-007, Portugal
- Departamento de Bioquímica, Genética e Inmunología, Facultad de Biología, Universidad de Vigo, Vigo 36310, Spain
| | - David Posada
- CIBIO-UP, Centro de Investigação em Biodiversidade e Recursos Genéticos, Campus Agrário de Vairão, Vairão 4485-661, Portugal
- Departamento de Bioquímica, Genética e Inmunología, Facultad de Biología, Universidad de Vigo, Vigo 36310, Spain
| | - D James Harris
- CIBIO-UP, Centro de Investigação em Biodiversidade e Recursos Genéticos, Campus Agrário de Vairão, Vairão 4485-661, Portugal
- Departamento de Biologia, Faculdade de Ciências, Rua do Campo Alegre, Porto FC4 4169-007, Portugal
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Oatley G, Voelker G, Crowe TM, Bowie RCK. A multi-locus phylogeny reveals a complex pattern of diversification related to climate and habitat heterogeneity in southern African white-eyes. Mol Phylogenet Evol 2012; 64:633-44. [PMID: 22659517 DOI: 10.1016/j.ympev.2012.05.022] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2012] [Revised: 05/20/2012] [Accepted: 05/21/2012] [Indexed: 11/17/2022]
Abstract
The recent, rapid radiation of Zosteropidae, coupled with their high levels of colonizing ability and phenotypic diversity, makes species delimitation within this family problematic. Given these problems, challenges to establish the mechanisms driving diversity and speciation within this group have arisen. Four morphologically distinct southern African Zosterops taxa, with a contentious taxonomic past, provide such a challenge. Here, supplemented with morphological and environmental analytical techniques, a combination of mitochondrial and nuclear markers were analyzed using Bayesian and Likelihood methods to determine their speciation patterns and to establish the phylogenetic relationships of these four morphologically diverse southern African Zosterops taxa. Nearly all individuals were phenotypically diagnosable, even those individuals collected in areas of contact between taxa. Localities where two or more taxa co-occur appear to possess intermediate environmental characteristics. Initial Bayesian and Likelihood mitochondrial DNA analyses and Bayesian structure analyses of the combined nuclear markers indicated levels of hybridization in areas of sympatry. A combined mtDNA and nuclear DNA analysis and a species tree analysis (with hybrids excluded) placed Z. pallidus as sister to the other southern African taxa, with Z. senegalensis the putative sister taxon to a clade comprising Z. capensis and Z. virens. The grouping of taxon-specific sampling localities and the apparent intermediate nature of birds from areas of sympatry points toward an influence of habitat type and the associated climatic conditions in driving Zosterops diversification in southern Africa.
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Affiliation(s)
- Graeme Oatley
- Percy FitzPatrick Institute, DST/NRF Centre of Excellence, University of Cape Town, Rondebosch 7701, South Africa.
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Abstract
If island biogeography has a sweet spot, it's where islands generate their own species diversity rather than merely taking on mainland immigrants. In birds and other highly dispersive taxa, however, this 'zone of radiation', may be vanishingly small. Darwin's finches and Hawaiian Honeycreepers are among only a handful of examples of island radiation in birds (Price 2008), suggesting that winged powers of dispersal make sufficient isolation from mainland colonists unlikely, while also hindering speciation within and among isolated islands. Nevertheless, two studies in this issue of Molecular Ecology join a string of other recent analyses suggesting that island radiation in birds remains under-appreciated (see also Moyle et al. 2009; Kisel & Barraclough 2010; Rosindell & Phillimore 2011). Melo et al. (2011) use a phylogenetic analysis of white-eyes on islands in the Gulf of Guinea to identify two previously overlooked island radiations, and reveal replicated adaptive divergence on islands where species occur in pairs. Sly et al. (2011), meanwhile, consider possible explanations for speciation and geographic differentiation within a large island, and find the same type of oceanic barriers that are critical to bird speciation across archipelagos may also contribute to divergence that appears to have occurred within a single island.
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Affiliation(s)
- Richard E Glor
- Department of Biology, University of Rochester, RC Box 270211, Rochester, NY 14627, USA.
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