1
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Krueger-Hadfield SA. Let's talk about sex: Why reproductive systems matter for understanding algae. JOURNAL OF PHYCOLOGY 2024; 60:581-597. [PMID: 38743848 DOI: 10.1111/jpy.13462] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2024] [Revised: 04/23/2024] [Accepted: 04/24/2024] [Indexed: 05/16/2024]
Abstract
Sex is a crucial process that has molecular, genetic, cellular, organismal, and population-level consequences for eukaryotic evolution. Eukaryotic life cycles are composed of alternating haploid and diploid phases but are constrained by the need to accommodate the phenotypes of these different phases. Critical gaps in our understanding of evolutionary drivers of the diversity in algae life cycles include how selection acts to stabilize and change features of the life cycle. Moreover, most eukaryotes are partially clonal, engaging in both sexual and asexual reproduction. Yet, our understanding of the variation in their reproductive systems is largely based on sexual reproduction in animals or angiosperms. The relative balance of sexual versus asexual reproduction not only controls but also is in turn controlled by standing genetic variability, thereby shaping evolutionary trajectories. Thus, we must quantitatively assess the consequences of the variation in life cycles on reproductive systems. Algae are a polyphyletic group spread across many of the major eukaryotic lineages, providing powerful models by which to resolve this knowledge gap. There is, however, an alarming lack of data about the population genetics of most algae and, therefore, the relative frequency of sexual versus asexual processes. For many algae, the occurrence of sexual reproduction is unknown, observations have been lost in overlooked papers, or data on population genetics do not yet exist. This greatly restricts our ability to forecast the consequences of climate change on algal populations inhabiting terrestrial, aquatic, and marine ecosystems. This perspective summarizes our extant knowledge and provides some future directions to pursue broadly across micro- and macroalgal species.
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2
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Bendif EM, Probert I, Archontikis OA, Young JR, Beaufort L, Rickaby RE, Filatov D. Rapid diversification underlying the global dominance of a cosmopolitan phytoplankton. THE ISME JOURNAL 2023; 17:630-640. [PMID: 36747097 PMCID: PMC10030636 DOI: 10.1038/s41396-023-01365-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2022] [Revised: 01/10/2023] [Accepted: 01/11/2023] [Indexed: 02/08/2023]
Abstract
Marine phytoplankton play important roles in the global ecosystem, with a limited number of cosmopolitan keystone species driving their biomass. Recent studies have revealed that many of these phytoplankton are complexes composed of sibling species, but little is known about the evolutionary processes underlying their formation. Gephyrocapsa huxleyi, a widely distributed and abundant unicellular marine planktonic algae, produces calcified scales (coccoliths), thereby significantly affects global biogeochemical cycles via sequestration of inorganic carbon. This species is composed of morphotypes defined by differing degrees of coccolith calcification, the evolutionary ecology of which remains unclear. Here, we report an integrated morphological, ecological and genomic survey across globally distributed G. huxleyi strains to reconstruct evolutionary relationships between morphotypes in relation to their habitats. While G. huxleyi has been considered a single cosmopolitan species, our analyses demonstrate that it has evolved to comprise at least three distinct species, which led us to formally revise the taxonomy of the G. huxleyi complex. Moreover, the first speciation event occurred before the onset of the last interglacial period (~140 ka), while the second followed during this interglacial. Then, further rapid diversifications occurred during the most recent ice-sheet expansion of the last glacial period and established morphotypes as dominant populations across environmental clines. These results suggest that glacial-cycle dynamics contributed to the isolation of ocean basins and the segregations of oceans fronts as extrinsic drivers of micro-evolutionary radiations in extant marine phytoplankton.
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Affiliation(s)
- El Mahdi Bendif
- Department of Earth Sciences, University of Oxford, Oxford, UK.
- Department of Plant Sciences, University of Oxford, Oxford, UK.
- Institut des sciences de la mer de Rimouski (ISMER), Université du Québec à Rimouski, Rimouski, Canada.
| | - Ian Probert
- Sorbonne Université - CNRS, Roscoff Culture Collection, FR2424 Station Biologique de Roscoff, Roscoff, France
| | - Odysseas A Archontikis
- Department of Earth Sciences, University of Oxford, Oxford, UK
- Department of Earth Sciences, The Natural History Museum, London, UK
| | - Jeremy R Young
- Department of Earth Sciences, University College London, London, UK
| | - Luc Beaufort
- Aix Marseille Université, CNRS, IRD, INRAE, CEREGE, Aix-en-Provence, France
| | | | - Dmitry Filatov
- Department of Plant Sciences, University of Oxford, Oxford, UK
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3
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Caroca-Valencia S, Rivas J, Araya M, Núñez A, Piña F, Toro-Mellado F, Contreras-Porcia L. Indoor and Outdoor Cultures of Gracilaria chilensis: Determination of Biomass Growth and Molecular Markers for Biomass Quality Evaluation. PLANTS (BASEL, SWITZERLAND) 2023; 12:1340. [PMID: 36987029 PMCID: PMC10057914 DOI: 10.3390/plants12061340] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/25/2023] [Revised: 03/08/2023] [Accepted: 03/13/2023] [Indexed: 06/19/2023]
Abstract
Taking into consideration climate change scenarios, marine contamination, and a constantly expanding world population, seaweed aquaculture has become an important option for the large-scale production of high-quality biomass. Due to existing biological knowledge of Gracilaria chilensis, several cultivation strategies have been established for obtaining diverse biomolecules (lipids, fatty acids, pigments, among others) with nutraceutical properties. In this research, indoor and outdoor cultivation methodologies were applied to generate high biomass of G. chilensis with positive quality for productive purposes, where the quality was determined according to the concentrations of lipoperoxides and phenolic compounds and the total antioxidant capacity (TAC). The results showed that G. chilensis cultures, which were fertilized for three weeks with Basfoliar® Aktiv (BF) at concentrations of 0.05-1% v/v, obtained high biomass (1-1.3 kg m-2) and DGR (0.35-4.66% d-1), low lipoperoxides (0.5-2.8 µmol g-1 DT), and high phenolic compounds (0.4-0.92 µ eq. GA g-1 FT) and TAC (5-7.5 nmol eq. TROLOX g-1 FT) as compared with other culture media. Lower stress was determined under indoor cultures, due to the operative control of diverse physicochemical stressor parameters (T°, light intensity, photoperiod, among others). Therefore, the cultures developed allow scaling the biomass in productive terms and are suitable for obtaining compounds of interest.
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Affiliation(s)
- Sofía Caroca-Valencia
- Departamento de Ecología y Biodiversidad, Facultad de Ciencias de la Vida, Universidad Andres Bello, República 440, Santiago 8370251, Chile
- Centro de Investigación Marina Quintay (CIMARQ), Facultad de Ciencias de la Vida, Universidad Andres Bello, Valparaíso 2531015, Chile
- Center of Applied Ecology and Sustainability (CAPES), Santiago 8331150, Chile
- Instituto Milenio en Socio-Ecología Costera (SECOS), Santiago 8370251, Chile
| | - Jorge Rivas
- Departamento de Ecología y Biodiversidad, Facultad de Ciencias de la Vida, Universidad Andres Bello, República 440, Santiago 8370251, Chile
- Centro de Investigación Marina Quintay (CIMARQ), Facultad de Ciencias de la Vida, Universidad Andres Bello, Valparaíso 2531015, Chile
- Center of Applied Ecology and Sustainability (CAPES), Santiago 8331150, Chile
- Instituto Milenio en Socio-Ecología Costera (SECOS), Santiago 8370251, Chile
| | - Matías Araya
- Departamento de Ecología y Biodiversidad, Facultad de Ciencias de la Vida, Universidad Andres Bello, República 440, Santiago 8370251, Chile
- Centro de Investigación Marina Quintay (CIMARQ), Facultad de Ciencias de la Vida, Universidad Andres Bello, Valparaíso 2531015, Chile
- Center of Applied Ecology and Sustainability (CAPES), Santiago 8331150, Chile
- Instituto Milenio en Socio-Ecología Costera (SECOS), Santiago 8370251, Chile
| | - Alejandra Núñez
- Departamento de Ecología y Biodiversidad, Facultad de Ciencias de la Vida, Universidad Andres Bello, República 440, Santiago 8370251, Chile
- Centro de Investigación Marina Quintay (CIMARQ), Facultad de Ciencias de la Vida, Universidad Andres Bello, Valparaíso 2531015, Chile
- Center of Applied Ecology and Sustainability (CAPES), Santiago 8331150, Chile
- Instituto Milenio en Socio-Ecología Costera (SECOS), Santiago 8370251, Chile
| | - Florentina Piña
- Departamento de Ecología y Biodiversidad, Facultad de Ciencias de la Vida, Universidad Andres Bello, República 440, Santiago 8370251, Chile
- Centro de Investigación Marina Quintay (CIMARQ), Facultad de Ciencias de la Vida, Universidad Andres Bello, Valparaíso 2531015, Chile
- Center of Applied Ecology and Sustainability (CAPES), Santiago 8331150, Chile
- Instituto Milenio en Socio-Ecología Costera (SECOS), Santiago 8370251, Chile
- Programa de Doctorado en Biotecnología, Facultad de Ciencias de la Vida, Universidad Andres Bello, Santiago 8370251, Chile
| | - Fernanda Toro-Mellado
- Departamento de Ecología y Biodiversidad, Facultad de Ciencias de la Vida, Universidad Andres Bello, República 440, Santiago 8370251, Chile
- Centro de Investigación Marina Quintay (CIMARQ), Facultad de Ciencias de la Vida, Universidad Andres Bello, Valparaíso 2531015, Chile
- Center of Applied Ecology and Sustainability (CAPES), Santiago 8331150, Chile
- Instituto Milenio en Socio-Ecología Costera (SECOS), Santiago 8370251, Chile
- Programa de Doctorado en Biotecnología, Facultad de Ciencias de la Vida, Universidad Andres Bello, Santiago 8370251, Chile
| | - Loretto Contreras-Porcia
- Departamento de Ecología y Biodiversidad, Facultad de Ciencias de la Vida, Universidad Andres Bello, República 440, Santiago 8370251, Chile
- Centro de Investigación Marina Quintay (CIMARQ), Facultad de Ciencias de la Vida, Universidad Andres Bello, Valparaíso 2531015, Chile
- Center of Applied Ecology and Sustainability (CAPES), Santiago 8331150, Chile
- Instituto Milenio en Socio-Ecología Costera (SECOS), Santiago 8370251, Chile
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4
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Feng X, Chen H, Xiao B, Wu Q, Zhang J, Zhang N, Li P, Wang L, Yin J, Sui Z. Ploidy Identification by Flow Cytometry and Application of the Method to Characterize Seasonal Ploidy Variation of Wild Populations of the Red Alga Gracilariopsis lemaneiformis. MARINE BIOTECHNOLOGY (NEW YORK, N.Y.) 2022; 24:1073-1083. [PMID: 36198873 DOI: 10.1007/s10126-022-10167-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2022] [Accepted: 09/16/2022] [Indexed: 06/16/2023]
Abstract
Gracilariopsis lemaneiformis (Gp. lemaneiformis) is an economically important alga. At present, there is no way to quickly and easily determine its ploidy and life cycle dynamics in wild populations, which affects the process of genetic breeding. In this study, we developed and verified a ploidy identification method using flow cytometry and then used it to explore the seasonal fluctuation of the ploidy ratio and the environmental factors that influence it in wild populations of this species. Of the three methods we tested for nucleus extraction, quick chopping was the best because of its high extraction efficiency, low debris background, obvious subcellular scatter plot, and clear typical histogram. Samples from the tip of the alga were more suitable for preparing the nuclear suspension than samples from the base. Generalized linear model analysis based on diagnosis of multicollinearity revealed a negative correlation between temperature and ploidy ratio. Among the environmental factors tested, temperature had the greatest influence on the ploidy ratio, whereas precipitation and sunshine duration had no effect on the ploidy ratio fluctuation. Our study will be useful for material collection and studies of utilization and life cycle dynamics. Moreover, understanding of ploidy dynamics may provide a theoretical basis for improving variety and breeding of Gp. lemaneiformis in the future.
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Affiliation(s)
- Xiaoqing Feng
- Key Laboratory of Marine Genetics and Breeding (Ocean University of China), Ministry of Education, Qingdao, 266003, China
| | - Haihong Chen
- Key Laboratory of Marine Genetics and Breeding (Ocean University of China), Ministry of Education, Qingdao, 266003, China
| | - Baoheng Xiao
- Key Laboratory of Marine Genetics and Breeding (Ocean University of China), Ministry of Education, Qingdao, 266003, China
| | - Qiong Wu
- Key Laboratory of Marine Genetics and Breeding (Ocean University of China), Ministry of Education, Qingdao, 266003, China
| | - Jingyu Zhang
- Key Laboratory of Marine Genetics and Breeding (Ocean University of China), Ministry of Education, Qingdao, 266003, China
| | - Ni Zhang
- Key Laboratory of Marine Genetics and Breeding (Ocean University of China), Ministry of Education, Qingdao, 266003, China
| | - Pingping Li
- Key Laboratory of Marine Genetics and Breeding (Ocean University of China), Ministry of Education, Qingdao, 266003, China
| | - Lu Wang
- Key Laboratory of Marine Genetics and Breeding (Ocean University of China), Ministry of Education, Qingdao, 266003, China
| | - Jingru Yin
- Key Laboratory of Marine Genetics and Breeding (Ocean University of China), Ministry of Education, Qingdao, 266003, China
| | - Zhenghong Sui
- Key Laboratory of Marine Genetics and Breeding (Ocean University of China), Ministry of Education, Qingdao, 266003, China.
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5
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Huanel OR, Quesada-Calderón S, Ríos Molina C, Morales-González S, Saenz-Agudelo P, Nelson WA, Arakaki N, Mauger S, Faugeron S, Guillemin ML. Pre-domestication bottlenecks of the cultivated seaweed Gracilaria chilensis. Mol Ecol 2022; 31:5506-5523. [PMID: 36029170 DOI: 10.1111/mec.16672] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2022] [Revised: 08/02/2022] [Accepted: 08/09/2022] [Indexed: 12/24/2022]
Abstract
Gracilaria chilensis is the main cultivated seaweed in Chile. The low genetic diversity observed in the Chilean populations has been associated with the over-exploitation of natural beds and/or the founder effect that occurred during post-glacial colonization from New Zealand. How these processes have affected its evolutionary trajectory before farming and incipient domestication is poorly understood. In this study, we used 2232 single nucleotide polymorphisms (SNPs) to assess how the species' evolutionary history in New Zealand (its region of origin), the founder effect linked to transoceanic dispersion and colonization of South America, and the recent over-exploitation of natural populations have influenced the genetic architecture of G. chilensis in Chile. The contrasting patterns of genetic diversity and structure observed between the two main islands in New Zealand attest to the important effects of Quaternary glacial cycles on G. chilensis. Approximate Bayesian Computation (ABC) analyses indicated that Chatham Island and South America were colonized independently near the end of the Last Glacial Maximum and emphasized the importance of coastal and oceanic currents during that period. Furthermore, ABC analyses inferred the existence of a recent and strong genetic bottleneck in Chile, matching the period of over-exploitation of the natural beds during the 1970s, followed by rapid demographic expansion linked to active clonal propagation used in farming. Recurrent genetic bottlenecks strongly eroded the genetic diversity of G. chilensis prior to its cultivation, raising important challenges for the management of genetic resources in this incipiently domesticated species.
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Affiliation(s)
- Oscar R Huanel
- Núcleo Milenio MASH, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago, Chile.,IRL 3614 Evolutionary Biology and Ecology of Algae, CNRS, Sorbonne Université, Pontificia Universidad Católica de Chile, Universidad Austral de Chile, Roscoff, France
| | - Suany Quesada-Calderón
- Instituto de Ciencias Ambientales y Evolutivas, Facultad de Ciencias, Universidad Austral de Chile, Valdivia, Chile.,AUSTRAL-omics, Vicerrectoría de Investigación, Desarrollo y Creación Artística, Universidad Austral de Chile, Valdivia, Chile
| | - Cristian Ríos Molina
- Instituto de Ciencias Ambientales y Evolutivas, Facultad de Ciencias, Universidad Austral de Chile, Valdivia, Chile
| | - Sarai Morales-González
- Instituto de Ciencias Ambientales y Evolutivas, Facultad de Ciencias, Universidad Austral de Chile, Valdivia, Chile
| | - Pablo Saenz-Agudelo
- IRL 3614 Evolutionary Biology and Ecology of Algae, CNRS, Sorbonne Université, Pontificia Universidad Católica de Chile, Universidad Austral de Chile, Roscoff, France.,Instituto de Ciencias Ambientales y Evolutivas, Facultad de Ciencias, Universidad Austral de Chile, Valdivia, Chile.,ANID- Millennium Science Initiative Nucleus (NUTME), Las Cruces, Chile
| | - Wendy A Nelson
- National Institute of Water and Atmospheric Research, Wellington, New Zealand.,School of Biological Sciences, University of Auckland, Auckland, New Zealand
| | - Natalia Arakaki
- Instituto del Mar del Perú, Banco de Germoplasma de Organismos Acuáticos, Chucuito, Callao, Peru
| | - Stéphane Mauger
- IRL 3614 Evolutionary Biology and Ecology of Algae, CNRS, Sorbonne Université, Pontificia Universidad Católica de Chile, Universidad Austral de Chile, Roscoff, France
| | - Sylvain Faugeron
- Núcleo Milenio MASH, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago, Chile.,IRL 3614 Evolutionary Biology and Ecology of Algae, CNRS, Sorbonne Université, Pontificia Universidad Católica de Chile, Universidad Austral de Chile, Roscoff, France
| | - Marie-Laure Guillemin
- IRL 3614 Evolutionary Biology and Ecology of Algae, CNRS, Sorbonne Université, Pontificia Universidad Católica de Chile, Universidad Austral de Chile, Roscoff, France.,Núcleo Milenio MASH, Instituto de Ciencias Ambientales y Evolutivas, Facultad de Ciencias, Universidad Austral de Chile, Valdivia, Chile
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6
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Individuals from non-native populations are stronger and bigger than individuals from native populations of a widespread seaweed. Biol Invasions 2022. [DOI: 10.1007/s10530-022-02766-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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7
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Vieira VMNCS, Engelen AH, Huanel OR, Guillemin ML. An Individual-Based Model of the Red Alga Agarophyton chilense Unravels the Complex Demography of Its Intertidal Stands. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.797350] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Algal demographic models have been developed mainly to study their life cycle evolution or optimize their commercial exploitation. Most commonly, structured-aggregated population models simulate the main life cycle stages considering their fertility, growth and survival. Their coarse resolution results in weak predictive abilities since neglected details may still impact the whole. In our case, we need a model of Agarophyton chilense natural intertidal populations that unravels the complex demography of isomorphic biphasic life cycles and be further used for: (i) introduction of genetics, aimed at studying the evolutionary stability of life cycles, (ii) optimizing commercial exploitation, and (iii) adaptation for other species. Long-term monitoring yield 6,066 individual observations and 40 population observations. For a holistic perspective, we developed an Individual-Based Model (IBM) considering ploidy stage, sex stage, holdfast age and survival, frond size, growth and breakage, fecundity, spore survival, stand biomass, location and season. The IBM was calibrated and validated comparing observed and estimated sizes and abundances of gametophyte males, gametophyte females and tetrasporophytes, stand biomass, haploid:dipoid ratio (known as H:D or G:T), fecundity and recruitment. The IBM replicated well the respective individual and population properties, and processes such as winter competition for light, self-thinning, summer stress from desiccation, frond breakage and re-growth, and different niche occupation by haploids and diploids. Its success depended on simulating with precision details such as the holdfasts’ dynamics. Because “details” often occur for a reduced number of individuals, inferring about them required going beyond statistically significant evidences and integrating these with parameter calibration aimed at maximized model fit. On average, the population was haploid-dominated (H:D > 1). In locations stressed by desiccation, the population was slightly biased toward the diploids and younger individuals due to the superior germination and survival of the diploid sporelings. In permanently submerged rock pools the population was biased toward the haploids and older individuals due to the superior growth and survival of the haploid adults. The IBM application demonstrated that conditional differentiation among ploidy stages was responsible for their differential niche occupation, which, in its turn, has been argued as the driver of the evolutionary stability of isomorphic biphasic life cycles.
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Kamiya M, Inoue N, Suzuki C, Abe SI. Ecological, physiological, and biomechanical differences between gametophytes and sporophytes of Chondrus ocellatus (Gigartinales, Rhodophyta) 1. JOURNAL OF PHYCOLOGY 2021; 57:1590-1603. [PMID: 34164823 DOI: 10.1111/jpy.13193] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2020] [Accepted: 06/07/2021] [Indexed: 06/13/2023]
Abstract
Although variation among habitats in the ratio of gametophytes to sporophytes has been reported in various gigartinacean species, factors controlling the phase ratio remain poorly understood. Over 18 months, we examined the phase ratio of Chondrus ocellatus at three sites: a sheltered intertidal site, Hiruga A; an exposed intertidal site, Hiruga B; and a subtidal site, Shikimi. The mean proportion of gametophytes at Hiruga A (73.1%) was significantly higher than that at Shikimi (51.2%) and Hiruga B (44.7%). Due to a significantly higher water retention ability of the gametophytes, it was expected that the gametophytes would exhibit higher desiccation tolerance. After dehydration treatments, however, neither the photosynthetic rate of vegetative blades nor the survival rate of spores was significantly different between the phases. Measurements of blade strength indicated that the sporophytic blades were less stiff and more flexible, and a culture experiment revealed that the sporophytic germlings showed a significantly higher growth rate. Flexible blades and fast-growing germlings are considered advantageous for colonizing wave-swept intertidal habitats, so these properties may have caused the different fluctuation pattern of phase ratio among the sites. The present data demonstrate that biomechanical and physiological differences between the two phases of C. ocellatus make one phase advantageous in certain environmental conditions, and that these differences likely cause an unequal ratio of isomorphic phases.
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Affiliation(s)
- Mitsunobu Kamiya
- Faculty of Marine Bioscience, Fukui Prefectural University, Obama, Fukui, 917-0003, Japan
| | - Naoto Inoue
- Faculty of Marine Bioscience, Fukui Prefectural University, Obama, Fukui, 917-0003, Japan
| | - Chika Suzuki
- Faculty of Marine Bioscience, Fukui Prefectural University, Obama, Fukui, 917-0003, Japan
| | - Shin-Ichiro Abe
- College of Education, Ibaraki University, 2-1-1, Bunkyo, Mito, Ibaraki, 310-8512, Japan
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9
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Pinto C, Ibáñez MR, Loyola G, León L, Salvatore Y, González C, Barraza V, Castañeda F, Aldunate R, Contreras-Porcia L, Fuenzalida K, Bronfman FC. Characterization of an Agarophyton chilense Oleoresin Containing PPARγ Natural Ligands with Insulin-Sensitizing Effects in a C57Bl/6J Mouse Model of Diet-Induced Obesity and Antioxidant Activity in Caenorhabditis elegans. Nutrients 2021; 13:1828. [PMID: 34071972 PMCID: PMC8227508 DOI: 10.3390/nu13061828] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2021] [Revised: 05/19/2021] [Accepted: 05/20/2021] [Indexed: 12/27/2022] Open
Abstract
The biomedical potential of the edible red seaweed Agarophyton chilense (formerly Gracilaria chilensis) has not been explored. Red seaweeds are enriched in polyunsaturated fatty acids and eicosanoids, which are known natural ligands of the PPARγ nuclear receptor. PPARγ is the molecular target of thiazolidinediones (TZDs), drugs used as insulin sensitizers to treat type 2 diabetes mellitus. Medical use of TZDs is limited due to undesired side effects, a problem that has triggered the search for selective PPARγ modulators (SPPARMs) without the TZD side effects. We produced Agarophyton chilense oleoresin (Gracilex®), which induces PPARγ activation without inducing adipocyte differentiation, similar to SPPARMs. In a diet-induced obesity model of male mice, we showed that treatment with Gracilex® improves insulin sensitivity by normalizing altered glucose and insulin parameters. Gracilex® is enriched in palmitic acid, arachidonic acid, oleic acid, and lipophilic antioxidants such as tocopherols and β-carotene. Accordingly, Gracilex® possesses antioxidant activity in vitro and increased antioxidant capacity in vivo in Caenorhabditis elegans. These findings support the idea that Gracilex® represents a good source of natural PPARγ ligands and antioxidants with the potential to mitigate metabolic disorders. Thus, its nutraceutical value in humans warrants further investigation.
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Affiliation(s)
- Claudio Pinto
- Postgraduate Department, Faculty of Veterinary Sciences, Universidad Austral de Chile, Valdivia 5110566, Chile;
- Center for Aging and Regeneration (CARE), Department of Cellular and Molecular Biology, Faculty of Biological Sciences, Pontificia Universidad Católica de Chile, Santiago 8320000, Chile
| | - María Raquel Ibáñez
- Department of Physiology, Faculty of Biological Sciences, Pontificia Universidad Católica de Chile, Santiago 8320000, Chile; (M.R.I.); (G.L.); (L.L.); (Y.S.); (C.G.); (V.B.)
- Institute of Biomedical Sciences (ICB), Faculty of Medicine, Universidad Andres Bello, Santiago 8320000, Chile
| | - Gloria Loyola
- Department of Physiology, Faculty of Biological Sciences, Pontificia Universidad Católica de Chile, Santiago 8320000, Chile; (M.R.I.); (G.L.); (L.L.); (Y.S.); (C.G.); (V.B.)
- Institute of Biomedical Sciences (ICB), Faculty of Medicine, Universidad Andres Bello, Santiago 8320000, Chile
| | - Luisa León
- Department of Physiology, Faculty of Biological Sciences, Pontificia Universidad Católica de Chile, Santiago 8320000, Chile; (M.R.I.); (G.L.); (L.L.); (Y.S.); (C.G.); (V.B.)
| | - Yasmin Salvatore
- Department of Physiology, Faculty of Biological Sciences, Pontificia Universidad Católica de Chile, Santiago 8320000, Chile; (M.R.I.); (G.L.); (L.L.); (Y.S.); (C.G.); (V.B.)
| | - Carla González
- Department of Physiology, Faculty of Biological Sciences, Pontificia Universidad Católica de Chile, Santiago 8320000, Chile; (M.R.I.); (G.L.); (L.L.); (Y.S.); (C.G.); (V.B.)
| | - Víctor Barraza
- Department of Physiology, Faculty of Biological Sciences, Pontificia Universidad Católica de Chile, Santiago 8320000, Chile; (M.R.I.); (G.L.); (L.L.); (Y.S.); (C.G.); (V.B.)
| | - Francisco Castañeda
- Department of Ecology and Biodiversity, Faculty of Life Sciences, Universidad Andres Bello, Santiago 8320000, Chile; (F.C.); (L.C.-P.)
- Quintay Marine Research Center (CIMARQ), Faculty of Life Sciences, Universidad Andres Bello, Valparaiso, Quintay 2480000, Chile
- Center of Applied Ecology and Sustainability (CAPES), Santiago 8331150, Chile
- Instituto Milenio en Socio-Ecología Costera (SECOS), Santiago 8370251, Chile
| | - Rebeca Aldunate
- Faculty of Sciences, School of Biotechnology, Universidad Santo Tomas, Santiago 8320000, Chile;
| | - Loretto Contreras-Porcia
- Department of Ecology and Biodiversity, Faculty of Life Sciences, Universidad Andres Bello, Santiago 8320000, Chile; (F.C.); (L.C.-P.)
- Quintay Marine Research Center (CIMARQ), Faculty of Life Sciences, Universidad Andres Bello, Valparaiso, Quintay 2480000, Chile
- Center of Applied Ecology and Sustainability (CAPES), Santiago 8331150, Chile
- Instituto Milenio en Socio-Ecología Costera (SECOS), Santiago 8370251, Chile
| | - Karen Fuenzalida
- Department of Physiology, Faculty of Biological Sciences, Pontificia Universidad Católica de Chile, Santiago 8320000, Chile; (M.R.I.); (G.L.); (L.L.); (Y.S.); (C.G.); (V.B.)
- Institute of Biomedical Sciences (ICB), Faculty of Medicine, Universidad Andres Bello, Santiago 8320000, Chile
| | - Francisca C. Bronfman
- Department of Physiology, Faculty of Biological Sciences, Pontificia Universidad Católica de Chile, Santiago 8320000, Chile; (M.R.I.); (G.L.); (L.L.); (Y.S.); (C.G.); (V.B.)
- Institute of Biomedical Sciences (ICB), Faculty of Medicine, Universidad Andres Bello, Santiago 8320000, Chile
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10
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Flanagan BA, Krueger-Hadfield SA, Murren CJ, Nice CC, Strand AE, Sotka EE. Founder effects shape linkage disequilibrium and genomic diversity of a partially clonal invader. Mol Ecol 2021; 30:1962-1978. [PMID: 33604965 DOI: 10.1111/mec.15854] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2020] [Revised: 01/18/2021] [Accepted: 02/01/2021] [Indexed: 12/20/2022]
Abstract
The genomic variation of an invasive species may be affected by complex demographic histories and evolutionary changes during the invasion. Here, we describe the relative influence of bottlenecks, clonality, and population expansion in determining genomic variability of the widespread red macroalga Agarophyton vermiculophyllum. Its introduction from mainland Japan to the estuaries of North America and Europe coincided with shifts from predominantly sexual to partially clonal reproduction and rapid adaptive evolution. A survey of 62,285 SNPs for 351 individuals from 35 populations, aligned to 24 chromosome-length scaffolds indicate that linkage disequilibrium (LD), observed heterozygosity (Ho ), Tajima's D, and nucleotide diversity (Pi) were greater among non-native than native populations. Evolutionary simulations indicate LD and Tajima's D were consistent with a severe population bottleneck. Also, the increased rate of clonal reproduction in the non-native range could not have produced the observed patterns by itself but may have magnified the bottleneck effect on LD. Elevated marker diversity in the genetic source populations could have contributed to the increased Ho and Pi observed in the non-native range. We refined the previous invasion source region to a ~50 km section of northeastern Honshu Island. Outlier detection methods failed to reveal any consistently differentiated loci shared among invaded regions, probably because of the complex A. vermiculophyllum demographic history. Our results reinforce the importance of demographic history, specifically founder effects, in driving genomic variation of invasive populations, even when localized adaptive evolution and reproductive system shifts are observed.
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Affiliation(s)
- Ben A Flanagan
- Department of Biology, College of Charleston, Charleston, SC, USA.,Department of Biological Sciences, University of Southern California, Los Angeles, CA, USA
| | - Stacy A Krueger-Hadfield
- Department of Biology, College of Charleston, Charleston, SC, USA.,Department of Biology, University of Alabama at Birmingham, Birmingham, AL, USA
| | | | - Chris C Nice
- Department of Biology, Population and Conservation Biology Program, Texas State University, San Marcos, TX, USA
| | - Allan E Strand
- Department of Biology, College of Charleston, Charleston, SC, USA
| | - Erik E Sotka
- Department of Biology, College of Charleston, Charleston, SC, USA
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11
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Vieira VM, Engelen AH, Huanel OR, Guillemin M. Differential Frond Growth in the Isomorphic Haploid-diploid Red Seaweed Agarophyton chilense by Long-term In Situ Monitoring. JOURNAL OF PHYCOLOGY 2021; 57:592-605. [PMID: 33249614 PMCID: PMC8247958 DOI: 10.1111/jpy.13110] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/19/2020] [Revised: 10/18/2020] [Accepted: 10/29/2020] [Indexed: 06/12/2023]
Abstract
Conditional differentiation between haploids and diploids has been proposed to drive the evolutionary stability of isomorphic biphasic life cycles. The cost of producing and maintaining genetic information has been posed as a possible driver of this conditional differentiation. Under this hypothesis, haploids benefit over diploids in resource-limited environments by halving the costs of producing and maintaining DNA. Spared resources can be allocated to enhance survival, growth or fertility. Here we test in the field whether indeed haploids have higher growth rates than diploids. Individuals of the red seaweed Agarophyton chilense, were mapped and followed during 2 years with 4-month census intervals across different stands within the Valdivia River estuary, Chile. As hypothesized, haploids grew larger and faster than diploids, but this was sex-dependent. Haploid (gametophyte) females grew twice as large and 15% faster than diploids (tetrasporophytes), whereas haploid males only grew as large and as fast as the maximum obtained by diploids in summer. However, haploid males maintained their maximum sizes and growth rates constant year-round, while diploids were smaller and had lower growth rates during the winter. In conclusion, our results confirm the conditional differentiation in size and growth between haploids and diploids but also identified important differences between males and females. Besides understanding life cycle evolution, the dynamics of A. chilense frond growth reported informs algal farmers regarding production optimization and should help in determining best planting and harvesting strategies.
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Affiliation(s)
- Vasco M.N.C.S. Vieira
- MARETECInstituto Superior TécnicoUniversidade Técnica de LisboaAv. Rovisco Pais1049‐001LisboaPortugal
| | - Aschwin H. Engelen
- CCMARCenter of Marine ScienceUniversity of AlgarveCampus Gambelas8005‐139FaroPortugal
| | - Oscar R. Huanel
- Departamento de EcologíaFacultad de Ciencias BiológicasPontificia Universidad Católica de ChileSantiagoChile
- CNRSUMI 3614Evolutionary Biology and Ecology of AlgaeSorbonne UniversitésUPMC University Paris VIStation Biologique de RoscoffCS 90074Place G. Tessier296888RoscoffFrance
| | - Marie‐Laure Guillemin
- CNRSUMI 3614Evolutionary Biology and Ecology of AlgaeSorbonne UniversitésUPMC University Paris VIStation Biologique de RoscoffCS 90074Place G. Tessier296888RoscoffFrance
- Instituto de Ciencias Ambientales y EvolutivasFacultad de CienciasUniversidad Austral de ChileCasilla 567ValdiviaChile
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12
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Reynes L, Thibaut T, Mauger S, Blanfuné A, Holon F, Cruaud C, Couloux A, Valero M, Aurelle D. Genomic signatures of clonality in the deep water kelp Laminaria rodriguezii. Mol Ecol 2021; 30:1806-1822. [PMID: 33629449 DOI: 10.1111/mec.15860] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2020] [Revised: 02/18/2021] [Accepted: 02/19/2021] [Indexed: 12/17/2022]
Abstract
The development of population genomic approaches in non-model species allows for renewed studies of the impact of reproductive systems and genetic drift on population diversity. Here, we investigate the genomic signatures of partial clonality in the deep water kelp Laminaria rodriguezii, known to reproduce by both sexual and asexual means. We compared these results with the species Laminaria digitata, a closely related species that differs by different traits, in particular its reproductive mode (no clonal reproduction). We analysed genome-wide variation with dd-RAD sequencing using 4,077 SNPs in L. rodriguezii and 7,364 SNPs in L. digitata. As predicted for partially clonal populations, we show that the distribution of FIS within populations of L. rodriguezii is shifted toward negative values, with a high number of loci showing heterozygote excess. This finding is the opposite of what we observed within sexual populations of L. digitata, characterized by a generalized deficit in heterozygotes. Furthermore, we observed distinct distributions of FIS among populations of L. rodriguezii, which is congruent with the predictions of theoretical models for different levels of clonality and genetic drift. These findings highlight that the empirical distribution of FIS is a promising feature for the genomic study of asexuality in natural populations. Our results also show that the populations of L. rodriguezii analysed here are genetically differentiated and probably isolated. Our study provides a conceptual framework to investigate partial clonality on the basis of RAD-sequencing SNPs. These results could be obtained without any reference genome, and are therefore of interest for various non-model species.
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Affiliation(s)
- Lauric Reynes
- CNRS, IRD, MIO, Aix Marseille Université, Université de Toulon, Marseille, France
| | - Thierry Thibaut
- CNRS, IRD, MIO, Aix Marseille Université, Université de Toulon, Marseille, France
| | - Stéphane Mauger
- IRL 3614, Evolutionary Biology and Ecology of Algae, CNRS, UC, UACH, Sorbonne Université, Roscoff, France
| | - Aurélie Blanfuné
- CNRS, IRD, MIO, Aix Marseille Université, Université de Toulon, Marseille, France
| | | | - Corinne Cruaud
- Genoscope, Institut de Biologie François-Jacob, Commissariat à l'Energie Atomique (CEA), Université Paris-Saclay, Evry, France
| | - Arnaud Couloux
- Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, Evry, France
| | - Myriam Valero
- IRL 3614, Evolutionary Biology and Ecology of Algae, CNRS, UC, UACH, Sorbonne Université, Roscoff, France
| | - Didier Aurelle
- CNRS, IRD, MIO, Aix Marseille Université, Université de Toulon, Marseille, France
- Institut de Systématique Évolution Biodiversité (ISYEB, UMR 7205), Muséum National d'Histoire Naturelle, CNRS, EPHE, Sorbonne Université, Paris, France
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13
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Stoeckel S, Arnaud-Haond S, Krueger-Hadfield SA. The Combined Effect of Haplodiplonty and Partial Clonality on Genotypic and Genetic Diversity in a Finite Mutating Population. J Hered 2021; 112:78-91. [PMID: 33710350 DOI: 10.1093/jhered/esaa062] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2020] [Accepted: 12/17/2020] [Indexed: 02/03/2023] Open
Abstract
Partial clonality is known to affect the genetic composition and evolutionary trajectory of diplontic (single, free-living diploid stage) populations. However, many partially clonal eukaryotes exhibit life cycles in which somatic development occurs in both haploid and diploid individuals (haplodiplontic life cycles). Here, we studied how haplodiplontic life cycles and partial clonality structurally constrain, as immutable parameters, the reshuffling of genetic diversity and its dynamics in populations over generations. We assessed the distribution of common population genetic indices at different proportions of haploids, rates of clonality, mutation rates, and sampling efforts. Our results showed that haplodiplontic life cycles alone in finite populations affect effective population sizes and the ranges of distributions of population genetic indices. With nonoverlapping generations, haplodiplonty allowed the evolution of 2 temporal genetic pools that may diverge in sympatry due to genetic drift under full sexuality and clonality. Partial clonality in these life cycles acted as a homogenizing force between those 2 pools. Moreover, the combined effects of proportion of haploids, rate of clonality, and the relative strength of mutation versus genetic drift impacts the distributions of population genetics indices, rendering it difficult to transpose and use knowledge accumulated from diplontic or haplontic species. Finally, we conclude by providing recommendations for sampling and analyzing the population genetics of partially clonal haplodiplontic taxa.
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Affiliation(s)
- Solenn Stoeckel
- INRAE, Agrocampus Ouest, Université de Rennes, IGEPP, F-35650 Le Rheu, France
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14
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Krueger-Hadfield SA, Guillemin ML, Destombe C, Valero M, Stoeckel S. Exploring the Genetic Consequences of Clonality in Haplodiplontic Taxa. J Hered 2021; 112:92-107. [PMID: 33511982 DOI: 10.1093/jhered/esaa063] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2020] [Accepted: 12/18/2020] [Indexed: 11/15/2022] Open
Abstract
Partially clonality is an incredibly common reproductive mode found across all the major eukaryotic lineages. Yet, population genetic theory is based on exclusive sexuality or exclusive asexuality, and partial clonality is often ignored. This is particularly true in haplodiplontic eukaryotes, including algae, ferns, mosses, and fungi, where somatic development occurs in both the haploid and diploid stages. Haplodiplontic life cycles are predicted to be correlated with asexuality, but tests of this prediction are rare. Moreover, there are unique consequences of having long-lived haploid and diploid stages in the same life cycle. For example, clonal processes uncouple the life cycle such that the repetition of the diploid stage via clonality leads to the loss of the haploid stage. Here, we surveyed the literature to find studies that had genotyped both haploid and diploid stages and recalculated population genetic summary metrics for seven red algae, one green alga, three brown algae, and three mosses. We compared these data to recent simulations that explicitly addressed the population genetic consequences of partial clonality in haplodiplontic life cycles. Not only was partial clonality found to act as a homogenizing force, but the combined effects of proportion of haploids, rate of clonality, and the relative strength of mutation versus genetic drift impacts the distributions of population genetic indices. We found remarkably similar patterns across commonly used population genetic metrics between our empirical and recent theoretical expectations. To facilitate future studies, we provide some recommendations for sampling and analyzing population genetic parameters for haplodiplontic taxa.
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Affiliation(s)
| | - Marie-Laure Guillemin
- Evolutionary Biology and Ecology of Algae, CNRS, Sorbonne Universités, Pontificia Universidad Católica de Chile, Universidad Austral de Chile, IRL 3614, Station Biologique de Roscoff, Roscoff, France
- Instituto de Ciencias Ambientales y Evolutivas, Facultad de Ciencias, Universidad Austral de Chile, Casilla, Valdivia, Chile
| | - Christophe Destombe
- Evolutionary Biology and Ecology of Algae, CNRS, Sorbonne Universités, Pontificia Universidad Católica de Chile, Universidad Austral de Chile, IRL 3614, Station Biologique de Roscoff, Roscoff, France
| | - Myriam Valero
- Evolutionary Biology and Ecology of Algae, CNRS, Sorbonne Universités, Pontificia Universidad Católica de Chile, Universidad Austral de Chile, IRL 3614, Station Biologique de Roscoff, Roscoff, France
| | - Solenn Stoeckel
- INRAE, Agrocampus Ouest, Université de Rennes, IGEPP, Le Rheu, France
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15
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Krueger-Hadfield SA, Flanagan BA, Godfroy O, Hill-Spanik KM, Nice CC, Murren CJ, Strand AE, Sotka EE. Using RAD-seq to develop sex-linked markers in a haplodiplontic alga. JOURNAL OF PHYCOLOGY 2021; 57:279-294. [PMID: 33098662 DOI: 10.1111/jpy.13088] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/03/2020] [Accepted: 10/05/2020] [Indexed: 06/11/2023]
Abstract
For many taxa, including isomorphic haplodiplontic macroalgae, determining sex and ploidy is challenging, thereby limiting the scope of some population demographic and genetic studies. Here, we used double-digest restriction site-associated DNA sequencing (ddRAD-seq) to identify sex-linked molecular markers in the widespread red alga Agarophyton vermiculophyllum. In the ddRAD-seq library, we included 10 female gametophytes, 10 male gametophytes, and 16 tetrasporophytes from one native and one non-native site (N = 40 gametophytes and N = 32 tetrasporophytes total). We identified seven putatively female-linked and 19 putatively male-linked sequences. Four female- and eight male-linked markers amplified in all three life cycle stages. Using one female- and one male-linked marker that were sex-specific, we developed a duplex PCR and tested the efficacy of this assay on a subset of thalli sampled at two sites in the non-native range. We confirmed ploidy based on the visual observation of reproductive structures and previous microsatellite genotyping at 10 polymorphic loci. For 32 vegetative thalli, we were able to assign sex and confirm ploidy in these previously genotyped thalli. These markers will be integral to ongoing studies of A. vermiculophyllum invasion. We discuss the utility of RAD-seq over other approaches previously used, such as RAPDs (random amplified polymorphic DNA), for future work designing sex-linked markers in other haplodiplontic macroalgae for which genomes are lacking.
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Affiliation(s)
- Stacy A Krueger-Hadfield
- Department of Biology, University of Alabama at Birmingham, 1300 University Blvd, Birmingham, Alabama, 35294, USA
| | - Ben A Flanagan
- Department of Biological Sciences, University of Southern California, Los Angeles, California, 90089, USA
| | - Olivier Godfroy
- Sorbonne Université, CNRS, Integrative Biology of Marine Models (LBI2M), Station Biologique de Roscoff (SBR), 29680, Roscoff, France
| | - Kristina M Hill-Spanik
- Department of Biology and Grice Marine Lab, College of Charleston, 205 Fort Johnson Road, Charleston, South Carolina, 29412, USA
| | - Chris C Nice
- Department of Biology, Population and Conservation Biology Program, Texas State University, San Marcos, Texas, 78666, USA
| | - Courtney J Murren
- Department of Biology, College of Charleston, 66 George Street, Charleston, South Carolina, 29424, USA
| | - Allan E Strand
- Department of Biology and Grice Marine Lab, College of Charleston, 205 Fort Johnson Road, Charleston, South Carolina, 29412, USA
| | - Erik E Sotka
- Department of Biology and Grice Marine Lab, College of Charleston, 205 Fort Johnson Road, Charleston, South Carolina, 29412, USA
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16
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Ryan WH, Aida J, Krueger-Hadfield SA. The Contribution of Clonality to Population Genetic Structure in the Sea Anemone, Diadumene lineata. J Hered 2021; 112:122-139. [PMID: 33507264 DOI: 10.1093/jhered/esaa050] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2020] [Accepted: 12/22/2020] [Indexed: 01/06/2023] Open
Abstract
Ecological and evolutionary processes differ depending on how genetic diversity is organized in space. For clonal organisms, the organization of both genetic and genotypic diversity can influence the fitness effects of competition, the mating system, and reproductive mode, which are key drivers of life cycle evolution. Understanding how individual reproductive behavior contributes to population genetic structure is essential for disentangling these forces, particularly in species with complex and plastic life cycles. The widespread sea anemone, Diadumene lineata, exhibits temperature-dependent fission, which contributes to predictable variation in clonal rate along the Atlantic coast of the United States, part of its non-native range. Because warmer conditions lead to higher rates of clonality, we expected to find lower genotypic and genetic diversity in lower versus higher latitude populations. We developed primers for 11 microsatellite loci and genotyped 207 anemones collected from 8 sites ranging from Florida to Massachusetts. We found clonal influence at all sites, and as predicted, the largest clones were found at lower latitude sites. We also found genetic signatures of sex in the parts of the range where gametogenesis is most common. Evidence of sex outside the native range is novel for this species and provides insights into the dynamics of this successful invader. Our findings also illustrate challenges that partially clonal taxa pose for eco-evolutionary studies, such as difficulty sampling statistically robust numbers of genets and interpretating common population genetic metrics. For example, we found high among-locus variation in FIS, which makes the meaning of mean multilocus FIS unclear.
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Affiliation(s)
- Will H Ryan
- Department of Biology, University of Alabama at Birmingham, Birmingham, AL.,Department of Biological Science, Florida State University, Tallahassee, FL
| | - Jaclyn Aida
- Department of Biology, University of Alabama at Birmingham, Birmingham, AL
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17
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Eggertsen M, Halling C. Knowledge gaps and management recommendations for future paths of sustainable seaweed farming in the Western Indian Ocean. AMBIO 2021; 50:60-73. [PMID: 31997147 PMCID: PMC7708553 DOI: 10.1007/s13280-020-01319-7] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2019] [Revised: 11/10/2019] [Accepted: 01/08/2020] [Indexed: 05/07/2023]
Abstract
Farming of eucheumatoid seaweeds is a widespread, promising activity and an important livelihood option in many tropical coastal areas as for example in East Africa, Western Indian Ocean (WIO). Compared to other types of aquaculture, seaweed farming has generally low impact on the environment. Nonetheless, there are potential direct or indirect negative effects of seaweed farming, such as introduction of alien species and changes in local environmental conditions. Although farming has been practiced in this region during several decades, the knowledge concerning the actual environmental impacts from faming non-native eucheumatoid haplotypes and consequently how to manage farming activities to mitigate those is highly limited. In this review, we provide a summary of the current scientific knowledge of potential direct and indirect negative environmental effects linked to eucheumatoid seaweed farming such as alterations of benthic macrophyte habitats and loss of native biodiversity. Furthermore, we highlight knowledge gaps that are of importance to address in the near future, e.g., large-scale ecosystem effects and farms as potential vectors of pathogens. We also provide a number of feasible management recommendations to be implemented for a continued development of environmentally sustainable seaweed farming practices in the WIO region, which includes spatial planning of farms to avoid sensitive areas and farming of native haplotypes of eucheumatoids instead of introduced specimens.
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Affiliation(s)
- Maria Eggertsen
- Department of Ecology, Environment and Plant Sciences, Stockholm University, 106 91 Stockholm, Sweden
| | - Christina Halling
- Department of Ecology, Environment and Plant Sciences, Stockholm University, 106 91 Stockholm, Sweden
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18
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Orive ME, Krueger-Hadfield SA. Sex and Asex: A Clonal Lexicon. J Hered 2020; 112:1-8. [PMID: 33336685 DOI: 10.1093/jhered/esaa058] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2020] [Accepted: 12/15/2020] [Indexed: 01/05/2023] Open
Abstract
Organisms across the tree of life have complex life cycles that include both sexual and asexual reproduction or that are obligately asexual. These organisms include ecologically dominant species that structure many terrestrial and marine ecosystems, as well as many pathogens, pests, and invasive species. We must consider both the evolution and maintenance of these various reproductive modes and how these modes shape the genetic diversity, adaptive evolution, and ability to persist in the species that exhibit them. Thus, having a common framework is a key aspect of understanding the biodiversity that shapes our planet. In the 2019 AGA President's Symposium, Sex and Asex: The genetics of complex life cycles, researchers investigating a wide range of taxonomic models and using a variety of modes of investigation coalesced around a common theme-understanding not only how such complex life cycles may evolve, but how they are shaped by the evolutionary and ecological forces around them. In this introduction to the Special Issue from the symposium, we give an overview of some of the key ideas and areas of investigation (a common clonal lexicon, we might say) and introduce the breadth of work submitted by symposium participants.
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Affiliation(s)
- Maria E Orive
- Department of Ecology and Evolutionary Biology, University of Kansas, 1200 Sunnyside Ave., Lawrence, KS 66045
| | - Stacy A Krueger-Hadfield
- Department of Biology, University of Alabama, Birmingham, 1300 University Blvd., Birmingham, AL 35294
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19
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McCoy SJ, Krueger‐Hadfield SA, Mieszkowska N. Evolutionary Phycology: Toward a Macroalgal Species Conceptual Framework. JOURNAL OF PHYCOLOGY 2020; 56:1404-1413. [PMID: 32726874 PMCID: PMC7883729 DOI: 10.1111/jpy.13059] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/26/2020] [Accepted: 07/16/2020] [Indexed: 06/11/2023]
Abstract
Species concepts formalize evolutionary and ecological processes, but often conflict with one another when considering the mechanisms that ultimately lead to species delimitation. Evolutionary biologists are, however, recognizing that the conceptualization of a species is separate and distinct from the delimitation of species. Indeed, if species are generally defined as separately evolving metapopulation lineages, then characteristics, such as reproductive isolation or monophyly, can be used as evidence of lineage separation and no longer conflict with the conceptualization of a species. However, little of this discussion has addressed the formalization of this evolutionary conceptual framework for macroalgal species. This may be due to the complexity and variation found in macroalgal life cycles. While macroalgal mating system variation and patterns of hybridization and introgression have been identified, complex algal life cycles generate unique eco-evolutionary consequences. Moreover, the discovery of frequent macroalgal cryptic speciation has not been accompanied by the study of the evolutionary ecology of those lineages, and, thus, an understanding of the mechanisms underlying such rampant speciation remain elusive. In this perspective, we aim to further the discussion and interest in species concepts and speciation processes in macroalgae. We propose a conceptual framework to enable phycological researchers and students alike to portray these processes in a manner consistent with dialogue at the forefront of evolutionary biology. We define a macroalgal species as an independently evolving metapopulation lineage, whereby we can test for reproductive isolation or the occupation of distinct adaptive zones, among other mechanisms, as secondary lines of supporting evidence.
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Affiliation(s)
- Sophie J. McCoy
- Department of Biological ScienceFlorida State University319 Stadium Dr.TallahasseeFlorida32312USA
| | - Stacy A. Krueger‐Hadfield
- Department of BiologyUniversity of Alabama at Birmingham1300 University BlvdBirminghamAlabama35294USA
| | - Nova Mieszkowska
- Department of Environmental SciencesUniversity of LiverpoolLiverpoolL69 3GPUK
- Marine Biological Association of the United KingdomThe LaboratoryCitadel HillPlymouthDevonPL1 2PBUK
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20
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Huanel OR, Nelson WA, Robitzch V, Mauger S, Faugeron S, Preuss M, Zuccarello GC, Guillemin ML. Comparative phylogeography of two Agarophyton species in the New Zealand archipelago. JOURNAL OF PHYCOLOGY 2020; 56:1575-1590. [PMID: 32609871 DOI: 10.1111/jpy.13046] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2020] [Accepted: 06/23/2020] [Indexed: 06/11/2023]
Abstract
Molecular studies have reported the coexistence of two species of Agarophyton in New Zealand: the newly described A.transtasmanicum with an apparently restricted distribution to some sites in the North Island, and the more widespread A.chilense. Here, we compared the distribution, genetic diversity, and structure of both Agarophyton species throughout the archipelago using sequences of the nuclear Internal Transcribed Spacer 2 (ITS2) marker. Agarophyton chilense's distribution was continuous and extensive along the North and South Islands, Stewart Island, and Chatham Island, and the genetic clusters were mostly concordant with boundaries between biogeographic regions. In contrast, specimens of A.transtasmanicum were collected in four sites broadly distributed in both the North and South Islands, with no clear spatial structure of the genetic diversity. Populations, where the species co-occurred, tended to display similar levels in genetic diversity for the two species. Demographic inferences supported a postglacial demographic expansion for two A.chilense genetic clusters, one present in the South Island and the eastern coast of the North Island, and the other present in northern South Island. A third genetic cluster located on the western coast of the North Island had a signature of long-term demographic stability. For A.transtasmanicum, the skyline plot also suggested a postglacial demographic expansion. Last, we developed a new molecular tool to quickly and easily distinguish between the two Agarophyton species, which could be used to ease future fine-scale population studies, especially in areas where the two species coexist.
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Affiliation(s)
- Oscar R Huanel
- Departamento de Ecología, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Casilla 114-D, Santiago, Chile
- CNRS, Sorbonne Université, UMI 3614, Evolutionary Biology and Ecology of Algae, Station Biologique de Roscoff, CS 90074, Place G. Tessier, 296888, Roscoff, France
| | - Wendy A Nelson
- National Institute of Water and Atmospheric Research, Wellington, 6021, New Zealand
- School of Biological Sciences, University of Auckland, Auckland, 1142, New Zealand
| | - Vanessa Robitzch
- Instituto de Ciencias Ambientales y Evolutivas, Facultad de Ciencias, Universidad Austral de Chile, Casilla 567, Valdivia, Chile
| | - Stéphane Mauger
- CNRS, Sorbonne Université, UMI 3614, Evolutionary Biology and Ecology of Algae, Station Biologique de Roscoff, CS 90074, Place G. Tessier, 296888, Roscoff, France
| | - Sylvain Faugeron
- Departamento de Ecología, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Casilla 114-D, Santiago, Chile
- CNRS, Sorbonne Université, UMI 3614, Evolutionary Biology and Ecology of Algae, Station Biologique de Roscoff, CS 90074, Place G. Tessier, 296888, Roscoff, France
| | - Maren Preuss
- School of Biological Sciences, Victoria University of Wellington, Wellington, 6140, New Zealand
| | - Giuseppe C Zuccarello
- School of Biological Sciences, Victoria University of Wellington, Wellington, 6140, New Zealand
| | - Marie-Laure Guillemin
- CNRS, Sorbonne Université, UMI 3614, Evolutionary Biology and Ecology of Algae, Station Biologique de Roscoff, CS 90074, Place G. Tessier, 296888, Roscoff, France
- Instituto de Ciencias Ambientales y Evolutivas, Facultad de Ciencias, Universidad Austral de Chile, Casilla 567, Valdivia, Chile
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21
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Becheler R, Guillemin M, Stoeckel S, Mauger S, Saunier A, Brante A, Destombe C, Valero M. After a catastrophe, a little bit of sex is better than nothing: Genetic consequences of a major earthquake on asexual and sexual populations. Evol Appl 2020; 13:2086-2100. [PMID: 32908606 PMCID: PMC7463374 DOI: 10.1111/eva.12967] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2019] [Revised: 03/04/2020] [Accepted: 03/05/2020] [Indexed: 11/27/2022] Open
Abstract
Catastrophic events can have profound effects on the demography of a population and consequently on genetic diversity. The dynamics of postcatastrophic recovery and the role of sexual versus asexual reproduction in buffering the effects of massive perturbations remain poorly understood, in part because the opportunity to document genetic diversity before and after such events is rare. Six natural (purely sexual) and seven cultivated (mainly clonal due to farming practices) populations of the red alga Agarophyton chilense were surveyed along the Chilean coast before, in the days after and 2 years after the 8.8 magnitude earthquake in 2010. The genetic diversity of sexual populations appeared sensitive to this massive perturbation, notably through the loss of rare alleles immediately after the earthquake. By 2012, the levels of diversity returned to those observed before the catastrophe, probably due to migration. In contrast, enhanced rates of clonality in cultivated populations conferred a surprising ability to buffer the instantaneous loss of diversity. After the earthquake, farmers increased the already high rate of clonality to maintain the few surviving beds, but most of them collapsed rapidly. Contrasting fates between sexual and clonal populations suggest that betting on strict clonality to sustain production is risky, probably because this extreme strategy hampered adaptation to the brutal environmental perturbation induced by the catastrophe.
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Affiliation(s)
- Ronan Becheler
- Centro de Conservación MarinaDepartamento de EcologíaFacultad de Ciencias BiológicasPontificia Universidad Católica de ChileCasillaChile
- UMI 3614Evolutionary Biology and Ecology of AlgaeCNRSSorbonne UniversitéUniversidad Austral de ChilePontificia Universidad Católica de ChileRoscoffFrance
| | - Marie‐Laure Guillemin
- UMI 3614Evolutionary Biology and Ecology of AlgaeCNRSSorbonne UniversitéUniversidad Austral de ChilePontificia Universidad Católica de ChileRoscoffFrance
- Instituto de Ciencias Ambientales y EvolutivasFacultad de CienciasUniversidad Austral de ChileValdiviaChile
| | - Solenn Stoeckel
- UMR1349 Institute for Genetics, Environment and Plant ProtectionINRALe RheuFrance
| | - Stéphane Mauger
- UMI 3614Evolutionary Biology and Ecology of AlgaeCNRSSorbonne UniversitéUniversidad Austral de ChilePontificia Universidad Católica de ChileRoscoffFrance
| | - Alice Saunier
- UMI 3614Evolutionary Biology and Ecology of AlgaeCNRSSorbonne UniversitéUniversidad Austral de ChilePontificia Universidad Católica de ChileRoscoffFrance
- Instituto de Ciencias Ambientales y EvolutivasFacultad de CienciasUniversidad Austral de ChileValdiviaChile
| | - Antonio Brante
- Departamento de EcologíaFacultad de CienciasUniversidad Católica de la Santísima Concepción (UCSC)ConcepciónChile
- Centro de Investigación en Biodiversidad y Ambientes Sustentables (CIBAS)UCSCConcepciónChile
| | - Christophe Destombe
- UMI 3614Evolutionary Biology and Ecology of AlgaeCNRSSorbonne UniversitéUniversidad Austral de ChilePontificia Universidad Católica de ChileRoscoffFrance
| | - Myriam Valero
- UMI 3614Evolutionary Biology and Ecology of AlgaeCNRSSorbonne UniversitéUniversidad Austral de ChilePontificia Universidad Católica de ChileRoscoffFrance
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22
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Arnaud-Haond S, Stoeckel S, Bailleul D. New insights into the population genetics of partially clonal organisms: When seagrass data meet theoretical expectations. Mol Ecol 2020; 29:3248-3260. [PMID: 32613610 DOI: 10.1111/mec.15532] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2020] [Revised: 05/30/2020] [Accepted: 06/11/2020] [Indexed: 01/23/2023]
Abstract
Seagrass meadows are among the most important coastal ecosystems in terms of both spatial extent and ecosystem services, but they are also declining worldwide. Understanding the drivers of seagrass meadow dynamics is essential for designing sound management, conservation and restoration strategies. However, poor knowledge of the effect of clonality on the population genetics of natural populations severely limits our understanding of the dynamics and connectivity of meadows. Recent modelling approaches have described the expected distributions of genotypic and genetic descriptors under increasing clonal rates, which may help us better understand and interpret population genetics data obtained for partial asexuals. Here, in the light of these recent theoretical developments, we revisited population genetics data for 165 meadows of four seagrass species. Contrasting shoot lifespan and rhizome turnover led to the prediction that the influence of asexual reproduction would increase along a gradient from Zostera noltii to Zostera marina, Cymodocea nodosa and Posidonia oceanica, with increasing departure from Hardy-Weinberg equilibrium (Fis ), mostly towards heterozygote excess, and decreasing genotypic richness (R). This meta-analysis provides a nested validation of this hypothesis at both the species and meadow scales through a significant relationship between Fis and R within each species. By empirically demonstrating the theoretical expectations derived from recent modelling approaches, this work calls for the use of Hardy-Weinberg equilibrium (Fis ) rather than only the strongly sampling-sensitive R to assess the importance of clonal reproduction (c), at least when the impact of selfing on Fis can be neglected. The results also emphasize the need to revise our appraisal of the extent of clonality and its influence on the dynamics, connectivity and evolutionary trajectory of partial asexuals in general, including in seagrass meadows, to develop the most accurate management strategies.
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Affiliation(s)
| | - Solenn Stoeckel
- IGEPP INRAE, Institut Agro, University of Rennes, Le Rheu, France
| | - Diane Bailleul
- Université de Montpellier, Ifremer, CNRS, IRD, MARBEC, Sète, France
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23
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Krueger-Hadfield SA, Ryan WH. Influence of nutrients on ploidy-specific performance in an invasive, haplodiplontic red macroalga. JOURNAL OF PHYCOLOGY 2020; 56:1114-1120. [PMID: 32348550 DOI: 10.1111/jpy.13011] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2019] [Accepted: 04/21/2020] [Indexed: 06/11/2023]
Abstract
Worldwide, macroalgae have invaded near-shore marine ecosystems. However, their haplodiplontic life cycles have complicated efforts to predict patterns of growth and spread, particularly since most theoretical predictions are derived from diplontic taxa (i.e., animals). To complete one revolution of the life cycle, two separate ploidy stages, often including separate haploid sexes, must pass through development and reproduction. In the case of the invasive, red macroalga Agarophyton vermiculophyllum, during the invasion of soft-sediment estuaries throughout the Northern Hemisphere, diploid tetrasporophytes came to dominate all free-floating populations and haploid gametophytes were consistently lost. The ecological hypothesis of nutrient limitation might contribute to an explanation of this pattern of tetrasporophytic dominance in free-floating populations. Under this hypothesis, gametophytes should outperform tetrasporophytes under nutrient limited conditions, but tetrasporophytes should be better able to exploit optimal or even abundant nutrient conditions, such as in eutrophic estuaries. We sampled tetrasporophytes, male gametophytes, and female gametophytes from two sites each located on either side of the Delmarva Peninsula that separates the Chesapeake Bay from the Atlantic Ocean. We subjected apices excised from multiple thalli from each life cycle stage to a nutrient-enriched and a nutrient-poor seawater treatment and assessed growth and survival. While nutrient addition increased growth rates, there was no significant difference among ploidies or sexes. Gametophytes did, however, suffer higher mortality than tetrasporophytes. We discuss how nutrient-dependent differences in growth and survival may contribute to observed patterns of tetrasporophytic dominance in soft-sediment A. vermiculophyllum populations.
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Affiliation(s)
- Stacy A Krueger-Hadfield
- Department of Biology, The University of Alabama at Birmingham, 1300 University Blvd, Birmingham, Alabama, 35924, USA
| | - Will H Ryan
- Department of Biology, The University of Alabama at Birmingham, 1300 University Blvd, Birmingham, Alabama, 35924, USA
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24
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Usandizaga S, Buschmann AH, Camus C, Kappes JL, Arnaud‐Haond S, Mauger S, Valero M, Guillemin ML. Better off alone? Compared performance of monoclonal and polyclonal stands of a cultivated red alga growth. Evol Appl 2020; 13:905-917. [PMID: 32431742 PMCID: PMC7232761 DOI: 10.1111/eva.12908] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2019] [Revised: 12/06/2019] [Accepted: 12/08/2019] [Indexed: 01/14/2023] Open
Abstract
The objective of this study was to test, using a field experiment, the effect of genotypic diversity on productivity of farmed populations (Ancud and Chaica, Chile) of the domesticated red alga Agarophyton chilense (formerly known as Gracilaria chilensis), a species considered as economically important in Chile. Monoclonal and polyclonal (4 and 8 genotypes) subplots were outplanted into the mid intertidal in Metri Bay (Puerto Montt, Chile) during summer, a season in which A. chilense face higher temperatures (>18°C) and low nitrogen availability (<4.00 μmol). Ancud farm genotypes show higher growth rates in the monoclonal rather than the two polyclonal subplots. A similar tendency, yet not significant, was discernible in Chaica. In addition, whatever the population of origin of the thalli, no effect of genotypic diversity was detected neither on the agar yield and its quality, nor on the epiphyte load. Such unexpected results of a higher performance in plots with a lower genotypic diversity could be explained (a) by human-assisted selection for dominant-best-performing genotypes that could counterbalance the negative effect caused by the low genotypic diversity in farms and (b) by the fact that the organisms inhabiting the algal mats do not impact the fitness of their host. Overall, the results obtained here suggest that despite farm induced selection lead to impoverished pools of genotypes, they may also have a positive effect of on the resistance of farmed populations to seasonal stressors. However, whether this may have a secondary negative effect on the longer term in a fluctuating environment remains to be determined, but may be avoided by adopting strategy of selection favoring different genotypes in space and time, as implemented in forestry.
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Affiliation(s)
- Sara Usandizaga
- Programa de Doctorado en Ciencias, mención Conservación y Manejo de Recursos NaturalesCentro i~mar and CeBiBUniversidad de Los LagosPuerto MonttChile
| | | | - Carolina Camus
- Centro i~mar and CeBiBUniversidad de Los LagosPuerto MonttChile
| | | | | | - Stéphane Mauger
- CNRSSorbonne UniversitéUMI 3614 Evolutionary Biology and Ecology of AlgaeUniversidad Austral de ChileRoscoff cedexFrance
| | - Myriam Valero
- CNRSSorbonne UniversitéUMI 3614 Evolutionary Biology and Ecology of AlgaePontificia Universidad Católica de ChileUniversidad Austral de ChileRoscoff cedexFrance
| | - Marie Laure Guillemin
- CNRSSorbonne UniversitéUMI 3614 Evolutionary Biology and Ecology of AlgaePontificia Universidad Católica de ChileUniversidad Austral de ChileRoscoff cedexFrance
- Facultad de CienciasCentro FONDAP de Investigación en Dinámica de Ecosistemas Marinos de Altas Latitudes (IDEAL)Instituto de Ciencias Ambientales y EvolutivasUniversidad Austral de ChileValdiviaChile
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25
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Krueger‐Hadfield SA. What's ploidy got to do with it? Understanding the evolutionary ecology of macroalgal invasions necessitates incorporating life cycle complexity. Evol Appl 2020; 13:486-499. [PMID: 32431731 PMCID: PMC7045718 DOI: 10.1111/eva.12843] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2019] [Revised: 06/09/2019] [Accepted: 07/06/2019] [Indexed: 01/04/2023] Open
Abstract
Biological invasions represent grave threats to terrestrial, aquatic, and marine ecosystems, but our understanding of the role of evolution during invasions remains rudimentary. In marine environments, macroalgae account for a large percentage of invaders, but their complicated life cycles render it difficult to move methodologies and predictions wholesale from species with a single, free-living ploidy stage, such as plants or animals. In haplodiplontic macroalgae, meiosis and fertilization are spatiotemporally separated by long-lived, multicellular haploid and diploid stages, and gametes are produced by mitosis, not meiosis. As a consequence, there are unique eco-evolutionary constraints that are not typically considered in invasions. First, selfing can occur in both monoicious (i.e., hermaphroditic) and dioicious (i.e., separate sexes) haplodiplontic macroalgae. In the former, fertilization between gametes produced by the same haploid thallus results in instantaneous, genome-wide homozygosity. In the latter, cross-fertilization between separate male and female haploids that share the same diploid parent is analogous to selfing in plants or animals. Separate sexes, therefore, cannot be used as a proxy for outcrossing. Second, selfing likely facilitates invasions (i.e., Baker's law) and the long-lived haploid stage may enable purging of deleterious mutations, further contributing to invasion success. Third, asexual reproduction will result in the dominance of one ploidy and/or sex and the loss of the other(s). Whether or not sexual reproduction can be recovered depends on which stage is maintained. Finally, fourth, haplodiplontic life cycles are predicted to be maintained through niche differentiation in the haploid and diploid stages. Empirical tests are rare, but fundamental to our understanding of macroalgal invasion dynamics. By highlighting these four phenomena, we can build a framework with which to empirically and theoretically address important gaps in the literature on marine evolutionary ecology, of which biological invasions can serve as unnatural laboratories.
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26
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Bellgrove A, Nakaya F, Serisawa Y, Matsuyama-Serisawa K, Kagami Y, Jones PM, Suzuki H, Kawano S, Aoki MN. Maintenance of Complex Life Cycles Via Cryptic Differences In The Ecophysiology Of Haploid And Diploid Spores Of An Isomorphic Red Alga 1. JOURNAL OF PHYCOLOGY 2020; 56:159-169. [PMID: 31595519 DOI: 10.1111/jpy.12930] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2018] [Accepted: 09/19/2019] [Indexed: 06/10/2023]
Abstract
Recognition of the wide diversity of organisms that maintain complex haploid-diploid life cycles has generated interest in understanding the evolution and persistence of such life cycles. We empirically tested the model where complex haploid-diploid life cycles may be maintained by subtle/cryptic differences in the vital rates of isomorphic haploid-diploids, by examining the ecophysiology of haploid tetraspores and diploid carpospores of the isomorphic red alga Chondrus verrucosus. While tetraspores and carpospores of this species did not differ in size or autofluorescence, concentrations of phycobiliproteins of carpospores were greater than that of tetraspores. However, tetraspores were more photosynthetically competent than carpospores over a broader range of photosynthetic photon flux densities (PPFDs) and at PPFDs found at both the depth that C. verrucosus is found at high tide and in surface waters in which planktonic propagules might disperse. These results suggest potential differences in dispersal potential and reproductive success of haploid and diploid spores. Moreover, these cryptic differences in ecological niche partitioning of haploid and diploid spores contribute to our understanding of some of the differences between these ploidy stages that may ultimately lead to the maintenance of the complex haploid-diploid life cycle in this isomorphic red alga.
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Affiliation(s)
- Alecia Bellgrove
- School of Life & Environmental Sciences, Centre for Integrative Ecology, Deakin University, PO Box 423, Warrnambool, Victoria, 3280, Australia
| | - Fumio Nakaya
- Science and Education Centre, Ochanomizu University, 2-1-1 Ohtsuka, Bunkyo, Tokyo, 112-8610, Japan
| | - Yukihiko Serisawa
- Faculty of Education, University of Yamanashi, Takeda 4-4-37, Kofu, Yamanashi, 400-8510, Japan
| | | | - Yayoi Kagami
- Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba, 277-8562, Japan
| | - Paul M Jones
- School of Biological Sciences, Monash University, Clayton, Victoria, 3800, Australia
| | - Heikichi Suzuki
- School of Marine Science and Technology, Tokai University, Shimizu-Orido 3-20-1, Shizuoka, 424-8610, Japan
| | - Shigeyuki Kawano
- Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba, 277-8562, Japan
| | - Masakazu N Aoki
- Shimoda Marine Research Centre, University of Tsukuba, 5-10-1 Shimoda, Shizuoka, 415-0025, Japan
- Graduate School of Agricultural Science, Tohoku University, 468-1 Aoba, Aramaki, Aoba, Sendai, Miyagi, 980-0845, Japan
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27
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Krueger-Hadfield SA, Blakeslee AMH, Fowler AE. Incorporating Ploidy Diversity into Ecological and Community Genetics. JOURNAL OF PHYCOLOGY 2019; 55:1198-1207. [PMID: 31349373 DOI: 10.1111/jpy.12906] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/04/2019] [Accepted: 07/11/2019] [Indexed: 06/10/2023]
Abstract
Studies in ecological and community genetics have advanced our understanding of the role of intraspecific diversity in structuring communities and ecosystems. However, in near-shore marine communities, these studies have mostly been restricted to seagrasses, marsh plants, and oysters. Yet, macroalgae are critically important ecosystem engineers in these communities. Greater intraspecific diversity in a macroalgal ecosystem engineer should result in higher primary and secondary production and community resilience. The paucity of studies investigating the consequences of macroalgal intraspecific genetic variation might be due, in part, to the complexity of macroalgal life cycles. The majority of macroalgae have seemingly subtle, but in actuality, profoundly different life cycles than the more typical animal and angiosperm models. Here, we develop a novel genetic diversity metric, PHD , that incorporates the ratio of gametophytic to sporophytic thalli in natural populations. This metric scales from 0 to 1 like many common genetic diversity metrics, such as genotypic richness, enabling comparisons among metrics. We discuss PHD and examples from the literature, with specific reference to the widespread, red seaweed Agarophyton vermiculophyllum. We also discuss a sex diversity metric, PFM , which also scales from 0 to 1, but fewer studies have identified males and females in natural populations. Nevertheless, by incorporating these novel metrics into the repertoire of diversity metrics, we can explore the role of genetic diversity in community and ecosystem dynamics with an emphasis on the unique biology of many macroalgae, as well as other haplodiplontic taxa such as ferns, foraminiferans, and some fungi.
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Affiliation(s)
- Stacy A Krueger-Hadfield
- Department of Biology, University of Alabama at Birmingham, 1300 University Blvd CH464, Birmingham, Alabama, 35294, USA
| | - April M H Blakeslee
- Department of Biology, East Carolina University, E 10th Street, Greenville, North Carolina, 27858, USA
| | - Amy E Fowler
- Department of Environmental Science and Policy, George Mason University, 4400 University Dr, Fairfax, Virginia, 22030, USA
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28
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Ayres-Ostrock LM, Valero M, Mauger S, Oliveira MC, Plastino EM, Guillemin ML, Destombe C. Dual influence of terrestrial and marine historical processes on the phylogeography of the Brazilian intertidal red alga Gracilaria caudata. JOURNAL OF PHYCOLOGY 2019; 55:1096-1114. [PMID: 31206679 DOI: 10.1111/jpy.12892] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2018] [Accepted: 05/24/2019] [Indexed: 06/09/2023]
Abstract
In this study, we explored how past terrestrial and marine climate changes have interacted to shape the phylogeographic patterns of the intertidal red seaweed Gracilaria caudata, an economically important species exploited for agar production in the Brazilian north-east. Seven sites were sampled along the north-east tropical and south-east sub-tropical Brazilian coast. The genetic diversity and structure of G. caudata was inferred using a combination of mitochondrial (COI and cox2-3), chloroplast (rbcL) and 15 nuclear microsatellite markers. A remarkable congruence between nuclear, mitochondrial and chloroplast data revealed clear separation between the north-east (from 03° S to 08° S) and the south-east (from 20° S to 23° S) coast of Brazil. These two clades differ in their demographic histories, with signatures of recent demographic expansions in the north-east and divergent populations in the south-east, suggesting the maintenance of several refugia during the last glacial maximum due to sea-level rise and fall. The Bahia region (around 12° S) occupies an intermediate position between both clades. Microsatellites and mtDNA markers showed additional levels of genetic structure within each sampled site located south of Bahia. The separation between the two main groups in G. caudata is likely recent, probably occurring during the Quaternary glacial cycles. The genetic breaks are concordant with (i) those separating terrestrial refugia, (ii) major river outflows and (iii) frontiers between tropical and subtropical regions. Taken together with previously published eco-physiological studies that showed differences in the physiological performance of the strains from distinct locations, these results suggest that the divergent clades in G. caudata correspond to distinct ecotypes in the process of incipient speciation and thus should be considered for the management policy of this commercially important species.
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Affiliation(s)
- Lígia M Ayres-Ostrock
- Instituto de Biociências, Universidade de São Paulo, Rua do Matão 277, CEP: 05508-090, São Paulo, SP, Brazil
| | - Myriam Valero
- CNRS, Sorbonne Université, UMI 3614, Evolutionary Biology and Ecology of Algae, Station Biologique de Roscoff, CS 90074, 29688, Roscoff, France
| | - Stéphane Mauger
- CNRS, Sorbonne Université, UMI 3614, Evolutionary Biology and Ecology of Algae, Station Biologique de Roscoff, CS 90074, 29688, Roscoff, France
| | - Mariana C Oliveira
- Instituto de Biociências, Universidade de São Paulo, Rua do Matão 277, CEP: 05508-090, São Paulo, SP, Brazil
| | - Estela M Plastino
- Instituto de Biociências, Universidade de São Paulo, Rua do Matão 277, CEP: 05508-090, São Paulo, SP, Brazil
| | - Marie-Laure Guillemin
- CNRS, Sorbonne Université, UMI 3614, Evolutionary Biology and Ecology of Algae, Station Biologique de Roscoff, CS 90074, 29688, Roscoff, France
- Instituto de Ciencias Ambientales y Evolutivas, Facultad de Ciencias, Universidad Austral de Chile, Valdivia, Chile
| | - Christophe Destombe
- CNRS, Sorbonne Université, UMI 3614, Evolutionary Biology and Ecology of Algae, Station Biologique de Roscoff, CS 90074, 29688, Roscoff, France
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29
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Robitzch V, Arakaki N, Mauger S, Zapata Rojas JC, Guillemin ML. Stranded alone: The first reported Peruvian population of Agarophyton chilensis is a single-male's clone. ALGAL RES 2019. [DOI: 10.1016/j.algal.2019.101527] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
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30
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Vieira VMNCS, Engelen AH, Huanel OR, Guillemin ML. Differentiation of haploid and diploid fertilities in Gracilaria chilensis affect ploidy ratio. BMC Evol Biol 2018; 18:183. [PMID: 30518318 PMCID: PMC6280411 DOI: 10.1186/s12862-018-1287-x] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2017] [Accepted: 11/02/2018] [Indexed: 11/30/2022] Open
Abstract
BACKGROUND Algal isomorphic biphasic life cycles alternate between free-living diploid (tetrasporophytes) and haploid (dioicious gametophytes) phases and the hypotheses explaining their maintenance are still debated. Classic models state that conditional differentiation between phases is required for the evolutionary stability of biphasic life cycles while other authors proposed that the uneven ploidy abundances observed in the field are explained by their cytological differences in spore production. RESULTS We monitored the state and fate of individuals of the red seaweed Gracilaria chilensis periodically for 3 years in five intertidal pools from two sites with distinct conditions. We tested for differentiation in fecundity and spore survival among the gametophyte males and females (haploids) and the tetrasporophytes (diploids). We tested for the influence of fecundity and spore survival on the observed uneven ploidy abundances in recruits. The probability of a frond becoming fecund was size-dependent, highest for the haploid males and lowest for the haploid females, with the diploids displaying intermediate probabilities. Fecund diploids released more tetraspores than carpospores released by the haploid females. Spore survival depended on ploidy and on the local density of co-habiting adult fronds. An advantage of diploid over haploid germlings was observed at very low and very high adult fronds densities. CONCLUSIONS Neither spore production nor spore survival determined the highly variable ploidy ratio within G. chilensis recruits. This result invalidates the hypothesis of natural cytological differences in spore production as the only driver of uneven field ploidy abundances in this species. Diploid spores (carpospores) survived better than haploid spores (tetraspores), especially in locations and time periods that were associated with the occurrence of strong biotic and abiotic stressors. We hypothesise that carpospore survival is higher due to support by their haploid female progenitors passing-on nutrients and chemical compounds improving survival under stressful conditions.
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Affiliation(s)
- Vasco M. N. C. S. Vieira
- MARETEC, Instituto Superior Técnico, Universidade Técnica de Lisboa, Av. Rovisco Pais, 1049-001 Lisbon, Portugal
| | - Aschwin H. Engelen
- CCMAR, Center of Marine Science, University of Algarve, Campus Gambelas, 8005-139 Faro, Portugal
| | - Oscar R. Huanel
- Instituto de Ciencias Ambientales y Evolutivas, Facultad de Ciencias, Universidad Austral de Chile, Casilla 567, Valdivia, Chile
- Departamento de Ecología, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Casilla 114, -D Santiago, Chile
| | - Marie-Laure Guillemin
- Instituto de Ciencias Ambientales y Evolutivas, Facultad de Ciencias, Universidad Austral de Chile, Casilla 567, Valdivia, Chile
- CNRS, Sorbonne Universités, UPMC University Paris VI, UMI 3614, Evolutionary Biology and Ecology of Algae, Station Biologique de Roscoff, CS 90074, Place G. Tessier, 296888, Roscoff, France
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31
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Santelices B, Gallegos Sánchez C, González AV. Intraorganismal genetic heterogeneity as a source of genetic variation in modular macroalgae. JOURNAL OF PHYCOLOGY 2018; 54:767-771. [PMID: 30206942 DOI: 10.1111/jpy.12784] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2018] [Accepted: 09/04/2018] [Indexed: 06/08/2023]
Abstract
Genetic diversity is considered a key factor of population survival and evolution, especially in changing environments. Genetic diversity arises from mutations in the DNA sequence of cell lines and from there it reaches the level of organisms, populations, and regions. However, many previous studies have not considered the organism architecture or pattern of thallus construction, ignoring the potential genetic complexities that intraorganismal genetic heterogeneity could generate in modular organisms. In seaweeds, modularity and clonality exist in many species. Modular organization has been related to advantages in terms of rapid construction and recovery after the loss of individual modules, which have their own demographic properties as they generate, mature, senesce, and die. Based on recent evidence from the literature, we suggest that modules also have their own genetic properties. Specifically, modular seaweeds have two possible sources of genetic diversity at the individual level: the heterozygosity of the genotypes composing the genet, and genetic heterogeneity among the modules within a genet (i.e., intraclonal genetic variability). Both sources of genetic diversity can have ecological and evolutionary consequences, and most of them must be considered in research on modular seaweeds. Linking intraorganismal genetic diversity with clonal architecture and propagation styles may help us to understand important ecological and evolutionary processes such as speciation modes, invasive capacities, or farming potential.
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Affiliation(s)
- Bernabé Santelices
- Departamento de Ecología, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Casilla 114-D, Alameda 340, Santiago, 8331150, Chile
| | - Cristóbal Gallegos Sánchez
- Departamento de Ecología, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Casilla 114-D, Alameda 340, Santiago, 8331150, Chile
| | - Alejandra V González
- Departamento de Ciencias Ecológicas, Facultad de Ciencias, Universidad de Chile, Casilla 653, Las Palmeras 3425, Ñuñoa, Santiago, 7800024, Chile
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Usandizaga S, Camus C, Kappes JL, Guillemin ML, Buschmann AH. Nutrients, but not genetic diversity, affect Gracilaria chilensis (Rhodophyta) farming productivity and physiological responses. JOURNAL OF PHYCOLOGY 2018; 54:860-869. [PMID: 30222862 DOI: 10.1111/jpy.12785] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2018] [Accepted: 09/04/2018] [Indexed: 06/08/2023]
Abstract
In terrestrial plants, it is well known that genetic diversity can affect responses to abiotic and biotic stress and have important consequences on farming. However, very little is known about the interactive effects of genetic and environmental factors on seaweed crops. We conducted a field experiment on Gracilaria chilensis to determine the effect of heterozygosity and nutrient addition on two southern Chilean farms: Ancud and Chaica. In addition to growth rate and productivity, we measured photosynthetic responses, photosynthetic pigment concentration (chlorophyll a and phycobiliproteins), C:N ratio (C:N), and epiphytic load. Nutrient addition affected the growth rate, productivity, phycobilin, and C:N content, but not the epiphytic load. These results were independent of the heterozygosity of the strains used in the experiments. Interestingly, depending on the sampled sites, distinct photosynthetic responses (i.e., maximal quantum yield, Fv /Fm , and maximal electron transport rate, ETRmax ) to nutrient addition were observed. We propose that thallus selection over the past few decades may have led to ecological differentiation between G. chilensis from Chaica and Ancud. The lack of effect of heterozygosity on growth and physiological responses could be related to the species domestication history in which there is a limited range of genetic variation in farms. We suggest that the existing levels of heterozygosity among our thalli is not sufficient to detect any significant effect of genetic diversity on growth or productivity in Metri bay, our experimental site located close to the city of Puerto Montt, during summer under nitrogen limiting conditions.
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Affiliation(s)
- Sara Usandizaga
- Programa de Doctorado en Ciencias, mención Conservación y Manejo de Recursos Naturales, Centro i˜mar and CeBiB, Universidad de Los Lagos, Camino Chinquihue Km 6, Puerto Montt, Chile
| | - Carolina Camus
- Centro i˜mar and CeBiB, Universidad de Los Lagos, Camino Chinquihue Km 6, Puerto Montt, Chile
| | - José Luis Kappes
- Centro i˜mar and CeBiB, Universidad de Los Lagos, Camino Chinquihue Km 6, Puerto Montt, Chile
| | - Marie Laure Guillemin
- Centro FONDAP de Investigación en Dinámica de Ecosistemas Marinos de Altas Latitudes (IDEAL), Instituto de Ciencias Ambientales y Evolutivas, Facultad de Ciencias, Universidad Austral de Chile, Valdivia, Chile
- CNRS, Sorbonne Université, Pontificia Universidad Catolica de Chile, Universidad Austral de Chile, UMI Evolutionary Biology and Ecology of Algae, Station Biologique de Roscoff, 29680, Roscoff, France
| | - Alejandro H Buschmann
- Centro i˜mar and CeBiB, Universidad de Los Lagos, Camino Chinquihue Km 6, Puerto Montt, Chile
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Haploid females in the isomorphic biphasic life-cycle of Gracilaria chilensis excel in survival. BMC Evol Biol 2018; 18:174. [PMID: 30458728 PMCID: PMC6247624 DOI: 10.1186/s12862-018-1285-z] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2017] [Accepted: 10/31/2018] [Indexed: 12/02/2022] Open
Abstract
Background Conditional differentiation is one of the most fundamental drivers of biodiversity. Competitive entities (usually species) differ in environmental or ecological niche enabling them to co-exist. Conditional differentiation of haploid and diploid generations is considered to be a requirement for the evolutionary stability of isomorphic biphasic life-cycles and the cause for the natural occurrence of both phases at uneven abundances. Theoretically, stage dependent survival rates are the most efficient way to explain conditional differentiation. Results We tested for conditional differentiation in survival rates among life stages (haploid males, haploid females, and diploids) of Gracilaria chilensis, an intertidal red alga occurring along the Chilean shores. Therefore, the fate of individuals was followed periodically for 3 years in five intertidal pools and, for the first time in isomorphic red algae, a composite model of the instantaneous survival rates was applied. The results showed the survival dependency on density (both competition and Allee effects), fertility, age, size, season and location, as well as the differentiation among stages for the survival dependencies of these factors. The young haploid females survived more than the young of the other stages under Allee effects during the environmentally stressful season at the more exposed locations, and under self-thinning during the active growth season. Furthermore, fertile haploid females had a higher survival than fertile haploid males or fertile diploids. Conclusions Here, we show a survival advantage of haploids over diploids. The haploid females probably optimize their resource management targeting structural and physiological adaptations that significantly enhance survival under harsher conditions. In a companion paper we demonstrate a fertility advantage of diploids over haploids. Together, the survival and fertility differentiation support the evolution and prevalence of biphasic life-cycles. Electronic supplementary material The online version of this article (10.1186/s12862-018-1285-z) contains supplementary material, which is available to authorized users.
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Guzinski J, Ballenghien M, Daguin‐Thiébaut C, Lévêque L, Viard F. Population genomics of the introduced and cultivated Pacific kelp Undaria pinnatifida: Marinas-not farms-drive regional connectivity and establishment in natural rocky reefs. Evol Appl 2018; 11:1582-1597. [PMID: 30344629 PMCID: PMC6183462 DOI: 10.1111/eva.12647] [Citation(s) in RCA: 33] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2018] [Revised: 05/02/2018] [Accepted: 05/09/2018] [Indexed: 01/03/2023] Open
Abstract
Ports and farms are well-known primary introduction hot spots for marine non-indigenous species (NIS). The extent to which these anthropogenic habitats are sustainable sources of propagules and influence the evolution of NIS in natural habitats was examined in the edible seaweed Undaria pinnatifida, native to Asia and introduced to Europe in the 1970s. Following its deliberate introduction 40 years ago along the French coast of the English Channel, this kelp is now found in three contrasting habitat types: farms, marinas and natural rocky reefs. In the light of the continuous spread of this NIS, it is imperative to better understand the processes behind its sustainable establishment in the wild. In addition, developing effective management plans to curtail the spread of U. pinnatifida requires determining how the three types of populations interact with one another. In addition to an analysis using microsatellite markers, we developed, for the first time in a kelp, a ddRAD-sequencing technique to genotype 738 individuals sampled in 11 rocky reefs, 12 marinas, and two farms located along ca. 1,000 km of coastline. As expected, the RAD-seq panel showed more power than the microsatellite panel for identifying fine-grained patterns. However, both panels demonstrated habitat-specific properties of the study populations. In particular, farms displayed very low genetic diversity and no inbreeding conversely to populations in marinas and natural rocky reefs. In addition, strong, but chaotic regional genetic structure, was revealed, consistent with human-mediated dispersal (e.g., leisure boating). We also uncovered a tight relationship between populations in rocky reefs and those in nearby marinas, but not with nearby farms, suggesting spillover from marinas into the wild. At last, a temporal survey spanning 20 generations showed that wild populations are now self-sustaining, albeit there was no evidence for local adaptation to any of the three habitats. These findings highlight that limiting the spread of U. pinnatifida requires efficient management policies that also target marinas.
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Affiliation(s)
- Jaromir Guzinski
- Laboratory Adaptation and Diversity in Marine Environments (UMR 7144 CNRS SU)CNRSSorbonne UniversitéRoscoffFrance
- Laboratory Evolutionary Biology and Ecology of Algae (UMI 3614 CNRS SU)CNRSSorbonne UniversitéRoscoffFrance
| | - Marion Ballenghien
- Laboratory Adaptation and Diversity in Marine Environments (UMR 7144 CNRS SU)CNRSSorbonne UniversitéRoscoffFrance
| | - Claire Daguin‐Thiébaut
- Laboratory Adaptation and Diversity in Marine Environments (UMR 7144 CNRS SU)CNRSSorbonne UniversitéRoscoffFrance
| | - Laurent Lévêque
- Fédération de Recherche (FR 2424 CNRS SU)CNRSSorbonne UniversitéRoscoffFrance
| | - Frédérique Viard
- Laboratory Adaptation and Diversity in Marine Environments (UMR 7144 CNRS SU)CNRSSorbonne UniversitéRoscoffFrance
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Lees LE, Krueger-Hadfield SA, Clark AJ, Duermit EA, Sotka EE, Murren CJ. Nonnative Gracilaria vermiculophylla tetrasporophytes are more difficult to debranch and are less nutritious than gametophytes. JOURNAL OF PHYCOLOGY 2018; 54:471-482. [PMID: 29676788 DOI: 10.1111/jpy.12746] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2017] [Accepted: 03/22/2018] [Indexed: 06/08/2023]
Abstract
Theory predicts that the maintenance of haplodiplontic life cycles requires ecological differences between the haploid gametophytes and diploid sporophytes, yet evidence of such differences remain scarce. The haplodiplontic red seaweed Gracilaria vermiculophylla has invaded the temperate estuaries of the Northern Hemisphere, where it commonly modifies detrital and trophic pathways. In native populations, abundant hard substratum enables spore settlement, and gametophyte:tetrasporophyte ratios are ~40:60. In contrast, many non-native populations persist in soft-sediment habitats without abundant hard substratum, and can be 90%-100% tetrasporophytic. To test for ecologically relevant phenotypic differences, we measured thallus morphology, protein content, organic content, "debranching resistance" (i.e., tensile force required to remove a branch from its main axis node), and material properties between male gametophytes, female gametophytes, and tetrasporophytes from a single, nonnative site in Charleston Harbor, South Carolina, USA in 2015 and 2016. Thallus length and surface area to volume ratio differed between years, but were not significantly different between ploidies. Tetrasporophytes had lower protein content than gametophytes, suggesting the latter may be more attractive to consumers. More force was required to pull a branch from the main axis of tetrasporophytes relative to gametophytes. A difference in debranching resistance may help to maintain tetrasporophyte thallus durability relative to gametophytes, providing a potential advantage in free-floating populations. These data may shed light on the invasion ecology of an important ecosystem engineer, and may advance our understanding of life cycle evolution and the maintenance of life cycle diversity.
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Affiliation(s)
- Lauren E Lees
- Grice Marine Laboratory, College of Charleston, 205 Fort Johnson Rd, Charleston, South Carolina, 29414, USA
- Department of Biology, College of Charleston, 66 George Street, Charleston, South Carolina, 29424, USA
| | - Stacy A Krueger-Hadfield
- Grice Marine Laboratory, College of Charleston, 205 Fort Johnson Rd, Charleston, South Carolina, 29414, USA
- Department of Biology, College of Charleston, 66 George Street, Charleston, South Carolina, 29424, USA
- Department of Biology, University of Alabama at Birmingham, Birmingham, Alabama, 35924, USA
| | - Andrew J Clark
- Department of Biology, College of Charleston, 66 George Street, Charleston, South Carolina, 29424, USA
| | - Elizabeth A Duermit
- Grice Marine Laboratory, College of Charleston, 205 Fort Johnson Rd, Charleston, South Carolina, 29414, USA
- Department of Biology, College of Charleston, 66 George Street, Charleston, South Carolina, 29424, USA
| | - Erik E Sotka
- Grice Marine Laboratory, College of Charleston, 205 Fort Johnson Rd, Charleston, South Carolina, 29414, USA
- Department of Biology, College of Charleston, 66 George Street, Charleston, South Carolina, 29424, USA
| | - Courtney J Murren
- Department of Biology, College of Charleston, 66 George Street, Charleston, South Carolina, 29424, USA
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Gallegos Sánchez CF, Beltrán J, Flores V, González AV, Santelices B. Testing the effects of heterozygosity on growth rate plasticity in the seaweed Gracilaria chilensis (Rhodophyta). Ecol Evol 2018; 8:5741-5751. [PMID: 29938089 PMCID: PMC6010757 DOI: 10.1002/ece3.4113] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2017] [Revised: 02/09/2018] [Accepted: 03/29/2018] [Indexed: 11/11/2022] Open
Abstract
Heterozygosity has been positively associated with fitness and population survival. However, the relationship between heterozygosity and adaptive phenotypic plasticity (i.e., plasticity which results in fitness homeostasis or improvement in changing environments) is unclear and has been poorly explored in seaweeds. In this study, we explored this relationship in the clonal red seaweed, Gracilaria chilensis by conducting three growth rate plasticity experiments under contrasting salinity conditions and by measuring heterozygosity with five microsatellite DNA markers. Firstly, we compared growth rate plasticity between the haploid and diploid phases. Secondly, we compared growth rate plasticity between diploids with different numbers of heterozygous loci. Finally, we compared growth rate plasticity between diploid plants from two populations that are expected to exhibit significant differences in heterozygosity. We found that, (i) diploids displayed a higher growth rate and lower growth rate plasticity than haploids, (ii) diploids with a higher number of heterozygous loci displayed lower growth rate plasticity than those exhibiting less heterozygosity, and (iii) diploid sporophytes from the population with higher heterozygosity displayed lower growth rate plasticity than those with lower heterozygosity. Accordingly, this study suggests that heterozygosity is inversely related to growth rate plasticity in G. chilensis. However, better genetic tools in seaweeds are required for a more definitive conclusion on the relationship between heterozygosity and phenotypic plasticity.
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Affiliation(s)
| | - Jessica Beltrán
- Departamento de EcologíaFacultad de Ciencias BiológicasPontificia Universidad Católica de ChileSantiagoChile
| | - Verónica Flores
- Departamento de EcologíaFacultad de Ciencias BiológicasPontificia Universidad Católica de ChileSantiagoChile
| | - Alejandra V. González
- Departamento de Ciencias EcológicasFacultad de CienciasUniversidad de ChileSantiagoChile
| | - Bernabé Santelices
- Departamento de EcologíaFacultad de Ciencias BiológicasPontificia Universidad Católica de ChileSantiagoChile
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Camus C, Faugeron S, Buschmann AH. Assessment of genetic and phenotypic diversity of the giant kelp, Macrocystis pyrifera, to support breeding programs. ALGAL RES 2018. [DOI: 10.1016/j.algal.2018.01.004] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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Becheler R, Masson JP, Arnaud-Haond S, Halkett F, Mariette S, Guillemin ML, Valero M, Destombe C, Stoeckel S. ClonEstiMate, a Bayesian method for quantifying rates of clonality of populations genotyped at two-time steps. Mol Ecol Resour 2017; 17:e251-e267. [DOI: 10.1111/1755-0998.12698] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2016] [Revised: 06/01/2017] [Accepted: 06/22/2017] [Indexed: 11/29/2022]
Affiliation(s)
- Ronan Becheler
- Evolutionary Biology and Ecology of Algae; CNRS; Sorbonne Universités; UPMC; University of Paris VI; UC; UACH; UMI 3614; Roscoff France
| | - Jean-Pierre Masson
- Institute for Genetics; Environment and Plant Protection; INRA; UMR1349; Le Rheu France
| | - Sophie Arnaud-Haond
- Ifremer; MARBEC (Marine Biodiversity, Exploitation and Conservation); Boulevard Jean Monet; 34200 SETE
| | | | | | - Marie-Laure Guillemin
- Evolutionary Biology and Ecology of Algae; CNRS; Sorbonne Universités; UPMC; University of Paris VI; UC; UACH; UMI 3614; Roscoff France
- Facultad de Ciencias; Instituto de Ciencias Ambientales y Evolutivas; Universidad Austral de Chile; Valdivia Chile
| | - Myriam Valero
- Evolutionary Biology and Ecology of Algae; CNRS; Sorbonne Universités; UPMC; University of Paris VI; UC; UACH; UMI 3614; Roscoff France
| | - Christophe Destombe
- Evolutionary Biology and Ecology of Algae; CNRS; Sorbonne Universités; UPMC; University of Paris VI; UC; UACH; UMI 3614; Roscoff France
| | - Solenn Stoeckel
- Institute for Genetics; Environment and Plant Protection; INRA; UMR1349; Le Rheu France
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Ng PK, Lin SM, Lim PE, Hurtado AQ, Phang SM, Yow YY, Sun Z. Genetic and morphological analyses of Gracilaria firma and G. changii (Gracilariaceae, Rhodophyta), the commercially important agarophytes in western Pacific. PLoS One 2017; 12:e0182176. [PMID: 28759629 PMCID: PMC5536327 DOI: 10.1371/journal.pone.0182176] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2017] [Accepted: 07/13/2017] [Indexed: 11/19/2022] Open
Abstract
Many studies classifying Gracilaria species for the exploitation of agarophytes and the development of the agar industry were conducted before the prevalence of molecular tools, resulting in the description of many species based solely on their morphology. Gracilaria firma and G. changii are among the commercially important agarophytes from the western Pacific; both feature branches with basal constrictions that taper toward acute apices. In this study, we contrasted the morpho-anatomical circumscriptions of the two traditionally described species with molecular data from samples that included representatives of G. changii collected from its type locality. Concerted molecular analyses using the rbcL and cox1 gene sequences, coupled with morphological observations of the collections from the western Pacific, revealed no inherent differences to support the treatment of the two entities as distinct taxa. We propose merging G. changii (a later synonym) into G. firma and recognize G. firma based on thallus branches with abrupt basal constrictions that gradually taper toward acute (or sometimes broken) apices, cystocarps consisting of small gonimoblast cells and inconspicuous multinucleate tubular nutritive cells issuing from gonimoblasts extending into the inner pericarp at the cystocarp floor, as well as deep spermatangial conceptacles of the verrucosa-type. The validation of specimens under different names as a single genetic species is useful to allow communication and knowledge transfer among groups from different fields. This study also revealed considerably low number of haplotypes and nucleotide diversity with apparent phylogeographic patterns for G. firma in the region. Populations from the Philippines and Taiwan were divergent from each other as well as from the populations from Malaysia, Thailand, Singapore and Vietnam. Establishment of baseline data on the genetic diversity of this commercially important agarophyte is relevant in the context of cultivation, as limited genetic diversity may jeopardize the potential for its genetic improvement over time.
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Affiliation(s)
- Poh-Kheng Ng
- Institute of Marine Biology, National Taiwan Ocean University, Keelung, Taiwan, R.O.C
| | - Showe-Mei Lin
- Institute of Marine Biology, National Taiwan Ocean University, Keelung, Taiwan, R.O.C
| | - Phaik-Eem Lim
- Institute of Ocean and Earth Sciences, University of Malaya, Kuala Lumpur, Malaysia
| | - Anicia Q. Hurtado
- Integrated Services for the Development of Aquaculture and Fisheries (ISDA) Inc., Tabuc Suba, Iloilo City, Philippines
| | - Siew-Moi Phang
- Institute of Ocean and Earth Sciences, University of Malaya, Kuala Lumpur, Malaysia
| | - Yoon-Yen Yow
- Department of Biological Sciences, School of Science and Technology, Sunway University, Selangor, Malaysia
| | - Zhongmin Sun
- Laboratory of Marine Organism Taxonomy and Phylogeny, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
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Krueger-Hadfield SA, Kollars NM, Strand AE, Byers JE, Shainker SJ, Terada R, Greig TW, Hammann M, Murray DC, Weinberger F, Sotka EE. Genetic identification of source and likely vector of a widespread marine invader. Ecol Evol 2017. [PMID: 28649353 PMCID: PMC5478068 DOI: 10.1002/ece3.3001] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022] Open
Abstract
The identification of native sources and vectors of introduced species informs their ecological and evolutionary history and may guide policies that seek to prevent future introductions. Population genetics provides a powerful set of tools to identify origins and vectors. However, these tools can mislead when the native range is poorly sampled or few molecular markers are used. Here, we traced the introduction of the Asian seaweed Gracilaria vermiculophylla (Rhodophyta) into estuaries in coastal western North America, the eastern United States, Europe, and northwestern Africa by genotyping more than 2,500 thalli from 37 native and 53 non‐native sites at mitochondrial cox1 and 10 nuclear microsatellite loci. Overall, greater than 90% of introduced thalli had a genetic signature similar to thalli sampled from the coastline of northeastern Japan, strongly indicating this region served as the principal source of the invasion. Notably, northeastern Japan exported the vast majority of the oyster Crassostrea gigas during the 20th century. The preponderance of evidence suggests G. vermiculophylla may have been inadvertently introduced with C. gigas shipments and that northeastern Japan is a common source region for estuarine invaders. Each invaded coastline reflected a complex mix of direct introductions from Japan and secondary introductions from other invaded coastlines. The spread of G. vermiculophylla along each coastline was likely facilitated by aquaculture, fishing, and boating activities. Our ability to document a source region was enabled by a robust sampling of locations and loci that previous studies lacked and strong phylogeographic structure along native coastlines.
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Affiliation(s)
- Stacy A Krueger-Hadfield
- Department of Biology University of Alabama at Birmingham Birmingham AL USA.,Grice Marine Laboratory and the Department of Biology College of Charleston Charleston SC USA
| | - Nicole M Kollars
- Grice Marine Laboratory and the Department of Biology College of Charleston Charleston SC USA.,Present address: Center for Population Biology University of California Davis CA USA
| | - Allan E Strand
- Grice Marine Laboratory and the Department of Biology College of Charleston Charleston SC USA
| | - James E Byers
- Odum School of Ecology University of Georgia Athens GA USA
| | - Sarah J Shainker
- Grice Marine Laboratory and the Department of Biology College of Charleston Charleston SC USA
| | - Ryuta Terada
- United Graduate School of Agricultural Sciences Kagoshima University Kagoshima City Japan
| | - Thomas W Greig
- NOAA/National Ocean Service Center for Coastal Environmental Health and Biomolecular Research Charleston SC USA
| | - Mareike Hammann
- GEOMAR Helmholtz-Zentrum für Ozeanforschung Kiel Kiel Germany
| | - David C Murray
- Grice Marine Laboratory and the Department of Biology College of Charleston Charleston SC USA
| | | | - Erik E Sotka
- Grice Marine Laboratory and the Department of Biology College of Charleston Charleston SC USA
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Zhang J, Wang X, Yao J, Li Q, Liu F, Yotsukura N, Krupnova TN, Duan D. Effect of domestication on the genetic diversity and structure of Saccharina japonica populations in China. Sci Rep 2017; 7:42158. [PMID: 28176848 PMCID: PMC5296902 DOI: 10.1038/srep42158] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2016] [Accepted: 01/09/2017] [Indexed: 11/08/2022] Open
Abstract
Saccharina japonica is a commercially and ecologically important seaweed and is an excellent system for understanding the effects of domestication on marine crops. In this study, we used 19 selected simple sequence repeat (SSR) markers to investigate the influence of domestication on the genetic diversity and structure of S. japonica populations. Wild kelp populations exhibited higher genetic diversity than cultivated populations based on total NA, HE, HO, NP and AR. Discriminant analysis of principal components (DAPC), a neighbour-joining (NJ) tree and STRUCTURE analyses indicated that S. japonica populations could be divided into two groups (a cultivated/introduced group and a wild indigenous group) with significant genetic differentiation (P < 0.0001). Divergent selection, continuous inbreeding and inter-specific hybridization have caused the divergence of these two genetically separate gene pools. The significant genetic differentiation between northern and southern cultivated populations appears to be due to inter-specific hybridization and wild germplasm introduction during the domestication process. In addition, the cultivation of S. japonica has not resulted in any serious genetic disturbance of wild introduced S. japonica populations. An understanding of the genetic diversity and genetic structure of domesticated S. japonica will be necessary for further genetic improvement and effective use of germplasm.
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Affiliation(s)
- Jie Zhang
- Key Lab of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China
- Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266071, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Xiuliang Wang
- Key Lab of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China
- Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266071, China
| | - Jianting Yao
- Key Lab of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China
- Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266071, China
| | - Qiuying Li
- Key Lab of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China
- Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266071, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Fuli Liu
- Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, 266071, China
| | - Norishige Yotsukura
- Field Science Centre for Northern Biosphere, Hokkaido University, Sapporo, 060-0809, Japan
| | - Tatiana N. Krupnova
- Pacific Research Fisheries Centre (TINRO-Centre), Vladivostok, 690600, Russia
| | - Delin Duan
- Key Lab of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China
- Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266071, China
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Krueger‐Hadfield SA, Kollars NM, Byers JE, Greig TW, Hammann M, Murray DC, Murren CJ, Strand AE, Terada R, Weinberger F, Sotka EE. Invasion of novel habitats uncouples haplo‐diplontic life cycles. Mol Ecol 2016; 25:3801-16. [DOI: 10.1111/mec.13718] [Citation(s) in RCA: 63] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2015] [Revised: 03/23/2016] [Accepted: 05/20/2016] [Indexed: 01/11/2023]
Affiliation(s)
- Stacy A. Krueger‐Hadfield
- Grice Marine Laboratory College of Charleston 205 Fort Johnson Rd Charleston SC 29412 USA
- Department of Biology College of Charleston 66 George St. Charleston SC 29424 USA
| | - Nicole M. Kollars
- Grice Marine Laboratory College of Charleston 205 Fort Johnson Rd Charleston SC 29412 USA
- Department of Biology College of Charleston 66 George St. Charleston SC 29424 USA
| | - James E. Byers
- Odum School of Ecology University of Georgia 130 E. Green St. Athens GA 30602 USA
| | - Thomas W. Greig
- NOAA/National Ocean Service Center for Coastal Environmental Health and Biomolecular Research 219 Fort Johnson Rd Charleston SC 29312 USA
| | - Mareike Hammann
- GEOMAR Helmholtz‐Zentrum für Ozeanforschung Kiel Düsternbrooker Weg 20 D‐23105 Kiel Germany
| | - David C. Murray
- Grice Marine Laboratory College of Charleston 205 Fort Johnson Rd Charleston SC 29412 USA
| | - Courtney J. Murren
- Department of Biology College of Charleston 66 George St. Charleston SC 29424 USA
| | - Allan E. Strand
- Grice Marine Laboratory College of Charleston 205 Fort Johnson Rd Charleston SC 29412 USA
- Department of Biology College of Charleston 66 George St. Charleston SC 29424 USA
| | - Ryuta Terada
- Department of Fisheries Kagoshima University Shimoarata 3‐50‐20 Kagoshima City 890‐0056 Japan
| | - Florian Weinberger
- GEOMAR Helmholtz‐Zentrum für Ozeanforschung Kiel Düsternbrooker Weg 20 D‐23105 Kiel Germany
| | - Erik E. Sotka
- Grice Marine Laboratory College of Charleston 205 Fort Johnson Rd Charleston SC 29412 USA
- Department of Biology College of Charleston 66 George St. Charleston SC 29424 USA
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Krueger-Hadfield SA, Hoban SM. The importance of effective sampling for exploring the population dynamics of haploid-diploid seaweeds. JOURNAL OF PHYCOLOGY 2016; 52:1-9. [PMID: 26987084 DOI: 10.1111/jpy.12366] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/28/2015] [Accepted: 10/12/2015] [Indexed: 06/05/2023]
Abstract
The mating system partitions genetic diversity within and among populations and the links between life history traits and mating systems have been extensively studied in diploid organisms. As such most evolutionary theory is focused on species for which sexual reproduction occurs between diploid male and diploid female individuals. However, there are many multicellular organisms with biphasic life cycles in which the haploid stage is prolonged and undergoes substantial somatic development. In particular, biphasic life cycles are found across green, brown and red macroalgae. Yet, few studies have addressed the population structure and genetic diversity in both the haploid and diploid stages in these life cycles. We have developed some broad guidelines with which to develop population genetic studies of haploid-diploid macroalgae and to quantify the relationship between power and sampling strategy. We address three common goals for studying macroalgal population dynamics, including haploid-diploid ratios, genetic structure and paternity analyses.
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Affiliation(s)
- Stacy A Krueger-Hadfield
- Grice Marine Laboratory, College of Charleston, 205 Fort Johnson Rd, Charleston, South Carolina, 29412, USA
| | - Sean M Hoban
- National Institute for Mathematical and Biological Synthesis, University of Tennessee, Knoxville, Tennessee, USA
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Hu ZM, Li JJ, Sun ZM, Oak JH, Zhang J, Fresia P, Grant WS, Duan DL. Phylogeographic structure and deep lineage diversification of the red alga Chondrus ocellatus Holmes in the Northwest Pacific. Mol Ecol 2016; 24:5020-33. [PMID: 26334439 DOI: 10.1111/mec.13367] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2015] [Revised: 08/28/2015] [Accepted: 08/31/2015] [Indexed: 02/01/2023]
Abstract
A major goal of phylogeographic analysis using molecular markers is to understand the ecological and historical variables that influence genetic diversity within a species. Here, we used sequences of the mitochondrial Cox1 gene and nuclear internal transcribed spacer to reconstruct its phylogeography and demographic history of the intertidal red seaweed Chondrus ocellatus over most of its geographical range in the Northwest Pacific. We found three deeply separated lineages A, B and C, which diverged from one another in the early Pliocene-late Miocene (c. 4.5-7.7 Ma). The remarkably deep divergences, both within and between lineages, appear to have resulted from ancient isolations, accelerated by random drift and limited genetic exchange between regions. The disjunct distributions of lineages A and C along the coasts of Japan may reflect divergence during isolation in scattered refugia. The distribution of lineage B, from the South China Sea to the Korean Peninsula, appears to reflect postglacial recolonizations of coastal habitats. These three lineages do not coincide with the three documented morphological formae in C. ocellatus, suggesting that additional cryptic species may exist in this taxon. Our study illustrates the interaction of environmental variability and demographic processes in producing lineage diversification in an intertidal seaweed and highlights the importance of phylogeographic approaches for discovering cryptic marine biodiversity.
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Affiliation(s)
- Zi-Min Hu
- Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, China
| | - Jing-Jing Li
- Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, China.,College of Earth Science, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Zhong-Min Sun
- Laboratory of Marine Organism Taxonomy & Phylogeny, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, China
| | - Jung-Hyun Oak
- Department of Oceanography, Pusan National University, Pusan, 609-735, Korea
| | - Jie Zhang
- Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, China.,College of Earth Science, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Pablo Fresia
- Unidad de Bioinformática, Institut Pasteur de Montevideo, Mataojo 2020, Montevideo, Uruguay
| | - W Stewart Grant
- Alaska Department of Fish and Game, Anchorage, AK, 99518, USA
| | - De-Lin Duan
- Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, China
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Kollars NM, Krueger-Hadfield SA, Byers JE, Greig TW, Strand AE, Weinberger F, Sotka EE. Development and characterization of microsatellite loci for the haploid-diploid red seaweed Gracilaria vermiculophylla. PeerJ 2015; 3:e1159. [PMID: 26339541 PMCID: PMC4558075 DOI: 10.7717/peerj.1159] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2015] [Accepted: 07/16/2015] [Indexed: 11/20/2022] Open
Abstract
Microsatellite loci are popular molecular markers due to their resolution in distinguishing individual genotypes. However, they have rarely been used to explore the population dynamics in species with biphasic life cycles in which both haploid and diploid stages develop into independent, functional organisms. We developed microsatellite loci for the haploid-diploid red seaweed Gracilaria vermiculophylla, a widespread non-native species in coastal estuaries of the Northern hemisphere. Forty-two loci were screened for amplification and polymorphism. Nine of these loci were polymorphic across four populations of the extant range with two to eleven alleles observed. Mean observed and expected heterozygosities ranged from 0.265 to 0.527 and 0.317 to 0.387, respectively. Overall, these markers will aid in the study of the invasive history of this seaweed and further studies on the population dynamics of this important haploid-diploid primary producer.
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Affiliation(s)
- Nicole M Kollars
- Grice Marine Laboratory and the Department of Biology, College of Charleston, Charleston, SC, USA.,Current affiliation: Center for Population Biology, University of California, Davis, CA, USA
| | - Stacy A Krueger-Hadfield
- Grice Marine Laboratory and the Department of Biology, College of Charleston, Charleston, SC, USA
| | - James E Byers
- Odum School of Ecology, University of Georgia, Athens, GA, USA
| | - Thomas W Greig
- Center for Coastal Environmental Health and Biomolecular Research, National Oceanic and Atmospheric Administration, Charleston, SC, USA
| | - Allan E Strand
- Grice Marine Laboratory and the Department of Biology, College of Charleston, Charleston, SC, USA
| | | | - Erik E Sotka
- Grice Marine Laboratory and the Department of Biology, College of Charleston, Charleston, SC, USA
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Pante E, Puillandre N, Viricel A, Arnaud-Haond S, Aurelle D, Castelin M, Chenuil A, Destombe C, Forcioli D, Valero M, Viard F, Samadi S. Species are hypotheses: avoid connectivity assessments based on pillars of sand. Mol Ecol 2015; 24:525-44. [DOI: 10.1111/mec.13048] [Citation(s) in RCA: 152] [Impact Index Per Article: 16.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2014] [Revised: 12/06/2014] [Accepted: 12/13/2014] [Indexed: 01/31/2023]
Affiliation(s)
- Eric Pante
- Littoral, Environnement et Sociétés (LIENSs); UMR 7266 CNRS - Université de La Rochelle; 2 rue Olympe de Gouges 17042 La Rochelle France
| | - Nicolas Puillandre
- ISYEB - UMR 7205 - CNRS, MNHN; UPMC (University Paris 06); EPHE - Muséum national d'Histoire naturelle; Sorbonne Universités; CP26, 57 rue Cuvier F-75231 Paris Cedex 05 France
| | - Amélia Viricel
- Littoral, Environnement et Sociétés (LIENSs); UMR 7266 CNRS - Université de La Rochelle; 2 rue Olympe de Gouges 17042 La Rochelle France
| | | | - Didier Aurelle
- Aix Marseille Université; CNRS, IRD; Avignon Université, IMBE UMR 7263; 13397 Marseille France
| | - Magalie Castelin
- Aquatic Animal Health Section; Fisheries and Oceans Canada; Pacific Biological Station; 3190 Hammond Bay Road Nanaimo BC Canada V9T 6N7
| | - Anne Chenuil
- Aix Marseille Université; CNRS, IRD; Avignon Université, IMBE UMR 7263; 13397 Marseille France
| | - Christophe Destombe
- Sorbonne Universités; UPMC; University Paris 06; Station Biologique de Roscoff F-29680 Roscoff France
- CNRS, Laboratory Evolutionary Biology and Ecology of Algae; Sorbonne Universités; Université Pierre et Marie Curie (UPMC) Univ Paris 06, UMI 3614, UPMC, PUCCh, UACh; Station Biologique de Roscoff F-29680 Roscoff France
| | - Didier Forcioli
- Faculté des Sciences; Université Nice-Sophia-Antipolis, Equipe Symbiose Marine UMR 7138; Parc Valrose 06108 Nice Cedex 2 France
- UMR 7138 Evolution Paris Seine; Université Pierre et Marie Curie - CNRS; 7 Quai St Bernard 75252 Paris Cedex 05 France
| | - Myriam Valero
- Sorbonne Universités; UPMC; University Paris 06; Station Biologique de Roscoff F-29680 Roscoff France
- CNRS, Laboratory Evolutionary Biology and Ecology of Algae; Sorbonne Universités; Université Pierre et Marie Curie (UPMC) Univ Paris 06, UMI 3614, UPMC, PUCCh, UACh; Station Biologique de Roscoff F-29680 Roscoff France
| | - Frédérique Viard
- Sorbonne Universités; UPMC; University Paris 06; Station Biologique de Roscoff F-29680 Roscoff France
- Centre National de la Recherche Scientifique (CNRS); Laboratory Adaptation and Diversity in the Marine Environment; Team Diversity and Connectivity in Coastal Marine Landscapes, UMR 7144; Station Biologique de Roscoff F-29680 Roscoff France
| | - Sarah Samadi
- ISYEB - UMR 7205 - CNRS, MNHN; UPMC (University Paris 06); EPHE - Muséum national d'Histoire naturelle; Sorbonne Universités; CP26, 57 rue Cuvier F-75231 Paris Cedex 05 France
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Tracing the trans-pacific evolutionary history of a domesticated Seaweed (Gracilaria chilensis) with archaeological and genetic data. PLoS One 2014; 9:e114039. [PMID: 25501717 PMCID: PMC4263469 DOI: 10.1371/journal.pone.0114039] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2014] [Accepted: 11/03/2014] [Indexed: 11/22/2022] Open
Abstract
The history of a domesticated marine macroalga is studied using archaeological, phylogeographic and population genetic tools. Phylogeographic and population genetic analyses demonstrated that the cultivated red alga Gracilaria chilensis colonised the Chilean coast from New Zealand. Combining archaeological observations with phylogeographic data provided evidence that exchanges between New Zealand and Chile have occurred at least before the Holocene, likely at the end of the Last Glacial Maximum (LGM) and we suggest that migration probably occurred via rafting. Furthermore, the remarkably low microsatellite diversity found in the Chilean populations compared to those in New Zealand is consistent with a recent genetic bottleneck as a result of over-exploitation of natural populations and/or the process of domestication. Therefore, the aquaculture of this seaweed, based essentially on clonal propagation, is occurring from genetically depressed populations and may be driving the species to an extinction vortex in Chile.
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O father where art thou? Paternity analyses in a natural population of the haploid-diploid seaweed Chondrus crispus. Heredity (Edinb) 2014; 114:185-94. [PMID: 25227258 DOI: 10.1038/hdy.2014.82] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2013] [Revised: 08/11/2014] [Accepted: 08/11/2014] [Indexed: 02/03/2023] Open
Abstract
The link between life history traits and mating systems in diploid organisms has been extensively addressed in the literature, whereas the degree of selfing and/or inbreeding in natural populations of haploid-diploid organisms, in which haploid gametophytes alternate with diploid sporophytes, has been rarely measured. Dioecy has often been used as a proxy for the mating system in these organisms. Yet, dioecy does not prevent the fusion of gametes from male and female gametophytes originating from the same sporophyte. This is likely a common occurrence when spores from the same parent are dispersed in clumps and recruit together. This pattern of clumped spore dispersal has been hypothesized to explain significant heterozygote deficiency in the dioecious haploid-diploid seaweed Chondrus crispus. Fronds and cystocarps (structures in which zygotes are mitotically amplified) were sampled in two 25 m(2) plots located within a high and a low intertidal zone and genotyped at 5 polymorphic microsatellite loci in order to explore the mating system directly using paternity analyses. Multiple males sired cystocarps on each female, but only one of the 423 paternal genotypes corresponded to a field-sampled gametophyte. Nevertheless, larger kinship coefficients were detected between males siring cystocarps on the same female in comparison with males in the entire population, confirming restricted spermatial and clumped spore dispersal. Such dispersal mechanisms may be a mode of reproductive assurance due to nonmotile gametes associated with putatively reduced effects of inbreeding depression because of the free-living haploid stage in C. crispus.
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Krueger-Hadfield SA, Roze D, Mauger S, Valero M. Intergametophytic selfing and microgeographic genetic structure shape populations of the intertidal red seaweedChondrus crispus. Mol Ecol 2013; 22:3242-60. [DOI: 10.1111/mec.12191] [Citation(s) in RCA: 54] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2012] [Revised: 11/27/2012] [Accepted: 11/29/2012] [Indexed: 12/28/2022]
Affiliation(s)
- S. A. Krueger-Hadfield
- UPMC Univ Paris 06; UMR7144; Adaptation et Diversité en Milieu Marin; Station Biologique de Roscoff; Place Georges Teissier 29682 Roscoff France
- CNRS; UMR7144; Adaptation et Diversité en Milieu Marin; Station Biologique de Roscoff; Place Georges Teissier 29682 Roscoff France
- Departamento de Ecología; Facultad de Ciencias Biológicas; Center for Advanced Studies in Ecology and Biodiversity; Pontificia Universidad Católica de Chile; 6513677 Santiago Chile
| | - D. Roze
- UPMC Univ Paris 06; UMR7144; Adaptation et Diversité en Milieu Marin; Station Biologique de Roscoff; Place Georges Teissier 29682 Roscoff France
- CNRS; UMR7144; Adaptation et Diversité en Milieu Marin; Station Biologique de Roscoff; Place Georges Teissier 29682 Roscoff France
| | - S. Mauger
- UPMC Univ Paris 06; UMR7144; Adaptation et Diversité en Milieu Marin; Station Biologique de Roscoff; Place Georges Teissier 29682 Roscoff France
- CNRS; UMR7144; Adaptation et Diversité en Milieu Marin; Station Biologique de Roscoff; Place Georges Teissier 29682 Roscoff France
| | - M. Valero
- UPMC Univ Paris 06; UMR7144; Adaptation et Diversité en Milieu Marin; Station Biologique de Roscoff; Place Georges Teissier 29682 Roscoff France
- CNRS; UMR7144; Adaptation et Diversité en Milieu Marin; Station Biologique de Roscoff; Place Georges Teissier 29682 Roscoff France
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