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Graham LA, Hansen T, Yang Y, Sherik M, Ye Q, Soares BP, Kinrade B, Guo S, Davies PL. Adhesin domains responsible for binding bacteria to surfaces they colonize project outwards from companion split domains. Proteins 2024; 92:933-945. [PMID: 38591850 DOI: 10.1002/prot.26689] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2024] [Revised: 03/07/2024] [Accepted: 03/26/2024] [Indexed: 04/10/2024]
Abstract
Bacterial adhesins attach their hosts to surfaces that the bacteria will colonize. This surface adhesion occurs through specific ligand-binding domains located towards the distal end of the long adhesin molecules. However, recognizing which of the many adhesin domains are structural and which are ligand binding has been difficult up to now. Here we have used the protein structure modeling program AlphaFold2 to predict structures for these giant 0.2- to 1.5-megadalton proteins. Crystal structures previously solved for several adhesin regions are in good agreement with the models. Whereas most adhesin domains are linked in a linear fashion through their N- and C-terminal ends, ligand-binding domains can be recognized by budding out from a companion core domain so that their ligand-binding sites are projected away from the axis of the adhesin for maximal exposure to their targets. These companion domains are "split" in their continuity by projecting the ligand-binding domain outwards. The "split domains" are mostly β-sandwich extender modules, but other domains like a β-solenoid can serve the same function. Bioinformatic analyses of Gram-negative bacterial sequences revealed wide variety ligand-binding domains are used in their Repeats-in-Toxin adhesins. The ligands for many of these domains have yet to be identified but known ligands include various cell-surface glycans, proteins, and even ice. Recognizing the ligands to which the adhesins bind could lead to ways of blocking colonization by bacterial pathogens. Engineering different ligand-binding domains into an adhesin has the potential to change the surfaces to which bacteria bind.
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Affiliation(s)
- Laurie A Graham
- Department of Biomedical and Molecular Sciences, Queen's University, Kingston, Ontario, Canada
| | - Thomas Hansen
- Department of Biomedical and Molecular Sciences, Queen's University, Kingston, Ontario, Canada
| | - Yanzhi Yang
- Department of Biomedical and Molecular Sciences, Queen's University, Kingston, Ontario, Canada
| | - Mustafa Sherik
- Department of Biomedical and Molecular Sciences, Queen's University, Kingston, Ontario, Canada
| | - Qilu Ye
- Department of Biomedical and Molecular Sciences, Queen's University, Kingston, Ontario, Canada
| | - Blake P Soares
- Department of Biomedical and Molecular Sciences, Queen's University, Kingston, Ontario, Canada
| | - Brett Kinrade
- Department of Biomedical and Molecular Sciences, Queen's University, Kingston, Ontario, Canada
| | - Shuaiqi Guo
- Department of Anatomy and Cell Biology, McGill University, Montreal, Quebec, Canada
| | - Peter L Davies
- Department of Biomedical and Molecular Sciences, Queen's University, Kingston, Ontario, Canada
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Mafune KK, Kasson MT, Winkler MKH. Building blocks toward sustainable biofertilizers: variation in arbuscular mycorrhizal spore germination when immobilized with diazotrophic bacteria in biodegradable hydrogel beads. J Appl Microbiol 2024; 135:lxae167. [PMID: 38960411 DOI: 10.1093/jambio/lxae167] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2024] [Revised: 06/18/2024] [Accepted: 07/02/2024] [Indexed: 07/05/2024]
Abstract
AIM We investigated whether there was interspecies and intraspecies variation in spore germination of 12 strains of arbuscular mycorrhizal fungi when co-entrapped with the diazotrophic plant growth-promoting bacteria, Azospirillum brasilense Sp7 in alginate hydrogel beads. METHODS AND RESULTS Twelve Rhizophagus irregularis, Rhizophagus intraradices, and Funneliformis mosseae strains were separately combined with a live culture of Azospirillum brasilense Sp7. Each fungal-bacterial consortia was supplemented with sodium alginate to a 2% concentration (v/v) and cross-linked in calcium chloride (2% w/v) to form biodegradable hydrogel beads. One hundred beads from each combination (total of 1200) were fixed in solidified modified Strullu and Romand media. Beads were observed for successful spore germination and bacterial growth over 14 days. In all cases, successful growth of A. brasilense was observed. For arbuscular mycorrhizal fungi, interspecies variation in spore germination was observed, with R. intraradices having the highest germination rate (64.3%), followed by R. irregularis (45.5%) and F. mosseae (40.3%). However, a difference in intraspecies germination was only observed among strains of R. irregularis and F. mosseae. Despite having varying levels of germination, even the strains with the lowest potential were still able to establish with the plant host Brachypodium distachyon in a model system. CONCLUSIONS Arbuscular mycorrhizal spore germination varied across strains when co-entrapped with a diazotrophic plant growth-promoting bacteria. This demonstrates that hydrogel beads containing a mixed consortium hold potential as a sustainable biofertilizer and that compatibility tests remain an important building block when aiming to create a hydrogel biofertilizer that encases a diversity of bacteria and fungi. Moving forward, further studies should be conducted to test the efficacy of these hydrogel biofertilizers on different crops across varying climatic conditions in order to optimize their potential.
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Affiliation(s)
- Korena K Mafune
- Department of Civil and Environmental Engineering, University of Washington, Seattle, WA 98105, United States
| | - Matt T Kasson
- Division of Plant and Soil Sciences, West Virginia University, Morgantown, WV 26506, United States
| | - Mari-Karoliina H Winkler
- Department of Civil and Environmental Engineering, University of Washington, Seattle, WA 98105, United States
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Nakai R, Kusada H, Sassa F, Makino A, Morigasaki S, Hayashi H, Takaya N, Tamaki H. Roseiterribacter gracilis gen. nov., sp. nov., a novel filterable alphaproteobacterium isolated from soil using a gel-filled microwell array device. PLoS One 2024; 19:e0304366. [PMID: 38857291 PMCID: PMC11164329 DOI: 10.1371/journal.pone.0304366] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2023] [Accepted: 05/11/2024] [Indexed: 06/12/2024] Open
Abstract
Our previous studies indicate the abundant and diverse presence of yet-to-be-cultured microorganisms in the micropore-filtered fractions of various environmental samples. Here, we isolated a novel bacterium (designated as strain TMPK1T) from a 0.45-μm-filtered soil suspension by using a gel-filled microwell array device comprising 900 microwells and characterized its phylogenetic and physiological features. This strain showed low 16S rRNA gene sequence identities (<91%) and low average nucleotide identity values (<70%) to the closest validly described species, and belonged to a novel-family-level lineage within the order Rhodospirillales of Alphaproteobacteria. Strain TMPK1T exhibited small cell sizes (0.08-0.23 μm3) and had a high cyclopropane fatty acid content (>13%), and these characteristics were differentiated from other Rhodospirillales bacteria. A comprehensive habitability search using amplicon datasets suggested that TMPK1T and its close relatives are mainly distributed in soil and plant-associated environments. Based on these results, we propose that strain TMPK1T represents a novel genus and species named Roseiterribacter gracilis gen. nov., sp. nov. (JCM 34627T = KCTC 82790T). We also propose Roseiterribacteraceae fam. nov. to accommodate the genus Roseiterribacter.
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Affiliation(s)
- Ryosuke Nakai
- Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Sapporo, Hokkaido, Japan
| | - Hiroyuki Kusada
- Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Ibaraki, Japan
| | - Fumihiro Sassa
- Department of Electronics, Graduate School of Information Science and Electrical Engineering, Kyushu University, Fukuoka, Japan
| | - Ayaka Makino
- Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Sapporo, Hokkaido, Japan
| | - Susumu Morigasaki
- Institute of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan
| | - Hisayoshi Hayashi
- Institute of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan
| | - Naoki Takaya
- Institute of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan
- Microbiology Research Center for Sustainability, University of Tsukuba, Tsukuba, Ibaraki, Japan
| | - Hideyuki Tamaki
- Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Ibaraki, Japan
- Institute of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan
- Microbiology Research Center for Sustainability, University of Tsukuba, Tsukuba, Ibaraki, Japan
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Greipel E, Nagy K, Csákvári E, Dér L, Galajda P, Kutasi J. Chemotactic Interactions of Scenedesmus sp. and Azospirillum brasilense Investigated by Microfluidic Methods. MICROBIAL ECOLOGY 2024; 87:52. [PMID: 38498218 PMCID: PMC10948495 DOI: 10.1007/s00248-024-02366-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2023] [Accepted: 03/08/2024] [Indexed: 03/20/2024]
Abstract
The use of algae for industrial, biotechnological, and agricultural purposes is spreading globally. Scenedesmus species can play an essential role in the food industry and agriculture due to their favorable nutrient content and plant-stimulating properties. Previous research and the development of Scenedesmus-based foliar fertilizers raised several questions about the effectiveness of large-scale algal cultivation and the potential effects of algae on associative rhizobacteria. In the microbiological practice applied in agriculture, bacteria from the genus Azospirillum are one of the most studied plant growth-promoting, associative, nitrogen-fixing bacteria. Co-cultivation with Azospirillum species may be a new way of optimizing Scenedesmus culturing, but the functioning of the co-culture system still needs to be fully understood. It is known that Azospirillum brasilense can produce indole-3-acetic acid, which could stimulate algae growth as a plant hormone. However, the effect of microalgae on Azospirillum bacteria is unclear. In this study, we investigated the behavior of Azospirillum brasilense bacteria in the vicinity of Scenedesmus sp. or its supernatant using a microfluidic device consisting of physically separated but chemically coupled microchambers. Following the spatial distribution of bacteria within the device, we detected a positive chemotactic response toward the microalgae culture. To identify the metabolites responsible for this behavior, we tested the chemoeffector potential of citric acid and oxaloacetic acid, which, according to our HPLC analysis, were present in the algae supernatant in 0.074 mg/ml and 0.116 mg/ml concentrations, respectively. We found that oxaloacetic acid acts as a chemoattractant for Azospirillum brasilense.
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Affiliation(s)
- Erika Greipel
- Albitech Biotechnological Ltd, Berlini Út 47-49, 1045, Budapest, Hungary
- Department of Plant Anatomy, ELTE Eötvös Loránd University, Pázmány Péter Stny 1/C, H-1117, Budapest, Hungary
| | - Krisztina Nagy
- Institute of Biophysics, HUN-REN Biological Research Centre, Szeged, Temesvári Krt. 62, 6726, Szeged, Hungary.
| | - Eszter Csákvári
- Institute of Biophysics, HUN-REN Biological Research Centre, Szeged, Temesvári Krt. 62, 6726, Szeged, Hungary
- Division for Biotechnology, Bay Zoltán Nonprofit Ltd. for Applied Research, Derkovits Fasor 2, 6726, Szeged, Hungary
| | - László Dér
- Institute of Biophysics, HUN-REN Biological Research Centre, Szeged, Temesvári Krt. 62, 6726, Szeged, Hungary
| | - Peter Galajda
- Institute of Biophysics, HUN-REN Biological Research Centre, Szeged, Temesvári Krt. 62, 6726, Szeged, Hungary
| | - József Kutasi
- Albitech Biotechnological Ltd, Berlini Út 47-49, 1045, Budapest, Hungary
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Garciglia-Mercado C, Contreras CA, Choix FJ, de-Bashan LE, Gómez-Anduro GA, Palacios OA. Metabolic and physiological adaptations of microalgal growth-promoting bacterium Azospirillum brasilense growing under biogas atmosphere: a microarray-based transcriptome analysis. Arch Microbiol 2024; 206:173. [PMID: 38492040 DOI: 10.1007/s00203-024-03890-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2023] [Revised: 01/30/2024] [Accepted: 02/08/2024] [Indexed: 03/18/2024]
Abstract
Using microalgal growth-promoting bacteria (MGPB) to improve the cultured microalga metabolism during biotechnological processes is one of the most promising strategies to enhance their benefits. Nonetheless, the culture condition effect used during the biotechnological process on MGPB growth and metabolism is key to ensure the expected positive bacterium growth and metabolism of microalgae. In this sense, the present research study investigated the effect of the synthetic biogas atmosphere (75% CH4-25% CO2) on metabolic and physiological adaptations of the MGPB Azospirillum brasilense by a microarray-based transcriptome approach. A total of 394 A. brasilense differentially expressed genes (DEGs) were found: 201 DEGs (34 upregulated and 167 downregulated) at 24 h and 193 DEGs (140 upregulated and 53 downregulated) under the same conditions at 72 h. The results showed a series of A. brasilense genes regulating processes that could be essential for its adaptation to the early stressful condition generated by biogas. Evidence of energy production is shown by nitrate/nitrite reduction and activation of the hypothetical first steps of hydrogenotrophic methanogenesis; signal molecule modulation is observed: indole-3-acetic acid (IAA), riboflavin, and vitamin B6, activation of Type VI secretion system responding to IAA exposure, as well as polyhydroxybutyrate (PHB) biosynthesis and accumulation. Moreover, an overexpression of ipdC, ribB, and phaC genes, encoding the key enzymes for the production of the signal molecule IAA, vitamin riboflavin, and PHB production of 2, 1.5 and 11 folds, respectively, was observed at the first 24 h of incubation under biogas atmosphere Overall, the ability of A. brasilense to metabolically adapt to a biogas atmosphere is demonstrated, which allows its implementation for generating biogas with high calorific values and the use of renewable energies through microalga biotechnologies.
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Affiliation(s)
| | - Claudia A Contreras
- Facultad de Ciencias Químicas, Universidad Autónoma de Chihuahua, Chihuahua, Mexico
| | - Francisco J Choix
- Facultad de Ciencias Químicas, Universidad Autónoma de Chihuahua, Chihuahua, Mexico
- CONAHCYT-Universidad Autónoma de Chihuahua, Chihuahua, Mexico
| | - Luz E de-Bashan
- The Bashan Institute of Science, Auburn, AL, USA
- Departament of Entomology and Plant Pathology, Auburn University, Auburn, AL, USA
| | | | - Oskar A Palacios
- Facultad de Ciencias Químicas, Universidad Autónoma de Chihuahua, Chihuahua, Mexico.
- The Bashan Institute of Science, Auburn, AL, USA.
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Aguilar-Carrillo Y, Soto-Urzúa L, Martínez-Martínez MDLÁ, Becerril-Ramírez M, Martínez-Morales LJ. Computational Analysis of the Tripartite Interaction of Phasins (PhaP4 and 5)-Sigma Factor (σ 24)-DNA of Azospirillum brasilense Sp7. Polymers (Basel) 2024; 16:611. [PMID: 38475295 DOI: 10.3390/polym16050611] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2023] [Revised: 02/04/2024] [Accepted: 02/07/2024] [Indexed: 03/14/2024] Open
Abstract
Azospirillum brasilense Sp7 produces PHB, which is covered by granule-associated proteins (GAPs). Phasins are the main GAPs. Previous studies have shown phasins can regulate PHB synthesis. When A. brasilense grows under stress conditions, it uses sigma factors to transcribe genes for survival. One of these factors is the σ24 factor. This study determined the possible interaction between phasins and the σ24 factor or phasin-σ24 factor complex and DNA. Three-dimensional structures of phasins and σ24 factor structures were predicted using the I-TASSER and SWISS-Model servers, respectively. Subsequently, a molecular docking between phasins and the σ24 factor was performed using the ClusPro 2.0 server, followed by molecular docking between protein complexes and DNA using the HDOCK server. Evaluation of the types of ligand-receptor interactions was performed using the BIOVIA Discovery Visualizer for three-dimensional diagrams, as well as the LigPlot server to obtain bi-dimensional diagrams. The results showed the phasins (Pha4Abs7 or Pha5Abs7)-σ24 factor complex was bound near the -35 box of the promoter region of the phaC gene. However, in the individual interaction of PhaP5Abs7 and the σ24 factor, with DNA, both proteins were bound to the -35 box. This did not occur with PhaP4Abs7, which was bound to the -10 box. This change could affect the transcription level of the phaC gene and possibly affect PHB synthesis.
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Affiliation(s)
- Yovani Aguilar-Carrillo
- Centro de Investigaciones en Ciencias Microbiológicas, Instituto de Ciencias, Benemérita Universidad Autónoma de Puebla, Av. San Claudio y Av. 24 Sur, Col. San Manuel Ciudad Universitaria, Puebla 72570, Mexico
| | - Lucía Soto-Urzúa
- Centro de Investigaciones en Ciencias Microbiológicas, Instituto de Ciencias, Benemérita Universidad Autónoma de Puebla, Av. San Claudio y Av. 24 Sur, Col. San Manuel Ciudad Universitaria, Puebla 72570, Mexico
| | - María De Los Ángeles Martínez-Martínez
- Centro de Investigaciones en Ciencias Microbiológicas, Instituto de Ciencias, Benemérita Universidad Autónoma de Puebla, Av. San Claudio y Av. 24 Sur, Col. San Manuel Ciudad Universitaria, Puebla 72570, Mexico
| | - Mirian Becerril-Ramírez
- Centro de Investigaciones en Ciencias Microbiológicas, Instituto de Ciencias, Benemérita Universidad Autónoma de Puebla, Av. San Claudio y Av. 24 Sur, Col. San Manuel Ciudad Universitaria, Puebla 72570, Mexico
| | - Luis Javier Martínez-Morales
- Centro de Investigaciones en Ciencias Microbiológicas, Instituto de Ciencias, Benemérita Universidad Autónoma de Puebla, Av. San Claudio y Av. 24 Sur, Col. San Manuel Ciudad Universitaria, Puebla 72570, Mexico
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Li Y, Chen Y, Fu Y, Shao J, Liu Y, Xuan W, Xu G, Zhang R. Signal communication during microbial modulation of root system architecture. JOURNAL OF EXPERIMENTAL BOTANY 2024; 75:526-537. [PMID: 37419655 DOI: 10.1093/jxb/erad263] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/24/2023] [Accepted: 07/06/2023] [Indexed: 07/09/2023]
Abstract
Every living organism on Earth depends on its interactions with other organisms. In the rhizosphere, plants and microorganisms constantly exchange signals and influence each other's behavior. Recent studies have shown that many beneficial rhizosphere microbes can produce specific signaling molecules that affect plant root architecture and therefore could have substantial effects on above-ground growth. This review examines these chemical signals and summarizes their mechanisms of action, with the aim of enhancing our understanding of plant-microbe interactions and providing references for the comprehensive development and utilization of these active components in agricultural production. In addition, we highlight future research directions and challenges, such as searching for microbial signals to induce primary root development.
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Affiliation(s)
- Yucong Li
- Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing Agricultural University, Nanjing 210095, China
- College of Environment and Ecology, Jiangsu Open University, Nanjing 210017, China
| | - Yu Chen
- Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing Agricultural University, Nanjing 210095, China
| | - Yansong Fu
- Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing Agricultural University, Nanjing 210095, China
| | - Jiahui Shao
- Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing Agricultural University, Nanjing 210095, China
| | - Yunpeng Liu
- State Key Laboratory of Efficient Utilization of Arid and Semi-arid Arable Land in Northern China, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Wei Xuan
- State Key Laboratory of Crop Genetics and Germplasm Enhancement and MOA Key Laboratory of Plant Nutrition and Fertilization in Lower-Middle Reaches of the Yangtze River, Nanjing Agricultural University, Nanjing 210095, China
| | - Guohua Xu
- State Key Laboratory of Crop Genetics and Germplasm Enhancement and MOA Key Laboratory of Plant Nutrition and Fertilization in Lower-Middle Reaches of the Yangtze River, Nanjing Agricultural University, Nanjing 210095, China
| | - Ruifu Zhang
- Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing Agricultural University, Nanjing 210095, China
- State Key Laboratory of Efficient Utilization of Arid and Semi-arid Arable Land in Northern China, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing 100081, China
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Brescia F, Sillo F, Franchi E, Pietrini I, Montesano V, Marino G, Haworth M, Zampieri E, Fusini D, Schillaci M, Papa R, Santamarina C, Vita F, Chitarra W, Nerva L, Petruzzelli G, Mennone C, Centritto M, Balestrini R. The 'microbiome counterattack': Insights on the soil and root-associated microbiome in diverse chickpea and lentil genotypes after an erratic rainfall event. ENVIRONMENTAL MICROBIOLOGY REPORTS 2023; 15:459-483. [PMID: 37226644 PMCID: PMC10667653 DOI: 10.1111/1758-2229.13167] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2023] [Accepted: 05/05/2023] [Indexed: 05/26/2023]
Abstract
Legumes maintain soil fertility thanks to their associated microbiota but are threatened by climate change that causes soil microbial community structural and functional modifications. The core microbiome associated with different chickpea and lentil genotypes was described after an unexpected climatic event. Results showed that chickpea and lentil bulk soil microbiomes varied significantly between two sampling time points, the first immediately after the rainfall and the second 2 weeks later. Rhizobia were associated with the soil of the more productive chickpea genotypes in terms of flower and fruit number. The root-associated bacteria and fungi were surveyed in lentil genotypes, considering that several parcels showed disease symptoms. The metabarcoding analysis revealed that reads related to fungal pathogens were significantly associated with one lentil genotype. A lentil core prokaryotic community common to all genotypes was identified as well as a genotype-specific one. A higher number of specific bacterial taxa and an enhanced tolerance to fungal diseases characterized a lentil landrace compared to the commercial varieties. This outcome supported the hypothesis that locally adapted landraces might have a high recruiting efficiency of beneficial soil microbes.
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Affiliation(s)
- Francesca Brescia
- Institute for Sustainable Plant ProtectionNational Research Council of ItalyTurinItaly
| | - Fabiano Sillo
- Institute for Sustainable Plant ProtectionNational Research Council of ItalyTurinItaly
| | - Elisabetta Franchi
- Eni S.p.A.R&D Environmental & Biological LaboratoriesSan Donato MilaneseItaly
| | - Ilaria Pietrini
- Eni S.p.A.R&D Environmental & Biological LaboratoriesSan Donato MilaneseItaly
| | - Vincenzo Montesano
- Institute for Sustainable Plant ProtectionNational Research Council of ItalyBernalda (MT)Italy
| | - Giovanni Marino
- Institute for Sustainable Plant ProtectionNational Research Council of ItalySesto FiorentinoItaly
| | - Matthew Haworth
- Institute for Sustainable Plant ProtectionNational Research Council of ItalySesto FiorentinoItaly
| | - Elisa Zampieri
- Institute for Sustainable Plant ProtectionNational Research Council of ItalyTurinItaly
| | - Danilo Fusini
- Eni S.p.A.R&D Environmental & Biological LaboratoriesSan Donato MilaneseItaly
| | - Martino Schillaci
- Institute for Sustainable Plant ProtectionNational Research Council of ItalyTurinItaly
| | - Roberto Papa
- Department of Agricultural, Food and Environmental SciencesPolytechnic University of MarcheAnconaItaly
| | - Chiara Santamarina
- Department of Agricultural, Food and Environmental SciencesPolytechnic University of MarcheAnconaItaly
| | - Federico Vita
- Department of Bioscience, Biotechnology and EnvironmentUniversity of Bari Aldo MoroBariItaly
| | - Walter Chitarra
- Research Centre for Viticulture and EnologyCouncil for Agricultural Research and EconomicsConeglianoItaly
| | - Luca Nerva
- Research Centre for Viticulture and EnologyCouncil for Agricultural Research and EconomicsConeglianoItaly
| | | | - Carmelo Mennone
- Azienda Pantanello, ALSIA Research Center Metapontum AgrobiosBernalda (MT)Italy
| | - Mauro Centritto
- Institute for Sustainable Plant ProtectionNational Research Council of ItalySesto FiorentinoItaly
- ENI‐CNR Water Research Center ‘Hypatia of Alexandria’ALSIA Research Center Metapontum AgrobiosBernaldaItaly
| | - Raffaella Balestrini
- Institute for Sustainable Plant ProtectionNational Research Council of ItalyTurinItaly
- ENI‐CNR Water Research Center ‘Hypatia of Alexandria’ALSIA Research Center Metapontum AgrobiosBernaldaItaly
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9
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Zhao H, Sun N, Huang L, Qian R, Lin X, Sun C, Zhu Y. Azospirillum brasilense activates peroxidase-mediated cell wall modification to inhibit root cell elongation. iScience 2023; 26:107144. [PMID: 37534167 PMCID: PMC10391928 DOI: 10.1016/j.isci.2023.107144] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Revised: 05/24/2023] [Accepted: 06/12/2023] [Indexed: 08/04/2023] Open
Abstract
The molecular mechanism of beneficial bacterium Azospirillum brasilense-mediated root developmental remain elusive. A. brasilense elicited extensively transcriptional changes but inhibited primary root elongation in Arabidopsis. By analyzing root cell type-specific developmental markers, we demonstrated that A. brasilense affected neither overall organization nor cell division of primary root meristem. The cessation of primary root resulted from reduction of cell elongation, which is probably because of bacterially activated peroxidase that will lead to cell wall cross-linking at consuming of H2O2. The activated peroxidase combined with downregulated cell wall loosening enzymes consequently led to cell wall thickness, whereas inhibiting peroxidase restored root growth under A. brasilense inoculation. We further showed that peroxidase activity was probably promoted by cadaverine secreted by A. brasilense. These results suggest that A. brasilense inhibits root elongation by activating peroxidase and inducing cell wall modification in Arabidopsis, in which cadaverine released by A. brasilense is a potential signal compound.
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Affiliation(s)
- Hongcheng Zhao
- MOE Key Laboratory of Environment Remediation and Ecological Health, College of Natural Resource & Environmental Sciences, Zhejiang University, Hangzhou 310058, China
| | - Nan Sun
- MOE Key Laboratory of Environment Remediation and Ecological Health, College of Natural Resource & Environmental Sciences, Zhejiang University, Hangzhou 310058, China
| | - Lin Huang
- MOE Key Laboratory of Environment Remediation and Ecological Health, College of Natural Resource & Environmental Sciences, Zhejiang University, Hangzhou 310058, China
| | - Ruyi Qian
- MOE Key Laboratory of Environment Remediation and Ecological Health, College of Natural Resource & Environmental Sciences, Zhejiang University, Hangzhou 310058, China
| | - Xianyong Lin
- MOE Key Laboratory of Environment Remediation and Ecological Health, College of Natural Resource & Environmental Sciences, Zhejiang University, Hangzhou 310058, China
| | - Chengliang Sun
- MOE Key Laboratory of Environment Remediation and Ecological Health, College of Natural Resource & Environmental Sciences, Zhejiang University, Hangzhou 310058, China
| | - Yongguan Zhu
- MOE Key Laboratory of Environment Remediation and Ecological Health, College of Natural Resource & Environmental Sciences, Zhejiang University, Hangzhou 310058, China
- Key Lab of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, PR China
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10
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Martínez MDLÁM, Urzúa LS, Carrillo YA, Ramírez MB, Morales LJM. Polyhydroxybutyrate Metabolism in Azospirillum brasilense and Its Applications, a Review. Polymers (Basel) 2023; 15:3027. [PMID: 37514417 PMCID: PMC10383645 DOI: 10.3390/polym15143027] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2023] [Revised: 06/28/2023] [Accepted: 07/06/2023] [Indexed: 07/30/2023] Open
Abstract
Gram-negative Azospirillum brasilense accumulates approximately 80% of polyhydroxybutyrate (PHB) as dry cell weight. For this reason, this bacterium has been characterized as one of the main microorganisms that produce PHB. PHB is synthesized inside bacteria by the polymerization of 3-hydroxybutyrate monomers. In this review, we are focusing on the analysis of the PHB production by A. brasilense in order to understand the metabolism during PHB accumulation. First, the carbon and nitrogen sources used to improve PHB accumulation are discussed. A. brasilense accumulates more PHB when it is grown on a minimal medium containing a high C/N ratio, mainly from malate and ammonia chloride, respectively. The metabolic pathways to accumulate and mobilize PHB in A. brasilense are mentioned and compared with those of other microorganisms. Next, we summarize the available information to understand the role of the genes involved in the regulation of PHB metabolism as well as the role of PHB in the physiology of Azospirillum. Finally, we made a comparison between the properties of PHB and polypropylene, and we discussed some applications of PHB in biomedical and commercial areas.
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Affiliation(s)
- María de Los Ángeles Martínez Martínez
- Centro de Investigaciones en Ciencias Microbiológicas, Instituto de Ciencias, Benemérita Universidad Autónoma de Puebla, Av. San Claudio y Av. 24 Sur, Col. San Manuel Ciudad Universitaria, Puebla 72570, Mexico
| | - Lucía Soto Urzúa
- Centro de Investigaciones en Ciencias Microbiológicas, Instituto de Ciencias, Benemérita Universidad Autónoma de Puebla, Av. San Claudio y Av. 24 Sur, Col. San Manuel Ciudad Universitaria, Puebla 72570, Mexico
| | - Yovani Aguilar Carrillo
- Centro de Investigaciones en Ciencias Microbiológicas, Instituto de Ciencias, Benemérita Universidad Autónoma de Puebla, Av. San Claudio y Av. 24 Sur, Col. San Manuel Ciudad Universitaria, Puebla 72570, Mexico
| | - Mirian Becerril Ramírez
- Centro de Investigaciones en Ciencias Microbiológicas, Instituto de Ciencias, Benemérita Universidad Autónoma de Puebla, Av. San Claudio y Av. 24 Sur, Col. San Manuel Ciudad Universitaria, Puebla 72570, Mexico
| | - Luis Javier Martínez Morales
- Centro de Investigaciones en Ciencias Microbiológicas, Instituto de Ciencias, Benemérita Universidad Autónoma de Puebla, Av. San Claudio y Av. 24 Sur, Col. San Manuel Ciudad Universitaria, Puebla 72570, Mexico
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11
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Gureeva MV, Gureev AP. Molecular Mechanisms Determining the Role of Bacteria from the Genus Azospirillum in Plant Adaptation to Damaging Environmental Factors. Int J Mol Sci 2023; 24:ijms24119122. [PMID: 37298073 DOI: 10.3390/ijms24119122] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2023] [Revised: 05/19/2023] [Accepted: 05/22/2023] [Indexed: 06/12/2023] Open
Abstract
Agricultural plants are continuously exposed to environmental stressors, which can lead to a significant reduction in yield and even the death of plants. One of the ways to mitigate stress impacts is the inoculation of plant growth-promoting rhizobacteria (PGPR), including bacteria from the genus Azospirillum, into the rhizosphere of plants. Different representatives of this genus have different sensitivities or resistances to osmotic stress, pesticides, heavy metals, hydrocarbons, and perchlorate and also have the ability to mitigate the consequences of such stresses for plants. Bacteria from the genus Azospirillum contribute to the bioremediation of polluted soils and induce systemic resistance and have a positive effect on plants under stress by synthesizing siderophores and polysaccharides and modulating the levels of phytohormones, osmolytes, and volatile organic compounds in plants, as well as altering the efficiency of photosynthesis and the antioxidant defense system. In this review, we focus on molecular genetic features that provide bacterial resistance to various stress factors as well as on Azospirillum-related pathways for increasing plant resistance to unfavorable anthropogenic and natural factors.
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Affiliation(s)
- Maria V Gureeva
- Department of Biochemistry and Cell Physiology, Voronezh State University, 394018 Voronezh, Russia
| | - Artem P Gureev
- Department of Biochemistry and Cell Physiology, Voronezh State University, 394018 Voronezh, Russia
- Department of Genetics, Cytology and Bioengineering, Voronezh State University, 394018 Voronezh, Russia
- Laboratory of Metagenomics and Food Biotechnology, Voronezh State University of Engineering Technology, 394036 Voronezh, Russia
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12
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Soares DDA, Modesto VC, Nakao AH, Soares WR, Freitas LA, Dickmann L, Pascoaloto IM, Andreotti M. Soybean Yield and Nutrition Grown on the Straw of Grain Sorghum Inoculated with Azospirillum brasilense and Intercropped with BRS Paiaguás Grass. PLANTS (BASEL, SWITZERLAND) 2023; 12:2007. [PMID: 37653924 PMCID: PMC10221422 DOI: 10.3390/plants12102007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2023] [Revised: 04/24/2023] [Accepted: 05/11/2023] [Indexed: 09/02/2023]
Abstract
The adoption of diversified agricultural systems that employ integrated cultural practices appears to be the way to sustainably intensify tropical agriculture. Our objectives were to evaluate the dry matter (DM) accumulation of sorghum inoculated with Azospirillum brasilense, with or without a nitrogen fertilization split, intercropped with palisade grass (Urochloa brizantha cv. BRS Paiaguás), and how these practices influenced the nutrition and development of soybean in succession. The design was a randomized complete block in a 2 × 2 × 3 factorial, consisting of sorghum monoculture cropped or intercropped with palisade grass, sorghum either inoculated or not with A. brasilense, and nitrogen applied at 120 kg ha-1 N only at sowing, only at topdressing, or split-30% at sowing and 70% at topdressing at the beginning of the panicle initiation stage. The residual impacts of these treatments on the following soybean crop were also evaluated. Higher DM yield occurred in sorghum inoculated with A. brasilense, however, this result varied by year. The sorghum-palisade grass intercrop produced a higher amount of straw than sorghum monoculture. The nutrition of soybean was adequate regardless of treatments, but grain yield was higher when the sorghum residue was inoculated. The inoculation of A. brasilense in sorghum intercropped with palisade grass increased yield. The nutrition of soybean was adequate regardless of the treatments, while grain yield was higher on the inoculated sorghum residues. The inoculation of A. brasilense in sorghum intercropped with palisade grass increased DM yield. The intercropping increased the production of biomass for animal grazing and DM for soil coverage. The inoculation of sorghum by A. brasilense and its intercropping with palisade grass contributed to higher soybean yield in succession.
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Affiliation(s)
- Deyvison de Asevedo Soares
- Department of Soil Science, University of Sao Paulo—College of Agriculture “Luiz de Queiroz”, Piracicaba 13418-900, Brazil
| | - Viviane Cristina Modesto
- Department of Plant Health, Rural Engineering and Soils, Faculty of Engineering of Ilha Solteira/UNESP, Ilha Solteira 15385-000, Brazil
| | - Allan Hisashi Nakao
- Department of Plant Health, Rural Engineering and Soils, Faculty of Engineering of Ilha Solteira/UNESP, Ilha Solteira 15385-000, Brazil
| | - Wellington Rosa Soares
- Department of Soil Science, University of Sao Paulo—College of Agriculture “Luiz de Queiroz”, Piracicaba 13418-900, Brazil
| | - Leandro Alves Freitas
- Department of Plant Health, Rural Engineering and Soils, Faculty of Engineering of Ilha Solteira/UNESP, Ilha Solteira 15385-000, Brazil
| | - Lourdes Dickmann
- Department of Plant Health, Rural Engineering and Soils, Faculty of Engineering of Ilha Solteira/UNESP, Ilha Solteira 15385-000, Brazil
| | - Isabô Melina Pascoaloto
- Department of Plant Health, Rural Engineering and Soils, Faculty of Engineering of Ilha Solteira/UNESP, Ilha Solteira 15385-000, Brazil
| | - Marcelo Andreotti
- Department of Plant Health, Rural Engineering and Soils, Faculty of Engineering of Ilha Solteira/UNESP, Ilha Solteira 15385-000, Brazil
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13
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Jalal A, da Silva Oliveira CE, Galindo FS, Rosa PAL, Gato IMB, de Lima BH, Teixeira Filho MCM. Regulatory Mechanisms of Plant Growth-Promoting Rhizobacteria and Plant Nutrition against Abiotic Stresses in Brassicaceae Family. Life (Basel) 2023; 13:211. [PMID: 36676160 PMCID: PMC9860783 DOI: 10.3390/life13010211] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2022] [Revised: 12/29/2022] [Accepted: 01/05/2023] [Indexed: 01/12/2023] Open
Abstract
Extreme environmental conditions, such as abiotic stresses (drought, salinity, heat, chilling and intense light), offer great opportunities to study how different microorganisms and plant nutrition can influence plant growth and development. The intervention of biological agents such as plant growth-promoting rhizobacteria (PGPRs) coupled with proper plant nutrition can improve the agricultural importance of different plant species. Brassicaceae (Cruciferae) belongs to the monophyletic taxon and consists of around 338 genera and 3709 species worldwide. Brassicaceae is composed of several important species of economical, ornamental and food crops (vegetables, cooking oils, forage, condiments and industrial species). Sustainable production of Brassicas plants has been compromised over the years due to several abiotic stresses and the unbalanced utilization of chemical fertilizers and uncertified chemicals that ultimately affect the environment and human health. This chapter summarized the influence of PGPRs and nutrient management in the Brassicaceae family against abiotic stresses. The use of PGPRs contributed to combating climate-induced change/abiotic factors such as drought, soil and water salinization and heavy metal contamination that limits the general performance of plants. Brassica is widely utilized as an oil and vegetable crop and is harshly affected by abiotic stresses. Therefore, the use of PGPRs along with proper mineral nutrients management is a possible strategy to cope with abiotic stresses by improving biochemical, physiological and growth attributes and the production of brassica in an eco-friendly environment.
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Affiliation(s)
- Arshad Jalal
- Department of Plant Health, Rural Engineering, and Soils, Campus of Ilha Solteira, São Paulo State University (UNESP), Av. Brasil, 56- Centro, Ilha Solteira 15385-000, SP, Brazil
| | - Carlos Eduardo da Silva Oliveira
- Department of Plant Health, Rural Engineering, and Soils, Campus of Ilha Solteira, São Paulo State University (UNESP), Av. Brasil, 56- Centro, Ilha Solteira 15385-000, SP, Brazil
| | - Fernando Shintate Galindo
- Faculty of Agricultural and Technological Sciences, Campus of Dracena, São Paulo State University (UNESP), Dracena 17900-000, SP, Brazil
| | - Poliana Aparecida Leonel Rosa
- Department of Plant Health, Rural Engineering, and Soils, Campus of Ilha Solteira, São Paulo State University (UNESP), Av. Brasil, 56- Centro, Ilha Solteira 15385-000, SP, Brazil
| | - Isabela Martins Bueno Gato
- Department of Plant Health, Rural Engineering, and Soils, Campus of Ilha Solteira, São Paulo State University (UNESP), Av. Brasil, 56- Centro, Ilha Solteira 15385-000, SP, Brazil
| | - Bruno Horschut de Lima
- Department of Plant Health, Rural Engineering, and Soils, Campus of Ilha Solteira, São Paulo State University (UNESP), Av. Brasil, 56- Centro, Ilha Solteira 15385-000, SP, Brazil
| | - Marcelo Carvalho Minhoto Teixeira Filho
- Department of Plant Health, Rural Engineering, and Soils, Campus of Ilha Solteira, São Paulo State University (UNESP), Av. Brasil, 56- Centro, Ilha Solteira 15385-000, SP, Brazil
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14
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Mokeev DI, Volokhina IV, Telesheva EM, Evstigneeva SS, Grinev VS, Pylaev TE, Petrova LP, Shelud’ko AV. Resistance of Biofilms Formed by the Soil Bacterium Azospirillum brasilense to Osmotic Stress. Microbiology (Reading) 2022. [DOI: 10.1134/s0026261722601567] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022] Open
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15
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Ma H, Li P, Xiao N, Xia T. Poly-γ-glutamic acid promoted maize root development by affecting auxin signaling pathway and the abundance and diversity of rhizosphere microbial community. BMC PLANT BIOLOGY 2022; 22:521. [PMID: 36352394 PMCID: PMC9647955 DOI: 10.1186/s12870-022-03908-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/03/2022] [Accepted: 10/25/2022] [Indexed: 06/16/2023]
Abstract
BACKGROUND The root systems of higher plants play an important role in plant growth and development. In our present study, it was found that poly-γ-glutamic acid (γ-PGA), an environmentally friendly biomacromolecule, significantly improved root development in maize. RESULTS After treatment with γ-PGA for 7 days, the fresh weight of maize roots was significantly increased and the differences between γ-PGA treated group and control group were mainly caused by the number (higher by 71.87% compared to the control) and length of lateral roots. RNAseq and RT-PCR analyses showed that γ-PGA treatment upregulated the expression of genes related to the synthesis of auxins and auxin signal in maize roots. In addition, γ-PGA promoted the accumulation of plant growth-promoting bacteria, such as Azospirillum, Azohydromonas, Ramlibacter, and Sphingobium (Proteobacteria), Streptomyces (Actinobacteria), Parasegetibacter (Bacteroidetes), and Gemmatimonas (Gemmatimonadetes) in rhizosphere soil and the secretion of auxins. The results of this study deepened our understanding of the effects and mechanism of γ-PGA on maize root development, and as well as highlighted the possibility of using γ-PGA to improve crop growth and soil environment. CONCLUSIONS γ-PGA promotes early growth and development of maize roots by inducing the secretion and accumulation of auxin in roots and in rhizosphere soil, and increasing the abundance of plant growth promoting bacteria.
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Affiliation(s)
- Haizhen Ma
- State Key Laboratory of Biobased Material and Green Papermaking, Qilu University of Technology (Shandong Academy of Sciences), Jinan, Shandong, PR China
- School of Bioengineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250353, Shandong, PR China
| | - Panpan Li
- State Key Laboratory of Biobased Material and Green Papermaking, Qilu University of Technology (Shandong Academy of Sciences), Jinan, Shandong, PR China
- School of Bioengineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250353, Shandong, PR China
| | - Ning Xiao
- State Key Laboratory of Biobased Material and Green Papermaking, Qilu University of Technology (Shandong Academy of Sciences), Jinan, Shandong, PR China
- School of Bioengineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250353, Shandong, PR China
| | - Tao Xia
- State Key Laboratory of Biobased Material and Green Papermaking, Qilu University of Technology (Shandong Academy of Sciences), Jinan, Shandong, PR China.
- School of Bioengineering, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250353, Shandong, PR China.
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16
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Evstigneeva SS, Mokeev DI, Petrova LP, Shelud’ko AV. Genetic Aspects of Mechanosensitivity in the Alphaproteobacteria Azospirillum baldaniorum with Mixed Flagellation. MOLECULAR GENETICS, MICROBIOLOGY AND VIROLOGY 2022. [DOI: 10.3103/s0891416822020045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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17
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Kumar S, Diksha, Sindhu SS, Kumar R. Biofertilizers: An ecofriendly technology for nutrient recycling and environmental sustainability. CURRENT RESEARCH IN MICROBIAL SCIENCES 2021; 3:100094. [PMID: 35024641 PMCID: PMC8724949 DOI: 10.1016/j.crmicr.2021.100094] [Citation(s) in RCA: 49] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2021] [Revised: 12/09/2021] [Accepted: 12/09/2021] [Indexed: 01/02/2023] Open
Abstract
Modern intensive agricultural practices face numerous challenges that pose major threats to global food security. In order to address the nutritional requirements of the ever-increasing world population, chemical fertilizers and pesticides are applied on large scale to increase crop production. However, the injudicious use of agrochemicals has resulted in environmental pollution leading to public health hazards. Moreover, agriculture soils are continuously losing their quality and physical properties as well as their chemical (imbalance of nutrients) and biological health. Plant-associated microbes with their plant growth- promoting traits have enormous potential to solve these challenges and play a crucial role in enhancing plant biomass and crop yield. The beneficial mechanisms of plant growth improvement include enhanced nutrient availability, phytohormone modulation, biocontrol of phytopathogens and amelioration of biotic and abiotic stresses. Solid-based or liquid bioinoculant formulation comprises inoculum preparation, addition of cell protectants such as glycerol, lactose, starch, a good carrier material, proper packaging and best delivery methods. Recent developments of formulation include entrapment/microencapsulation, nano-immobilization of microbial bioinoculants and biofilm-based biofertilizers. This review critically examines the current state-of-art on use of microbial strains as biofertilizers and the important roles performed by these beneficial microbes in maintaining soil fertility and enhancing crop productivity.
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Key Words
- ABA, Abscisic acid
- ACC, 1-aminocyclopropane-1-carboxylic acid
- AM, Arbuscular mycorrhiza
- APX, Ascorbate peroxidase
- BGA, Blue green algae
- BNF, Biological nitrogen fixation
- Beneficial microorganisms
- Biofertilizers
- CAT, Catalase
- Crop production
- DAPG, 2, 4-diacetyl phloroglucinol
- DRB, Deleterious rhizospheric bacteria
- GA, Gibberellic acid
- GPX, Glutathione/thioredoxin peroxidase
- HCN, Hydrogen cyanide
- IAA, Indole acetic acid
- IAR, Intrinsic antibiotic resistance
- ISR, Induced systemic resistance
- KMB, Potassium mobilizing bacteria
- KSMs, Potassium-solubilizing microbes
- MAMPs, Microbes associated molecular patterns
- PAMPs, Pathogen associated molecular patterns
- PCA, Phenazine-1-carboxylic acid
- PGP, Plant growth-promoting
- PGPR, Plant growth-promoting rhizobacteria
- POD, Peroxidase
- PSB, Phosphate-solubilizing bacteria
- Rhizosphere
- SAR, Systemic acquired resistance
- SOB, Sulphur oxidizing bacteria
- Soil fertility
- Sustainable agriculture
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Affiliation(s)
- Satish Kumar
- Department of Microbiology, CCS Haryana Agricultural University, Hisar 125004, India
| | - Diksha
- Department of Microbiology, CCS Haryana Agricultural University, Hisar 125004, India
| | - Satyavir S. Sindhu
- Department of Microbiology, CCS Haryana Agricultural University, Hisar 125004, India
| | - Rakesh Kumar
- Department of Microbiology, CCS Haryana Agricultural University, Hisar 125004, India
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Evstigneeva SS, Telesheva EM, Mokeev DI, Borisov IV, Petrova LP, Shelud’ko AV. Response of Bacteria to Mechanical Stimuli. Microbiology (Reading) 2021. [DOI: 10.1134/s0026261721050052] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
Abstract
Abstract—
Bacteria adapt rapidly to changes in ambient conditions, constantly inspecting their surroundings by means of their sensor systems. These systems are often thought to respond only to signals of a chemical nature. Yet, bacteria are often affected by mechanical forces, e.g., during transition from planktonic to sessile state. Mechanical stimuli, however, have seldom been considered as the signals bacteria can sense and respond to. Nonetheless, bacteria perceive mechanical stimuli, generate signals, and develop responses. This review analyzes the information on the way bacteria respond to mechanical stimuli and outlines how bacteria convert incoming signals into appropriate responses.
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Basit A, Shah ST, Ullah I, Muntha ST, Mohamed HI. Microbe-assisted phytoremediation of environmental pollutants and energy recycling in sustainable agriculture. Arch Microbiol 2021; 203:5859-5885. [PMID: 34545411 DOI: 10.1007/s00203-021-02576-0] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2021] [Revised: 08/25/2021] [Accepted: 09/12/2021] [Indexed: 01/17/2023]
Abstract
The perception of phytoremediation is efficiently utilized as an eco-friendly practice of green plants combating and cleaning up the stressed environment without harming it. The industrial revolution was followed by the green revolution which fulfilled the food demands of the growing population caused an increase in yield per unit area in crop production, but it also increased the use of synthetic fertilizers in agriculture. Globally, the intensive use of inorganic fertilizers in agriculture has led to serious health problems and irreversible environmental damage. Biofertilizers improve the growth of the plant and can be applied as an alternative to chemical/synthetic fertilizers. Cyanobacteria, bacteria, and fungi are known as some of the principal microbe groups used to produce biofertilizers that form symbiotic associations with plants. Microorganisms perform a key role in phosphate solubilization and mobilization, nitrogen fixation, nutrient management, biotic elicitors and probiotics, and pollution management (biodegradation agents), specifically bacteria which also help in atmospheric nitrogen fixation and are thus available for the growth of the plant. Management or biodegradation of hazardous chemical residues and heavy metals produced by a huge number of large-scale industries should be given primary importance to be transformed by various bacterial strains, fungi, algae. Currently, modern omics technologies such as metagenomic, transcriptomic, and proteomic are being used to develop strategies for studying the ecology of microorganisms, as well as their use in environmental monitoring and bioremediation. This review briefly discusses some of the major groups of microorganisms that can perform different functions responsible for plant health, crop production, phytoremediation and also focus on the omics techniques reportedly used in environmental monitoring to tackle the pollution load.
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Affiliation(s)
- Abdul Basit
- Department of Horticulture, Faculty of Crop Production, The University of Agriculture Peshawar, Peshawar, 25120, Pakistan
| | - Syed Tanveer Shah
- Department of Horticulture, Faculty of Crop Production, The University of Agriculture Peshawar, Peshawar, 25120, Pakistan
| | - Izhar Ullah
- Department of Horticulture, Faculty of Crop Production, The University of Agriculture Peshawar, Peshawar, 25120, Pakistan
| | - Sidra Tul Muntha
- Laboratory of Germplasm Innovation and Molecular Breeding, Institute of Vegetable Sciences, Zhejiang University, Hangzhou, 310058, China
| | - Heba I Mohamed
- Department of Biological and Geological Sciences, Faculty of Education, Ain Shams University, Cairo, Egypt.
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20
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Role of a fasciclin domain protein in photooxidative stress and flocculation in Azospirillum brasilense Sp7. Res Microbiol 2021; 172:103875. [PMID: 34461275 DOI: 10.1016/j.resmic.2021.103875] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2021] [Revised: 08/13/2021] [Accepted: 08/19/2021] [Indexed: 11/22/2022]
Abstract
Fasciclin domain proteins (FDP) are found in all domains of life, but their biological role and regulation are not clearly understood. While studying the proteome of a mutant (Car1) of Azospirillum brasilense Sp7 with a Tn5 insertion in the gene encoding an anti-sigma factor (ChrR1), we found that FDP was maximally expressed. To study the biological role of this FDP, we inactivated fdp in A. brasilense Sp7 and in its Car1 mutant, which rendered them sensitive to methylene blue (MB) and toluidine blue (TB) in the presence of light. The transcription of fdp was also strongly upregulated by an ECF sigma factor (RpoE1) and photooxidative stress. The fdp null mutants of A. brasilense Sp7 and its Car1 mutant produced relatively fewer carotenoids and showed reduced flocculation. The reduced ability of fdp null mutants to flocculate was partly due to their reduced ability to produce carotenoids as inhibition of carotenoid synthesis by diphenylamine reduced their flocculation ability by 15-20%. Hence, FDP plays an important role in protecting A. brasilense Sp7 against photo-oxidative stress by supporting carotenoid accumulation and cell aggregation.
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21
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Petrova LP, Filip’echeva YA, Telesheva EM, Pylaev TE, Shelud’ko AV. Variations in Lipopolysaccharide Synthesis Affect Formation of Azospirillum baldaniorum Biofilms in planta at Elevated Copper Content. Microbiology (Reading) 2021. [DOI: 10.1134/s002626172104010x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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22
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Galindo FS, Pagliari PH, Buzetti S, Rodrigues WL, Fernandes GC, Biagini ALC, Marega EMR, Tavanti RFR, Jalal A, Teixeira Filho MCM. Corn shoot and grain nutrient uptake affected by silicon application combined with Azospirillum brasilense inoculation and nitrogen rates. JOURNAL OF PLANT NUTRITION 2021. [DOI: 10.1080/01904167.2021.1943436] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Fernando Shintate Galindo
- Department of Plant Health, Rural Engineering, and Soils, São Paulo State University, Ilha Solteira, Brazil
| | - Paulo Humberto Pagliari
- Department of Soil, Water, and Climate, University of Minnesota, Southwest Research and Outreach Center, Lamberton, MN, USA
| | - Salatiér Buzetti
- Department of Plant Health, Rural Engineering, and Soils, São Paulo State University, Ilha Solteira, Brazil
| | - Willian Lima Rodrigues
- Department of Plant Health, Rural Engineering, and Soils, São Paulo State University, Ilha Solteira, Brazil
| | - Guilherme Carlos Fernandes
- Department of Plant Health, Rural Engineering, and Soils, São Paulo State University, Ilha Solteira, Brazil
| | | | - Evelyn Maria Rocha Marega
- Department of Plant Health, Rural Engineering, and Soils, São Paulo State University, Ilha Solteira, Brazil
| | | | - Arshad Jalal
- Department of Plant Health, Rural Engineering, and Soils, São Paulo State University, Ilha Solteira, Brazil
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23
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Grillo-Puertas M, Villegas JM, Pankievicz VCS, Tadra-Sfeir MZ, Teles Mota FJ, Hebert EM, Brusamarello-Santos L, Pedraza RO, Pedrosa FO, Rapisarda VA, Souza EM. Transcriptional Responses of Herbaspirillum seropedicae to Environmental Phosphate Concentration. Front Microbiol 2021; 12:666277. [PMID: 34177845 PMCID: PMC8222739 DOI: 10.3389/fmicb.2021.666277] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2021] [Accepted: 04/29/2021] [Indexed: 12/02/2022] Open
Abstract
Herbaspirillum seropedicae is a nitrogen-fixing endophytic bacterium associated with important cereal crops, which promotes plant growth, increasing their productivity. The understanding of the physiological responses of this bacterium to different concentrations of prevailing nutrients as phosphate (Pi) is scarce. In some bacteria, culture media Pi concentration modulates the levels of intracellular polyphosphate (polyP), modifying their cellular fitness. Here, global changes of H. seropedicae SmR1 were evaluated in response to environmental Pi concentrations, based on differential intracellular polyP levels. Cells grown in high-Pi medium (50 mM) maintained high polyP levels in stationary phase, while those grown in sufficient Pi medium (5 mM) degraded it. Through a RNA-seq approach, comparison of transcriptional profiles of H. seropedicae cultures revealed that 670 genes were differentially expressed between both Pi growth conditions, with 57% repressed and 43% induced in the high Pi condition. Molecular and physiological analyses revealed that aspects related to Pi metabolism, biosynthesis of flagella and chemotaxis, energy production, and polyhydroxybutyrate metabolism were induced in the high-Pi condition, while those involved in adhesion and stress response were repressed. The present study demonstrated that variations in environmental Pi concentration affect H. seropedicae traits related to survival and other important physiological characteristics. Since environmental conditions can influence the effectiveness of the plant growth-promoting bacteria, enhancement of bacterial robustness to withstand different stressful situations is an interesting challenge. The obtained data could serve not only to understand the bacterial behavior in respect to changes in rhizospheric Pi gradients but also as a base to design strategies to improve different bacterial features focusing on biotechnological and/or agricultural purposes.
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Affiliation(s)
- Mariana Grillo-Puertas
- Instituto de Química Biológica, “Dr. Bernabé Bloj”, Facultad de Bioquímica, Química y Farmacia, Universidad Nacional de Tucumán (UNT) and Instituto Superior de Investigaciones Biológicas (INSIBIO), CONICET-UNT, San Miguel de Tucumán, Argentina
| | - Josefina M. Villegas
- Instituto de Química Biológica, “Dr. Bernabé Bloj”, Facultad de Bioquímica, Química y Farmacia, Universidad Nacional de Tucumán (UNT) and Instituto Superior de Investigaciones Biológicas (INSIBIO), CONICET-UNT, San Miguel de Tucumán, Argentina
| | - Vânia C. S. Pankievicz
- Department of Biochemistry and Molecular Biology, Universidade Federal do Paraná, Curitiba, Brazil
| | - Michelle Z. Tadra-Sfeir
- Department of Biochemistry and Molecular Biology, Universidade Federal do Paraná, Curitiba, Brazil
| | - Francisco J. Teles Mota
- Department of Biochemistry and Molecular Biology, Universidade Federal do Paraná, Curitiba, Brazil
| | - Elvira M. Hebert
- Centro de Referencia para Lactobacilos (CERELA-CONICET), San Miguel de Tucumán, Argentina
| | | | - Raul O. Pedraza
- Facultad de Agronomía y Zootecnia, Universidad Nacional de Tucumán (UNT), San Miguel de Tucumán, Argentina
| | - Fabio O. Pedrosa
- Department of Biochemistry and Molecular Biology, Universidade Federal do Paraná, Curitiba, Brazil
| | - Viviana A. Rapisarda
- Instituto de Química Biológica, “Dr. Bernabé Bloj”, Facultad de Bioquímica, Química y Farmacia, Universidad Nacional de Tucumán (UNT) and Instituto Superior de Investigaciones Biológicas (INSIBIO), CONICET-UNT, San Miguel de Tucumán, Argentina
| | - Emanuel M. Souza
- Department of Biochemistry and Molecular Biology, Universidade Federal do Paraná, Curitiba, Brazil
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Müller-Santos M, Koskimäki JJ, Alves LPS, de Souza EM, Jendrossek D, Pirttilä AM. The protective role of PHB and its degradation products against stress situations in bacteria. FEMS Microbiol Rev 2021; 45:fuaa058. [PMID: 33118006 DOI: 10.1093/femsre/fuaa058] [Citation(s) in RCA: 42] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2020] [Accepted: 10/26/2020] [Indexed: 12/15/2022] Open
Abstract
Many bacteria produce storage biopolymers that are mobilized under conditions of metabolic adaptation, for example, low nutrient availability and cellular stress. Polyhydroxyalkanoates are often found as carbon storage in Bacteria or Archaea, and of these polyhydroxybutyrate (PHB) is the most frequently occurring PHA type. Bacteria usually produce PHB upon availability of a carbon source and limitation of another essential nutrient. Therefore, it is widely believed that the function of PHB is to serve as a mobilizable carbon repository when bacteria face carbon limitation, supporting their survival. However, recent findings indicate that bacteria switch from PHB synthesis to mobilization under stress conditions such as thermal and oxidative shock. The mobilization products, 3-hydroxybutyrate and its oligomers, show a protective effect against protein aggregation and cellular damage caused by reactive oxygen species and heat shock. Thus, bacteria should have an environmental monitoring mechanism directly connected to the regulation of the PHB metabolism. Here, we review the current knowledge on PHB physiology together with a summary of recent findings on novel functions of PHB in stress resistance. Potential applications of these new functions are also presented.
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Affiliation(s)
- Marcelo Müller-Santos
- Department of Biochemistry and Molecular Biology, Federal University of Paraná - UFPR, Setor de Ciências Biológicas, Centro Politécnico, Jardim da Américas, CEP: 81531-990, Caixa Postal: 190-46, Curitiba, Paraná, Brazil
| | - Janne J Koskimäki
- Ecology and Genetics Research Unit, University of Oulu, Pentti Kaiteran katu 1, P.O. Box 3000, FI-90014 Oulu, Finland
| | - Luis Paulo Silveira Alves
- Department of Biochemistry and Molecular Biology, Federal University of Paraná - UFPR, Setor de Ciências Biológicas, Centro Politécnico, Jardim da Américas, CEP: 81531-990, Caixa Postal: 190-46, Curitiba, Paraná, Brazil
| | - Emanuel Maltempi de Souza
- Department of Biochemistry and Molecular Biology, Federal University of Paraná - UFPR, Setor de Ciências Biológicas, Centro Politécnico, Jardim da Américas, CEP: 81531-990, Caixa Postal: 190-46, Curitiba, Paraná, Brazil
| | - Dieter Jendrossek
- Institute of Microbiology, University of Stuttgart, Allmandring 31, 70569 Stuttgart, Germany
| | - Anna Maria Pirttilä
- Ecology and Genetics Research Unit, University of Oulu, Pentti Kaiteran katu 1, P.O. Box 3000, FI-90014 Oulu, Finland
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25
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Housh AB, Powell G, Scott S, Anstaett A, Gerheart A, Benoit M, Waller S, Powell A, Guthrie JM, Higgins B, Wilder SL, Schueller MJ, Ferrieri RA. Functional mutants of Azospirillum brasilense elicit beneficial physiological and metabolic responses in Zea mays contributing to increased host iron assimilation. THE ISME JOURNAL 2021; 15:1505-1522. [PMID: 33408368 PMCID: PMC8115672 DOI: 10.1038/s41396-020-00866-x] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/18/2020] [Revised: 10/28/2020] [Accepted: 12/03/2020] [Indexed: 01/29/2023]
Abstract
Iron (Fe), an essential element for plant growth, is abundant in soil but with low bioavailability. Thus, plants developed specialized mechanisms to sequester the element. Beneficial microbes have recently become a favored method to promote plant growth through increased uptake of essential micronutrients, like Fe, yet little is known of their mechanisms of action. Functional mutants of the epiphytic bacterium Azospirillum brasilense, a prolific grass-root colonizer, were used to examine mechanisms for promoting iron uptake in Zea mays. Mutants included HM053, FP10, and ipdC, which have varying capacities for biological nitrogen fixation and production of the plant hormone auxin. Using radioactive iron-59 tracing and inductively coupled plasma mass spectrometry, we documented significant differences in host uptake of Fe2+/3+ correlating with mutant biological function. Radioactive carbon-11, administered to plants as 11CO2, provided insights into shifts in host usage of 'new' carbon resources in the presence of these beneficial microbes. Of the mutants examined, HM053 exhibited the greatest influence on host Fe uptake with increased plant allocation of 11C-resources to roots where they were transformed and exuded as 11C-acidic substrates to aid in Fe-chelation, and increased C-11 partitioning into citric acid, nicotianamine and histidine to aid in the in situ translocation of Fe once assimilated.
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Affiliation(s)
- A B Housh
- Missouri Research Reactor Center, University of Missouri, Columbia, MO, 65211, USA
- Chemistry Department, University of Missouri, Columbia, MO, 65211, USA
| | - G Powell
- Missouri Research Reactor Center, University of Missouri, Columbia, MO, 65211, USA
- Department of Biochemistry, University of Missouri, Columbia, MO, 65211, USA
| | - S Scott
- Missouri Research Reactor Center, University of Missouri, Columbia, MO, 65211, USA
- Department of Biochemistry, University of Missouri, Columbia, MO, 65211, USA
| | - A Anstaett
- Missouri Research Reactor Center, University of Missouri, Columbia, MO, 65211, USA
- Department of Chemical Engineering, University of Missouri, Columbia, MO, 65211, USA
- Burns & McDonnell, Inc. 425 S, Woods Mill Rd., Chesterfield, MO, USA, 63017
| | - A Gerheart
- Missouri Research Reactor Center, University of Missouri, Columbia, MO, 65211, USA
- Chemistry Department, University of Missouri, Columbia, MO, 65211, USA
- Idaho State Police 5255 S. 5th Ave, Pocatello, ID, 83204, USA
| | - M Benoit
- Missouri Research Reactor Center, University of Missouri, Columbia, MO, 65211, USA
- Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA
| | - S Waller
- Missouri Research Reactor Center, University of Missouri, Columbia, MO, 65211, USA
- School of Natural Resources, University of Missouri, Columbia, MO, 65211, USA
| | - A Powell
- Missouri Research Reactor Center, University of Missouri, Columbia, MO, 65211, USA
- School of Natural Resources, University of Missouri, Columbia, MO, 65211, USA
| | - J M Guthrie
- Missouri Research Reactor Center, University of Missouri, Columbia, MO, 65211, USA
| | - B Higgins
- Missouri Research Reactor Center, University of Missouri, Columbia, MO, 65211, USA
| | - S L Wilder
- Missouri Research Reactor Center, University of Missouri, Columbia, MO, 65211, USA
| | - M J Schueller
- Missouri Research Reactor Center, University of Missouri, Columbia, MO, 65211, USA
- Chemistry Department, University of Missouri, Columbia, MO, 65211, USA
| | - R A Ferrieri
- Missouri Research Reactor Center, University of Missouri, Columbia, MO, 65211, USA.
- Chemistry Department, University of Missouri, Columbia, MO, 65211, USA.
- Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA.
- Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
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26
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Averkina IO, Harris M, Asare EO, Hourdin B, Paponov IA, Lillo C. Pinpointing regulatory protein phosphatase 2A subunits involved in beneficial symbiosis between plants and microbes. BMC PLANT BIOLOGY 2021; 21:183. [PMID: 33863284 PMCID: PMC8052836 DOI: 10.1186/s12870-021-02960-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/03/2021] [Accepted: 03/31/2021] [Indexed: 06/12/2023]
Abstract
BACKGROUND PROTEIN PHOSPHATASE 2A (PP2A) expression is crucial for the symbiotic association between plants and various microbes, and knowledge on these symbiotic processes is important for sustainable agriculture. Here we tested the hypothesis that PP2A regulatory subunits, especially B'φ and B'θ, are involved in signalling between plants and mycorrhizal fungi or plant-growth promoting bacteria. RESULTS Treatment of tomato plants (Solanum lycopersicum) with the plant growth-promoting rhizobacteria (PGPR) Azospirillum brasilense and Pseudomonas simiae indicated a role for the PP2A B'θ subunit in responses to PGPR. Arbuscular mycorrhizal fungi influenced B'θ transcript levels in soil-grown plants with canonical arbuscular mycorrhizae. In plant roots, transcripts of B'φ were scarce under all conditions tested and at a lower level than all other PP2A subunit transcripts. In transformed tomato plants with 10-fold enhanced B'φ expression, mycorrhization frequency was decreased in vermiculite-grown plants. Furthermore, the high B'φ expression was related to abscisic acid and gibberellic acid responses known to be involved in plant growth and mycorrhization. B'φ overexpressor plants showed less vigorous growth, and although fruits were normal size, the number of seeds per fruit was reduced by 60% compared to the original cultivar. CONCLUSIONS Expression of the B'θ gene in tomato roots is strongly influenced by beneficial microbes. Analysis of B'φ overexpressor tomato plants and established tomato cultivars substantiated a function of B'φ in growth and development in addition to a role in mycorrhization.
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Affiliation(s)
- Irina O Averkina
- IKBM, Department of Chemistry, Bioscience and Environmental Engineering, University of Stavanger, 4036, Stavanger, Norway
| | - Muhammad Harris
- IKBM, Department of Chemistry, Bioscience and Environmental Engineering, University of Stavanger, 4036, Stavanger, Norway
- Faculty of Veterinary Medicine, Norwegian University of Life Sciences, 1433, Ås, Norway
| | - Edward Ohene Asare
- IKBM, Department of Chemistry, Bioscience and Environmental Engineering, University of Stavanger, 4036, Stavanger, Norway
| | - Berenice Hourdin
- IKBM, Department of Chemistry, Bioscience and Environmental Engineering, University of Stavanger, 4036, Stavanger, Norway
| | - Ivan A Paponov
- NIBIO, Norwegian institute of Bioeconomy Research, Division of Food Production and Society, P.O. Box 115, NO-1431, Ås, Norway
- Current address: Department of Food Science, 8200 Aarhus University, Aarhus, Denmark
| | - Cathrine Lillo
- IKBM, Department of Chemistry, Bioscience and Environmental Engineering, University of Stavanger, 4036, Stavanger, Norway.
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Bacterial Plant Biostimulants: A Sustainable Way towards Improving Growth, Productivity, and Health of Crops. SUSTAINABILITY 2021. [DOI: 10.3390/su13052856] [Citation(s) in RCA: 78] [Impact Index Per Article: 26.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
This review presents a comprehensive and systematic study of the field of bacterial plant biostimulants and considers the fundamental and innovative principles underlying this technology. Plant biostimulants are an important tool for modern agriculture as part of an integrated crop management (ICM) system, helping make agriculture more sustainable and resilient. Plant biostimulants contain substance(s) and/or microorganisms whose function when applied to plants or the rhizosphere is to stimulate natural processes to enhance plant nutrient uptake, nutrient use efficiency, tolerance to abiotic stress, biocontrol, and crop quality. The use of plant biostimulants has gained substantial and significant heed worldwide as an environmentally friendly alternative to sustainable agricultural production. At present, there is an increasing curiosity in industry and researchers about microbial biostimulants, especially bacterial plant biostimulants (BPBs), to improve crop growth and productivity. The BPBs that are based on PGPR (plant growth-promoting rhizobacteria) play plausible roles to promote/stimulate crop plant growth through several mechanisms that include (i) nutrient acquisition by nitrogen (N2) fixation and solubilization of insoluble minerals (P, K, Zn), organic acids and siderophores; (ii) antimicrobial metabolites and various lytic enzymes; (iii) the action of growth regulators and stress-responsive/induced phytohormones; (iv) ameliorating abiotic stress such as drought, high soil salinity, extreme temperatures, oxidative stress, and heavy metals by using different modes of action; and (v) plant defense induction modes. Presented here is a brief review emphasizing the applicability of BPBs as an innovative exertion to fulfill the current food crisis.
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28
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Shelud’ko AV, Mokeev DI, Evstigneeva SS, Filip’echeva YA, Burov AM, Petrova LP, Katsy EI. Suppressed Biofilm Formation Efficiency and Decreased Biofilm Resistance to Oxidative Stress and Drying in an Azospirillum brasilense
ahpC Mutant. Microbiology (Reading) 2021. [DOI: 10.1134/s0026261721010100] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
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Specific PP2A Catalytic Subunits Are a Prerequisite for Positive Growth Effects in Arabidopsis Co-Cultivated with Azospirillum brasilense and Pseudomonas simiae. PLANTS 2020; 10:plants10010066. [PMID: 33396893 PMCID: PMC7823443 DOI: 10.3390/plants10010066] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/09/2020] [Revised: 12/24/2020] [Accepted: 12/25/2020] [Indexed: 11/16/2022]
Abstract
Plant growth-promoting rhizobacteria (PGPR) stimulate plant growth, but the underlying mechanism is poorly understood. In this study, we asked whether PROTEIN PHOSPHATASE 2A (PP2A), a regulatory molecular component of stress, growth, and developmental signaling networks in plants, contributes to the plant growth responses induced by the PGPR Azospirillum brasilense (wild type strain Sp245 and auxin deficient strain FAJ0009) and Pseudomonas simiae (WCS417r). The PGPR were co-cultivated with Arabidopsis wild type (WT) and PP2A (related) mutants. These plants had mutations in the PP2A catalytic subunits (C), and the PP2A activity-modulating genes LEUCINE CARBOXYL METHYL TRANSFERASE 1 (LCMT1) and PHOSPHOTYROSYL PHOSPHATASE ACTIVATOR (PTPA). When exposed to the three PGPR, WT and all mutant Arabidopsis revealed the typical phenotype of PGPR-treated plants with shortened primary root and increased lateral root density. Fresh weight of plants generally increased when the seedlings were exposed to the bacteria strains, with the exception of catalytic subunit double mutant c2c5. The positive effect on root and shoot fresh weight was especially pronounced in Arabidopsis mutants with low PP2A activity. Comparison of different mutants indicated a significant role of the PP2A catalytic subunits C2 and C5 for a positive response to PGPR.
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Alberton D, Valdameri G, Moure VR, Monteiro RA, Pedrosa FDO, Müller-Santos M, de Souza EM. What Did We Learn From Plant Growth-Promoting Rhizobacteria (PGPR)-Grass Associations Studies Through Proteomic and Metabolomic Approaches? FRONTIERS IN SUSTAINABLE FOOD SYSTEMS 2020. [DOI: 10.3389/fsufs.2020.607343] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022] Open
Abstract
Plant growth stimulation by microorganisms that interact in a mutually beneficial manner remains poorly understood. Understanding the nature of plant-bacteria interactions may open new routes for plant productivity enhancement, especially cereal crops consumed by humans. Proteomic and metabolomic analyses are particularly useful for elucidating these mechanisms. A complete depiction of these mechanisms will prompt researchers to develop more efficient plant-bacteria associations. The success of microorganisms as biofertilizers may replace the current massive use of chemical fertilizers, mitigating many environmental and economic issues. In this review, we discuss the recent advances and current state of the art in proteomics and metabolomics studies involving grass-bacteria associations. We also discuss essential subjects involved in the bacterial plant-growth promotion, such, nitrogen fixation, plant stress, defense responses, and siderophore production.
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31
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Koul V, Srivastava D, Singh PP, Kochar M. Genome-wide identification of Azospirillum brasilense Sp245 small RNAs responsive to nitrogen starvation and likely involvement in plant-microbe interactions. BMC Genomics 2020; 21:821. [PMID: 33228533 PMCID: PMC7685610 DOI: 10.1186/s12864-020-07212-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2019] [Accepted: 11/05/2020] [Indexed: 12/17/2022] Open
Abstract
BACKGROUND Small RNAs (sRNAs) are non-coding RNAs known to regulate various biological functions such as stress adaptation, metabolism, virulence as well as pathogenicity across a wide range of bacteria, mainly by controlling mRNA stabilization or regulating translation. Identification and functional characterization of sRNAs has been carried out in various plant growth-promoting bacteria and they have been shown to help the cells cope up with environmental stress. No study has been carried out to uncover these regulatory molecules in the diazotrophic alpha-proteobacterium Azospirillum brasilense Sp245 to date. RESULTS Expression-based sRNA identification (RNA-seq) revealed the first list of ~ 468 sRNA candidate genes in A. brasilense Sp245 that were differentially expressed in nitrogen starvation versus non-starved conditions. In parallel, in silico tools also identified 2 of the above as candidate sRNAs. Altogether, putative candidates were stringently curated from RNA-seq data based on known sRNA parameters (size, location, secondary structure, and abundance). In total, ~ 59 significantly expressed sRNAs were identified in this study of which 53 are potentially novel sRNAs as they have no Rfam and BSRD homologs. Sixteen sRNAs were randomly selected and validated for differential expression, which largely was found to be in congruence with the RNA-seq data. CONCLUSIONS Differential expression of 468 A. brasilense sRNAs was indicated by RNA-seq data, a subset of which was confirmed by expression analysis. Four of the significantly expressed sRNAs were not observed in nitrogen starvation while 16 sRNAs were found to be exclusively expressed in nitrogen depletion. Putative candidate sRNAs identified have potential mRNA targets primarily involved in stress (abiotic and biotic) adaptability; regulation of bacterial cellular, biological and molecular pathways such as nitrogen fixation, polyhydroxybutyrate synthesis, chemotaxis, biofilm formation and transcriptional regulation. In addition to directly influencing bacteria, some of these sRNAs also have targets influencing plant-microbe interactions through adhesion of bacteria to plant roots directly, suppressing host response, inducing plant defence and signalling.
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Affiliation(s)
- Vatsala Koul
- The Energy and Resources Institute, Darbari Seth Block, India Habitat Centre, Lodhi Road, New Delhi, 110003, India
- TERI Deakin Nanobiotechnology Centre, Sustainable Agriculture Division, The Energy and Resources Institute, Gurugram-Faridabad Road, Gwal Pahari, Haryana, 122003, India
| | - Divya Srivastava
- TERI Deakin Nanobiotechnology Centre, Sustainable Agriculture Division, The Energy and Resources Institute, Gurugram-Faridabad Road, Gwal Pahari, Haryana, 122003, India
| | - Pushplata Prasad Singh
- TERI Deakin Nanobiotechnology Centre, Sustainable Agriculture Division, The Energy and Resources Institute, Gurugram-Faridabad Road, Gwal Pahari, Haryana, 122003, India.
| | - Mandira Kochar
- TERI Deakin Nanobiotechnology Centre, Sustainable Agriculture Division, The Energy and Resources Institute, Gurugram-Faridabad Road, Gwal Pahari, Haryana, 122003, India.
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Chai X, Yang Y, Wang X, Hao P, Wang L, Wu T, Zhang X, Xu X, Han Z, Wang Y. Spatial variation of the soil bacterial community in major apple producing regions of China. J Appl Microbiol 2020; 130:1294-1306. [PMID: 33012070 DOI: 10.1111/jam.14878] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2020] [Revised: 09/18/2020] [Accepted: 09/26/2020] [Indexed: 11/26/2022]
Abstract
AIMS In China, apple production areas are largely from the coastal to inland areas and across varied climate zones. However, the relationship among soil micro-organisms, environmental factors and fruit quality has not been clearly confirmed in orchards. Here we attempted to identify the variation of soil bacteria in the main apple producing regions and reveal the relationship among climatic factor, soil properties, soil bacterial community and fruit quality. METHODS AND RESULTS Sixty soil samples were collected from six main apple producing areas in China. We examined the soil bacteria using bacterial 16S rRNA gene amplicon profiling. The results show that the soil bacterial diversity of apple orchards varied from the Bohai Bay Region to the Loess Plateau Region. Proteobacteria, Acidobacteria and Actinobacteria were the predominant taxa at the phylum level for all six areas. In the Bohai Bay and the Loess Plateau region, which are the two largest apple producing areas, Proteobacteria and Actinobacteria had the highest relative abundance, respectively. Furthermore, soil bacterial diversity showed positive correlation with the mean annual temperature (MAT), soil organic matter (SOM) and pH. Excluding a direct effect on the apple fruit quality, MAT exerted an indirect influence through soil SOM and pH to alter the relative abundance of dominant taxa and shift the bacterial diversity, which affects the apple fruit titratable acids and soluble solids. CONCLUSIONS Geographic variables underlie apple orchard soil bacterial communities vary according to spatial scale. Environmental factors exert an indirect effect on apple fruit quality via shaping soil bacterial community. SIGNIFICANCE AND IMPACT OF THE STUDY This study provides a list of bacteria associated with environmental factors and the ecological attributes of their interactions in apple orchards, which will improve our ability to promote soil bacterial functional capabilities in order to reduce the fertilizer input and enhance the fruit quality.
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Affiliation(s)
- X Chai
- College of Horticulture, China Agricultural University, Beijing, P. R. China.,Key Laboratory of Biology and Genetic Improvement of Horticultural (Nutrition and Physiology), the Ministry of Agriculture and Rural Affairs, Beijing, P. R. China
| | - Y Yang
- College of Horticulture, China Agricultural University, Beijing, P. R. China.,Key Laboratory of Biology and Genetic Improvement of Horticultural (Nutrition and Physiology), the Ministry of Agriculture and Rural Affairs, Beijing, P. R. China
| | - X Wang
- College of Horticulture, China Agricultural University, Beijing, P. R. China.,Key Laboratory of Biology and Genetic Improvement of Horticultural (Nutrition and Physiology), the Ministry of Agriculture and Rural Affairs, Beijing, P. R. China
| | - P Hao
- College of Horticulture, China Agricultural University, Beijing, P. R. China.,Key Laboratory of Biology and Genetic Improvement of Horticultural (Nutrition and Physiology), the Ministry of Agriculture and Rural Affairs, Beijing, P. R. China
| | - L Wang
- College of Horticulture, China Agricultural University, Beijing, P. R. China.,Key Laboratory of Biology and Genetic Improvement of Horticultural (Nutrition and Physiology), the Ministry of Agriculture and Rural Affairs, Beijing, P. R. China
| | - T Wu
- College of Horticulture, China Agricultural University, Beijing, P. R. China.,Key Laboratory of Biology and Genetic Improvement of Horticultural (Nutrition and Physiology), the Ministry of Agriculture and Rural Affairs, Beijing, P. R. China
| | - X Zhang
- College of Horticulture, China Agricultural University, Beijing, P. R. China.,Key Laboratory of Biology and Genetic Improvement of Horticultural (Nutrition and Physiology), the Ministry of Agriculture and Rural Affairs, Beijing, P. R. China
| | - X Xu
- College of Horticulture, China Agricultural University, Beijing, P. R. China.,Key Laboratory of Biology and Genetic Improvement of Horticultural (Nutrition and Physiology), the Ministry of Agriculture and Rural Affairs, Beijing, P. R. China
| | - Z Han
- College of Horticulture, China Agricultural University, Beijing, P. R. China.,Key Laboratory of Biology and Genetic Improvement of Horticultural (Nutrition and Physiology), the Ministry of Agriculture and Rural Affairs, Beijing, P. R. China
| | - Y Wang
- College of Horticulture, China Agricultural University, Beijing, P. R. China.,Key Laboratory of Biology and Genetic Improvement of Horticultural (Nutrition and Physiology), the Ministry of Agriculture and Rural Affairs, Beijing, P. R. China
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Hernaández-Esquivel AA, Castro-Mercado E, Valencia-Cantero E, Alexandre G, García-Pineda E. Application of Azospirillum brasilense Lipopolysaccharides to Promote Early Wheat Plant Growth and Analysis of Related Biochemical Responses. FRONTIERS IN SUSTAINABLE FOOD SYSTEMS 2020. [DOI: 10.3389/fsufs.2020.579976] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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Specific Root Exudate Compounds Sensed by Dedicated Chemoreceptors Shape Azospirillum brasilense Chemotaxis in the Rhizosphere. Appl Environ Microbiol 2020; 86:AEM.01026-20. [PMID: 32471917 DOI: 10.1128/aem.01026-20] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2020] [Accepted: 05/20/2020] [Indexed: 12/15/2022] Open
Abstract
Plant roots shape the rhizosphere community by secreting compounds that recruit diverse bacteria. Colonization of various plant roots by the motile alphaproteobacterium Azospirillum brasilens e causes increased plant growth, root volume, and crop yield. Bacterial chemotaxis in this and other motile soil bacteria is critical for competitive colonization of the root surfaces. The role of chemotaxis in root surface colonization has previously been established by endpoint analyses of bacterial colonization levels detected a few hours to days after inoculation. More recently, microfluidic devices have been used to study plant-microbe interactions, but these devices are size limited. Here, we use a novel slide-in chamber that allows real-time monitoring of plant-microbe interactions using agriculturally relevant seedlings to characterize how bacterial chemotaxis mediates plant root surface colonization during the association of A. brasilens e with Triticum aestivum (wheat) and Medicago sativa (alfalfa) seedlings. We track A. brasilense accumulation in the rhizosphere and on the root surfaces of wheat and alfalfa. A. brasilense motile cells display distinct chemotaxis behaviors in different regions of the roots, including attractant and repellent responses that ultimately drive surface colonization patterns. We also combine these observations with real-time analyses of behaviors of wild-type and mutant strains to link chemotaxis responses to distinct chemicals identified in root exudates to specific chemoreceptors that together explain the chemotactic response of motile cells in different regions of the roots. Furthermore, the bacterial second messenger c-di-GMP modulates these chemotaxis responses. Together, these findings illustrate dynamic bacterial chemotaxis responses to rhizosphere gradients that guide root surface colonization.IMPORTANCE Plant root exudates play critical roles in shaping rhizosphere microbial communities, and the ability of motile bacteria to respond to these gradients mediates competitive colonization of root surfaces. Root exudates are complex chemical mixtures that are spatially and temporally dynamic. Identifying the exact chemical(s) that mediates the recruitment of soil bacteria to specific regions of the roots is thus challenging. Here, we connect patterns of bacterial chemotaxis responses and sensing by chemoreceptors to chemicals found in root exudate gradients and identify key chemical signals that shape root surface colonization in different plants and regions of the roots.
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Plasmid gene for putative integral membrane protein affects formation of lipopolysaccharide and motility in Azospirillum brasilense Sp245. Folia Microbiol (Praha) 2020; 65:963-972. [PMID: 32607666 DOI: 10.1007/s12223-020-00805-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2020] [Accepted: 06/17/2020] [Indexed: 10/24/2022]
Abstract
The bacterium Azospirillum brasilense can swim and swarm owing to the work of polar and lateral flagella. Its major surface glycopolymers consist of lipopolysaccharides (LPS) and Calcofluor-binding polysaccharides (Cal+ phenotype). Motility and surface glycopolymers are important for the interactions of plant-associated bacteria with plants. The facultative plant endophyte A. brasilense Sp245 produces two antigenically different LPS, LpsI, and LpsII, containing identical O-polysaccharides. Previously, using vector pJFF350 for random Omegon-Km mutagenesis, we constructed a mutant of Sp245 named KM018 that still possessed flagella, although paralyzed. The mutant was no longer able to produce Calcofluor-binding polysaccharides and LpsII. Because of the limited experimental data on the genetic aspects of surface glycopolymer production and flagellar motility in azospirilla, the aim of this study was to identify and examine in more detail the coding sequence of strain Sp245, inactivated in the mutant. We found that pJFF350 was integrated into a coding sequence for a putative integral membrane protein of unknown function (AZOBR_p60025) located in the sixth plasmid of Sp245. To clarify the role of the putative protein, we cloned AZOBR_p60025 in the expression vector pRK415 and used it for the genetic complementation of mutant KM018. The SDS-PAGE, immunodiffusion, and linear immunoelectrophoresis analyses showed that in strain KM018 (pRK415-p60025), the wild-type LpsI+ LpsII+ profile was restored. The complemented mutant had a Cal+ phenotype and it was capable of swimming and swarming motility. Thus, the AZOBR_p60025-encoded protein significantly affects the composition of the major cell-surface glycopolymers and the single-cell and social motility of azospirilla.
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Galindo FS, Filho MCMT, Buzetti S, Rodrigues WL, Fernandes GC, Boleta EHM, Neto MB, Pereira MRDA, Rosa PAL, Pereira ÍT, Gaspareto RN. Influence of Azospirillum brasilense associated with silicon and nitrogen fertilization on macronutrient contents in corn. OPEN AGRICULTURE 2020. [DOI: 10.1515/opag-2020-0013] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
Abstract
Information regarding the interaction between biological nitrogen fixation (BNF) with Azospirillum brasilense inoculation and the use of silicon (Si) is needed. Silicon exerts numerous benefits on grasses, especially when the plants are subjected to biotic and abiotic stresses, affecting plant nutrition. The aim of this research was to determine if there is a synergistic effect between the inoculation with A. brasilense and Si use, on macro-nutrient content in corn shoot and root. The field trial was performed in Selvíria, Brazil, on a Typic Rhodic Hapludox soil under no-till system. The experimental design was a completely randomized block design with four replicates arranged in a 2 × 5 × 2 triple factorial arrangement, consisting of two soil acidity corrective sources (dolomitic limestone and Ca and Mg silicate as sources of Si); five N doses (0, 50, 100, 150 and 200 kg ha-1 applied in topdressing); with and without seed inoculation with A. brasilense. The inoculation favored N concentration in shoots and increased the N and S concentration even when associated to high N rates in topdressing. The Si as Ca and Mg silicate associated with the increment of N rates does not promote an increase in the macronutrients uptake. Although it did not favor the N use, the Si also did not negatively affect the benefits of the A. brasilense.
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Affiliation(s)
- Fernando Shintate Galindo
- Department of Plant Health, Rural Engineering, and Soils, Faculdade de Engenharia de Ilha Solteira, Universidade Estadual Paulista “Júlio de Mesquita Filho” , Ilha Solteira , Sao Paulo State, Zip Code 15385-000 , Brazil
| | - Marcelo Carvalho Minhoto Teixeira Filho
- Department of Plant Health, Rural Engineering, and Soils, Faculdade de Engenharia de Ilha Solteira, Universidade Estadual Paulista “Júlio de Mesquita Filho” , Ilha Solteira , Sao Paulo State, Zip Code 15385-000 , Brazil
| | - Salatiér Buzetti
- Department of Plant Health, Rural Engineering, and Soils, Faculdade de Engenharia de Ilha Solteira, Universidade Estadual Paulista “Júlio de Mesquita Filho” , Ilha Solteira , Sao Paulo State, Zip Code 15385-000 , Brazil
| | - Willian Lima Rodrigues
- Department of Plant Health, Rural Engineering, and Soils, Faculdade de Engenharia de Ilha Solteira, Universidade Estadual Paulista “Júlio de Mesquita Filho” , Ilha Solteira , Sao Paulo State, Zip Code 15385-000 , Brazil
| | - Guilherme Carlos Fernandes
- Department of Plant Health, Rural Engineering, and Soils, Faculdade de Engenharia de Ilha Solteira, Universidade Estadual Paulista “Júlio de Mesquita Filho” , Ilha Solteira , Sao Paulo State, Zip Code 15385-000 , Brazil
| | - Eduardo Henrique Marcandalli Boleta
- Department of Plant Health, Rural Engineering, and Soils, Faculdade de Engenharia de Ilha Solteira, Universidade Estadual Paulista “Júlio de Mesquita Filho” , Ilha Solteira , Sao Paulo State, Zip Code 15385-000 , Brazil
| | - Maurício Barco Neto
- Department of Plant Health, Rural Engineering, and Soils, Faculdade de Engenharia de Ilha Solteira, Universidade Estadual Paulista “Júlio de Mesquita Filho” , Ilha Solteira , Sao Paulo State, Zip Code 15385-000 , Brazil
| | - Maikon Richer de Azambuja Pereira
- Department of Plant Health, Rural Engineering, and Soils, Faculdade de Engenharia de Ilha Solteira, Universidade Estadual Paulista “Júlio de Mesquita Filho” , Ilha Solteira , Sao Paulo State, Zip Code 15385-000 , Brazil
| | - Poliana Aparecida Leonel Rosa
- Department of Plant Health, Rural Engineering, and Soils, Faculdade de Engenharia de Ilha Solteira, Universidade Estadual Paulista “Júlio de Mesquita Filho” , Ilha Solteira , Sao Paulo State, Zip Code 15385-000 , Brazil
| | - Íngrid Torres Pereira
- Department of Plant Health, Rural Engineering, and Soils, Faculdade de Engenharia de Ilha Solteira, Universidade Estadual Paulista “Júlio de Mesquita Filho” , Ilha Solteira , Sao Paulo State, Zip Code 15385-000 , Brazil
| | - Rafaela Neris Gaspareto
- Department of Plant Health, Rural Engineering, and Soils, Faculdade de Engenharia de Ilha Solteira, Universidade Estadual Paulista “Júlio de Mesquita Filho” , Ilha Solteira , Sao Paulo State, Zip Code 15385-000 , Brazil
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Azospirillum brasilense viable cells enumeration using propidium monoazide-quantitative PCR. Arch Microbiol 2020; 202:1653-1662. [DOI: 10.1007/s00203-020-01877-0] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2019] [Revised: 01/23/2020] [Accepted: 04/01/2020] [Indexed: 01/05/2023]
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Sigida EN, Kokoulin MS, Dmitrenok PS, Grinev VS, Fedonenko YP, Konnova SA. The Structure of the O-Specific Polysaccharide and Lipid A of the Type Strain Azospirillum rugosum DSM-19657. RUSSIAN JOURNAL OF BIOORGANIC CHEMISTRY 2020. [DOI: 10.1134/s1068162020010112] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Tugarova AV, Mamchenkova PV, Khanadeev VA, Kamnev AA. Selenite reduction by the rhizobacterium Azospirillum brasilense, synthesis of extracellular selenium nanoparticles and their characterisation. N Biotechnol 2020; 58:17-24. [PMID: 32184193 DOI: 10.1016/j.nbt.2020.02.003] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2018] [Revised: 02/24/2020] [Accepted: 02/29/2020] [Indexed: 01/25/2023]
Abstract
Microbial reduction of selenium oxyanions has attracted attention in recent years. In this study, an original and simple method for the synthesis of extracellular selenium nanoparticles (Se NPs) of relatively uniform size has been developed using strains Sp7 and Sp245 of the ubiquitous plant-growth promoting rhizobacterium Azospirillum brasilense, both capable of selenite (SeO32-) reduction. In addition, a reliable purification protocol for the recovery of the Se NPs has been perfected, which could be applied with minor modifications to cultures of other microbial species. Importantly, it was found that, by changing the conditions of bacterial reduction of selenite, extracellularly localised Se NPs can be obtained using bacteria which would otherwise produce intracellular Se NPs. In particular, bacterial cultures grown up to the end of the logarithmic growth phase, washed free of culture medium and then incubated with selenite, were used to obtain extracellular Se NPs. Their sizes depended on the initial selenite concentration (∼25-80 nm in diameter at 50-10 mM selenite, respectively). The Se NPs obtained were characterised by transmission electron microscopy (TEM), dynamic light scattering, as well as Raman and UV-vis spectroscopies. Their zeta potential was found to be negative (ca. minus 21-24 mV). Bacterial selenite reduction was also studied in the presence of the efflux pump inhibitor carbonyl cyanide m-chlorophenylhydrazone (CCCP). In this case, TEM indicated the formation only of intracellular selenium crystallites. The data show that the formation of extracellular Se NPs requires normal bacterial metabolic activity, while CCCP evidently blocks the membrane export of Se0 nuclei.
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Affiliation(s)
- Anna V Tugarova
- Laboratory of Biochemistry, Institute of Biochemistry and Physiology of Plants and Microorganisms, Russian Academy of Sciences, 13 Prosp. Entuziastov, 410049, Saratov, Russia.
| | - Polina V Mamchenkova
- Laboratory of Biochemistry, Institute of Biochemistry and Physiology of Plants and Microorganisms, Russian Academy of Sciences, 13 Prosp. Entuziastov, 410049, Saratov, Russia
| | - Vitaly A Khanadeev
- Laboratory of Nanobiotechnology, Institute of Biochemistry and Physiology of Plants and Microorganisms, Russian Academy of Sciences, 13 Prosp. Entuziastov, 410049, Saratov, Russia
| | - Alexander A Kamnev
- Laboratory of Biochemistry, Institute of Biochemistry and Physiology of Plants and Microorganisms, Russian Academy of Sciences, 13 Prosp. Entuziastov, 410049, Saratov, Russia.
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Valette M, Rey M, Gerin F, Comte G, Wisniewski-Dyé F. A common metabolomic signature is observed upon inoculation of rice roots with various rhizobacteria. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2020; 62:228-246. [PMID: 30920733 DOI: 10.1111/jipb.12810] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2018] [Accepted: 03/20/2019] [Indexed: 05/21/2023]
Abstract
Plant growth-promoting rhizobacteria (PGPR), whose growth is stimulated by root exudates, are able to improve plant growth and health. Among those, bacteria of the genus Azospirillum were shown to affect root secondary metabolite content in rice and maize, sometimes without visible effects on root architecture. Transcriptomic studies also revealed that expression of several genes involved in stress and plant defense was affected, albeit with fewer genes when a strain was inoculated onto its original host cultivar. Here, we investigated, via a metabolic profiling approach, whether rice roots responded differently and with gradual intensity to various PGPR, isolated from rice or not. A common metabolomic signature of nine compounds was highlighted, with the reduced accumulation of three alkylresorcinols and increased accumulation of two hydroxycinnamic acid amides (HCAA), identified as N-p-coumaroylputrescine and N-feruloylputrescine. This was accompanied by the increased transcription of two genes involved in the N-feruloylputrescine biosynthetic pathway. Interestingly, exposure to a rice bacterial pathogen triggered a reduced accumulation of these HCAA in roots, a result contrasting with previous reports of increased HCAA content in leaves upon pathogen infection. Accumulation of HCAA, that are potential antimicrobial compounds, might be considered as a primary reaction of plant to bacterial perception.
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Affiliation(s)
- Marine Valette
- Université de Lyon, Université Lyon1, Ecologie Microbienne, CNRS UMR-5557, INRA UMR-1418, VetAgroSup, 43 boulevard du 11 novembre 1918, 69622, Villeurbanne, France
| | - Marjolaine Rey
- Université de Lyon, Université Lyon1, Ecologie Microbienne, CNRS UMR-5557, INRA UMR-1418, VetAgroSup, 43 boulevard du 11 novembre 1918, 69622, Villeurbanne, France
| | - Florence Gerin
- Université de Lyon, Université Lyon1, Ecologie Microbienne, CNRS UMR-5557, INRA UMR-1418, VetAgroSup, 43 boulevard du 11 novembre 1918, 69622, Villeurbanne, France
| | - Gilles Comte
- Université de Lyon, Université Lyon1, Ecologie Microbienne, CNRS UMR-5557, INRA UMR-1418, VetAgroSup, 43 boulevard du 11 novembre 1918, 69622, Villeurbanne, France
| | - Florence Wisniewski-Dyé
- Université de Lyon, Université Lyon1, Ecologie Microbienne, CNRS UMR-5557, INRA UMR-1418, VetAgroSup, 43 boulevard du 11 novembre 1918, 69622, Villeurbanne, France
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Shelud’ko AV, Mokeev DI, Evstigneeva SS, Filip’echeva YA, Burov AM, Petrova LP, Ponomareva EG, Katsy EI. Cell Ultrastructure in Azospirillum brasilense Biofilms. Microbiology (Reading) 2020. [DOI: 10.1134/s0026261720010142] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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Kour D, Rana KL, Yadav AN, Yadav N, Kumar M, Kumar V, Vyas P, Dhaliwal HS, Saxena AK. Microbial biofertilizers: Bioresources and eco-friendly technologies for agricultural and environmental sustainability. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2020. [DOI: 10.1016/j.bcab.2019.101487] [Citation(s) in RCA: 39] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
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Hartmann A, Fischer D, Kinzel L, Chowdhury SP, Hofmann A, Baldani JI, Rothballer M. Assessment of the structural and functional diversities of plant microbiota: Achievements and challenges - A review. J Adv Res 2019; 19:3-13. [PMID: 31341665 PMCID: PMC6629839 DOI: 10.1016/j.jare.2019.04.007] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2019] [Revised: 04/23/2019] [Accepted: 04/24/2019] [Indexed: 12/28/2022] Open
Abstract
Analyses of the spatial localization and the functions of bacteria in host plant habitats through in situ identification by immunological and molecular genetic techniques combined with high resolving microscopic tools and 3D-image analysis contributed substantially to a better understanding of the functional interplay of the microbiota in plants. Among the molecular genetic methods, 16S-rRNA genes were of central importance to reconstruct the phylogeny of newly isolated bacteria and to localize them in situ. However, they usually do not allow resolution for phylogenetic affiliations below genus level. Especially, the separation of opportunistic human pathogens from plant beneficial strains, currently allocated to the same species, needs genome-based resolving techniques. Whole bacterial genome sequences allow to discriminate phylogenetically closely related strains. In addition, complete genome sequences enable strain-specific monitoring for biotechnologically relevant strains. In this mini-review we present high resolving approaches for analysis of the composition and key functions of plant microbiota, focusing on interactions of diazotrophic plant growth promoting bacteria, like Azospirillum brasilense, with non-legume host plants. Combining high resolving microscopic analyses with specific immunological detection methods and molecular genetic tools, including especially transcriptome analyses of both the bacterial and plant partners, enables new insights into key traits of beneficial bacteria-plant interactions in holobiontic systems.
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Affiliation(s)
- Anton Hartmann
- Ludwig-Maximilians-Universität (LMU) München, Faculty of Biology, Host-Microbe interactions, Großhaderner Str. 2-4, D-82152 Martinsried, Germany
| | - Doreen Fischer
- Research Unit Comparative Microbiome Analysis, Helmholtz Zentrum München, German Research Center for Environmental Health, Ingolstaedter Landstr. 1, D-85764 Neuherberg, Munich, Germany
| | - Linda Kinzel
- Research Unit Microbe-Plant Interactions, Helmholtz Zentrum München, German Research Center for Environmental Health, Ingolstaedter Landstr. 1, D-85764 Neuherberg, Munich, Germany
| | - Soumitra Paul Chowdhury
- Institute of Network Biology, Helmholtz Zentrum München, German Research Center for Environmental Health, Ingolstaedter Landstr. 1, D-85764 Neuherberg, Munich, Germany
| | - Andreas Hofmann
- EMBRAPA-Agrobiologia, Br 465, Km 07, Seropédica–RJ–CEP 23891-000, Brazil
| | - Jose Ivo Baldani
- EMBRAPA-Agrobiologia, Br 465, Km 07, Seropédica–RJ–CEP 23891-000, Brazil
| | - Michael Rothballer
- Institute of Network Biology, Helmholtz Zentrum München, German Research Center for Environmental Health, Ingolstaedter Landstr. 1, D-85764 Neuherberg, Munich, Germany
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Liu X, Chen Z, Gao Y, Liu Q, Zhou W, Zhao T, Jiang W, Cui X, Cui J, Wang Q. Combinative effects of Azospirillum brasilense inoculation and chemical priming on germination behavior and seedling growth in aged grass seeds. PLoS One 2019; 14:e0210453. [PMID: 31063499 PMCID: PMC6504077 DOI: 10.1371/journal.pone.0210453] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2018] [Accepted: 04/23/2019] [Indexed: 01/03/2023] Open
Abstract
Germination of seeds during the transportation or after prolonged storage naturally and inevitably decreases because of ageing, but germination potential can be partially restored with seed priming treatments. A novel attempt was made to investigate the effects of combined treatments and to optimize the conditions for naturally aged seeds of tall fescue (Festuca arundinacea Schreb.), orchardgrass (Dactylis glomerata L.) and Russian wild rye (Psathyrostachys juncea (Fisch.) Nevski) using an orthogonal activity level experimental design [factor A: Azospirillum brasilense concentration, factor B: three seed priming treatments (H2O, MgSO4 and H2O2) and factor C: different priming times]. Multivariate regression model analysis was applied to determine the interactive effects of pairwise factors (A and C) and to optimize experimental conditions. The results showed that the mixed treatments positively affected seed germination and seedling growth. The three seed priming treatments were the dominant factors for germination promotion, whereas the bacterial concentration had the largest effect on seedling growth and the activity of superoxide dismutase (SOD), especially root elongation. The malondialdehyde content was reduced, the activities of SOD, peroxidase and catalase were triggered, and ascorbate peroxidase activity was also affected by the co-treatment. The combined results of all determined attributes showed that A. brasilense bio-priming with H2O2 priming constituted the optimal combination. The optimal bacterial concentration of A. brasilense and the time of seed priming were 52.3 × 106 colony forming units (CFU) mL-1 and 17.0 h, respectively.
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Affiliation(s)
- Xu Liu
- Department of Grassland Science, College of Animal Sci. and Techn., Northwest A&F University, Yangling, Shaanxi Province, China
| | - Zhao Chen
- Department of Grassland Science, College of Animal Sci. and Techn., Northwest A&F University, Yangling, Shaanxi Province, China
| | - Yani Gao
- Department of Grassland Science, College of Animal Sci. and Techn., Northwest A&F University, Yangling, Shaanxi Province, China
| | - Qian Liu
- Department of Grassland Science, College of Animal Sci. and Techn., Northwest A&F University, Yangling, Shaanxi Province, China
| | - Wennan Zhou
- Department of Grassland Science, College of Animal Sci. and Techn., Northwest A&F University, Yangling, Shaanxi Province, China
| | - Tian Zhao
- Department of Grassland Science, College of Animal Sci. and Techn., Northwest A&F University, Yangling, Shaanxi Province, China
| | - Wenbo Jiang
- Department of Grassland Science, College of Animal Sci. and Techn., Northwest A&F University, Yangling, Shaanxi Province, China
| | - Xuewen Cui
- Department of Grassland Science, College of Animal Sci. and Techn., Northwest A&F University, Yangling, Shaanxi Province, China
| | - Jian Cui
- Department of Plant Science, College of Life Science, Northwest A&F University, Yangling, Shaanxi Province, China
| | - Quanzhen Wang
- Department of Grassland Science, College of Animal Sci. and Techn., Northwest A&F University, Yangling, Shaanxi Province, China
- * E-mail:
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Defining the Genetic Basis of Plant⁻Endophytic Bacteria Interactions. Int J Mol Sci 2019; 20:ijms20081947. [PMID: 31010043 PMCID: PMC6515357 DOI: 10.3390/ijms20081947] [Citation(s) in RCA: 60] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2019] [Revised: 04/17/2019] [Accepted: 04/18/2019] [Indexed: 01/17/2023] Open
Abstract
Endophytic bacteria, which interact closely with their host, are an essential part of the plant microbiome. These interactions enhance plant tolerance to environmental changes as well as promote plant growth, thus they have become attractive targets for increasing crop production. Numerous studies have aimed to characterise how endophytic bacteria infect and colonise their hosts as well as conferring important traits to the plant. In this review, we summarise the current knowledge regarding endophytic colonisation and focus on the insights that have been obtained from the mutants of bacteria and plants as well as ‘omic analyses. These show how endophytic bacteria produce various molecules and have a range of activities related to chemotaxis, motility, adhesion, bacterial cell wall properties, secretion, regulating transcription and utilising a substrate in order to establish a successful interaction. Colonisation is mediated by plant receptors and is regulated by the signalling that is connected with phytohormones such as auxin and jasmonic (JA) and salicylic acids (SA). We also highlight changes in the expression of small RNAs and modifications of the cell wall properties. Moreover, in order to exploit the beneficial plant-endophytic bacteria interactions in agriculture successfully, we show that the key aspects that govern successful interactions remain to be defined.
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Structural studies of O-specific polysaccharide(s) and biological activity toward plants of the lipopolysaccharide from Azospirillum brasilense SR8. Int J Biol Macromol 2019; 126:246-253. [PMID: 30590146 DOI: 10.1016/j.ijbiomac.2018.12.229] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2018] [Revised: 12/19/2018] [Accepted: 12/22/2018] [Indexed: 11/22/2022]
Abstract
Lipopolysaccharide (LPS) was extracted from dry bacterial cells of plant-growth-promoting bacterium Azospirillum brasilense SR8 (IBPPM 5). The O-specific polysaccharide (OPS) was obtained by mild acid hydrolysis of the lipopolysaccharide and studied by sugar analysis, 1H and 13C NMR spectroscopy, including 1H,1H COSY, TOCSY, ROESY, and 1H,13C HSQC and HMBC experiments, computational NMR-based structure analysis, and Smith degradation. The OPS was shown to contain two types of repeating units of the following structure: Both OPS structures are present in A. brasilense 54, from which structure 1 has been reported earlier (Fedonenko et al., 2011), whereas to our knowledge structure 2 has not been hitherto found in bacterial saccharides. Treatment of wheat seedling roots with LPS of A. brasilense SR8 increased the number of root hair deformations as compared to seedlings grown without LPS, but had no effect on adsorption of the bacteria to the root surface. A. brasilense SR8 was able to utilize LPS of several structurally related Azospirillum strains.
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Shintate Galindo F, Teixeira Filho MCM, Buzetti S, Rodrigues WL, Fernandes GC, Marcandalli Boleta EH, Barco Neto M, Campos Biagini AL, Bianchi Baratella E, Silva de Souza J. Nitrogen rates associated with the inoculation of Azospirillum brasilense and application of Si: Effects on micronutrients and silicon concentration in irrigated corn. OPEN AGRICULTURE 2018. [DOI: 10.1515/opag-2018-0056] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
Abstract
The aim of this study was to analyze whether there are differences between the inoculation with Azospirillum brasilense and the silicon application, thus enabling a higher efficiency of nitrogen fertilization, evaluating micronutrients and silicon concentration in shoots and roots of irrigated corn (Zea mays). The experiment was conducted in Selviria, Brazil, under a no-till system, on a Typic Rhodic Hapludox. The experiment was set up as a randomized block design with four replications, in a 2 × 5 × 2 factorial arrangement consisting of two soil corrective sources (dolomitic limestone and Ca and Mg silicate as source of Si); five N rates (0, 50, 100, 150 and 200 kg ha-1); with and without inoculation with A. brasilense. N rates increased B, Cu and Fe concentrations in shoots and B, Cu, Fe, Mn, Zn and Si in roots. Inoculation provided greater concentrations of B and Fe in shoots, and B in roots. Although inoculation with A. brasilense favored micronutrient uptake, it negatively affected Si concentration in shoots in 2015/16 crop. The use of Si in the form of Ca and Mg silicate promotes an increase in Mn, Si and Zn uptake in shoots and Mn and Si concentration in roots.
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Modulation of nitrogen metabolism of maize plants inoculated with Azospirillum brasilense and Herbaspirillum seropedicae. Arch Microbiol 2018; 201:547-558. [PMID: 30448870 DOI: 10.1007/s00203-018-1594-z] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2018] [Revised: 08/02/2018] [Accepted: 11/09/2018] [Indexed: 10/27/2022]
Abstract
Maize is highly responsive to the application of nitrogen to achieve high productivity. Inoculation with diazotrophic bacteria can improve plant growth with low N fertilization. The objective was to evaluate the inoculation of two species of diazotrophs on N metabolism in maize plants, in the presence of two concentrations of nitrogen in a hydroponic system. A factorial arrangement composed of two N levels (3.0 and 0.3 mM), with the presence of Hs-Herbaspirillum seropedicae, and Ab-Azospirillum brasilense or not. The parameters used were dry mass; N, P, and K accumulation; nitrate reductase activity; soluble fractions in roots and leaves. The inoculation altered the N metabolism and promoted greater development of maize plants, as well as a higher accumulation of P and K in the shoots. A more intensive process of N assimilation was evidenced when the plants were inoculated with H. seropedicae, leading to increased levels of NO3- and reduced N-amino, sugars, and NH4+ in leaves associated with high N level, opposite of A. brasilense.
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49
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Li X, Jousset A, de Boer W, Carrión VJ, Zhang T, Wang X, Kuramae EE. Legacy of land use history determines reprogramming of plant physiology by soil microbiome. ISME JOURNAL 2018; 13:738-751. [PMID: 30368524 PMCID: PMC6461838 DOI: 10.1038/s41396-018-0300-0] [Citation(s) in RCA: 95] [Impact Index Per Article: 15.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/02/2018] [Revised: 08/25/2018] [Accepted: 10/04/2018] [Indexed: 01/01/2023]
Abstract
Microorganisms associated with roots are thought to be part of the so-called extended plant phenotypes with roles in the acquisition of nutrients, production of growth hormones, and defense against diseases. Since the crops selectively enrich most rhizosphere microbes out of the bulk soil, we hypothesized that changes in the composition of bulk soil communities caused by agricultural management affect the extended plant phenotype. In the current study, we performed shotgun metagenome sequencing of the rhizosphere microbiome of the peanut (Arachis hypogaea) and metatranscriptome analysis of the roots of peanut plants grown in the soil with different management histories, peanut monocropping and crop rotation. We found that the past planting record had a significant effect on the assembly of the microbial community in the peanut rhizosphere, indicating a soil memory effect. Monocropping resulted in a reduction of the rhizosphere microbial diversity, an enrichment of several rare species, and a reduced representation of traits related to plant performance, such as nutrients metabolism and phytohormone biosynthesis. Furthermore, peanut plants in monocropped soil exhibited a significant reduction in growth coinciding with a down-regulation of genes related to hormone production, mainly auxin and cytokinin, and up-regulation of genes related to the abscisic acid, salicylic acid, jasmonic acid, and ethylene pathways. These findings suggest that land use history affects crop rhizosphere microbiomes and plant physiology.
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Affiliation(s)
- Xiaogang Li
- CAS Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China.,Department of Microbial Ecology, Netherlands Institute of Ecology, NIOO-KNAW, Wageningen, 6708 PB, The Netherlands
| | - Alexandre Jousset
- Institute for Environmental Biology, Ecology & Biodiversity, Utrecht University, Utrecht, 3584 CH, The Netherlands
| | - Wietse de Boer
- Department of Microbial Ecology, Netherlands Institute of Ecology, NIOO-KNAW, Wageningen, 6708 PB, The Netherlands.,Soil Biology Group, Wageningen University, Wageningen, 6708 PB, The Netherlands
| | - Víctor J Carrión
- Department of Microbial Ecology, Netherlands Institute of Ecology, NIOO-KNAW, Wageningen, 6708 PB, The Netherlands
| | - Taolin Zhang
- CAS Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Xingxiang Wang
- CAS Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China. .,Experimental Station of Red Soil, Chinese Academy of Sciences, Yingtan, 335211, China.
| | - Eiko E Kuramae
- Department of Microbial Ecology, Netherlands Institute of Ecology, NIOO-KNAW, Wageningen, 6708 PB, The Netherlands
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50
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Shelud'ko AV, Filip'echeva YA, Telesheva EM, Yevstigneyeva SS, Petrova LP, Katsy EI. Restoration of polar-flagellum motility and biofilm-forming capacity in the mmsB1 mutant of the alphaproteobacterium Azospirillum brasilense Sp245 points to a new role for a homologue of 3-hydroxyisobutyrate dehydrogenase. Can J Microbiol 2018; 65:144-154. [PMID: 30336067 DOI: 10.1139/cjm-2018-0481] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
The bacterium Azospirillum brasilense can swim and swarm owing to the rotation of a constitutive polar flagellum (Fla) and inducible lateral flagella, respectively. They also form biofilms on various interfaces. Experimental data on flagellar assembly and social behaviours in these bacteria are scarce. Here, for the first time, the chromosomal coding sequence mmsB1 for a homologue of 3-hydroxyisobutyrate dehydrogenase (protein accession Nos. ADT80774 and E7CWE2) was shown to play a role in the assembly of motile Fla and in biofilm biomass accumulation. In the previously obtained mutant SK039 of A. brasilense Sp245, an Omegon-Km insertion in mmsB1 was concurrent with changes in cell-surface properties and with suppression of Fla assembly (partial) and Fla-dependent motility (complete). Here, the immotile leaky Fla- mutant SK039 was complemented with the expression vector pRK415-borne mmsB1 gene of Sp245. In the complemented mutant, the elevated relative cell hydrophobicity and changed relative membrane fluidity of SK039 returned to the wild-type levels; also, biofilm biomass accumulation increased and even reached Sp245's levels under nutritionally rich conditions. In strain SK039 (pRK415-mmsB1), the percentage of cells with Fla became significantly higher than that in mutant SK039, and the Fla-driven swimming velocity was equal to that in strain Sp245.
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Affiliation(s)
- Andrei V Shelud'ko
- Institute of Biochemistry and Physiology of Plants and Microorganisms, Russian Academy of Sciences, Prospekt Entuziastov, 13, 410049 Saratov, Russia.,Institute of Biochemistry and Physiology of Plants and Microorganisms, Russian Academy of Sciences, Prospekt Entuziastov, 13, 410049 Saratov, Russia
| | - Yulia A Filip'echeva
- Institute of Biochemistry and Physiology of Plants and Microorganisms, Russian Academy of Sciences, Prospekt Entuziastov, 13, 410049 Saratov, Russia.,Institute of Biochemistry and Physiology of Plants and Microorganisms, Russian Academy of Sciences, Prospekt Entuziastov, 13, 410049 Saratov, Russia
| | - Elizaveta M Telesheva
- Institute of Biochemistry and Physiology of Plants and Microorganisms, Russian Academy of Sciences, Prospekt Entuziastov, 13, 410049 Saratov, Russia.,Institute of Biochemistry and Physiology of Plants and Microorganisms, Russian Academy of Sciences, Prospekt Entuziastov, 13, 410049 Saratov, Russia
| | - Stella S Yevstigneyeva
- Institute of Biochemistry and Physiology of Plants and Microorganisms, Russian Academy of Sciences, Prospekt Entuziastov, 13, 410049 Saratov, Russia.,Institute of Biochemistry and Physiology of Plants and Microorganisms, Russian Academy of Sciences, Prospekt Entuziastov, 13, 410049 Saratov, Russia
| | - Lilia P Petrova
- Institute of Biochemistry and Physiology of Plants and Microorganisms, Russian Academy of Sciences, Prospekt Entuziastov, 13, 410049 Saratov, Russia.,Institute of Biochemistry and Physiology of Plants and Microorganisms, Russian Academy of Sciences, Prospekt Entuziastov, 13, 410049 Saratov, Russia
| | - Elena I Katsy
- Institute of Biochemistry and Physiology of Plants and Microorganisms, Russian Academy of Sciences, Prospekt Entuziastov, 13, 410049 Saratov, Russia.,Institute of Biochemistry and Physiology of Plants and Microorganisms, Russian Academy of Sciences, Prospekt Entuziastov, 13, 410049 Saratov, Russia
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