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Conceição TA, Santos AS, Fernandes AKC, Meireles GN, de Oliveira FA, Barbosa RM, Gaiotto FA. Guiding seed movement: environmental heterogeneity drives genetic differentiation in Plathymenia reticulata, providing insights for restoration. AOB PLANTS 2024; 16:plae032. [PMID: 38883565 PMCID: PMC11176975 DOI: 10.1093/aobpla/plae032] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/05/2023] [Accepted: 05/28/2024] [Indexed: 06/18/2024]
Abstract
Forest and landscape restoration is one of the main strategies for overcoming the environmental crisis. This activity is particularly relevant for biodiversity-rich areas threatened by deforestation, such as tropical forests. Efficient long-term restoration requires understanding the composition and genetic structure of native populations, as well as the factors that influence these genetic components. This is because these populations serve as the seed sources and, therefore, the gene reservoirs for areas under restoration. In the present study, we investigated the influence of environmental, climatic and spatial distance factors on the genetic patterns of Plathymenia reticulata, aiming to support seed translocation strategies for restoration areas. We collected plant samples from nine populations of P. reticulata in the state of Bahia, Brazil, located in areas of Atlantic Forest and Savanna, across four climatic types, and genotyped them using nine nuclear and three chloroplast microsatellite markers. The populations of P. reticulata evaluated generally showed low to moderate genotypic variability and low haplotypic diversity. The populations within the Savanna phytophysiognomy showed values above average for six of the eight evaluated genetic diversity parameters. Using this classification based on phytophysiognomy demonstrated a high predictive power for genetic differentiation in P. reticulata. Furthermore, the interplay of climate, soil and geographic distance influenced the spread of alleles across the landscape. Based on our findings, we propose seed translocation, taking into account the biome, with restricted use of seed sources acquired or collected from the same environment as the areas to be restored (Savanna or Atlantic Forest).
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Affiliation(s)
- Taise Almeida Conceição
- Escola Superior de Agricultura Luiz de Queiroz, Universidade de São Paulo, USP, Piracicaba, São Paulo 13418-900, Brazil
| | - Alesandro Souza Santos
- Laboratório de Marcadores Moleculares, Centro de Biotecnologia e Genética, Universidade Estadual de Santa Cruz, Rodovia Ilhéus-Itabuna, km 16, Ilhéus, Bahia 45662-900, Brazil
- Laboratório de Ecologia Aplicada à Conservação, Programa de Pós-Graduação em Ecologia e Conservação da Biodiversidade, Universidade Estadual de Santa Cruz, Rodovia Ilhéus-Itabuna, km 16, Ilhéus, Bahia 45662-900, Brazil
| | - Ane Karoline Campos Fernandes
- Laboratório de Marcadores Moleculares, Centro de Biotecnologia e Genética, Universidade Estadual de Santa Cruz, Rodovia Ilhéus-Itabuna, km 16, Ilhéus, Bahia 45662-900, Brazil
| | - Gabriela Nascimento Meireles
- Laboratório de Marcadores Moleculares, Centro de Biotecnologia e Genética, Universidade Estadual de Santa Cruz, Rodovia Ilhéus-Itabuna, km 16, Ilhéus, Bahia 45662-900, Brazil
| | - Fernanda Ancelmo de Oliveira
- Centro de Biologia Molecular e Engenharia Genética (CBMEG), Departamento de Biologia Vegetal, Instituto de Biologia, Universidade Estadual de Campinas, UNICAMP, Campinas, São Paulo 13083-875, Brazil
| | - Rafael Marani Barbosa
- Departamento de Ciências Agrárias e Ambientais, Universidade Estadual de Santa Cruz, Rodovia Ilhéus-Itabuna, km 16, Ilhéus, Bahia 45662-900, Brazil
| | - Fernanda Amato Gaiotto
- Escola Superior de Agricultura Luiz de Queiroz, Universidade de São Paulo, USP, Piracicaba, São Paulo 13418-900, Brazil
- Laboratório de Ecologia Aplicada à Conservação, Programa de Pós-Graduação em Ecologia e Conservação da Biodiversidade, Universidade Estadual de Santa Cruz, Rodovia Ilhéus-Itabuna, km 16, Ilhéus, Bahia 45662-900, Brazil
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Malaterre C. Is Life Binary or Gradual? Life (Basel) 2024; 14:564. [PMID: 38792586 PMCID: PMC11121977 DOI: 10.3390/life14050564] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2024] [Revised: 04/15/2024] [Accepted: 04/24/2024] [Indexed: 05/26/2024] Open
Abstract
The binary nature of life is deeply ingrained in daily experiences, evident in the stark distinctions between life and death and the living and the inert. While this binary perspective aligns with disciplines like medicine and much of biology, uncertainties emerge in fields such as microbiology, virology, synthetic biology, and systems chemistry, where intermediate entities challenge straightforward classification as living or non-living. This contribution explores the motivations behind both binary and non-binary conceptualizations of life. Despite the perceived necessity to unequivocally define life, especially in the context of origin of life research and astrobiology, mounting evidence indicates a gray area between what is intuitively clearly alive and what is distinctly not alive. This prompts consideration of a gradualist perspective, depicting life as a spectrum with varying degrees of "lifeness". Given the current state of science, the existence or not of a definite threshold remains open. Nevertheless, shifts in epistemic granularity and epistemic perspective influence the framing of the question, and scientific advancements narrow down possible answers: if a threshold exists, it can only be at a finer level than what is intuitively taken as living or non-living. This underscores the need for a more refined distinction between the inanimate and the living.
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Affiliation(s)
- Christophe Malaterre
- Département de Philosophie, Université du Québec à Montréal, Montreal, QC H3C 3P8, Canada;
- Centre Interuniversitaire de Recherche sur la Science et la Technologie (CIRST), Montreal, QC H3C 3P8, Canada
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Van Rossum F, Godé C, Baruca Arbeiter A, Raspé O, Simsek M, Barigand B, Hardy OJ, Bandelj D. Genetic diversity assessment of Helichrysum arenarium (Asteraceae) for the genetic restoration of declining populations. Ecol Evol 2024; 14:e10953. [PMID: 38371858 PMCID: PMC10869947 DOI: 10.1002/ece3.10953] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2023] [Revised: 11/14/2023] [Accepted: 12/04/2023] [Indexed: 02/20/2024] Open
Abstract
Helichrysum arenarium (L.) Moench (Asteraceae) is a self-compatible, insect-pollinated herb occurring in sand grasslands, and is declining and endangered in many parts of its European distribution range. A recovery plan of H. arenarium has been conducted in southern Belgium, involving plant translocations. We developed multiplex genotyping protocol for nine microsatellite markers previously published for Helichrysum italicum and two newly developed microsatellite markers for H. arenarium. Eleven polymorphic loci were associated (pooled) in two multiplex panels, to assess the genetic status of the only small remaining population in Belgium and of three large German populations used as seed source for propagating transplants. The small Belgian population was characterized by high clonality, with only two, however heterozygous, genets detected. The three large German populations showed high genetic diversity (H e ranging from 0.635 to 0.670) and no significant inbreeding coefficient values, despite expectations of geitonogamous selfing. Management practices (grazing livestock) increasing seed dispersal distances, inbreeding depression at early stages of development, and mechanisms preventing or delaying selfing might be hypothesized to explain the observed patterns. The two Belgian genotypes remained within genetic variation range of German populations so that the high genetic differentiation between Belgian and German populations (F ST values ranging from 0.186 to 0.206) likely resulted from genetic drift effects and small sample size. Transplants obtained from seeds sampled from the three large source populations from Germany constitute a highly diverse, noninbred gene pool, and are thus of high genetic quality for plant translocations.
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Affiliation(s)
- Fabienne Van Rossum
- Meise Botanic GardenMeiseBelgium
- Service Général de l'Enseignement Supérieur et de la Recherche Scientifique, Fédération Wallonie‐BruxellesBrusselsBelgium
| | - Cécile Godé
- Univ. Lille, CNRS, UMR 8198 ‐ Evo‐Eco‐PaleoLilleFrance
| | - Alenka Baruca Arbeiter
- Faculty of Mathematics, Natural Sciences and Information TechnologiesUniversity of PrimorskaKoperSlovenia
| | - Olivier Raspé
- Meise Botanic GardenMeiseBelgium
- Service Général de l'Enseignement Supérieur et de la Recherche Scientifique, Fédération Wallonie‐BruxellesBrusselsBelgium
| | - Melike Simsek
- Unit of Evolutionary Biology and EcologyUniversité Libre de BruxellesBrusselsBelgium
| | - Benjamin Barigand
- Unit of Evolutionary Biology and EcologyUniversité Libre de BruxellesBrusselsBelgium
| | - Olivier J. Hardy
- Unit of Evolutionary Biology and EcologyUniversité Libre de BruxellesBrusselsBelgium
| | - Dunja Bandelj
- Faculty of Mathematics, Natural Sciences and Information TechnologiesUniversity of PrimorskaKoperSlovenia
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Satyaki PRV. An epigenetic clock in plants. Science 2023; 381:1416. [PMID: 37769092 DOI: 10.1126/science.adk2696] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/30/2023]
Abstract
DNA methylation can identify evolutionary relationships among close plant lineages.
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Affiliation(s)
- P R V Satyaki
- Department of Biological Sciences, University of Toronto Scarborough, Toronto, ONT, Canada
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Rosser NL, Quinton A, Davey H, Ayre DJ, Denham AJ. Genetic assessment of the value of restoration planting within an endangered eucalypt woodland. Sci Rep 2023; 13:6583. [PMID: 37085553 PMCID: PMC10121665 DOI: 10.1038/s41598-023-33720-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2022] [Accepted: 04/18/2023] [Indexed: 04/23/2023] Open
Abstract
Assessment of woodland restoration often focusses on stand demographics, but genetic factors likely influence long-term stand viability. We examined the genetic composition of Yellow Box (Eucalyptus melliodora) trees in endangered Box-Gum Grassy Woodland in SE Australia, some 30 years after planting with seeds of reportedly local provenance. Using DArT sequencing for 1406 SNPs, we compared genetic diversity and population structure of planted E. melliodora trees with remnant bushland trees, paddock trees and natural recruits. Genetic patterns imply that natural stands and paddock trees had historically high gene flow (among group pairwise FST = 0.04-0.10). Genetic diversity was highest among relictual paddock trees (He = 0.17), while diversity of revegetated trees was identical to natural bushland trees (He = 0.14). Bayesian clustering placed the revegetated trees into six genetic groups with four corresponding to genotypes from paddock trees, indicating that revegetated stands are mainly of genetically diverse, local provenance. Natural recruits were largely derived from paddock trees with some contribution from planted trees. A few trees have likely hybridised with other local eucalypt species which are unlikely to compromise stand integrity. We show that paddock trees have high genetic diversity and capture historic genetic variety and provide important foci for natural recruitment of genetically diverse and outcrossed seedlings.
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Affiliation(s)
- Natalie L Rosser
- Centre for Sustainable Ecosystem Solutions, School of Earth, Atmospheric and Life Sciences, University of Wollongong, Wollongong, NSW, Australia
| | - Anthony Quinton
- Centre for Sustainable Ecosystem Solutions, School of Earth, Atmospheric and Life Sciences, University of Wollongong, Wollongong, NSW, Australia
| | - Huw Davey
- Independent Researcher, Wollongong, NSW, Australia
| | - David J Ayre
- Centre for Sustainable Ecosystem Solutions, School of Earth, Atmospheric and Life Sciences, University of Wollongong, Wollongong, NSW, Australia
| | - Andrew J Denham
- Centre for Sustainable Ecosystem Solutions, School of Earth, Atmospheric and Life Sciences, University of Wollongong, Wollongong, NSW, Australia.
- Science, Economics and Insights Division, NSW Department of Planning and Environment, Parramatta, NSW, Australia.
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Hanley TC, Grabowski JH, Schneider EG, Barrett PD, Puishys LM, Spadafore R, McManus G, Helt WSK, Kinney H, Conor McManus M, Randall Hughes A. Host genetic identity determines parasite community structure across time and space in oyster restoration. Proc Biol Sci 2023; 290:20222560. [PMID: 36987644 PMCID: PMC10050946 DOI: 10.1098/rspb.2022.2560] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2022] [Accepted: 02/28/2023] [Indexed: 03/30/2023] Open
Abstract
Intraspecific variation in host susceptibility to individual parasite species is common, yet how these effects scale to mediate the structure of diverse parasite communities in nature is less well understood. To address this knowledge gap, we tested how host genetic identity affects parasite communities on restored reefs seeded with juvenile oysters from different sources-a regional commercial hatchery or one of two wild progenitor lines. We assessed prevalence and intensity of three micro- and two macroparasite species for 4 years following restoration. Despite the spatial proximity of restored reefs, oyster source identity strongly predicted parasite community prevalence across all years, with sources varying in their relative susceptibility to different parasites. Oyster seed source also predicted reef-level parasite intensities across space and through time. Our results highlight that host intraspecific variation can shape parasite community structure in natural systems, and reinforce the importance of considering source identity and diversity in restoration design.
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Affiliation(s)
- Torrance C. Hanley
- Marine Science Center, Northeastern University, Nahant, MA 01908, USA
- Massachusetts Bays National Estuary Partnership, Boston, MA 02114, USA
| | | | - Eric G. Schneider
- Marine Science Center, Northeastern University, Nahant, MA 01908, USA
- Rhode Island Department of Environmental Management, Division of Marine Fisheries, Jamestown, RI 02835, USA
| | - Patrick D. Barrett
- Rhode Island Department of Environmental Management, Division of Marine Fisheries, Jamestown, RI 02835, USA
| | - Lauren M. Puishys
- Marine Science Center, Northeastern University, Nahant, MA 01908, USA
| | - Rachele Spadafore
- Marine Science Center, Northeastern University, Nahant, MA 01908, USA
| | - Gwendolyn McManus
- Marine Science Center, Northeastern University, Nahant, MA 01908, USA
| | | | - Heather Kinney
- The Nature Conservancy, Rhode Island Chapter, Providence, RI 02906, USA
| | - M. Conor McManus
- Rhode Island Department of Environmental Management, Division of Marine Fisheries, Jamestown, RI 02835, USA
| | - A. Randall Hughes
- Marine Science Center, Northeastern University, Nahant, MA 01908, USA
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Population genomics of the neotropical palm Copernicia prunifera (Miller) H. E. Moore: Implications for conservation. PLoS One 2022; 17:e0276408. [PMID: 36327224 PMCID: PMC9632875 DOI: 10.1371/journal.pone.0276408] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2022] [Accepted: 10/05/2022] [Indexed: 11/06/2022] Open
Abstract
Copernicia prunifera (Miller) H. E. Moore is a palm tree native to Brazil. The products obtained from its leaf extracts are a source of income for local families and the agroindustry. Owing to the reduction of natural habitats and the absence of a sustainable management plan, the maintenance of the natural populations of this palm tree has been compromised. Therefore, this study aimed to evaluate the diversity and genetic structure of 14 C. prunifera populations using single nucleotide polymorphisms (SNPs) identified through genotyping-by-sequencing (GBS) to provide information that contributes to the conservation of this species. A total of 1,013 SNP markers were identified, of which 84 loci showed outlier behavior and may reflect responses to natural selection. Overall, the level of genomic diversity was compatible with the biological aspects of this species. The inbreeding coefficient (f) was negative for all populations, indicating excess heterozygotes. Most genetic variations occurred within populations (77.26%), and a positive correlation existed between genetic and geographic distances. The population structure evaluated through discriminant analysis of principal components (DAPC) revealed low genetic differentiation between populations. The results highlight the need for efforts to conserve C. prunifera as well as its distribution range to preserve its global genetic diversity and evolutionary potential.
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Walters SJ, Robinson TP, Byrne M, Nevill P. Seed sourcing in the genomics era: Multispecies provenance delineation for current and future climates. Restor Ecol 2022. [DOI: 10.1111/rec.13718] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Sheree J. Walters
- ARC Centre for Mine Site Restoration, School of Molecular and Life Sciences Curtin University Bentley WA 6102 Australia
| | - Todd P. Robinson
- School of Earth and Planetary Sciences Curtin University Bentley WA 6102 Australia
| | - Margaret Byrne
- Biodiversity and Conservation Science, Department of Biodiversity Conservation and Attractions, Locked Bag 104, Bentley Delivery Centre WA 6983 Australia
- School of Molecular and Life Sciences Curtin University Bentley WA 6102 Australia
| | - Paul Nevill
- ARC Centre for Mine Site Restoration, School of Molecular and Life Sciences Curtin University Bentley WA 6102 Australia
- Trace and Environmental DNA Laboratory, School of Molecular and Life Sciences Curtin University Bentley WA 6102 Australia
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White SL, Johnson TC, Rash JM, Lubinski BA, Kazyak DC. Using genetic data to advance stream fish reintroduction science: a case study in brook trout. Restor Ecol 2022. [DOI: 10.1111/rec.13662] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- Shannon L. White
- Akima Systems Engineers, under contract to the U.S. Geological Survey Eastern Ecological Science Center 11649 Leetown Road Kearneysville West Virginia 25430 USA
| | - Thomas C. Johnson
- North Carolina Wildlife Resources Commission 645 Fish Hatchery Road Marion North Carolina 28752 USA
| | - Jacob M. Rash
- North Carolina Wildlife Resources Commission 645 Fish Hatchery Road Marion North Carolina 28752 USA
| | - Barbara A. Lubinski
- U.S. Geological Survey Eastern Ecological Science Center 11649 Leetown Road Kearneysville West Virginia 25430 USA
| | - David C. Kazyak
- U.S. Geological Survey Eastern Ecological Science Center 11649 Leetown Road Kearneysville West Virginia 25430 USA
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Abstract
Mangroves form coastal tropical forests in the intertidal zone and are an important component of shoreline protection. In comparison to other tropical forests, mangrove stands are thought to have relatively low genetic diversity with population genetic structure gradually increasing with distance along a coastline. We conducted genetic analyses of mangrove forests across a range of spatial scales; within a 400 m2 parcel comprising 181 Rhizophora mangle (red mangrove) trees, and across four sites ranging from 6-115 km apart in Honduras. In total, we successfully genotyped 269 R. mangle trees, using a panel of 677 SNPs developed with 2b-RAD methodology. Within the 400 m2 parcel, we found two distinct clusters with high levels of genetic differentiation (FST = 0.355), corresponding to trees primarily located on the seaward fringe and trees growing deeper into the forest. In contrast, there was limited genetic differentiation (FST = 0.027-0.105) across the sites at a larger scale, which had been predominantly sampled along the seaward fringe. Within the 400 m2 parcel, the cluster closest to the seaward fringe exhibited low genetic differentiation (FST = 0.014-0.043) with the other Honduran sites, but the cluster further into the forest was highly differentiated from them (FST = 0.326-0.414). These findings contradict the perception that genetic structure within mangroves forests occurs mainly along a coastline and highlights that there is greater genetic structure at fine spatial scales.
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Bertola LD, Miller SM, Williams VL, Naude VN, Coals P, Dures SG, Henschel P, Chege M, Sogbohossou EA, Ndiaye A, Kiki M, Gaylard A, Ikanda DK, Becker MS, Lindsey P. Genetic guidelines for translocations: Maintaining intraspecific diversity in the lion ( Panthera leo). Evol Appl 2022; 15:22-39. [PMID: 35126646 PMCID: PMC8792481 DOI: 10.1111/eva.13318] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2021] [Revised: 10/05/2021] [Accepted: 10/06/2021] [Indexed: 11/26/2022] Open
Abstract
Conservation translocations have become an important management tool, particularly for large wildlife species such as the lion (Panthera leo). When planning translocations, the genetic background of populations needs to be taken into account; failure to do so risks disrupting existing patterns of genetic variation, ultimately leading to genetic homogenization, and thereby reducing resilience and adaptability of the species. We urge wildlife managers to include knowledge of the genetic background of source/target populations, as well as species-wide patterns, in any management intervention. We present a hierarchical decision-making tool in which we list 132 lion populations/lion conservation units and provide information on genetic assignment, uncertainty and suitability for translocation for each source/target combination. By including four levels of suitability, from 'first choice' to 'no option', we provide managers with a range of options. To illustrate the extent of international trade of lions, and the potential disruption of natural patterns of intraspecific diversity, we mined the CITES Trade Database for estimated trade quantities of live individuals imported into lion range states during the past 4 decades. We identified 1056 recorded individuals with a potential risk of interbreeding with wild lions, 772 being captive-sourced. Scoring each of the records with our decision-making tool illustrates that only 7% of the translocated individuals were 'first choice' and 73% were 'no option'. We acknowledge that other, nongenetic factors are important in the decision-making process, and hence a pragmatic approach is needed. A framework in which source/target populations are scored based on suitability is not only relevant to lion, but also to other species of wildlife that are frequently translocated. We hope that the presented overview supports managers to include genetics in future management decisions and contributes towards conservation of the lion in its full diversity.
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Affiliation(s)
- Laura D. Bertola
- Department of BiologyUniversity of CopenhagenCopenhagenDenmark
- City College of New YorkNew YorkNew YorkUSA
| | - Susan M. Miller
- FitzPatrick Institute of African OrnithologyDSI‐NRF Centre of ExcellenceUniversity of Cape TownCape TownSouth Africa
- Institute for Communities and Wildlife in AfricaUniversity of Cape TownCape TownSouth Africa
| | - Vivienne L. Williams
- School of Animal, Plant and Environmental SciencesUniversity of the WitwatersrandJohannesburgSouth Africa
| | - Vincent N. Naude
- Institute for Communities and Wildlife in AfricaUniversity of Cape TownCape TownSouth Africa
| | - Peter Coals
- School of Animal, Plant and Environmental SciencesUniversity of the WitwatersrandJohannesburgSouth Africa
- Wildlife Conservation Research UnitUniversity of OxfordOxfordUK
| | | | | | - Monica Chege
- Institute of Environmental Sciences (CML)Leiden UniversityLeidenThe Netherlands
- Kenya Wildlife ServiceNairobiKenya
| | | | | | - Martial Kiki
- Département de Génie de l’EnvironnementUniversité d’Abomey‐CalaviCotonouBenin
| | - Angela Gaylard
- Conservation Development & Assurance DepartmentAfrican Parks NetworkJohannesburgSouth Africa
| | | | | | - Peter Lindsey
- Department of Zoology and EntomologyMammal Research InstituteUniversity of PretoriaPretoriaSouth Africa
- Environmental Futures Research InstituteGriffith UniversityNathanQueenslandAustralia
- Wildlife Conservation NetworkSan FranciscoCaliforniaUSA
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Gene Flow and Genetic Structure Reveal Reduced Diversity between Generations of a Tropical Tree, Manilkara multifida Penn., in Atlantic Forest Fragments. Genes (Basel) 2021; 12:genes12122025. [PMID: 34946973 PMCID: PMC8701937 DOI: 10.3390/genes12122025] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2021] [Revised: 11/16/2021] [Accepted: 12/03/2021] [Indexed: 12/27/2022] Open
Abstract
The Atlantic Forest remnants in southern Bahia, Brazil, contain large tree species that have suffered disturbances in recent decades. Anthropogenic activities have led to a decrease in the population of many tree species and a loss of alleles that can maintain the evolutionary fitness of their populations. This study assessed patterns of genetic diversity, spatial genetic structure, and genetic structure among Manilkara multifida Penn. populations, comparing the genetic parameters of adult and juvenile trees. In particular, we collected leaves from adults and juveniles of M. multifida in two protected areas, the Veracel Station (EVC) and the Una Biological Reserve (UBR), located in threatened Atlantic Forest fragments. We observed a substantial decay in genetic variability between generations in both areas i.e., adults’ HO values were higher (EVC = 0.720, UBR = 0.736) than juveniles’ (EVC = 0.463 and UBR = 0.560). Both juveniles and adults showed genetic structure between the two areas (θ = 0.017 for adults and θ = 0.109 for juveniles). Additionally, forest fragments indicated an unexpectedly short gene flow. Our results, therefore, highlight the pervasive effects of historical deforestation and other human disturbances on the genetic diversity of M. multifida populations within a key conservation region of the Atlantic Forest biodiversity hotspot.
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Aavik T, Träger S, Zobel M, Honnay O, Van Geel M, Bueno CG, Koorem K. The joint effect of host plant genetic diversity and arbuscular mycorrhizal fungal communities on restoration success. Funct Ecol 2021. [DOI: 10.1111/1365-2435.13914] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Tsipe Aavik
- Department of Botany Institute of Ecology and Earth Sciences University of Tartu Tartu Estonia
| | - Sabrina Träger
- Department of Botany Institute of Ecology and Earth Sciences University of Tartu Tartu Estonia
- Institute of Biology/Geobotany and Botanical Garden Martin‐Luther‐University Halle‐Wittenberg Halle (Saale) Germany
| | - Martin Zobel
- Department of Botany Institute of Ecology and Earth Sciences University of Tartu Tartu Estonia
| | - Olivier Honnay
- Plant Conservation and Population Biology Biology Department University of Leuven Heverlee Belgium
| | - Maarten Van Geel
- Plant Conservation and Population Biology Biology Department University of Leuven Heverlee Belgium
| | - C. Guillermo Bueno
- Department of Botany Institute of Ecology and Earth Sciences University of Tartu Tartu Estonia
| | - Kadri Koorem
- Department of Botany Institute of Ecology and Earth Sciences University of Tartu Tartu Estonia
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14
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Van Geel M, Aavik T, Ceulemans T, Träger S, Mergeay J, Peeters G, van Acker K, Zobel M, Koorem K, Honnay O. The role of genetic diversity and arbuscular mycorrhizal fungal diversity in population recovery of the semi-natural grassland plant species Succisa pratensis. BMC Ecol Evol 2021; 21:200. [PMID: 34740329 PMCID: PMC8570031 DOI: 10.1186/s12862-021-01928-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2021] [Accepted: 10/11/2021] [Indexed: 11/16/2022] Open
Abstract
BACKGROUND Ecosystem restoration is as a critical tool to counteract the decline of biodiversity and recover vital ecosystem services. Restoration efforts, however, often fall short of meeting their goals. Although functionally important levels of biodiversity can significantly contribute to the outcome of ecosystem restoration, they are often overlooked. One such important facet of biodiversity is within-species genetic diversity, which is fundamental to population fitness and adaptation to environmental change. Also the diversity of arbuscular mycorrhizal fungi (AMF), obligate root symbionts that regulate nutrient and carbon cycles, potentially plays a vital role in mediating ecosystem restoration outcome. In this study, we investigated the relative contribution of intraspecific population genetic diversity, AMF diversity, and their interaction, to population recovery of Succisa pratensis, a key species of nutrient poor semi natural grasslands. We genotyped 180 individuals from 12 populations of S. pratensis and characterized AMF composition in their roots, using microsatellite markers and next generation amplicon sequencing, respectively. We also investigated whether the genetic makeup of the host plant species can structure the composition of root-inhabiting AMF communities. RESULTS Our analysis revealed that population allelic richness was strongly positively correlated to relative population growth, whereas AMF richness and its interaction with population genetic diversity did not significantly contribute. The variation partitioning analysis showed that, after accounting for soil and spatial variables, the plant genetic makeup explained a small but significant part of the unique variation in AMF communities. CONCLUSIONS Our results confirm that population genetic diversity can contribute to population recovery, highlighting the importance of within-species genetic diversity for the success of restoration. We could not find evidence, however, that population recovery benefits from the presence of more diverse AMF communities. Our analysis also showed that the genetic makeup of the host plant structured root-inhabiting AMF communities, suggesting that the plant genetic makeup may be linked to genes that control symbiosis development.
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Affiliation(s)
- Maarten Van Geel
- Plant Conservation and Population Biology, Department of Biology, KU Leuven, Kasteelpark Arenberg 31, 3001, Heverlee, Belgium.
| | - Tsipe Aavik
- Institute of Ecology and Earth Sciences, University of Tartu, 51005, Tartu, Estonia
| | - Tobias Ceulemans
- Plant Conservation and Population Biology, Department of Biology, KU Leuven, Kasteelpark Arenberg 31, 3001, Heverlee, Belgium
| | - Sabrina Träger
- Institute of Ecology and Earth Sciences, University of Tartu, 51005, Tartu, Estonia
- Institute of Biology, Geobotany and Botanical Garden, Martin-Luther-University Halle-Wittenberg, Große Steinstr. 79/80, 06108, Halle (Saale), Germany
| | - Joachim Mergeay
- Research Institute for Nature and Forest, Gaverstraat 4, 9500, Geraardsbergen, Belgium
- Evolution and Biodiversity Conservation, Ecology, KU Leuven, Charles Deberiotstraat 32, Box 2439, 3000, Leuven, Belgium
| | - Gerrit Peeters
- Plant Conservation and Population Biology, Department of Biology, KU Leuven, Kasteelpark Arenberg 31, 3001, Heverlee, Belgium
| | - Kasper van Acker
- Plant Conservation and Population Biology, Department of Biology, KU Leuven, Kasteelpark Arenberg 31, 3001, Heverlee, Belgium
| | - Martin Zobel
- Institute of Ecology and Earth Sciences, University of Tartu, 51005, Tartu, Estonia
| | - Kadri Koorem
- Institute of Ecology and Earth Sciences, University of Tartu, 51005, Tartu, Estonia
| | - Olivier Honnay
- Plant Conservation and Population Biology, Department of Biology, KU Leuven, Kasteelpark Arenberg 31, 3001, Heverlee, Belgium
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15
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Metapopulation management of a critically endangered marsupial in the age of genomics. Glob Ecol Conserv 2021. [DOI: 10.1016/j.gecco.2021.e01869] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022] Open
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16
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Romanelli JP, Silva LGM, Gonçalves MCP, Naves RP, Almeida DRA, Resende AF, Rodrigues RR. Repeatability of the searching process in reviews of restoration outcomes. Restor Ecol 2021. [DOI: 10.1111/rec.13496] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- João Paulo Romanelli
- Laboratory of Ecology and Forest Restoration (LERF), Department of Forest Sciences, “Luiz de Queiroz” College of Agriculture University of São Paulo Avenida Pádua Dias, 11 Piracicaba SP 13418‐900 Brazil
| | - Luiz G. M. Silva
- Department of Civil, Environmental and Geomatic Engineering (D‐BAUG), Stocker Lab Institute for Environmental Engineering (IfU) ETH‐Zurich Zurich 8046 Switzerland
| | - Maria Carolina P. Gonçalves
- Enzyme Technologies Laboratory (LabEnz), Chemical Engineering Department Federal University of São Carlos (UFSCar) São Carlos SP 13565‐905 Brazil
| | - Rafaela P. Naves
- Department of Forest Sciences, “Luiz de Queiroz” College of Agriculture University of São Paulo Avenida Pádua Dias, 11 Piracicaba SP 13418‐900 Brazil
| | - Danilo Roberti Alves Almeida
- Laboratory of Tropical Forestry (LASTROP), Department of Forest Sciences, “Luiz de Queiroz” College of Agriculture University of São Paulo Avenida Pádua Dias, 11 Piracicaba SP 13418‐900 Brazil
| | - Angélica Faria Resende
- Laboratory of Tropical Forestry (LASTROP), Department of Forest Sciences, “Luiz de Queiroz” College of Agriculture University of São Paulo Avenida Pádua Dias, 11 Piracicaba SP 13418‐900 Brazil
| | - Ricardo Ribeiro Rodrigues
- Laboratory of Ecology and Forest Restoration (LERF), Department of Forest Sciences, “Luiz de Queiroz” College of Agriculture University of São Paulo Avenida Pádua Dias, 11 Piracicaba SP 13418‐900 Brazil
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17
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Kaulfuß F, Reisch C. Restoration of species-rich grasslands by transfer of local plant material and its impact on species diversity and genetic variation-Findings of a practical restoration project in southeastern Germany. Ecol Evol 2021; 11:12816-12833. [PMID: 34594541 PMCID: PMC8462159 DOI: 10.1002/ece3.8029] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2020] [Revised: 07/21/2021] [Accepted: 08/02/2021] [Indexed: 11/21/2022] Open
Abstract
Restoration of species-rich grasslands is a key issue of conservation. The transfer of seed-containing local plant material is a proven technique to restore species-rich grassland, since it potentially allows to establish genetically variable and locally adapted populations. In our study, we tested how the transfer of local plant material affected the species diversity and composition of restored grasslands and the genetic variation of the typical grassland plant species Knautia arvensis and Plantago lanceolata. For our study, we selected fifteen study sites in southeastern Germany. We analyzed species diversity and composition and used molecular markers to investigate genetic variation within and among populations of the study species from grasslands that served as source sites for restoration and grasslands, which were restored by transfer of green hay and threshed local plant material. The results revealed no significant differences in species diversity and composition between grasslands at source and restoration sites. Levels of genetic variation within populations of the study species Knautia arvensis and Plantago lanceolata were comparable at source and restoration sites and genetic variation among populations at source and their corresponding restoration sites were only marginal different. Our study suggests that the transfer of local plant material is a restoration approach highly suited to preserve the composition of species-rich grasslands and the natural genetic pattern of typical grassland plant species.
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Affiliation(s)
- Franziska Kaulfuß
- Institute of Plant SciencesUniversity of RegensburgRegensburgGermany
| | - Christoph Reisch
- Institute of Plant SciencesUniversity of RegensburgRegensburgGermany
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18
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Reinula I, Träger S, Hernández‐Agramonte IM, Helm A, Aavik T. Landscape genetic analysis suggests stronger effects of past than current landscape structure on genetic patterns of
Primula veris. DIVERS DISTRIB 2021. [DOI: 10.1111/ddi.13357] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022] Open
Affiliation(s)
- Iris Reinula
- Department of Botany Institute of Ecology and Earth Sciences University of Tartu Tartu Estonia
| | - Sabrina Träger
- Department of Botany Institute of Ecology and Earth Sciences University of Tartu Tartu Estonia
- Institute of Biology/Geobotany and Botanical Garden Martin‐Luther‐University Halle‐Wittenberg Halle (Saale) Germany
| | | | - Aveliina Helm
- Department of Botany Institute of Ecology and Earth Sciences University of Tartu Tartu Estonia
| | - Tsipe Aavik
- Department of Botany Institute of Ecology and Earth Sciences University of Tartu Tartu Estonia
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19
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Mamo LT, Wood G, Wheeler D, Kelaher BP, Coleman MA. Conservation genomics of a critically endangered brown seaweed. JOURNAL OF PHYCOLOGY 2021; 57:1345-1355. [PMID: 33908033 DOI: 10.1111/jpy.13177] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2020] [Revised: 02/27/2021] [Accepted: 04/09/2021] [Indexed: 06/12/2023]
Abstract
Seaweeds provide valuable ecosystem services, but many are undergoing global decline due to climate and anthropogenic stressors. The brown macroalga, Nereia lophocladia (hereafter called Nereia), is among only a handful of seaweeds globally to be listed as critically endangered and is only described from two known locations, but there exists little knowledge about this species. Here, we combine field surveys to verify the distribution of Nereia, with cutting-edge genomics to determine genetic diversity and population structure, and inform ongoing conservation actions. We expand Nereia's known distribution from one to seven locations along a 70-km long coastal stretch in New South Wales but reveal small population sizes at some sites (as few as 8 individuals despite extensive searching). A total of 1,261 genome-wide SNPs were retained from 70 individuals after filtering, and 304 outlier loci under putative selection were detected by one of three methods. Populations showed low genetic diversity (mean expected heterozygosity HE = 0.055 ± 0.014) and high levels of inbreeding within populations (mean FIS = 0.721 ± 0.085), along with high genetic differentiation among sites (mean FST = 0.276), which may increase susceptibility to future environmental change and decrease the species' ability to recover after loss. Given these findings, we recommend the consideration of both in situ and ex situ conservation measures for Nereia, as well as further research into the species' ecology and biology. Nereia remains of conservation concern and its listing as critically endangered is justified until further investigation elucidates the full distribution and adaptive capacity of the species.
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Affiliation(s)
- Lea T Mamo
- National Marine Science Centre, Southern Cross University, Coffs Harbour, New South Wales, 2450, Australia
| | - Georgina Wood
- School of Life and Environmental Sciences, Coastal and Marine Ecosystems, University of Sydney, Sydney, New South Wales, 2006, Australia
| | - David Wheeler
- NSW Department of Primary Industries, Orange, New South Wales, 2800, Australia
| | - Brendan P Kelaher
- National Marine Science Centre, Southern Cross University, Coffs Harbour, New South Wales, 2450, Australia
| | - Melinda A Coleman
- National Marine Science Centre, Southern Cross University, Coffs Harbour, New South Wales, 2450, Australia
- Department of Primary Industries, NSW Fisheries, Coffs Harbour, New South Wales, 2450, Australia
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20
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Rodríguez-Peña RA, León RCD, Manzueta-Acevedo K, Fernández-Canela J, Bastardo RH. Genetic Diversity and Reproductive Biology of Two Species of Vaccinium (Ericaceae) in the Dominican Republic. CARIBB J SCI 2021. [DOI: 10.18475/cjos.v51i1.a15] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Rosa A. Rodríguez-Peña
- Department of Evolution, Ecology and Organismal Biology, The Ohio State University, Columbus, Ohio, U.S.A
| | - Rosanna Carreras-De León
- Instituto Tecnológico de Santo Domingo, Área de Ciencias Básicas y Ambientales, Departamento de Biología, Santo Domingo, Dominican Republic
| | | | | | - Ruth H. Bastardo
- Instituto de Investigaciones Botánicas y Zoológicas, Universidad Autónoma de Santo Domingo, Santo Domingo, Dominican Republic
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21
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Fu Q, Deng J, Chen M, Zhong Y, Lu GH, Wang YQ. Population genetic structure and connectivity of a riparian selfing herb Caulokaempferia coenobialis at a fine-scale geographic level in subtropical monsoon forest. BMC PLANT BIOLOGY 2021; 21:329. [PMID: 34238223 PMCID: PMC8265151 DOI: 10.1186/s12870-021-03101-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/27/2021] [Accepted: 06/16/2021] [Indexed: 06/13/2023]
Abstract
BACKGROUND Rivers and streams facilitate movement of individuals and their genes across the landscape and are generally recognized as dispersal corridors for riparian plants. Nevertheless, some authors have reported directly contrasting results, which may be attributed to a complex mixture of factors, such as the mating system and dispersal mechanisms of propagules (seed and pollen), that make it difficult to predict the genetic diversity and population structure of riparian species. Here, we investigated a riparian self-fertilizing herb Caulokaempferia coenobialis, which does not use anemochory or zoochory for seed dispersal; such studies could contribute to an improved understanding of the effect of rivers or streams on population genetic diversity and structure in riparian plants. Using polymorphic ISSR and cpDNA loci, we studied the effect at a microgeographic scale of different stream systems (a linear stream, a dendritic stream, and complex transverse hydrological system) in subtropical monsoon forest on the genetic structure and connectivity of C. coenobialis populations across Dinghu Mountain (DH) and Nankun Mountain (NK). RESULTS The results indicate that the most recent haplotypes (DH: H7, H8; NK: h6, h7, h11, h12) are not shared among local populations of C. coenobialis within each stream system. Furthermore, downstream local populations do not accumulate genetic diversity, whether in the linear streamside local populations across DH (H: 0.091 vs 0.136) or the dendritic streamside local populations across NK (H: 0.079 vs 0.112, 0.110). Our results show that the connectivity of local C. coenobialis populations across DH and NK can be attributed to historical gene flows, resulting in a lack of spatial genetic structure, despite self-fertilization. Selfing C. coenobialis can maintain high genetic diversity (H = 0.251; I = 0.382) through genetic differentiation (GST = 0.5915; FST = 0.663), which is intensified by local adaptation and neutral mutation and/or genetic drift in local populations at a microgeographic scale. CONCLUSION We suggest that streams are not acting as corridors for dispersal of C. coenobialis, and conservation strategies for maintaining genetic diversity of selfing species should be focused on the protection of all habitat types, especially isolated fragments in ecosystem processes.
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Affiliation(s)
- Qiong Fu
- Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, China
| | - Jie Deng
- Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, China
| | - Min Chen
- Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, China
| | - Yan Zhong
- Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, China
| | - Guo-Hui Lu
- Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, China
| | - Ying-Qiang Wang
- Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, China.
- Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, School of Life Sciences, South China Normal University, Guangzhou, China.
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22
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Huang R, Wang Y, Li K, Wang YQ. Genetic variation and population structure of clonal Zingiber zerumbet at a fine geographic scale: a comparison with two closely related selfing and outcrossing Zingiber species. BMC Ecol Evol 2021; 21:116. [PMID: 34107885 PMCID: PMC8191059 DOI: 10.1186/s12862-021-01853-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2021] [Accepted: 05/27/2021] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND There has always been controversy over whether clonal plants have lower genetic diversity than plants that reproduce sexually. These conflicts could be attributed to the fact that few studies have taken into account the mating system of sexually reproducing plants and their phylogenetic distance. Moreover, most clonal plants in these previous studies regularly produce sexual progeny. Here, we describe a study examining the levels of genetic diversity and differentiation within and between local populations of fully clonal Zingiber zerumbet at a microgeographical scale and compare the results with data for the closely related selfing Z. corallinum and outcrossing Z. nudicarpum. Such studies could disentangle the phylogenetic and sexually reproducing effect on genetic variation of clonal plants, and thus contribute to an improved understanding in the clonally reproducing effects on genetic diversity and population structure. RESULTS The results revealed that the level of local population genetic diversity of clonal Z. zerumbet was comparable to that of outcrossing Z. nudicarpum and significantly higher than that of selfing Z. corallinum. However, the level of microgeographic genetic diversity of clonal Z. zerumbet is comparable to that of selfing Z. corallinum and even slightly higher than that of outcrossing Z. nudicarpum. The genetic differentiation among local populations of clonal Z. zerumbet was significantly lower than that of selfing Z. corallinum, but higher than that of outcrossing Z. nudicarpum. A stronger spatial genetic structure appeared within local populations of Z. zerumbet compared with selfing Z. corallinum and outcrossing Z. nudicarpum. CONCLUSIONS Our study shows that fully clonal plants are able not only to maintain a high level of within-population genetic diversity like outcrossing plants, but can also maintain a high level of microgeographic genetic diversity like selfing plant species, probably due to the accumulation of somatic mutations and absence of a capacity for sexual reproduction. We suggest that conservation strategies for the genetic diversity of clonal and selfing plant species should be focused on the protection of all habitat types, especially fragments within ecosystems, while maintenance of large populations is a key to enhance the genetic diversity of outcrossing species.
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Affiliation(s)
- Rong Huang
- Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, School of Life Sciences, South China Normal University, Guangzhou, 510631, China
| | - Yu Wang
- Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, School of Life Sciences, South China Normal University, Guangzhou, 510631, China
| | - Kuan Li
- Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, School of Life Sciences, South China Normal University, Guangzhou, 510631, China
| | - Ying-Qiang Wang
- Guangzhou Key Laboratory of Subtropical Biodiversity and Biomonitoring, School of Life Sciences, South China Normal University, Guangzhou, 510631, China. .,Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, 510631, China.
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23
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Thomson AI, Archer FI, Coleman MA, Gajardo G, Goodall‐Copestake WP, Hoban S, Laikre L, Miller AD, O’Brien D, Pérez‐Espona S, Segelbacher G, Serrão EA, Sjøtun K, Stanley MS. Charting a course for genetic diversity in the UN Decade of Ocean Science. Evol Appl 2021; 14:1497-1518. [PMID: 34178100 PMCID: PMC8210796 DOI: 10.1111/eva.13224] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2020] [Revised: 03/04/2021] [Accepted: 03/04/2021] [Indexed: 02/06/2023] Open
Abstract
The health of the world's oceans is intrinsically linked to the biodiversity of the ecosystems they sustain. The importance of protecting and maintaining ocean biodiversity has been affirmed through the setting of the UN Sustainable Development Goal 14 to conserve and sustainably use the ocean for society's continuing needs. The decade beginning 2021-2030 has additionally been declared as the UN Decade of Ocean Science for Sustainable Development. This program aims to maximize the benefits of ocean science to the management, conservation, and sustainable development of the marine environment by facilitating communication and cooperation at the science-policy interface. A central principle of the program is the conservation of species and ecosystem components of biodiversity. However, a significant omission from the draft version of the Decade of Ocean Science Implementation Plan is the acknowledgment of the importance of monitoring and maintaining genetic biodiversity within species. In this paper, we emphasize the importance of genetic diversity to adaptive capacity, evolutionary potential, community function, and resilience within populations, as well as highlighting some of the major threats to genetic diversity in the marine environment from direct human impacts and the effects of global climate change. We then highlight the significance of ocean genetic diversity to a diverse range of socioeconomic factors in the marine environment, including marine industries, welfare and leisure pursuits, coastal communities, and wider society. Genetic biodiversity in the ocean, and its monitoring and maintenance, is then discussed with respect to its integral role in the successful realization of the 2030 vision for the Decade of Ocean Science. Finally, we suggest how ocean genetic diversity might be better integrated into biodiversity management practices through the continued interaction between environmental managers and scientists, as well as through key leverage points in industry requirements for Blue Capital financing and social responsibility.
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Affiliation(s)
| | | | - Melinda A. Coleman
- New South Wales FisheriesNational Marine Science CentreCoffs HarbourNSWAustralia
- National Marine Science CentreSouthern Cross UniversityCoffs HarbourNSWAustralia
- Oceans Institute and School of Biological SciencesUniversity of Western AustraliaCrawleyWAAustralia
| | - Gonzalo Gajardo
- Laboratory of Genetics, Aquaculture & BiodiversityUniversidad de Los LagosOsornoChile
| | | | - Sean Hoban
- Centre for Tree ScienceThe Morton ArboretumLisleILUSA
| | - Linda Laikre
- Centre for Tree ScienceThe Morton ArboretumLisleILUSA
- The Wildlife Analysis UnitThe Swedish Environmental Protection AgencyStockholmSweden
| | - Adam D. Miller
- School of Life and Environmental SciencesCentre for Integrative EcologyDeakin UniversityGeelongVicAustralia
- Deakin Genomics CentreDeakin UniversityGeelongVic.Australia
| | | | - Sílvia Pérez‐Espona
- The Royal (Dick) School of Veterinary Studies and The Roslin InstituteMidlothianUK
| | - Gernot Segelbacher
- Chair of Wildlife Ecology and ManagementUniversity FreiburgFreiburgGermany
| | - Ester A. Serrão
- CCMARCentre of Marine SciencesFaculty of Sciences and TechnologyUniversity of AlgarveFaroPortugal
| | - Kjersti Sjøtun
- Department of Biological SciencesUniversity of BergenBergenNorway
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Nolan M, Dewees S, Ma Lucero S. Identifying effective restoration approaches to maximize plant establishment in California grasslands through a
meta‐analysis. Restor Ecol 2021. [DOI: 10.1111/rec.13370] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Madeline Nolan
- Department of Ecology, Evolution, and Marine Biology University of California Santa Barbara Santa Barbara CA 93106 U.S.A
| | - Shane Dewees
- Department of Ecology, Evolution, and Marine Biology University of California Santa Barbara Santa Barbara CA 93106 U.S.A
| | - Stephanie Ma Lucero
- Department of Ecology, Evolution, and Marine Biology University of California Santa Barbara Santa Barbara CA 93106 U.S.A
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Evolutionary history and genetic connectivity across highly fragmented populations of an endangered daisy. Heredity (Edinb) 2021; 126:846-858. [PMID: 33608651 PMCID: PMC8102499 DOI: 10.1038/s41437-021-00413-0] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2020] [Revised: 01/24/2021] [Accepted: 01/25/2021] [Indexed: 01/31/2023] Open
Abstract
Conservation management can be aided by knowledge of genetic diversity and evolutionary history, so that ecological and evolutionary processes can be preserved. The Button Wrinklewort daisy (Rutidosis leptorrhynchoides) was a common component of grassy ecosystems in south-eastern Australia. It is now endangered due to extensive habitat loss and the impacts of livestock grazing, and is currently restricted to a few small populations in two regions >500 km apart, one in Victoria, the other in the Australian Capital Territory and nearby New South Wales (ACT/NSW). Using a genome-wide SNP dataset, we assessed patterns of genetic structure and genetic differentiation of 12 natural diploid populations. We estimated intrapopulation genetic diversity to scope sources for genetic management. Bayesian clustering and principal coordinate analyses showed strong population genetic differentiation between the two regions, and substantial substructure within ACT/NSW. A coalescent tree-building approach implemented in SNAPP indicated evolutionary divergence between the two distant regions. Among the populations screened, the last two known remaining Victorian populations had the highest genetic diversity, despite having among the lowest recent census sizes. A maximum likelihood population tree method implemented in TreeMix suggested little or no recent gene flow except potentially between very close neighbours. Populations that were more genetically distinctive had lower genetic diversity, suggesting that drift in isolation is likely driving population differentiation though loss of diversity, hence re-establishing gene flow among them is desirable. These results provide background knowledge for evidence-based conservation and support genetic rescue within and between regions to elevate genetic diversity and alleviate inbreeding.
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Isolation and characterization of microsatellites for the endangered endemic tree Nothofagus alessandrii (Nothofagaceae). Mol Biol Rep 2021; 48:3877-3883. [PMID: 33893926 DOI: 10.1007/s11033-021-06291-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2021] [Accepted: 03/13/2021] [Indexed: 10/21/2022]
Abstract
Nothofagus alessandrii (Nothofagaceae) is one of the most endangered trees from Chile due to high rates of habitat disturbance caused by human activities. Despite its conservation status, few molecular markers are available to study its population genetic, connectivity and to assist reproduction programs. Thus, the species needs urgent actions to restore its original distribution. Novel polymorphic microsatellites from the genome of N. alessandrii were isolated and characterized using high-through sequencing. A total of 30 primer pairs were synthesized and 18 microsatellites were amplified correctly. Polymorphism and genetic diversity was evaluated in 58 individuals from three populations of N. alessandrii. Sixteen of them were polymorphic and the number of alleles in the pooled sample ranged from 2 to 14, the mean number of alleles was 4.81. The mean values of observed heterozigosity (HO) and excepted heterozygosity (HE) are similar in all studied populations. Linkage disequilibrium was found between a few pairs of loci (five out of 263 tests) suggesting that most of the markers can be considered as independent. Significant deviations from Hardy-Weinberg equilibrium (P < 0.05) were found in four loci probably due to low sampling size. Transferability to the congeneric N. pumilio was successful in only four out of the sixteen polymorphic markers. The microsatellite markers developed in this study will be useful to study the genetic diversity and structure and to develop integrated management plans for the conservation of this endangered species.
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Challenges during the execution, results, and monitoring phases of ecological restoration: Learning from a country-wide assessment. PLoS One 2021; 16:e0249573. [PMID: 33822816 PMCID: PMC8023452 DOI: 10.1371/journal.pone.0249573] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2020] [Accepted: 03/21/2021] [Indexed: 11/19/2022] Open
Abstract
Outcomes from restoration projects are often difficult for policymakers and stakeholders to assess, but this information is fundamental for scaling up ecological restoration actions. We evaluated technical aspects of the interventions, results (ecological and socio-economic) and monitoring practices in 75 restoration projects in Mexico using a digital survey composed of 137 questions. We found that restoration projects in terrestrial ecosystems generally relied on actions included in minimal (97%) and maximal (86%) intervention, while in wetlands, the preferred restoration strategies were intermediate (75%) and minimal intervention (63%). Only a third of the projects (38%) relied on collective learning as a source of knowledge to generate techniques (traditional management). In most of the projects (73%), multiple criteria (>2) were considered when selecting plant species for plantings; the most frequently used criterion was that plant species were found within the restoration area, native or naturalized (i.e., a circa situm criterion; 88%). In 48% of the projects, the biological material required for restoration (e.g., seeds and seedlings) were gathered or propagated by project implementers rather than purchased commercially. Only a few projects (between 33 and 34%) reached a high level of biodiversity recovery (>75%). Most of the projects (between 69 to71%) recovered less than 50% of the ecological services. Most of the projects (82%) led to improved individual relationships. The analysis revealed a need to implement strategies that are cost-effective, the application of traditional ecological knowledge and the inclusion of indigenous people and local communities in restoration programs at all stages—from planning to implementation, through monitoring. We also identified the need to expand research to develop effective tools to assess ecosystems’ regeneration potential and develop theoretical frameworks to move beyond short-term markers to set and achieve medium- and long-term goals. Cautious and comprehensive planning of national strategies must consider the abovementioned identified gaps.
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28
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The Genetic Component of Seagrass Restoration: What We Know and the Way Forwards. WATER 2021. [DOI: 10.3390/w13060829] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Seagrasses are marine flowering plants providing key ecological services and functions in coasts and estuaries across the globe. Increased environmental changes fueled by human activities are affecting their existence, compromising natural habitats and ecosystems’ biodiversity and functioning. In this context, restoration of disturbed seagrass environments has become a worldwide priority to reverse ecosystem degradation and to recover ecosystem functionality and associated services. Despite the proven importance of genetic research to perform successful restoration projects, this aspect has often been overlooked in seagrass restoration. Here, we aimed to provide a comprehensive perspective of genetic aspects related to seagrass restoration. To this end, we first reviewed the importance of studying the genetic diversity and population structure of target seagrass populations; then, we discussed the pros and cons of different approaches used to restore and/or reinforce degraded populations. In general, the collection of genetic information and the development of connectivity maps are critical steps for any seagrass restoration activity. Traditionally, the selection of donor population preferred the use of local gene pools, thought to be the best adapted to current conditions. However, in the face of rapid ocean changes, alternative approaches such as the use of climate-adjusted or admixture genotypes might provide more sustainable options to secure the survival of restored meadows. Also, we discussed different transplantation strategies applied in seagrasses and emphasized the importance of long-term seagrass monitoring in restoration. The newly developed information on epigenetics as well as the application of assisted evolution strategies were also explored. Finally, a view of legal and ethical issues related to national and international restoration management is included, highlighting improvements and potential new directions to integrate with the genetic assessment. We concluded that a good restoration effort should incorporate: (1) a good understanding of the genetic structure of both donors and populations being restored; (2) the analysis of local environmental conditions and disturbances that affect the site to be restored; (3) the analysis of local adaptation constraints influencing the performances of donor populations and native plants; (4) the integration of distribution/connectivity maps with genetic information and environmental factors relative to the target seagrass populations; (5) the planning of long-term monitoring programs to assess the performance of the restored populations. The inclusion of epigenetic knowledge and the development of assisted evolution programs are strongly hoped for the future.
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High gene flow through pollen partially compensates spatial limited gene flow by seeds for a Neotropical tree in forest conservation and restoration areas. CONSERV GENET 2021. [DOI: 10.1007/s10592-021-01344-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Canty SWJ, Fox G, Rowntree JK, Preziosi RF. Genetic structure of a remnant Acropora cervicornis population. Sci Rep 2021; 11:3523. [PMID: 33568733 PMCID: PMC7876111 DOI: 10.1038/s41598-021-83112-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2020] [Accepted: 01/13/2021] [Indexed: 01/30/2023] Open
Abstract
Amongst the global decline of coral reefs, hope spots such as Cordelia Bank in Honduras, have been identified. This site contains dense, remnant thickets of the endangered species Acropora cervicornis, which local managers and conservation organizations view as a potential source population for coral restoration projects. The aim of this study was to determine the genetic diversity of colonies across three banks within the protected area. We identified low genetic diversity (FST = 0.02) across the three banks, and genetic similarity of colonies ranged from 91.3 to 95.8% between the banks. Clonality rates were approximately 30% across the three banks, however, each genotype identified was unique to each bank. Despite the low genetic diversity, subtle genetic differences within and among banks were demonstrated, and these dense thickets were shown not to be comprised of a single or a few genotypes. The presence of multiple genotypes suggests A. cervicornis colonies from these banks could be used to maintain and enhance genetic diversity in restoration projects. Management of hope spots, such as Cordelia Bank, and the incorporation of genetic information into restoration projects to ensure genetic diversity within out-planted populations, will be critical in the ongoing challenge of conserving and preserving coral reefs.
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Affiliation(s)
- Steven W. J. Canty
- grid.1214.60000 0000 8716 3312Working Land and Seascapes, Conservation Commons, Smithsonian Institution, Washington, DC 20013 USA ,grid.452909.30000 0001 0479 0204Smithsonian Marine Station, 701 Seaway Drive, Fort Pierce, FL 34949 USA ,grid.25627.340000 0001 0790 5329Department of Natural Sciences, Ecology and Environment Research Centre, Manchester Metropolitan University, Manchester, M1 5GD UK ,Centro de Estudios Marinos, Tegucigalpa, Honduras
| | - Graeme Fox
- grid.25627.340000 0001 0790 5329Department of Natural Sciences, Ecology and Environment Research Centre, Manchester Metropolitan University, Manchester, M1 5GD UK
| | - Jennifer K. Rowntree
- grid.25627.340000 0001 0790 5329Department of Natural Sciences, Ecology and Environment Research Centre, Manchester Metropolitan University, Manchester, M1 5GD UK
| | - Richard F. Preziosi
- grid.25627.340000 0001 0790 5329Department of Natural Sciences, Ecology and Environment Research Centre, Manchester Metropolitan University, Manchester, M1 5GD UK
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31
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Fišer Ž, Aronne G, Aavik T, Akin M, Alizoti P, Aravanopoulos F, Bacchetta G, Balant M, Ballian D, Barazani O, Bellia AF, Bernhardt N, Bou Dagher Kharrat M, Bugeja Douglas A, Burkart M, Ćalić D, Carapeto A, Carlsen T, Castro S, Colling G, Cursach J, Cvetanoska S, Cvetkoska C, Ćušterevska R, Daco L, Danova K, Dervishi A, Djukanović G, Dragićević S, Ensslin A, Evju M, Fenu G, Francisco A, Gallego PP, Galloni M, Ganea A, Gemeinholzer B, Glasnović P, Godefroid S, Goul Thomsen M, Halassy M, Helm A, Hyvärinen M, Joshi J, Kazić A, Kiehn M, Klisz M, Kool A, Koprowski M, Kövendi-Jakó A, Kříž K, Kropf M, Kull T, Lanfranco S, Lazarević P, Lazarević M, Lebel Vine M, Liepina L, Loureiro J, Lukminė D, Machon N, Meade C, Metzing D, Milanović Đ, Navarro L, Orlović S, Panis B, Pankova H, Parpan T, Pašek O, Peci D, Petanidou T, Plenk K, Puchałka R, Radosavljević I, Rankou H, Rašomavičius V, Romanciuc G, Ruotsalainen A, Šajna N, Salaj T, Sánchez-Romero C, Sarginci M, Schäfer D, Seberg O, Sharrock S, Šibík J, Šibíková M, Skarpaas O, Stanković Neđić M, Stojnic S, Surina B, Szitár K, Teofilovski A, Thoroddsen R, Tsvetkov I, Uogintas D, Van Meerbeek K, van Rooijen N, Vassiliou L, Verbylaitė R, Vergeer P, Vít P, Walczak M, Widmer A, Wiland-Szymańska J, Zdunić G, Zippel E. ConservePlants: An integrated approach to conservation of threatened plants for the 21st Century. RESEARCH IDEAS AND OUTCOMES 2021. [DOI: 10.3897/rio.7.e62810] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Even though plants represent an essential part of our lives offering exploitational, supporting and cultural services, we know very little about the biology of the rarest and most threatened plant species, and even less about their conservation status. Rapid changes in the environment and climate, today more pronounced than ever, affect their fitness and distribution causing rapid species declines, sometimes even before they had been discovered. Despite the high goals set by conservationists to protect native plants from further degradation and extinction, the initiatives for the conservation of threatened species in Europe are scattered and have not yielded the desired results. The main aim of this Action is to improve plant conservation in Europe through the establishment of a network of scientists and other stakeholders who deal with different aspects of plant conservation, from plant taxonomy, ecology, conservation genetics, conservation physiology and reproductive biology to protected area's managers, not forgetting social scientists, who are crucial when dealing with the general public.
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32
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Airoldi L, Beck MW, Firth LB, Bugnot AB, Steinberg PD, Dafforn KA. Emerging Solutions to Return Nature to the Urban Ocean. ANNUAL REVIEW OF MARINE SCIENCE 2021; 13:445-477. [PMID: 32867567 DOI: 10.1146/annurev-marine-032020-020015] [Citation(s) in RCA: 32] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Urban and periurban ocean developments impact 1.5% of the global exclusive economic zones, and the demand for ocean space and resources is increasing. As we strive for a more sustainable future, it is imperative that we better design, manage, and conserve urban ocean spaces for both humans and nature. We identify three key objectives for more sustainable urban oceans: reduction of urban pressures, protection and restoration of ocean ecosystems, and support of critical ecosystem services. We describe an array of emerging evidence-based approaches, including greening grayinfrastructure, restoring habitats, and developing biotechnologies. We then explore new economic instruments and incentives for supporting these new approaches and evaluate their feasibility in delivering these objectives. Several of these tools have the potential to help bring nature back to the urban ocean while also addressing some of the critical needs of urban societies, such as climate adaptation, seafood production, clean water, and recreation, providing both human and environmental benefits in some of our most impacted ocean spaces.
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Affiliation(s)
- Laura Airoldi
- Department of Biology, Chioggia Hydrobiological Station Umberto D'Ancona, University of Padova, 30015 Chioggia, Italy;
- Department of Biological, Geological, and Environmental Sciences and Interdepartmental Research Center for Environmental Sciences, University of Bologna, UO CoNISMa, 48123 Ravenna, Italy
| | - Michael W Beck
- Institute of Marine Sciences, University of California, Santa Cruz, California 95060, USA;
| | - Louise B Firth
- School of Biological and Marine Sciences, University of Plymouth, Plymouth PL4 8AA, United Kingdom;
| | - Ana B Bugnot
- School of Life and Environmental Sciences, University of Sydney, Sydney, New South Wales 2006, Australia;
- Sydney Institute of Marine Science, Mosman, New South Wales 2088, Australia
| | - Peter D Steinberg
- Sydney Institute of Marine Science, Mosman, New South Wales 2088, Australia
- Centre for Marine Science and Innovation and School of Biological, Earth, and Environmental Science, University of New South Wales, Sydney, New South Wales 2052, Australia;
- Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore 637551
| | - Katherine A Dafforn
- Department of Earth and Environmental Sciences, Macquarie University, North Ryde, New South Wales 2109, Australia;
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33
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Van Rossum F, Destombes A, Raspé O. Are large census‐sized populations always the best sources for plant translocations? Restor Ecol 2020. [DOI: 10.1111/rec.13316] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Fabienne Van Rossum
- Meise Botanic Garden Nieuwelaan 38, 1860 Meise Belgium
- Service Général de l'Enseignement supérieur et de la Recherche scientifique Fédération Wallonie‐Bruxelles rue A. Lavallée 1, 1080 Brussels Belgium
| | | | - Olivier Raspé
- Meise Botanic Garden Nieuwelaan 38, 1860 Meise Belgium
- Service Général de l'Enseignement supérieur et de la Recherche scientifique Fédération Wallonie‐Bruxelles rue A. Lavallée 1, 1080 Brussels Belgium
- Present address: Center of Excellence in Fungal Research and School of Science Mae Fah Luang University Chiang Rai 57100 Thailand
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34
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Burge D. Conservation genomics and pollination biology of an endangered, edaphic-endemic, octoploid herb: El Dorado bedstraw ( Galium californicum subsp. sierrae; Rubiaceae). PeerJ 2020; 8:e10042. [PMID: 33173616 PMCID: PMC7594638 DOI: 10.7717/peerj.10042] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2020] [Accepted: 09/04/2020] [Indexed: 01/25/2023] Open
Abstract
El Dorado bedstraw (Galium californicum subsp. sierrae) is a federally endangered dioecious, octoploid, perennial herb found only in the Pine Hill region of El Dorado County, CA, USA. Like many species of Galium, El Dorado bedstraw is capable of both sexual and asexual reproduction, spreading via stem-layering as well as seeds. El Dorado bedstraw is also dioecious, and thus dependent on pollinators to transfer pollen from male to female stems. The capacity for asexual reproduction has conservation implications for this plant, due to the potential for populations to become dominated by a small number of clones in the absence of recruitment from seeds. No previous work has examined either the population genetics or pollination biology of this plant. Here, double-digest restriction site-associated DNA sequencing was used to develop a genetic dataset for a sample of El Dorado bedstraw (12 individuals from each of seven locations). Genomic data was used to calculate population genetic statistics and quantify the degree to which clonality affects the sampled populations. Visual observation of insect visitors at every sampling location was used to assess the potential for pollen transfer within and among locations. A total of 23 clonal colonies were detected across 82 successfully sequenced stems, consisting of an average of 2.4 individuals (range: 2–6). Significant isolation by distance among locations was detected using a Mantel test. Insect pollinators were from eleven families, consisting mainly of small species with weak flight. It is recommended that clonality and small-scale population differentiation be taken into account in conservation measures.
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Affiliation(s)
- Dylan Burge
- Department of Ecology and Evolutionary Biology, University of California, Los Angeles, Los Angeles, CA, USA
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35
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Rico Y. A comprehensive landscape genomics approach for seed sourcing strategies in landscapes under varying degrees of habitat disturbance. Mol Ecol Resour 2020; 21:14-17. [PMID: 32748518 DOI: 10.1111/1755-0998.13237] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2020] [Accepted: 07/28/2020] [Indexed: 11/29/2022]
Abstract
As most ecosystems around the world are threatened by anthropogenic degradation and climate change, there is an increasing urgency to implement restoration strategies aiming at ensuring ecosystem self-sustainability and resilience. An initial step towards that goal relies on selecting the most suitable seed sources for a successful revegetation, which can be extremely challenging in highly degraded landscapes. The most common seed sourcing strategy is to select local seeds because it is assumed that plants experience strong adaptations to their natal sites. An alternative strategy is the selection of climate-adapted genotypes to future conditions. While considering future climatic projections is important to account for spatial shifts in climate to inform assisted gene flow and translocations, to restore highly degraded landscapes we need a comprehensive approach that first accounts for species adaptations to current at-site environmental conditions. In this issue of Molecular Ecology Resources, Carvalho et al. present a novel landscape genomics framework to identify the most appropriate seed sourcing strategy for moderately and highly degraded sites by integrating genotype, phenotype and environmental data in a spatially explicit context for two native plant species with potential to help restore iron-rich Amazonian savannas. This framework is amenable to be applicable and adapted to a broad range of restoration initiatives, as the dichotomy between focusing on the current or future climatic conditions should depend on the goals and environmental circumstances of each restoration site.
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Affiliation(s)
- Yessica Rico
- Red de Diversidad Biológica del Occidente Mexicano, Instituto de Ecología A.C., Michoacán, Mexico.,CONACyT, Ciudad de México, México
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36
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Wood G, Marzinelli EM, Vergés A, Campbell AH, Steinberg PD, Coleman MA. Using genomics to design and evaluate the performance of underwater forest restoration. J Appl Ecol 2020. [DOI: 10.1111/1365-2664.13707] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Georgina Wood
- Centre for Marine Science and InnovationSchool of Biological, Earth and Environmental Sciences Sydney NSW Australia
| | - Ezequiel M. Marzinelli
- School of Life and Environmental Sciences The University of Sydney Sydney NSW Australia
- Singapore Centre for Environmental Life Sciences EngineeringNanyang Technological University Singapore Singapore
- Sydney Institute of Marine Science Sydney NSW Australia
| | - Adriana Vergés
- Centre for Marine Science and InnovationSchool of Biological, Earth and Environmental Sciences Sydney NSW Australia
- Sydney Institute of Marine Science Sydney NSW Australia
| | - Alexandra H. Campbell
- USC Seaweed Research Group University of the Sunshine Coast Sunshine Coast QLD Australia
| | - Peter D. Steinberg
- Centre for Marine Science and InnovationSchool of Biological, Earth and Environmental Sciences Sydney NSW Australia
- Singapore Centre for Environmental Life Sciences EngineeringNanyang Technological University Singapore Singapore
- Sydney Institute of Marine Science Sydney NSW Australia
| | - Melinda A. Coleman
- Department of Primary Industries National Marine Science Centre Coffs Harbour NSW Australia
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37
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Carvalho CS, Forester BR, Mitre SK, Alves R, Imperatriz-Fonseca VL, Ramos SJ, Resende-Moreira LC, Siqueira JO, Trevelin LC, Caldeira CF, Gastauer M, Jaffé R. Combining genotype, phenotype, and environmental data to delineate site-adjusted provenance strategies for ecological restoration. Mol Ecol Resour 2020; 21:44-58. [PMID: 32419278 DOI: 10.1111/1755-0998.13191] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2020] [Revised: 04/23/2020] [Accepted: 05/11/2020] [Indexed: 12/29/2022]
Abstract
Despite the importance of climate-adjusted provenancing to mitigate the effects of environmental change, climatic considerations alone are insufficient when restoring highly degraded sites. Here we propose a comprehensive landscape genomic approach to assist the restoration of moderately disturbed and highly degraded sites. To illustrate it we employ genomic data sets comprising thousands of single nucleotide polymorphisms from two plant species suitable for the restoration of iron-rich Amazonian Savannas. We first use a subset of neutral loci to assess genetic structure and determine the genetic neighbourhood size. We then identify genotype-phenotype-environment associations, map adaptive genetic variation, and predict adaptive genotypes for restoration sites. Whereas local provenances were found optimal to restore a moderately disturbed site, a mixture of genotypes seemed the most promising strategy to recover a highly degraded mining site. We discuss how our results can help define site-adjusted provenancing strategies, and argue that our methods can be more broadly applied to assist other restoration initiatives.
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Affiliation(s)
- Carolina S Carvalho
- Instituto Tecnológico Vale, Belém, Pará, Brazil.,Departamento de Genética e Evolução, Universidade Federal de São Carlos, São Paulo, São Paulo, Brazil
| | | | | | | | | | | | | | - José O Siqueira
- Instituto Tecnológico Vale, Belém, Pará, Brazil.,Departamento de Ciência do Solo, Universidade Federal de Lavras, Lavras, Minas Gerais, Brazil
| | | | | | | | - Rodolfo Jaffé
- Instituto Tecnológico Vale, Belém, Pará, Brazil.,Departamento de Ecologia, Universidade de São Paulo, São Paulo, São Paulo, Brazil
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38
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Pacioni C, Atkinson A, Wayne AF, Maxwell MA, Ward CG, Spencer PBS. Spatially sensitive harvest design can minimize genetic relatedness and enhance genetic outcomes in translocation programmes. J Zool (1987) 2020. [DOI: 10.1111/jzo.12791] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- C. Pacioni
- Environmental and Conservation Sciences Murdoch University Murdoch WA Australia
- Department of Environment, Land, Water and Planning Arthur Rylah Institute Heidelberg Vic Australia
| | - A. Atkinson
- Environmental and Conservation Sciences Murdoch University Murdoch WA Australia
| | - A. F. Wayne
- Department of Biodiversity, Conservation and Attractions Biodiveristy and Conservation Science Manjimup WA Australia
| | - M. A. Maxwell
- Department of Biodiversity, Conservation and Attractions Biodiveristy and Conservation Science Manjimup WA Australia
| | - C. G. Ward
- Department of Biodiversity, Conservation and Attractions Biodiveristy and Conservation Science Manjimup WA Australia
| | - P. B. S. Spencer
- Environmental and Conservation Sciences Murdoch University Murdoch WA Australia
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39
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Duncan SI, Robertson EP, Fletcher RJ, Austin JD. Urbanization and Population Genetic Structure of the Panama City crayfish (Procambarus econfinae). J Hered 2020; 111:204-215. [PMID: 31746328 DOI: 10.1093/jhered/esz072] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2019] [Accepted: 11/18/2019] [Indexed: 11/13/2022] Open
Abstract
For species with geographically restricted distributions, the impacts of habitat loss and fragmentation on long-term persistence may be particularly pronounced. We examined the genetic structure of Panama City crayfish (PCC), Procambarus econfinae, whose historical distribution is limited to an area approximately 145 km2, largely within the limits of Panama City and eastern Bay County, FL. Currently, PCC occupy approximately 28% of its historical range, with suitable habitat composed of fragmented patches in the highly urbanized western portion of the range and managed plantations in the more contiguous eastern portion of the range. We used 1640 anonymous single-nucleotide polymorphisms to evaluate the effects of anthropogenic habitat modification on the genetic diversity and population structure of 161 PCC sampled from across its known distribution. First, we examined urban habitat patches in the west compared with less-developed habitat patches in the east. Second, we used approximate Bayesian computation to model inferences on the demographic history of eastern and western populations. We found anthropogenic habitat modifications explain the genetic structure of PCC range-wide. Clustering analyses revealed significant genetic structure between and within eastern and western regions. Estimates of divergence between east and west were consistent with urban growth in the mid-20th century. PCC have low genetic diversity and high levels of inbreeding and relatedness, indicating populations are small and isolated. Our results suggest that PCC have been strongly affected by habitat loss and fragmentation and management strategies, including legal protection, translocations, or reintroductions, may be necessary to ensure long-term persistence.
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Affiliation(s)
| | - Ellen P Robertson
- Department of Wildlife Ecology and Conservation, University of Florida, Gainesville, FL
| | - Robert J Fletcher
- Department of Wildlife Ecology and Conservation, University of Florida, Gainesville, FL
| | - James D Austin
- Department of Wildlife Ecology and Conservation, University of Florida, Gainesville, FL
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40
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Oklander LI, Caputo M, Solari A, Corach D. Genetic assignment of illegally trafficked neotropical primates and implications for reintroduction programs. Sci Rep 2020; 10:3676. [PMID: 32111905 PMCID: PMC7048725 DOI: 10.1038/s41598-020-60569-3] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2019] [Accepted: 02/12/2020] [Indexed: 11/09/2022] Open
Abstract
The black and gold howler monkey (Alouatta caraya) is a neotropical primate threatened by habitat loss and capture for illegal trade in Argentina. Using multilocus microsatellite genotypes from 178 A. caraya individuals sampled from 15 localities in Argentina, we built a genotype reference database (GRDB). Bayesian assignment methods applied to the GRDB allowed us to correctly re-assign 73% of individuals to their true location of origin and 93.3% to their cluster of origin. We used the GRDB to assign 22 confiscated individuals (17 of which were reintroduced), and 3 corpses to both localities and clusters of origin. We assigned with a probability >70% the locality of origin of 14 individuals and the cluster of origin of 21. We found that most of the confiscated individuals were assigned to one cluster (F-Ch-C) and two localities included in the GRDB, suggesting that trafficked A. caraya primarily originated in this area. Our results reveal that only 4 of 17 reintroduced individuals were released in sites corresponding to their cluster of origin. Our findings illustrate the applicability of genotype databases for inferring hotspots of illegal capture and for guiding future reintroduction efforts, both of which are essential elements of species protection and recovery programs.
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Affiliation(s)
- Luciana Inés Oklander
- Grupo de Investigación en Genética Aplicada (GIGA), Instituto de Biología Subtropical (IBS), Nodo Posadas, Jujuy 1745, N3300NFK Posadas, Universidad Nacional de Misiones (UNaM) - CONICET, Misiones, Argentina.
| | - Mariela Caputo
- Universidad de Buenos Aires, Facultad de Farmacia y Bioquímica, Departamento de Microbiología Inmunología Biotecnología y Genética, Cátedra de Genética Forense y Servicio de Huellas Digitales Genéticas, Junín 956, C1113AAD, Buenos Aires, Argentina.,CONICET - Consejo Nacional de Investigaciones Científicas y Tecnológicas, C1033AAJ, Buenos Aires, Argentina
| | - Agustín Solari
- Instituto de Biología Subtropical (IBS), Universidad Nacional de Misiones (UNaM) - CONICET, Nodo Iguazú, Bertoni 68, 3370, Puerto Iguazú, Misiones, Argentina
| | - Daniel Corach
- Universidad de Buenos Aires, Facultad de Farmacia y Bioquímica, Departamento de Microbiología Inmunología Biotecnología y Genética, Cátedra de Genética Forense y Servicio de Huellas Digitales Genéticas, Junín 956, C1113AAD, Buenos Aires, Argentina.,CONICET - Consejo Nacional de Investigaciones Científicas y Tecnológicas, C1033AAJ, Buenos Aires, Argentina
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41
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Borges D, Mariano-Neto E, Caribé D, Corrêa R, Gaiotto F. Changes in fine-scale spatial genetic structure related to protection status in Atlantic Rain Forest fragment. J Nat Conserv 2020. [DOI: 10.1016/j.jnc.2019.125784] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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42
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Population Genomics of Bettongia lesueur: Admixing Increases Genetic Diversity with no Evidence of Outbreeding Depression. Genes (Basel) 2019; 10:genes10110851. [PMID: 31661830 PMCID: PMC6896034 DOI: 10.3390/genes10110851] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2019] [Revised: 10/11/2019] [Accepted: 10/25/2019] [Indexed: 11/27/2022] Open
Abstract
Small and isolated populations are subject to the loss of genetic variation as a consequence of inbreeding and genetic drift, which in turn, can affect the fitness and long-term viability of populations. Translocations can be used as an effective conservation tool to combat this loss of genetic diversity through establishing new populations of threatened species, and to increase total population size. Releasing animals from multiple genetically diverged sources is one method to optimize genetic diversity in translocated populations. However, admixture as a conservation tool is rarely utilized due to the risks of outbreeding depression. Using high-resolution genomic markers through double-digest restriction site-associated sequencing (ddRAD-seq) and life history data collected over nine years of monitoring, this study investigates the genetic and fitness consequences of admixing two genetically-distinct subspecies of Bettongia lesueur in a conservation translocation. Using single nucleotide polymorphisms (SNPs) identified from 215 individuals from multiple generations, we found an almost 2-fold increase in genetic diversity in the admixed translocation population compared to the founder populations, and this was maintained over time. Furthermore, hybrid class did not significantly impact on survivorship or the recruitment rate and therefore we found no indication of outbreeding depression. This study demonstrates the beneficial application of mixing multiple source populations in the conservation of threatened species for minimizing inbreeding and enhancing adaptive potential and overall fitness.
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Jordan R, Breed MF, Prober SM, Miller AD, Hoffmann AA. How well do revegetation plantings capture genetic diversity? Biol Lett 2019; 15:20190460. [PMID: 31615374 DOI: 10.1098/rsbl.2019.0460] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022] Open
Abstract
Revegetation plantings are a key management tool for ecological restoration. Revegetation success is usually measured using ecological traits, however, genetic diversity should also be considered as it can influence fitness, adaptive capacity and long-term viability of revegetation plantings and ecosystem functioning. Here we review the global literature comparing genetic diversity in revegetation plantings to natural stands. Findings from 48 studies suggest variable genetic outcomes of revegetation, with 46% demonstrating higher genetic diversity in revegetation than natural stands and 52% demonstrating lower diversity. Levels of genetic diversity were most strongly associated with the number of source sites used-where information was available, 69% of studies showing higher genetic diversity in revegetation reported using multiple provenances, compared with only 33% for those with lower diversity. However, with a few exceptions, it was unclear whether differences in genetic diversity between revegetation and natural stands were statistically significant. This reflected insufficient reporting of statistical error and metadata within the published studies, which limited conclusions about factors contributing to patterns. Nonetheless, our findings indicate that mixed seed sourcing can contribute to higher genetic diversity in revegetation. Finally, we emphasize the type of metadata needed to determine factors influencing genetic diversity in revegetation and inform restoration efforts.
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Affiliation(s)
- Rebecca Jordan
- CSIRO, Land and Water, Sandy Bay, Tasmania 7005, Australia
| | - Martin F Breed
- School of Biological Sciences and the Environment Institute, Faculty of Sciences, University of Adelaide, Adelaide, South Australia 5005, Australia.,College of Science and Engineering, Flinders University, Adelaide, SA 5001, Australia
| | - Suzanne M Prober
- CSIRO, Land and Water, Floreat, Western Australia 6014, Australia
| | - Adam D Miller
- School of Life and Environmental Sciences, Centre for Integrative Ecology, Deakin University, Warrnambool, Victoria 3280, Australia.,Deakin Genomics Centre, Deakin University, Geelong, Victoria 3220, Australia
| | - Ary A Hoffmann
- Bio21 Institute, School of BioSciences, University of Melbourne, Parkville, Victoria 3052, Australia
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Dittberner H, Becker C, Jiao WB, Schneeberger K, Hölzel N, Tellier A, de Meaux J. Strengths and potential pitfalls of hay transfer for ecological restoration revealed by RAD-seq analysis in floodplain Arabis species. Mol Ecol 2019; 28:3887-3901. [PMID: 31338892 DOI: 10.1111/mec.15194] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2018] [Revised: 06/21/2019] [Accepted: 07/03/2019] [Indexed: 12/24/2022]
Abstract
Achieving high intraspecific genetic diversity is a critical goal in ecological restoration as it increases the adaptive potential and long-term resilience of populations. Thus, we investigated genetic diversity within and between pristine sites in a fossil floodplain and compared it to sites restored by hay transfer between 1997 and 2014. RAD-seq genotyping revealed that the stenoecious floodplain species Arabis nemorensis is co-occurring with individuals that, based on ploidy, ITS-sequencing and morphology, probably belong to the close relative Arabis sagittata, which has a documented preference for dry calcareous grasslands but has not been reported in floodplain meadows. We show that hay transfer maintains genetic diversity for both species. Additionally, in A. sagittata, transfer from multiple genetically isolated pristine sites resulted in restored sites with increased diversity and admixed local genotypes. In A. nemorensis, transfer did not create novel admixture dynamics because genetic diversity between pristine sites was less differentiated. Thus, the effects of hay transfer on genetic diversity also depend on the genetic make-up of the donor communities of each species, especially when local material is mixed. Our results demonstrate the efficiency of hay transfer for habitat restoration and emphasize the importance of prerestoration characterization of microgeographic patterns of intraspecific diversity of the community to guarantee that restoration practices reach their goal, that is maximize the adaptive potential of the entire restored plant community. Overlooking these patterns may alter the balance between species in the community. Additionally, our comparison of summary statistics obtained from de novo- and reference-based RAD-seq pipelines shows that the genomic impact of restoration can be reliably monitored in species lacking prior genomic knowledge.
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Affiliation(s)
| | - Christian Becker
- Cologne Center for Genomics, University of Cologne, Cologne, Germany
| | - Wen-Biao Jiao
- Max-Planck-Institute for Plant Breeding Research, Cologne, Germany
| | | | - Norbert Hölzel
- Institute of Landscape Ecology, University of Münster, Münster, Germany
| | - Aurélien Tellier
- Center of Life and Food Sciences Weihenstephan, Technical University of Munich, Freising, Germany
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45
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Breed MF, Harrison PA, Blyth C, Byrne M, Gaget V, Gellie NJC, Groom SVC, Hodgson R, Mills JG, Prowse TAA, Steane DA, Mohr JJ. The potential of genomics for restoring ecosystems and biodiversity. Nat Rev Genet 2019; 20:615-628. [PMID: 31300751 DOI: 10.1038/s41576-019-0152-0] [Citation(s) in RCA: 89] [Impact Index Per Article: 17.8] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/21/2019] [Indexed: 01/12/2023]
Abstract
Billions of hectares of natural ecosystems have been degraded through human actions. The global community has agreed on targets to halt and reverse these declines, and the restoration sector faces the important but arduous task of implementing programmes to meet these objectives. Existing and emerging genomics tools offer the potential to improve the odds of achieving these targets. These tools include population genomics that can improve seed sourcing, meta-omics that can improve assessment and monitoring of restoration outcomes, and genome editing that can generate novel genotypes for restoring challenging environments. We identify barriers to adopting these tools in a restoration context and emphasize that regulatory and ethical frameworks are required to guide their use.
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Affiliation(s)
- Martin F Breed
- School of Biological Sciences and the Environment Institute, University of Adelaide, North Terrace, South Australia, Australia.
| | - Peter A Harrison
- School of Natural Sciences, Australian Research Council Training Centre for Forest Value, University of Tasmania, Hobart, Tasmania, Australia
| | - Colette Blyth
- School of Biological Sciences and the Environment Institute, University of Adelaide, North Terrace, South Australia, Australia
| | - Margaret Byrne
- Biodiversity and Conservation Science, Department of Biodiversity, Conservation and Attractions, Western Australia, Australia
| | - Virginie Gaget
- School of Biological Sciences and the Environment Institute, University of Adelaide, North Terrace, South Australia, Australia
| | - Nicholas J C Gellie
- School of Biological Sciences and the Environment Institute, University of Adelaide, North Terrace, South Australia, Australia
| | - Scott V C Groom
- School of Agriculture, Food and Wine, The University of Adelaide, Waite Campus, Urrbrae, South Australia, Australia
| | - Riley Hodgson
- School of Biological Sciences and the Environment Institute, University of Adelaide, North Terrace, South Australia, Australia
| | - Jacob G Mills
- School of Biological Sciences and the Environment Institute, University of Adelaide, North Terrace, South Australia, Australia
| | - Thomas A A Prowse
- School of Biological Sciences and the Environment Institute, University of Adelaide, North Terrace, South Australia, Australia.,School of Mathematical Sciences, University of Adelaide, North Terrace, South Australia, Australia
| | - Dorothy A Steane
- School of Natural Sciences, Australian Research Council Training Centre for Forest Value, University of Tasmania, Hobart, Tasmania, Australia
| | - Jakki J Mohr
- College of Business, Institute on Ecosystems, University of Montana, Missoula, MT, USA
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46
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Wide outcrossing provides functional connectivity for new and old Banksia populations within a fragmented landscape. Oecologia 2019; 190:255-268. [DOI: 10.1007/s00442-019-04387-z] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2018] [Accepted: 03/19/2019] [Indexed: 10/27/2022]
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47
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Tso KL, Allan GJ. Environmental variation shapes genetic variation in Bouteloua gracilis: Implications for restoration management of natural populations and cultivated varieties in the southwestern United States. Ecol Evol 2019; 9:482-499. [PMID: 30680130 PMCID: PMC6342110 DOI: 10.1002/ece3.4767] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2018] [Revised: 09/14/2018] [Accepted: 11/02/2018] [Indexed: 11/17/2022] Open
Abstract
With the increasing frequency of large-scale restoration efforts, the need to understand the adaptive genetic structure of natural plant populations and their relation to heavily utilized cultivars is critical. Bouteloua gracilis (blue grama) is a wind-dispersed, perennial grass consisting of several cytotypes (2n = 2×-6×) with a widespread distribution in western North America. The species is locally dominant and used regularly in restoration treatments. Using amplified fragment length polymorphism (AFLP) and cpDNA analyses, we assessed the genetic variability and adaptive genetic structure of blue grama within and among 44 sampling sites that are representative of the species' environmental and habitat diversity in the southwestern United States. Five cultivars were also included to investigate genetic diversity and differentiation in natural versus cultivated populations. Three main findings resulted from this study: (a) Ninety-four polymorphic AFLP markers distinguished two population clusters defined largely by samples on and off the Colorado Plateau; (b) substructure of samples on the Colorado Plateau was indicated by genetic divergence between boundary and interior regions, and was supported by cytotype distribution and cpDNA analysis; and (c) six AFLP markers were identified as "outliers," consistent with being under selection. These loci were significantly correlated to mean annual temperature, mean annual precipitation, precipitation of driest quarter, and precipitation of wettest quarter in natural populations, but not in cultivated samples. Marker × environment relationships were found to be largely influenced by cytotype and cultivar development. Our results demonstrate that blue grama is genetically variable, and exhibits genetic structure, which is shaped, in part, by environmental variability across the Colorado Plateau. Information from our study can be used to guide the selection of seed source populations for commercial development and long-term conservation management of B. gracilis, which could include genetic assessments of diversity and the adaptive potential of both natural and cultivated populations for wildland restoration.
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Affiliation(s)
- Katrina L. Tso
- Department of Biological Sciences, Environmental Genetics & Genomics FacilityNorthern Arizona UniversityFlagstaffArizona
| | - Gerard J. Allan
- Department of Biological Sciences, Environmental Genetics & Genomics FacilityNorthern Arizona UniversityFlagstaffArizona
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48
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Zhao Z, Wei J, Zhang K, Li H, Wei S, Pan X, Huang W, Zhu M, Zhang R. Asymmetric response of different functional insect groups to low-grazing pressure in Eurasian steppe in Ningxia. Ecol Evol 2018; 8:11609-11618. [PMID: 30598760 PMCID: PMC6303718 DOI: 10.1002/ece3.4611] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2018] [Revised: 08/20/2018] [Accepted: 08/24/2018] [Indexed: 11/11/2022] Open
Abstract
In recent years, the continued loss and fragmentation of steppe has caused decreased ecosystem functions and species losses in insect diversity. In the 2000s, the Chinese government developed a series of national projects, such as the construction of enclosures, to conserve natural ecosystems, including steppe. However, the effects of these enclosures on steppe arthropod community are largely unknown. In the present study, we selected enclosed and low-grazing regions at eight National Grassland Fixed Monitoring Stations to examine the compositional differences in four insect functional groups and their associated ecological functions. The results showed that diversity significantly differed between the enclosed and low-grazing regions, with the number of insect families being significantly higher in enclosed regions than in regions with low-grazing pressure. The responses of the insect community to steppe management also varied among the four groups (herbivores, predators, parasitoids, and pollinators). The abundances of herbivores, predators, and parasitoids were higher in enclosed regions than in low-grazing regions, while there was no significant difference in pollinators. Additionally, there were no significant differences in the predator/prey ratio between enclosed regions and low-grazing regions in any of the steppe types. The parasitic wasp/prey ratio was higher in enclosed regions than in low-grazing regions in meadow steppe and typical steppe, while there were no significant differences between the enclosed and low-grazing regions in desert steppe and steppe desert. Herbivores were observed to benefit much more from enclosures than predators, parasitoids, and pollinators. Therefore, we recommend low-grazing should be considered in steppe conservation, which could conserve biodiversity and achieve biocontrol functions of arthropod community.
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Affiliation(s)
- Zihua Zhao
- Department of Entomology, College of Plant ProtectionChina Agricultural UniversityBeijingChina
| | - Jing Wei
- Department of Entomology, College of Plant ProtectionChina Agricultural UniversityBeijingChina
| | - Kaiyang Zhang
- Department of Entomology, College of Plant ProtectionChina Agricultural UniversityBeijingChina
| | - Hao Li
- Department of Entomology, College of Plant ProtectionChina Agricultural UniversityBeijingChina
| | - Shuhua Wei
- Institute of Plant ProtectionNingxia Academy of Agriculture and ForestryYinchuanChina
| | - Xubin Pan
- Institute of Plant QuarantineChinese Academy of Inspection and QuarantineBeijingChina
| | | | - Mengmeng Zhu
- Institute of Plant ProtectionNingxia Academy of Agriculture and ForestryYinchuanChina
| | - Rong Zhang
- Institute of Plant ProtectionNingxia Academy of Agriculture and ForestryYinchuanChina
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49
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Murphy C, Burnett S, Conroy GC, Howland BWA, Lamont RW, Sumner J, Ogbourne SM. Genetic diversity and structure of the threatened striped legless lizard, Delma impar: management implications for the species and a translocated population. CONSERV GENET 2018. [DOI: 10.1007/s10592-018-1127-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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50
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Rossetto M, Bragg J, Kilian A, McPherson H, van der Merwe M, Wilson PD. Restore and Renew: a genomics‐era framework for species provenance delimitation. Restor Ecol 2018. [DOI: 10.1111/rec.12898] [Citation(s) in RCA: 39] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Affiliation(s)
- Maurizio Rossetto
- National Herbarium of New South WalesRoyal Botanic Garden Sydney Mrs Macquaries Road, Sydney NSW 2000 Australia
| | - Jason Bragg
- National Herbarium of New South WalesRoyal Botanic Garden Sydney Mrs Macquaries Road, Sydney NSW 2000 Australia
| | - Andrzej Kilian
- Diversity Arrays TechnologyUniversity of Canberra Bruce ACT 2617 Australia
| | - Hannah McPherson
- National Herbarium of New South WalesRoyal Botanic Garden Sydney Mrs Macquaries Road, Sydney NSW 2000 Australia
| | - Marlien van der Merwe
- National Herbarium of New South WalesRoyal Botanic Garden Sydney Mrs Macquaries Road, Sydney NSW 2000 Australia
| | - Peter D. Wilson
- National Herbarium of New South WalesRoyal Botanic Garden Sydney Mrs Macquaries Road, Sydney NSW 2000 Australia
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