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Sellamuthu G, Naseer A, Hradecký J, Chakraborty A, Synek J, Modlinger R, Roy A. Gene expression plasticity facilitates different host feeding in Ips sexdentatus (Coleoptera: Curculionidae: Scolytinae). INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY 2024; 165:104061. [PMID: 38151136 DOI: 10.1016/j.ibmb.2023.104061] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2023] [Revised: 11/30/2023] [Accepted: 12/15/2023] [Indexed: 12/29/2023]
Abstract
Host shift is ecologically advantageous and a crucial driver for herbivore insect speciation. Insects on the non-native host obtain enemy-free space and confront reduced competition, but they must adapt to survive. Such signatures of adaptations can often be detected at the gene expression level. It is astonishing how bark beetles cope with distinct chemical environments while feeding on various conifers. Hence, we aim to disentangle the six-toothed bark beetle (Ips sexdentatus) response against two different conifer defences upon host shift (Scots pine to Norway spruce). We conducted bioassay and metabolomic analysis followed by RNA-seq experiments to comprehend the beetle's ability to surpass two different terpene-based conifer defence systems. Beetle growth rate and fecundity were increased when reared exclusively on spruce logs (alternative host) compared to pine logs (native host). Comparative gene expression analysis identified differentially expressed genes (DEGs) related to digestion, detoxification, transporter activity, growth, signalling, and stress response in the spruce-feeding beetle gut. Transporter genes were highly abundant during spruce feeding, suggesting they could play a role in pumping a wide variety of endogenous and xenobiotic compounds or allelochemicals out. Trehalose transporter (TRET) is also up-regulated in the spruce-fed beetle gut to maintain homeostasis and stress tolerance. RT-qPCR and enzymatic assays further corroborated some of our findings. Taken together, the transcriptional plasticity of key physiological genes plays a crucial role after the host shift and provides vital clues for the adaptive potential of bark beetles on different conifer hosts.
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Affiliation(s)
- Gothandapani Sellamuthu
- Czech University of Life Sciences Prague, Forest Molecular Entomology Lab, Faculty of Forestry & Wood Sciences, Kamýcká 129, Prague, 16500, Czech Republic; Czech University of Life Sciences Prague, Excellent Team for Mitigation (ETM), Faculty of Forestry & Wood Sciences, Kamýcká 129, Prague, 16500, Czech Republic
| | - Aisha Naseer
- Czech University of Life Sciences Prague, Forest Molecular Entomology Lab, Faculty of Forestry & Wood Sciences, Kamýcká 129, Prague, 16500, Czech Republic; Czech University of Life Sciences Prague, Excellent Team for Mitigation (ETM), Faculty of Forestry & Wood Sciences, Kamýcká 129, Prague, 16500, Czech Republic
| | - Jaromír Hradecký
- Czech University of Life Sciences Prague, Excellent Team for Mitigation (ETM), Faculty of Forestry & Wood Sciences, Kamýcká 129, Prague, 16500, Czech Republic
| | - Amrita Chakraborty
- Czech University of Life Sciences Prague, Forest Molecular Entomology Lab, Faculty of Forestry & Wood Sciences, Kamýcká 129, Prague, 16500, Czech Republic; Czech University of Life Sciences Prague, Forest Microbiome Team, Faculty of Forestry & Wood Sciences, Kamýcká 129, Prague, 16500, Czech Republic
| | - Jiří Synek
- Czech University of Life Sciences Prague, Excellent Team for Mitigation (ETM), Faculty of Forestry & Wood Sciences, Kamýcká 129, Prague, 16500, Czech Republic
| | - Roman Modlinger
- Czech University of Life Sciences Prague, Excellent Team for Mitigation (ETM), Faculty of Forestry & Wood Sciences, Kamýcká 129, Prague, 16500, Czech Republic
| | - Amit Roy
- Czech University of Life Sciences Prague, Forest Molecular Entomology Lab, Faculty of Forestry & Wood Sciences, Kamýcká 129, Prague, 16500, Czech Republic; Czech University of Life Sciences Prague, Excellent Team for Mitigation (ETM), Faculty of Forestry & Wood Sciences, Kamýcká 129, Prague, 16500, Czech Republic; Czech University of Life Sciences Prague, Forest Microbiome Team, Faculty of Forestry & Wood Sciences, Kamýcká 129, Prague, 16500, Czech Republic.
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He L, Shi Y, Ding W, Huang H, He H, Xue J, Gao Q, Zhang Z, Li Y, Qiu L. Cytochrome P450s genes CYP321A9 and CYP9A58 contribute to host plant adaptation in the fall armyworm Spodoptera frugiperda. PEST MANAGEMENT SCIENCE 2023; 79:1783-1790. [PMID: 36627818 DOI: 10.1002/ps.7355] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2022] [Revised: 12/25/2022] [Accepted: 01/11/2023] [Indexed: 06/17/2023]
Abstract
BACKGROUND The fall armyworm, Spodoptera frugiperda is one of the most destructive agricultural pests, which can complete their entire life cycle on various plants. At present, some detoxification genes have been proved to be involved in the adaptability to plants in insects. However, the genetics behind insect pest responses to host switches, and their ability to adapt to new host plants, remain poorly understood. This study was conducted to evaluate the adaptation of S. frugiperda to host plant and determine the roles of CYP321A9 and CYP9A58 in the detoxification metabolism of the fall armyworm. RESULTS The results revealed that feeding on maize was more suitable for S. frugiperda to develop compared with rice. In addition, knocking down of SfCYP321A9 and SfCYP9A58 resulted in a prolonged developmental time of S. frugiperda larvae that fed on rice. Meanwhile, RNAi knockdown of SfCYP321A9 resulted in significantly higher mortality of S. frugiperda larvae when exposed to the rice allelochemicals, ferulic acid, gramine and tricin. Furthermore, overexpression of SfCYP321A9 significantly reduced mortality in Drosophila melanogaster when exposed to gramine and tricin. CONCLUSION Our results suggest that CYP321A9 and CYP9A58 genes play a key role in host plant adaptation in S. frugiperda, which contribute to a greater understanding of the molecular basis of host plant adaptation and provide the means to develop effective management tools for S. frugiperda resistance. © 2023 Society of Chemical Industry.
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Affiliation(s)
- Li He
- Hunan Provincial Key Laboratory for Biology and Control of Plant Diseases and Insect Pests, College of Plant Protection, Hunan Agricultural University, Changsha, China
| | - Yang Shi
- Hunan Provincial Key Laboratory for Biology and Control of Plant Diseases and Insect Pests, College of Plant Protection, Hunan Agricultural University, Changsha, China
| | - Wenbing Ding
- National Research Center of Engineering & Technology for Utilization of Botanical Functional Ingredients, Hunan Agricultural University, Changsha, China
- Hunan Provincial Engineering & Technology Research Center for Biopesticide and Formulation Processing, Changsha, China
| | - Hong Huang
- Hunan Institute of Plant Protection, Changsha, China
| | - Hualiang He
- Hunan Provincial Key Laboratory for Biology and Control of Plant Diseases and Insect Pests, College of Plant Protection, Hunan Agricultural University, Changsha, China
| | - Jin Xue
- Hunan Provincial Key Laboratory for Biology and Control of Plant Diseases and Insect Pests, College of Plant Protection, Hunan Agricultural University, Changsha, China
| | - Qiao Gao
- Hunan Provincial Key Laboratory for Biology and Control of Plant Diseases and Insect Pests, College of Plant Protection, Hunan Agricultural University, Changsha, China
| | - Zhixiang Zhang
- College of Plant Protection, South China Agricultural University, Guangzhou, China
| | - Youzhi Li
- Hunan Provincial Key Laboratory for Biology and Control of Plant Diseases and Insect Pests, College of Plant Protection, Hunan Agricultural University, Changsha, China
- National Research Center of Engineering & Technology for Utilization of Botanical Functional Ingredients, Hunan Agricultural University, Changsha, China
| | - Lin Qiu
- Hunan Provincial Key Laboratory for Biology and Control of Plant Diseases and Insect Pests, College of Plant Protection, Hunan Agricultural University, Changsha, China
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Moreyra NN, Almeida FC, Allan C, Frankel N, Matzkin LM, Hasson E. Phylogenomics provides insights into the evolution of cactophily and host plant shifts in Drosophila. Mol Phylogenet Evol 2023; 178:107653. [PMID: 36404461 DOI: 10.1016/j.ympev.2022.107653] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2022] [Revised: 09/30/2022] [Accepted: 10/25/2022] [Indexed: 11/06/2022]
Abstract
Cactophilic species of the Drosophila buzzatii cluster (repleta group) comprise an excellent model group to investigate genomic changes underlying adaptation to extreme climate conditions and host plants. In particular, these species form a tractable system to study the transition from chemically simpler breeding sites (like prickly pears of the genus Opuntia) to chemically more complex hosts (columnar cacti). Here, we report four highly contiguous genome assemblies of three species of the buzzatii cluster. Based on this genomic data and inferred phylogenetic relationships, we identified candidate taxonomically restricted genes (TRGs) likely involved in the evolution of cactophily and cactus host specialization. Functional enrichment analyses of TRGs within the buzzatii cluster identified genes involved in detoxification, water preservation, immune system response, anatomical structure development, and morphogenesis. In contrast, processes that regulate responses to stress, as well as the metabolism of nitrogen compounds, transport, and secretion were found in the set of species that are columnar cacti dwellers. These findings are in line with the hypothesis that those genomic changes brought about key mechanisms underlying the adaptation of the buzzatii cluster species to arid regions in South America.
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Affiliation(s)
- Nicolás Nahuel Moreyra
- Departamento de Ecología, Genética y Evolución (EGE), Facultad de Ciencias Exactas y Naturales (FCEyN), Universidad de Buenos Aires (UBA), Ciudad Autónoma de Buenos Aires C1428EGA, Argentina; Instituto de Ecología, Genética y Evolución de Buenos Aires (IEGEBA), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Ciudad Autónoma de Buenos Aires C1428EGA, Argentina.
| | - Francisca Cunha Almeida
- Departamento de Ecología, Genética y Evolución (EGE), Facultad de Ciencias Exactas y Naturales (FCEyN), Universidad de Buenos Aires (UBA), Ciudad Autónoma de Buenos Aires C1428EGA, Argentina; Instituto de Ecología, Genética y Evolución de Buenos Aires (IEGEBA), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Ciudad Autónoma de Buenos Aires C1428EGA, Argentina.
| | - Carson Allan
- Department of Entomology, University of Arizona, Tucson, AZ 85719, USA.
| | - Nicolás Frankel
- Departamento de Ecología, Genética y Evolución (EGE), Facultad de Ciencias Exactas y Naturales (FCEyN), Universidad de Buenos Aires (UBA), Ciudad Autónoma de Buenos Aires C1428EGA, Argentina; Instituto de Ecología, Genética y Evolución de Buenos Aires (IEGEBA), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Ciudad Autónoma de Buenos Aires C1428EGA, Argentina.
| | | | - Esteban Hasson
- Departamento de Ecología, Genética y Evolución (EGE), Facultad de Ciencias Exactas y Naturales (FCEyN), Universidad de Buenos Aires (UBA), Ciudad Autónoma de Buenos Aires C1428EGA, Argentina; Instituto de Ecología, Genética y Evolución de Buenos Aires (IEGEBA), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Ciudad Autónoma de Buenos Aires C1428EGA, Argentina.
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Drum Z, Lanno S, Gregory SM, Shimshak S, Barr W, Gatesman A, Schadt M, Sanford J, Arkin A, Assignon B, Colorado S, Dalgarno C, Devanny T, Ghandour T, Griffin R, Hogan M, Horowitz E, McGhie E, Multer J, O'Halloran H, Ofori-Darko K, Pokushalov D, Richards N, Sagarin K, Taylor N, Thielking A, Towle P, Coolon J. Genomics analysis of Drosophila sechellia response to Morinda citrifolia fruit diet. G3 (BETHESDA, MD.) 2022; 12:jkac153. [PMID: 35736356 PMCID: PMC9526069 DOI: 10.1093/g3journal/jkac153] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/21/2021] [Accepted: 05/24/2022] [Indexed: 11/20/2022]
Abstract
Drosophila sechellia is an island endemic host specialist that has evolved to consume the toxic fruit of Morinda citrifolia, also known as noni fruit. Recent studies by our group and others have examined genome-wide gene expression responses of fruit flies to individual highly abundant compounds found in noni responsible for the fruit's unique chemistry and toxicity. In order to relate these reductionist experiments to the gene expression responses to feeding on noni fruit itself, we fed rotten noni fruit to adult female D. sechellia and performed RNA-sequencing. Combining the reductionist and more wholistic approaches, we have identified candidate genes that may contribute to each individual compound and those that play a more general role in response to the fruit as a whole. Using the compound specific and general responses, we used transcription factor prediction analyses to identify the regulatory networks and specific regulators involved in the responses to each compound and the fruit itself. The identified genes and regulators represent the possible genetic mechanisms and biochemical pathways that contribute to toxin resistance and noni specialization in D. sechellia.
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Affiliation(s)
- Zachary Drum
- Department of Biology, Wesleyan University, Middletown, CT 06457, USA
| | - Stephen Lanno
- Department of Biology, Wesleyan University, Middletown, CT 06457, USA
| | - Sara M Gregory
- Department of Biology, Wesleyan University, Middletown, CT 06457, USA
| | - Serena Shimshak
- Department of Biology, Wesleyan University, Middletown, CT 06457, USA
| | - Will Barr
- Department of Biology, Wesleyan University, Middletown, CT 06457, USA
| | - Austin Gatesman
- Department of Biology, Wesleyan University, Middletown, CT 06457, USA
| | - Mark Schadt
- Department of Biology, Wesleyan University, Middletown, CT 06457, USA
| | - Jack Sanford
- Department of Biology, Wesleyan University, Middletown, CT 06457, USA
| | - Aaron Arkin
- Department of Biology, Wesleyan University, Middletown, CT 06457, USA
| | - Brynn Assignon
- Department of Biology, Wesleyan University, Middletown, CT 06457, USA
| | - Sofia Colorado
- Department of Biology, Wesleyan University, Middletown, CT 06457, USA
| | - Carol Dalgarno
- Department of Biology, Wesleyan University, Middletown, CT 06457, USA
| | - Trevor Devanny
- Department of Biology, Wesleyan University, Middletown, CT 06457, USA
| | - Tara Ghandour
- Department of Biology, Wesleyan University, Middletown, CT 06457, USA
| | - Rose Griffin
- Department of Biology, Wesleyan University, Middletown, CT 06457, USA
| | - Mia Hogan
- Department of Biology, Wesleyan University, Middletown, CT 06457, USA
| | - Erica Horowitz
- Department of Biology, Wesleyan University, Middletown, CT 06457, USA
| | - Emily McGhie
- Department of Biology, Wesleyan University, Middletown, CT 06457, USA
| | - Jake Multer
- Department of Biology, Wesleyan University, Middletown, CT 06457, USA
| | - Hannah O'Halloran
- Department of Biology, Wesleyan University, Middletown, CT 06457, USA
| | - Kofi Ofori-Darko
- Department of Biology, Wesleyan University, Middletown, CT 06457, USA
| | - Dmitry Pokushalov
- Department of Biology, Wesleyan University, Middletown, CT 06457, USA
| | - Nick Richards
- Department of Biology, Wesleyan University, Middletown, CT 06457, USA
| | - Kathleen Sagarin
- Department of Biology, Wesleyan University, Middletown, CT 06457, USA
| | - Nicholas Taylor
- Department of Biology, Wesleyan University, Middletown, CT 06457, USA
| | - Acadia Thielking
- Department of Biology, Wesleyan University, Middletown, CT 06457, USA
| | - Phie Towle
- Department of Biology, Wesleyan University, Middletown, CT 06457, USA
| | - Joseph Coolon
- Department of Biology, Wesleyan University, Middletown, CT 06457, USA
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5
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Rondón JJ, Moreyra NN, Pisarenco VA, Rozas J, Hurtado J, Hasson E. Evolution of the odorant-binding protein gene family in Drosophila. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.957247] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Odorant-binding proteins (OBPs) are encoded by a gene family involved in the perception of olfactory signals in insects. This chemosensory gene family has been advocated as a candidate to mediate host preference and host shifts in insects, although it also participates in other physiological processes. Remarkable differences in the OBP gene repertoire have been described across insect groups, suggesting an accelerated gene turnover rate. The genus Drosophila, is a valuable resource for ecological genomics studies since it comprises groups of ecologically diverse species and there are genome data for many of them. Here, we investigate the molecular evolution of this chemosensory gene family across 19 Drosophila genomes, including the melanogaster and repleta species groups, which are mostly associated with rotting fruit and cacti, respectively. We also compared the OBP repertoire among the closely related species of the repleta group, associated with different subfamilies of Cactaceae that represent disparate chemical challenges for the flies. We found that the gene family size varies widely between species, ranging from 39 to 54 candidate OBPs. Indeed, more than 54% of these genes are organized in clusters and located on chromosomes X, 2, and 5, with a distribution conserved throughout the genus. The family sizes in the repleta group and D. virilis (virilis-repleta radiation) were smaller than in the melanogaster group. We tested alternative evolutionary models for OBP family size and turnover rates based on different ecological scenarios. We found heterogeneous gene turnover rates (GR) in comparisons involving columnar cactus specialists, prickly pear specialists, and fruit dwellers lineages, and signals of rapid molecular evolution compatible with positive selection in specific OBP genes. Taking ours and previous results together, we propose that this chemosensory gene family is involved in host adaptation and hypothesize that the adoption of the cactophilic lifestyle in the repleta group accelerated the evolution of members of the family.
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6
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Padró J, De Panis DN, Luisi P, Dopazo H, Szajnman S, Hasson E, Soto IM. Ortholog genes from cactophilic Drosophila provide insight into human adaptation to hallucinogenic cacti. Sci Rep 2022; 12:13180. [PMID: 35915153 PMCID: PMC9343604 DOI: 10.1038/s41598-022-17118-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2021] [Accepted: 07/20/2022] [Indexed: 11/18/2022] Open
Abstract
Cultural transformations of lifestyles and dietary practices have been key drivers of human evolution. However, while most of the evidence of genomic adaptations is related to the hunter-gatherer transition to agricultural societies, little is known on the influence of other major cultural manifestations. Shamanism is considered the oldest religion that predominated throughout most of human prehistory and still prevails in many indigenous populations. Several lines of evidence from ethno-archeological studies have demonstrated the continuity and importance of psychoactive plants in South American cultures. However, despite the well-known importance of secondary metabolites in human health, little is known about its role in the evolution of ethnic differences. Herein, we identified candidate genes of adaptation to hallucinogenic cactus in Native Andean populations with a long history of shamanic practices. We used genome-wide expression data from the cactophilic fly Drosophila buzzatii exposed to a hallucinogenic columnar cactus, also consumed by humans, to identify ortholog genes exhibiting adaptive footprints of alkaloid tolerance. Genomic analyses in human populations revealed a suite of ortholog genes evolving under recent positive selection in indigenous populations of the Central Andes. Our results provide evidence of selection in genetic variants related to alkaloids toxicity, xenobiotic metabolism, and neuronal plasticity in Aymara and Quechua populations, suggesting a possible process of gene-culture coevolution driven by religious practices.
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Affiliation(s)
- Julian Padró
- INIBIOMA-CONICET, Universidad Nacional del Comahue, Quintral 1250, R8400FRF, San Carlos de Bariloche, Argentina.
| | - Diego N De Panis
- IEGEBA-CONICET, Departamento de Ecología, Genética y Evolución, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, Intendente Güiraldes 2160, C1428EHA, Buenos Aires, Argentina
| | - Pierre Luisi
- Facultad de Filosofía y Humanidades, Universidad Nacional de Córdoba (FFyH-UNC), Córdoba, Argentina.,Microbial Paleogenomics Unit, Institut Pasteur, 25-28 Rue du Dr Roux, 75015, Paris, France
| | - Hernan Dopazo
- IEGEBA-CONICET, Departamento de Ecología, Genética y Evolución, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, Intendente Güiraldes 2160, C1428EHA, Buenos Aires, Argentina
| | - Sergio Szajnman
- Departamento de Química Orgánica and UMYMFOR (CONICET-FCEyN), Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, Intendente Güiraldes 2160, C1428EHA, Buenos Aires, Argentina
| | - Esteban Hasson
- IEGEBA-CONICET, Departamento de Ecología, Genética y Evolución, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, Intendente Güiraldes 2160, C1428EHA, Buenos Aires, Argentina
| | - Ignacio M Soto
- IEGEBA-CONICET, Departamento de Ecología, Genética y Evolución, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, Intendente Güiraldes 2160, C1428EHA, Buenos Aires, Argentina
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7
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De Panis D, Dopazo H, Bongcam-Rudloff E, Conesa A, Hasson E. Transcriptional responses are oriented towards different components of the rearing environment in two Drosophila sibling species. BMC Genomics 2022; 23:515. [PMID: 35840900 PMCID: PMC9288027 DOI: 10.1186/s12864-022-08745-9] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2021] [Accepted: 07/01/2022] [Indexed: 11/26/2022] Open
Abstract
Background The chance to compare patterns of differential gene expression in related ecologically distinct species can be particularly fruitful to investigate the genetics of adaptation and phenotypic plasticity. In this regard, a powerful technique such as RNA-Seq applied to ecologically amenable taxa allows to address issues that are not possible in classic model species. Here, we study gene expression profiles and larval performance of the cactophilic siblings Drosophila buzzatii and D. koepferae reared in media that approximate natural conditions and evaluate both chemical and nutritional components of the diet. These closely related species are complementary in terms of host-plant use since the primary host of one is the secondary of the other. D. koepferae is mainly a columnar cactus dweller while D. buzzatii prefers Opuntia hosts. Results Our comparative study shows that D. buzzatii and D. koepferae have different transcriptional strategies to face the challenges posed by their natural resources. The former has greater transcriptional plasticity, and its response is mainly modulated by alkaloids of its secondary host, while the latter has a more canalized genetic response, and its transcriptional plasticity is associated with the cactus species. Conclusions Our study unveils a complex pleiotropic genetic landscape in both species, with functional links that relate detox responses and redox mechanisms with developmental and neurobiological processes. These results contribute to deepen our understanding of the role of host plant shifts and natural stress driving ecological specialization. Supplementary Information The online version contains supplementary material available at 10.1186/s12864-022-08745-9.
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Affiliation(s)
- D De Panis
- Instituto de Ecología, Genética y Evolución de Buenos Aires, Consejo Nacional de Investigaciones Científicas y Técnicas, Ciudad Autónoma de Buenos Aires, Argentina
| | - H Dopazo
- Instituto de Ecología, Genética y Evolución de Buenos Aires, Consejo Nacional de Investigaciones Científicas y Técnicas, Ciudad Autónoma de Buenos Aires, Argentina.,Departamento de Ecología, Genética y Evolución, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Autónoma de Buenos Aires, Argentina
| | - E Bongcam-Rudloff
- SLU-Global Bioinformatics Centre, Department of Animal Breeding and Genetics, Swedish University of Agricultural Sciences, Uppsala, Sweden
| | - A Conesa
- Microbiology and Cell Science Department, University of Florida, Gainesville, Florida, USA
| | - E Hasson
- Instituto de Ecología, Genética y Evolución de Buenos Aires, Consejo Nacional de Investigaciones Científicas y Técnicas, Ciudad Autónoma de Buenos Aires, Argentina. .,Departamento de Ecología, Genética y Evolución, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Autónoma de Buenos Aires, Argentina.
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Barrios-Leal DY, Mateus RP, Santos CG, Manfrin MH. Plastic Variation in the Phyletic Lineages of Cactophilic Drosophila meridionalis and Relation to Hosts as Potential for Diversification. NEOTROPICAL ENTOMOLOGY 2021; 50:515-523. [PMID: 33846963 DOI: 10.1007/s13744-021-00866-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/12/2020] [Accepted: 03/11/2021] [Indexed: 06/12/2023]
Abstract
The insect/plant interaction is known to be a trigger for diversification and even speciation. Experimental analyses on fitness traits and phenotypic variation using alternative host sites have been performed to understand the process of diversification relative to insect/plant interactions. For cactophilic species of Drosophila, the speciation process is considered an adaptive radiation in response to the exploration of species of the Cactaceae as breeding and feeding sites. In this work, we analyzed life history and morphological traits in individuals from two phyletic lineages (Evolutionarily Significant Units ESU) of the cactophilic species Drosophila meridionalis (Wasserman 1962) (Diptera: Drosophilidae) raised from media prepare. The characters analyzed corresponded to viability, developmental time, and four morphological measurements. The experiments were performed in a semi-natural medium prepared with fermenting tissues of the natural hosts, Cereus hildmaniannus and Opuntia monacantha. Viability, development time, and three morphological measurements were influenced by lineage, suggesting differentiation between the lineages. However, in O. monacantha, the mean viability was greater (~15%) and development time was longer (~336 h) than in C. hildmaniannus (~11% and ~301 h, respectively). Only the developmental time was significantly affected by the host cactus. In general, ESU group A had better values than ESU group BC for the evaluated traits. This finding suggested differentiation between the two lineages and different plastic responsiveness to the contrasting environments of the hosts, and that C. hildmaniannus may be a relatively stressful environment for the larvae, as for other Drosophila species.
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Affiliation(s)
- Dora Yovana Barrios-Leal
- Pós-Graduação em Genética - Faculdade de Medicina de Ribeirão Preto, Univ de São Paulo, Ribeirão Preto, Brazil
| | - Rogério P Mateus
- Depto de Ciências Biológicas - DEBIO, Univ Estadual do Centro-Oeste - UNICENTRO, Paraná, Brazil
| | - Cintia Graziela Santos
- Pós-Graduação em Biologia Comparada - Faculdade de Filosofia, Ciências e Letras de Ribeirão Preto, Univ de São Paulo, Ribeirão Preto, Brazil
| | - Maura Helena Manfrin
- Pós-Graduação em Genética - Faculdade de Medicina de Ribeirão Preto, Univ de São Paulo, Ribeirão Preto, Brazil.
- Depto de Biologia - Faculdade de Filosofia, Ciências e Letras de Ribeirão Preto, Univ de São Paulo, Ribeirão Preto, Brazil.
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A de novo transcriptional atlas in Danaus plexippus reveals variability in dosage compensation across tissues. Commun Biol 2021; 4:791. [PMID: 34172835 PMCID: PMC8233437 DOI: 10.1038/s42003-021-02335-3] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2020] [Accepted: 06/09/2021] [Indexed: 02/06/2023] Open
Abstract
A detailed knowledge of gene function in the monarch butterfly is still lacking. Here we generate a genome assembly from a Mexican nonmigratory population and used RNA-seq data from 14 biological samples for gene annotation and to construct an atlas portraying the breadth of gene expression during most of the monarch life cycle. Two thirds of the genes show expression changes, with long noncoding RNAs being particularly finely regulated during adulthood, and male-biased expression being four times more common than female-biased. The two portions of the monarch heterochromosome Z, one ancestral to the Lepidoptera and the other resulting from a chromosomal fusion, display distinct association with sex-biased expression, reflecting sample-dependent incompleteness or absence of dosage compensation in the ancestral but not the novel portion of the Z. This study presents extended genomic and transcriptomic resources that will facilitate a better understanding of the monarch's adaptation to a changing environment.
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Hou Z, Shi F, Ge S, Tao J, Ren L, Wu H, Zong S. Comparative transcriptome analysis of the newly discovered insect vector of the pine wood nematode in China, revealing putative genes related to host plant adaptation. BMC Genomics 2021; 22:189. [PMID: 33726671 PMCID: PMC7968331 DOI: 10.1186/s12864-021-07498-1] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2020] [Accepted: 03/02/2021] [Indexed: 02/06/2023] Open
Abstract
BACKGROUND In many insect species, the larvae/nymphs are unable to disperse far from the oviposition site selected by adults. The Sakhalin pine sawyer Monochamus saltuarius (Gebler) is the newly discovered insect vector of the pine wood nematode (Bursaphelenchus xylophilus) in China. Adult M. saltuarius prefers to oviposit on the host plant Pinus koraiensis, rather than P. tabuliformis. However, the genetic basis of adaptation of the larvae of M. saltuarius with weaken dispersal ability to host environments selected by the adult is not well understood. RESULTS In this study, the free amino and fatty acid composition and content of the host plants of M. saltuarius larvae, i.e., P. koraiensis and P. tabuliformis were investigated. Compared with P. koraiensis, P. tabuliformis had a substantially higher content of various free amino acids, while the opposite trend was detected for fatty acid content. The transcriptional profiles of larval populations feeding on P. koraiensis and P. tabuliformis were compared using PacBio Sequel II sequencing combined with Illumina sequencing. The results showed that genes relating to digestion, fatty acid synthesis, detoxification, oxidation-reduction, and stress response, as well as nutrients and energy sensing ability, were differentially expressed, possibly reflecting adaptive changes of M. saltuarius in response to different host diets. Additionally, genes coding for cuticle structure were differentially expressed, indicating that cuticle may be a potential target for plant defense. Differential regulation of genes related to the antibacterial and immune response were also observed, suggesting that larvae of M. saltuarius may have evolved adaptations to cope with bacterial challenges in their host environments. CONCLUSIONS The present study provides comprehensive transcriptome resource of M. saltuarius relating to host plant adaptation. Results from this study help to illustrate the fundamental relationship between transcriptional plasticity and adaptation mechanisms of insect herbivores to host plants.
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Affiliation(s)
- Zehai Hou
- Key Laboratory of Beijing for the Control of Forest Pests, Beijing Forestry University, Beijing, China
| | - Fengming Shi
- Key Laboratory of Beijing for the Control of Forest Pests, Beijing Forestry University, Beijing, China
| | - Sixun Ge
- Key Laboratory of Beijing for the Control of Forest Pests, Beijing Forestry University, Beijing, China
| | - Jing Tao
- Key Laboratory of Beijing for the Control of Forest Pests, Beijing Forestry University, Beijing, China
| | - Lili Ren
- Key Laboratory of Beijing for the Control of Forest Pests, Beijing Forestry University, Beijing, China
| | - Hao Wu
- Liaoning Provincial Key Laboratory of Dangerous Forest Pest Management and Control, Shenyang, China
| | - Shixiang Zong
- Key Laboratory of Beijing for the Control of Forest Pests, Beijing Forestry University, Beijing, China.
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11
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Jia S, Li Y, Dai X, Li X, Zhou Y, Xu Y, Wang H. Physiological adaptations to sugar-mimic alkaloids: Insights from Bombyx mori for long-term adaption and short-term response. Ecol Evol 2020; 10:9682-9695. [PMID: 33005339 PMCID: PMC7520222 DOI: 10.1002/ece3.6574] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2020] [Revised: 06/11/2020] [Accepted: 06/15/2020] [Indexed: 12/24/2022] Open
Abstract
Insects evolved adaptive plasticity to minimize the effects of the chemical defenses of their host plants. Nevertheless, the expressional response and adaptation of phytophagous specialists for long-term adaption and short-term response to host phytochemicals remains largely unexplored. The mulberry (Morus alba)-silkworm (Bombyx mori) interaction is an old and well-known model of plant-insect interaction. In this study, we examined the long-term adaption and short-term response of the mulberry-specialist silkworm to two sugar-mimic alkaloids in mulberry: the commonly encountered 1-deoxynojirimycin (1-DNJ) and occasionally encountered 1,4-dideoxy-1,4-imino-D-arabinitol (D-AB1), respectively. Global transcriptional patterns revealed that the physiological responses induced by the selective expression of genes involved in manifold cellular processes, including detoxification networks, canonical digestion processes, target enzymes, and other fundamental physiological processes, were crucial for regulating metabolic homeostasis. Comparative network analysis of the effects of exposure to D-AB1 and 1-DNJ supported the contention that B. mori produced similar and specific trajectories of changed gene expression in response to different sugar-mimic alkaloids. D-AB1 elicited a substantial proportion of downregulated genes relating to carbohydrate metabolism, catabolic process, lipid metabolism, and glycan biosynthesis and metabolism. This study dramatically expands our knowledge of the physiological adaptations to dietary sugar-mimic alkaloid intake and uncovered both metabolic evolutionarily responses and unique adaptive mechanisms previously unknown in insects.
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Affiliation(s)
- Shunze Jia
- College of Animal Sciences Zhejiang University Hangzhou China
| | - Yinghui Li
- College of Animal Sciences Zhejiang University Hangzhou China
| | - Xiangping Dai
- College of Animal Sciences Zhejiang University Hangzhou China
| | - Xiaotong Li
- College of Animal Sciences Zhejiang University Hangzhou China
| | - Yanyan Zhou
- College of Animal Sciences Zhejiang University Hangzhou China
| | - Yusong Xu
- College of Animal Sciences Zhejiang University Hangzhou China
| | - Huabing Wang
- College of Animal Sciences Zhejiang University Hangzhou China
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12
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Barrios-Leal DY, Neves-da-Rocha J, Manfrin MH. Genetics and Distribution Modeling: The Demographic History of the Cactophilic Drosophila buzzatii Species Cluster in Open Areas of South America. J Hered 2020; 110:22-33. [PMID: 30252085 DOI: 10.1093/jhered/esy042] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2018] [Accepted: 08/10/2018] [Indexed: 11/14/2022] Open
Abstract
Biodiversity is the result of historical and recurrent events acting on populations and species. The Drosophila buzzatii species cluster is distributed along a diagonal of open areas in South America. Combining genetic analyses with species distribution models we evaluated the influence of climatic changes in the demography history of this cluster. We performed a Bayesian Skyline analysis and reconstructed the ancestral areas based on mitochondrial cytochrome oxidase I (mtCOI) gene. We modeled the current distribution and projected it to past (mid-Holocene and Last Glacial Maximum) and future. Our results demonstrate that climate change plays a critical role in historical demography and in defining the current and future geographic ranges of these species. The inter-Andean dry valleys and the Chiquitano Seasonally Dry Tropical Forests (SDTF) in Bolivia are considered the ancestral area for the D. buzzatii cluster. From this area, the migration route was through a west-east corridor from central Andes, throughout Bolivia, Paraguay and Argentina toward eastern and northeastern Brazil, along the edges of rain forest. The responses of the species to the climatic changes differ from the dominant assumptions of expansion during dry/cold weather and contraction during wet/warm weather that characterized the glacial cycles. We suggest that the influence of ecology and the potential responsiveness of each taxon to the environmental dynamics should be considered as well. Predictions for the future suggest a decline of suitable areas for the cluster, threatening biodiversity of these habitats. This work showed the importance of an integrative analysis of genetics and geography information to improve the inferences about demographic history hypotheses for the cluster.
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Affiliation(s)
- Dora Yovana Barrios-Leal
- Pós-Graduação, Departamento Genética, FMRP, Universidade de São Paulo, Ribeirão Preto, SP, Brazil
| | - João Neves-da-Rocha
- Departamento de Biologia, FFCLRP, Universidade de São Paulo, Av. Bandeirantes, Bairro Monte Alegre, Ribeirão Preto, SP, Brazil
| | - Maura Helena Manfrin
- Pós-Graduação, Departamento Genética, FMRP, Universidade de São Paulo, Ribeirão Preto, SP, Brazil.,Departamento de Biologia, FFCLRP, Universidade de São Paulo, Av. Bandeirantes, Bairro Monte Alegre, Ribeirão Preto, SP, Brazil
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13
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Etges WJ. Evolutionary genomics of host plant adaptation: insights from Drosophila. CURRENT OPINION IN INSECT SCIENCE 2019; 36:96-102. [PMID: 31542627 DOI: 10.1016/j.cois.2019.08.011] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2019] [Revised: 08/13/2019] [Accepted: 08/19/2019] [Indexed: 06/10/2023]
Abstract
Variation in gene expression in response to the use of alternate host plants can reveal genetic and physiological mechanisms explaining why insect-host relationships vary from host specialism to generalism. Interpreting transcriptome variation relies on well-annotated genomes, making drosophilids valuable model systems, particularly those species with tractable ecological associations. Patterns of whole genome expression and alternate gene splicing in response to growth on different hosts have revealed expression of gene networks of known detoxification genes as well as novel functionally enriched genes of diverse metabolic and structural functions. Integrating trancriptomic responses with fitness differences and levels of phenotypic plasticity in response to alternate hosts will help to reveal the general nature of genotype-phenotype relationships.
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Affiliation(s)
- William J Etges
- Ecology, Evolution and Organismal Biology, Department of Biological Sciences, SCEN 632, 1 University of Arkansas, Fayetteville, AR 72701, USA.
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14
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Gene Expression and Diet Breadth in Plant-Feeding Insects: Summarizing Trends. Trends Ecol Evol 2019; 35:259-277. [PMID: 31791830 DOI: 10.1016/j.tree.2019.10.014] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2019] [Revised: 10/18/2019] [Accepted: 10/29/2019] [Indexed: 11/20/2022]
Abstract
Transcriptomic studies lend insights into the role of transcriptional plasticity in adaptation and specialization. Recently, there has been growing interest in understanding the relationship between variation in herbivorous insect gene expression and the evolution of diet breadth. We review the studies that have emerged on insect gene expression and host plant use, and outline the questions and approaches in the field. Many candidate genes underlying herbivory and specialization have been identified, and a few key studies demonstrate increased transcriptional plasticity associated with generalist compared with specialist species. Addressing the roles that transcriptional variation plays in insect diet breadth will have important implications for our understanding of the evolution of specialization and the genetic and environmental factors that govern insect-plant interactions.
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15
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What does mitogenomics tell us about the evolutionary history of the Drosophila buzzatii cluster (repleta group)? PLoS One 2019; 14:e0220676. [PMID: 31697700 PMCID: PMC6837510 DOI: 10.1371/journal.pone.0220676] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2019] [Accepted: 10/01/2019] [Indexed: 12/05/2022] Open
Abstract
The Drosophila repleta group is an array of more than 100 species endemic to the “New World”, many of which are cactophilic. The ability to utilize decaying cactus tissues as breeding and feeding sites is a key aspect that allowed the successful diversification of the repleta group in American deserts and arid lands. Within this group, the Drosophila buzzatii cluster is a South American clade of seven closely related species in different stages of divergence, making them a valuable model system for evolutionary research. Substantial effort has been devoted to elucidating the phylogenetic relationships among members of the D. buzzatii cluster, including molecular phylogenetic studies that have generated ambiguous results where different tree topologies have resulted dependent on the kinds of molecular marker used. Even though mitochondrial DNA regions have become useful markers in evolutionary biology and population genetics, none of the more than twenty Drosophila mitogenomes assembled so far includes this cluster. Here, we report the assembly of six complete mitogenomes of five species: D. antonietae, D. borborema, D. buzzatii, two strains of D. koepferae and D. seriema, with the aim of revisiting phylogenetic relationships and divergence times by means of mitogenomic analyses. Our recovered topology using complete mitogenomes supports the hypothesis of monophyly of the D. buzzatii cluster and shows two main clades, one including D. buzzatii and D. koepferae (both strains), and the other containing the remaining species. These results are in agreement with previous reports based on a few mitochondrial and/or nuclear genes, but conflict with the results of a recent large-scale nuclear phylogeny, indicating that nuclear and mitochondrial genomes depict different evolutionary histories.
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Vrdoljak J, Padró J, De Panis D, Soto IM, Carreira VP. Protein–alkaloid interaction in larval diet affects fitness in cactophilic Drosophila (Diptera: Drosophilidae). Biol J Linn Soc Lond 2019. [DOI: 10.1093/biolinnean/blz028] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Affiliation(s)
- Juan Vrdoljak
- Instituto de Ecología, Genética y Evolución de Buenos Aires (IEGEBA – CONICET), DEGE, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Intendente Guiraldes, Buenos Aires, Argentina
| | - Julián Padró
- Instituto de Ecología, Genética y Evolución de Buenos Aires (IEGEBA – CONICET), DEGE, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Intendente Guiraldes, Buenos Aires, Argentina
| | - Diego De Panis
- Instituto de Ecología, Genética y Evolución de Buenos Aires (IEGEBA – CONICET), DEGE, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Intendente Guiraldes, Buenos Aires, Argentina
| | - Ignacio M Soto
- Instituto de Ecología, Genética y Evolución de Buenos Aires (IEGEBA – CONICET), DEGE, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Intendente Guiraldes, Buenos Aires, Argentina
| | - Valeria P Carreira
- Instituto de Ecología, Genética y Evolución de Buenos Aires (IEGEBA – CONICET), DEGE, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Intendente Guiraldes, Buenos Aires, Argentina
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17
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Hou Z, Wei C. De novo comparative transcriptome analysis of a rare cicada, with identification of candidate genes related to adaptation to a novel host plant and drier habitats. BMC Genomics 2019; 20:182. [PMID: 30845906 PMCID: PMC6407286 DOI: 10.1186/s12864-019-5547-y] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2018] [Accepted: 02/20/2019] [Indexed: 01/18/2023] Open
Abstract
Background Although the importance of host plant chemistry in plant–insect interactions is widely recognized, our understanding about the genetic basis underlying the relationship between changes in midgut proteins and adaptation of plant-feeding insects to novel host plants and habitats is very limited. To address this knowledge gap, the transcriptional profiles of midguts among three populations of the cicada Subpsaltria yangi Chen were compared. Among which, the Hancheng (HC) and Fengxiang (FX) populations occurring in the Loess Plateau feed on Ziziphus jujuba Mill. var. spinosa (Bunge) Hu ex H. F. Chow, while the population occurring in a much drier habitat in the Helan (HL) Mountains is locally specialized on a chemically divergent plant, Ephedra lepidosperma C. Y. Cheng. Results Based on comparative analysis, 1826 (HL vs HC) differentially expressed genes (DEGs) and 723 DEGs (HL vs FX) were identified between the populations utilizing different host plants, including 20, 36, 2, 5 and 2 genes related to digestion, detoxification, oxidation-reduction, stress response and water-deprivation response, respectively, and 35 genes presumably associated with osmoregulation. However, only 183 DEGs were identified between the HC and FX populations, including two genes related to detoxification, two genes related to stress response, and one gene presumably associated with osmoregulation. These results suggest that the weakest expression differences were between the populations utilizing the same host plant and occurring in the closest habitats, which may help explain the metabolic mechanism of adaptation in S. yangi populations to novel host plants and new niches. Conclusions The observed differences in gene expression among S. yangi populations are consistent with the hypothesis that the host plant shift and habitat adaptation in the HL population was facilitated by differential regulation of genes related to digestion, detoxification, oxidation-reduction, stress response, water-deprivation response and osmoregulation. The results may inform future studies on the molecular mechanisms underlying the relationship between changes in midgut proteins and adaptation of herbivorous insects to novel host plants and new niches. Electronic supplementary material The online version of this article (10.1186/s12864-019-5547-y) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Zehai Hou
- State Key Laboratory of Crop Stress Biology for Arid Areas, and Key Laboratory of Plant Protection Resources and Pest Management, Ministry of Education, College of Plant Protection, Northwest A&F University, Yangling, 712100, Shaanxi, China
| | - Cong Wei
- State Key Laboratory of Crop Stress Biology for Arid Areas, and Key Laboratory of Plant Protection Resources and Pest Management, Ministry of Education, College of Plant Protection, Northwest A&F University, Yangling, 712100, Shaanxi, China.
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18
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Comparative sialotranscriptome analysis of the rare Chinese cicada Subpsaltria yangi, with identification of candidate genes related to host-plant adaptation. Int J Biol Macromol 2019; 130:323-332. [PMID: 30807802 DOI: 10.1016/j.ijbiomac.2019.02.132] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2018] [Revised: 02/22/2019] [Accepted: 02/22/2019] [Indexed: 01/01/2023]
Abstract
Little is known about the mechanisms underlying the relationship between changes in salivary proteins and the adaptation of insects to different host-plants. To address this knowledge gap, the transcriptional profiles of salivary glands were compared among three populations of the rare cicada Subpsaltria yangi, in which two populations specialize on Zizyphus jujuba var. spinosa, but the population occurring in the Helan (HL) Mountains is locally specialized on the endemic plant Ephedra lepidosperma. The comparisons indicate that genes related to digestion and detoxification are differentially regulated in populations feeding on different plants, possibly reflecting adaptative changes in salivary proteins of S. yangi in response to different host chemistries. In detail, 38 differentially expressed genes and 21 up-regulated genes related to digestion and detoxification were identified respectively in two pairwise comparisons among the populations using different hosts, with some genes exclusively expressed in the HL population. Our results are consistent with the hypothesis that the host plant shift in the HL population was facilitated by differential regulation of genes related to digestion and detoxification. This study provides new information for elucidating the molecular mechanisms underlying the relationship between changed salivary proteins and the adaptability of plant-feeding insects to novel host plants.
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19
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Padró J, Vrdoljak J, Milla Carmona P, Soto IM. Divergent patterns of correlated evolution in primary and secondary sexual traits of cactophilic Drosophila. Evol Ecol 2018. [DOI: 10.1007/s10682-018-9964-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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20
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Soto EM, Padró J, Milla Carmona P, Tuero DT, Carreira VP, Soto IM. Pupal emergence pattern in cactophilic Drosophila and the effect of host plants. INSECT SCIENCE 2018; 25:1108-1118. [PMID: 28544122 DOI: 10.1111/1744-7917.12484] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/04/2016] [Revised: 03/31/2017] [Accepted: 04/16/2017] [Indexed: 06/07/2023]
Abstract
Drosophila buzzatii and D. koepferae are sibling cactophilic species. The former breeds primarily on prickly pears (genus Opuntia) whereas the latter breeds on columnar cacti of the genera Cereus and Trichocereus, although with certain degree of niche overlapping. We examined the interspecific differences in diurnal temporal patterns of adult emergence from puparia and evaluated whether this behavior is affected by rearing in the different cactus hosts available in nature. We detected important host-dependent genetic variation for this trait differentially affecting the emergence schedule of these species. Diurnal pattern of emergence time was directly correlated with developmental time and negatively correlated with adult wing size, suggesting that early emergences are at least indirectly correlated with increased fitness. We discussed our results in terms of their putative effects on fitness and the genetic-metabolic pathways that would be presumably affected by host's nutritional-chemical differences.
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Affiliation(s)
- Eduardo M Soto
- Departamento de Ecología Genética y Evolución, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, IEGEBA-CONICET, Buenos Aires, Argentina
| | - Julián Padró
- Departamento de Ecología Genética y Evolución, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, IEGEBA-CONICET, Buenos Aires, Argentina
| | - Pablo Milla Carmona
- Departamento de Ecología Genética y Evolución, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, IEGEBA-CONICET, Buenos Aires, Argentina
| | - Diego T Tuero
- Departamento de Ecología Genética y Evolución, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, IEGEBA-CONICET, Buenos Aires, Argentina
| | - Valeria P Carreira
- Departamento de Ecología Genética y Evolución, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, IEGEBA-CONICET, Buenos Aires, Argentina
| | - Ignacio M Soto
- Departamento de Ecología Genética y Evolución, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, IEGEBA-CONICET, Buenos Aires, Argentina
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Hasson E, De Panis D, Hurtado J, Mensch J. Host Plant Adaptation in Cactophilic Species of theDrosophila buzzatiiCluster: Fitness and Transcriptomics. J Hered 2018; 110:46-57. [DOI: 10.1093/jhered/esy043] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2018] [Accepted: 08/07/2018] [Indexed: 01/21/2023] Open
Affiliation(s)
- Esteban Hasson
- IEGEBA (CONICET/UBA), Departamento de Ecología, Genética y Evolución, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria Pab 2, Buenos Aires, Argentina
| | - Diego De Panis
- IEGEBA (CONICET/UBA), Departamento de Ecología, Genética y Evolución, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria Pab 2, Buenos Aires, Argentina
| | - Juan Hurtado
- IEGEBA (CONICET/UBA), Departamento de Ecología, Genética y Evolución, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria Pab 2, Buenos Aires, Argentina
| | - Julián Mensch
- IEGEBA (CONICET/UBA), Departamento de Ecología, Genética y Evolución, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria Pab 2, Buenos Aires, Argentina
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22
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Iglesias PP, Soto EM, Soto IM, Colines B, Hasson E. The influence of developmental environment on courtship song in cactophilicDrosophila. J Evol Biol 2018; 31:957-967. [DOI: 10.1111/jeb.13277] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2017] [Revised: 02/28/2018] [Accepted: 04/04/2018] [Indexed: 01/14/2023]
Affiliation(s)
- Patricia P. Iglesias
- Departamento de Ecología, Genética y Evolución; Facultad de Ciencias Exactas y Naturales; Universidad de Buenos Aires; Buenos Aires Argentina
- Instituto de Ecología, Genética y Evolución de Buenos Aires (IEGEBA); CONICET; Universidad de Buenos Aires; Buenos Aires Argentina
| | - Eduardo M. Soto
- Departamento de Ecología, Genética y Evolución; Facultad de Ciencias Exactas y Naturales; Universidad de Buenos Aires; Buenos Aires Argentina
- Instituto de Ecología, Genética y Evolución de Buenos Aires (IEGEBA); CONICET; Universidad de Buenos Aires; Buenos Aires Argentina
| | - Ignacio M. Soto
- Departamento de Ecología, Genética y Evolución; Facultad de Ciencias Exactas y Naturales; Universidad de Buenos Aires; Buenos Aires Argentina
- Instituto de Ecología, Genética y Evolución de Buenos Aires (IEGEBA); CONICET; Universidad de Buenos Aires; Buenos Aires Argentina
| | - Betina Colines
- Departamento de Ecología, Genética y Evolución; Facultad de Ciencias Exactas y Naturales; Universidad de Buenos Aires; Buenos Aires Argentina
- Instituto de Ecología, Genética y Evolución de Buenos Aires (IEGEBA); CONICET; Universidad de Buenos Aires; Buenos Aires Argentina
| | - Esteban Hasson
- Departamento de Ecología, Genética y Evolución; Facultad de Ciencias Exactas y Naturales; Universidad de Buenos Aires; Buenos Aires Argentina
- Instituto de Ecología, Genética y Evolución de Buenos Aires (IEGEBA); CONICET; Universidad de Buenos Aires; Buenos Aires Argentina
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Dermauw W, Pym A, Bass C, Van Leeuwen T, Feyereisen R. Does host plant adaptation lead to pesticide resistance in generalist herbivores? CURRENT OPINION IN INSECT SCIENCE 2018; 26:25-33. [PMID: 29764657 DOI: 10.1016/j.cois.2018.01.001] [Citation(s) in RCA: 46] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2017] [Revised: 01/05/2018] [Accepted: 01/06/2018] [Indexed: 05/09/2023]
Abstract
Most herbivorous arthropods feed on one or a few closely related plant species; however, certain insect and mite species have a greatly expanded host range. Several of these generalists also show a remarkable propensity to evolve resistance to chemical pesticides. In this review, we ask if the evolution of mechanisms to tolerate the diversity of plant secondary metabolites that generalist herbivores encounter, has pre-adapted them to resist synthetic pesticides. Critical examination of the evidence suggests that a generalist life-style per se is not a predictor of rapid resistance evolution to pesticides. Rather the prevalence of pesticide resistance in generalist herbivores probably reflects their economic importance as pests and thus the strong selection imposed by intensive pesticide use.
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Affiliation(s)
- Wannes Dermauw
- Department or Crop Protection, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium.
| | - Adam Pym
- College of Life and Environmental Sciences, Biosciences, University of Exeter, Penryn Campus, Penryn, Cornwall TR10 9FE, UK
| | - Chris Bass
- College of Life and Environmental Sciences, Biosciences, University of Exeter, Penryn Campus, Penryn, Cornwall TR10 9FE, UK
| | - Thomas Van Leeuwen
- Department or Crop Protection, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium; Department of Evolutionary Biology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, P.O. Box 94240, 1090 GE Amsterdam, The Netherlands
| | - René Feyereisen
- Department or Crop Protection, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium; Department of Plant and Environmental Sciences, University of Copenhagen, Copenhagen, Denmark.
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24
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Combined transcriptomic/proteomic analysis of salivary gland and secreted saliva in three planthopper species. J Proteomics 2018; 172:25-35. [DOI: 10.1016/j.jprot.2017.11.003] [Citation(s) in RCA: 46] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2017] [Revised: 09/30/2017] [Accepted: 11/01/2017] [Indexed: 01/17/2023]
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25
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Stefanini MI, Milla Carmona P, Iglesias PP, Soto EM, Soto IM. Differential Rates of Male Genital Evolution in Sibling Species of Drosophila. Evol Biol 2018. [DOI: 10.1007/s11692-018-9444-0] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Experimental hybridization in allopatric species of the Drosophila repleta group (Diptera: Drosophilidae): implications for the mode of speciation. Biol J Linn Soc Lond 2017. [DOI: 10.1093/biolinnean/blx143] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
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Padró J, De Panis DN, Vrdoljak J, Carmona PM, Colines B, Hasson E, Soto IM. Experimental Evolution of Alkaloid Tolerance in Sibling Drosophila Species with Different Degrees of Specialization. Evol Biol 2017. [DOI: 10.1007/s11692-017-9441-8] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
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28
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Birnbaum SSL, Rinker DC, Gerardo NM, Abbot P. Transcriptional profile and differential fitness in a specialist milkweed insect across host plants varying in toxicity. Mol Ecol 2017; 26:6742-6761. [PMID: 29110382 DOI: 10.1111/mec.14401] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2017] [Accepted: 10/18/2017] [Indexed: 01/03/2023]
Abstract
Interactions between plants and herbivorous insects have been models for theories of specialization and co-evolution for over a century. Phytochemicals govern many aspects of these interactions and have fostered the evolution of adaptations by insects to tolerate or even specialize on plant defensive chemistry. While genomic approaches are providing new insights into the genes and mechanisms insect specialists employ to tolerate plant secondary metabolites, open questions remain about the evolution and conservation of insect counterdefences, how insects respond to the diversity defences mounted by their host plants, and the costs and benefits of resistance and tolerance to plant defences in natural ecological communities. Using a milkweed-specialist aphid (Aphis nerii) model, we test the effects of host plant species with increased toxicity, likely driven primarily by increased secondary metabolites, on aphid life history traits and whole-body gene expression. We show that more toxic plant species have a negative effect on aphid development and lifetime fecundity. When feeding on more toxic host plants with higher levels of secondary metabolites, aphids regulate a narrow, targeted set of genes, including those involved in canonical detoxification processes (e.g., cytochrome P450s, hydrolases, UDP-glucuronosyltransferases and ABC transporters). These results indicate that A. nerii marshal a variety of metabolic detoxification mechanisms to circumvent milkweed toxicity and facilitate host plant specialization, yet, despite these detoxification mechanisms, aphids experience reduced fitness when feeding on more toxic host plants. Disentangling how specialist insects respond to challenging host plants is a pivotal step in understanding the evolution of specialized diet breadths.
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Affiliation(s)
| | - David C Rinker
- Department of Biological Sciences, Vanderbilt University, Nashville, TN, USA
| | - Nicole M Gerardo
- Department of Biology, O. Wayne Rollins Research Center, Emory University, Atlanta, GA, USA
| | - Patrick Abbot
- Department of Biological Sciences, Vanderbilt University, Nashville, TN, USA
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Müller C, Vogel H, Heckel DG. Transcriptional responses to short-term and long-term host plant experience and parasite load in an oligophagous beetle. Mol Ecol 2017; 26:6370-6383. [DOI: 10.1111/mec.14349] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2017] [Revised: 07/31/2017] [Accepted: 09/05/2017] [Indexed: 01/03/2023]
Affiliation(s)
- Caroline Müller
- Department of Chemical Ecology; Bielefeld University; Bielefeld Germany
| | - Heiko Vogel
- Department of Entomology; Max Planck Institute for Chemical Ecology; Jena Germany
| | - David G. Heckel
- Department of Entomology; Max Planck Institute for Chemical Ecology; Jena Germany
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Nazario-Yepiz NO, Loustalot-Laclette MR, Carpinteyro-Ponce J, Abreu-Goodger C, Markow TA. Transcriptional responses of ecologically diverse Drosophila species to larval diets differing in relative sugar and protein ratios. PLoS One 2017; 12:e0183007. [PMID: 28832647 PMCID: PMC5568408 DOI: 10.1371/journal.pone.0183007] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2017] [Accepted: 07/27/2017] [Indexed: 11/22/2022] Open
Abstract
We utilized three ecologically diverse Drosophila species to explore the influence of ecological adaptation on transcriptomic responses to isocaloric diets differing in their relative proportions of protein to sugar. Drosophila melanogaster, a cosmopolitan species that breeds in decaying fruit, exemplifies individuals long exposed to a Western diet higher in sugar, while the natural diet of the cactophilic D. mojavensis, is much lower in carbohydrates. Drosophila arizonae, the sister species of D. mojavensis, is largely cactophilic, but also utilizes rotting fruits that are higher in sugars than cacti. We exposed third instar larvae for 24 hours to diets either (1) high in protein relative to sugar, (2) diets with equal amounts of protein and sugar, and (3) diets low in protein but high in sugar. As we predicted, based upon earlier interspecific studies of development and metabolism, the most extreme differences in gene expression under different dietary conditions were found in D. mojavensis followed by D. arizonae. No differential expression among diets was observed for D. melanogaster, a species that survives well under all three conditions, with little impact on its metabolism. We suggest that these three species together provide a model to examine individual and population differences in vulnerability to lifestyle-associated health problems such as metabolic syndrome and diabetes.
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Affiliation(s)
| | | | - Javier Carpinteyro-Ponce
- Laboratorio Nacional de la Genomica de Biodiversidad, Irapuato, Guanajuato, Mexico
- Department of Biology, University of Maryland, College Park, Maryland, United States of America
| | - Cei Abreu-Goodger
- Laboratorio Nacional de la Genomica de Biodiversidad, Irapuato, Guanajuato, Mexico
| | - Therese Ann Markow
- Laboratorio Nacional de la Genomica de Biodiversidad, Irapuato, Guanajuato, Mexico
- Department of Cell and Molecular Biology, University of California San Diego, La Jolla, California, United States of America
- * E-mail:
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