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Mbe JO, Dzidzienyo D, Abah SP, Njoku DN, Aghogho CI, Onyeka J, Tongoona P, Egesi C. Genotype by environment interaction effect and fresh root yield stability of cassava genotypes under contrasting nitrogen regimes. Sci Rep 2024; 14:20709. [PMID: 39237563 PMCID: PMC11377699 DOI: 10.1038/s41598-024-71157-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2024] [Accepted: 08/26/2024] [Indexed: 09/07/2024] Open
Abstract
Nitrogen (N) is an important nutrient element needed by cassava for optimum yield and it is a vital component of nucleotides (nucleic acids), enzymes, amino acids (proteins), chlorophyll molecules and hormones, among other essential compounds required for growth and development of cassava. Nitrogen stress is a major cassava production constraint, the study aimed to examine genotype by environment interaction (GEI) effects and fresh root yield stability of 203 diverse cassava clones to identify genotypes with stable performance under low and optimum nitrogen regimes across environments using AMMI and GGE biplot analysis. Experiments were conducted using an augmented block design with three replications for two years in three locations in Nigeria. There were significant differences (p < 0.001) in the genotype's mean performances as well as significant differences (p < 0.001) in the environment's mean performances for all the traits measured in both nitrogen regimes. The AMMI analysis of variance showed significant effects (p < 0.001) for genotypes, environments and the interactions for fresh root yield in both nitrogen regimes. The biplot analysis showed that for fresh root yield in the optimum nitrogen regime, the principal component accounted for 81.54% of the G + GE (Genotype plus and Genotype by Environment) variation. The G + GE for fresh root yield in the low nitrogen regime accounted for a total of 71.64% of the variation. Ten genotypes were identified as the best genotypes under the optimum nitrogen regime, while eleven genotypes were the best under the low nitrogen regime. Three genotypes under optimum nitrogen regimes were high-yielding. Still, they were unstable in their fresh root yield performance across the environments and can be recommended as specifically adapted to the environments they performed best. Three other genotypes were high-yielding genotypes under low nitrogen but were highly unstable in their fresh root yield mean performance across the environments. The environments Otobi_YR1, Igbariam_YR2, and Umudike_YR1 were identified as the most discriminatory among the test environments. The environments Umudike_YR2 and Igbariam_YR1 were identified as the most representative of the test environments and can represent a mega-environment. The best 21 genotypes that performed above the grand mean for fresh root yield in both nitrogen regimes can be further evaluated on the farmer's field for possible advancement.
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Affiliation(s)
- Joseph Okpani Mbe
- National Root Crops Research Institute, (NRCRI), Umudike, Nigeria
- West Africa Centre for Crop Improvement (WACCI), University of Ghana, Accra, Ghana
| | - Daniel Dzidzienyo
- West Africa Centre for Crop Improvement (WACCI), University of Ghana, Accra, Ghana
- Btechnology Centre, University of Ghana, Accra, Ghana
| | - Simon Peter Abah
- National Root Crops Research Institute, (NRCRI), Umudike, Nigeria
- West Africa Centre for Crop Improvement (WACCI), University of Ghana, Accra, Ghana
| | | | - Cynhia Idhigu Aghogho
- West Africa Centre for Crop Improvement (WACCI), University of Ghana, Accra, Ghana
- International Institute of Tropical Agriculture (IITA), Ibadan, Nigeria
| | - Joseph Onyeka
- National Root Crops Research Institute, (NRCRI), Umudike, Nigeria
- International Institute of Tropical Agriculture (IITA), Ibadan, Nigeria
| | - Pangirayi Tongoona
- West Africa Centre for Crop Improvement (WACCI), University of Ghana, Accra, Ghana
| | - Chiedozie Egesi
- National Root Crops Research Institute, (NRCRI), Umudike, Nigeria.
- Department of Plant Breeding and Genetics, Cornell University, Ithaca, NY, USA.
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Santanoo S, Ittipong P, Banterng P, Vorasoot N, Jogloy S, Vongcharoen K, Theerakulpisut P. Photosynthetic Performance, Carbohydrate Partitioning, Growth, and Yield among Cassava Genotypes under Full Irrigation and Early Drought Treatment in a Tropical Savanna Climate. PLANTS (BASEL, SWITZERLAND) 2024; 13:2049. [PMID: 39124167 PMCID: PMC11313790 DOI: 10.3390/plants13152049] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/06/2024] [Revised: 07/22/2024] [Accepted: 07/23/2024] [Indexed: 08/12/2024]
Abstract
In a tropical savanna climate like Thailand, cassava can be planted all year round and harvested at 8 to 12 months after planting (MAP). However, it is not clear how water limitation during the dry season without rain affects carbon assimilation, partitioning, and yield. In this field investigation, six cassava genotypes were planted in the rainy season (August 2021) under continuous irrigation (control) or subjected to drought for 60 days from 3MAP to 5MAP during the dry season (November 2021 to January 2022) with no irrigation and rainfall. After that, the plants were rewatered and continued growing until harvest at 12MAP. After 60 days of stress, there were significant reductions in the mean net photosynthesis rate (Pn), petiole, and root dry weight (DW), and slight reductions in leaf, stem, and tuber DW. The mean starch concentrations were reduced by 42% and 16% in leaves and tubers, respectively, but increased by 12% in stems. At 6MAP after 30 days of rewatering, Pn fully recovered, and stem starch was remobilized resulting in a dramatic increase in the DW of all the organs. Although the mean tuber DW of the drought plants at 6MAP was significantly lower than that of the control, it was significantly higher at 12MAP. Moreover, the mean tuber starch concentration at 12MAP of the drought plants (18.81%) was also significantly higher than that of the controls (16.46%). In the drought treatment, the high-yielding varieties, RY9, RY72, KU50, and CMR38-125-77 were similarly productive in terms of tuber DW and starch concentration while the breeding line CM523-7 produced the lowest tuber biomass and significantly lower starch content. Therefore, for cassava planted in the rainy season in the tropical savanna climate, the exposure to drought during the early growth stage was more beneficial than the continuous irrigation.
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Affiliation(s)
- Supranee Santanoo
- Department of Biology, Faculty of Science, Khon Kaen University, Khon Kaen 40002, Thailand;
| | - Passamon Ittipong
- Department of Agronomy, Faculty of Agriculture, Khon Kaen University, Khon Kaen 40002, Thailand; (P.I.); (P.B.); (N.V.); (S.J.)
| | - Poramate Banterng
- Department of Agronomy, Faculty of Agriculture, Khon Kaen University, Khon Kaen 40002, Thailand; (P.I.); (P.B.); (N.V.); (S.J.)
| | - Nimitr Vorasoot
- Department of Agronomy, Faculty of Agriculture, Khon Kaen University, Khon Kaen 40002, Thailand; (P.I.); (P.B.); (N.V.); (S.J.)
| | - Sanun Jogloy
- Department of Agronomy, Faculty of Agriculture, Khon Kaen University, Khon Kaen 40002, Thailand; (P.I.); (P.B.); (N.V.); (S.J.)
| | - Kochaphan Vongcharoen
- Faculty of Science and Health Technology, Kalasin University, Kalasin 46000, Thailand;
| | - Piyada Theerakulpisut
- Department of Biology, Faculty of Science, Khon Kaen University, Khon Kaen 40002, Thailand;
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3
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Yan Y, Wang P, He J, Shi H. KIN10-mediated HB16 protein phosphorylation and self-association improve cassava disease resistance by transcriptional activation of lignin biosynthesis genes. PLANT BIOTECHNOLOGY JOURNAL 2024. [PMID: 38768314 DOI: 10.1111/pbi.14386] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2024] [Revised: 03/07/2024] [Accepted: 05/07/2024] [Indexed: 05/22/2024]
Abstract
Cassava bacterial blight significantly affects cassava yield worldwide, while major cassava cultivars are susceptible to this disease. Therefore, it is crucial to identify cassava disease resistance gene networks and defence molecules for the genetic improvement of cassava cultivars. In this study, we found that MeHB16 transcription factor as a differentially expressed gene in cassava cultivars with contrasting disease resistance, positively modulated disease resistance by modulating defence molecule lignin accumulation. Further investigation showed that MeHB16 physically interacted with itself via the leucine-Zippe domain (L-Zip), which was necessary for the transcriptional activation of downstream lignin biosynthesis genes. In addition, protein kinase MeKIN10 directly interacted with MeHB16 to promote its phosphorylation at Ser6, which in turn enhanced MeHB16 self-association and downstream lignin biosynthesis. In summary, this study revealed the molecular network of MeKIN10-mediated MeHB16 protein phosphorylation improved cassava bacterial blight resistance by fine-tuning lignin biosynthesis and provides candidate genes and the defence molecule for improving cassava disease resistance.
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Affiliation(s)
- Yu Yan
- National Key Laboratory for Tropical Crop Breeding, School of Breeding and Multiplication (Sanya Institute of Breeding and Multiplication), Key Laboratory of Biotechnology of Salt Tolerant Crops of Hainan Province, School of Tropical Agriculture and Forestry, Hainan University, Hainan province, China
| | - Peng Wang
- National Key Laboratory for Tropical Crop Breeding, School of Breeding and Multiplication (Sanya Institute of Breeding and Multiplication), Key Laboratory of Biotechnology of Salt Tolerant Crops of Hainan Province, School of Tropical Agriculture and Forestry, Hainan University, Hainan province, China
| | - Jiaoyan He
- National Key Laboratory for Tropical Crop Breeding, School of Breeding and Multiplication (Sanya Institute of Breeding and Multiplication), Key Laboratory of Biotechnology of Salt Tolerant Crops of Hainan Province, School of Tropical Agriculture and Forestry, Hainan University, Hainan province, China
| | - Haitao Shi
- National Key Laboratory for Tropical Crop Breeding, School of Breeding and Multiplication (Sanya Institute of Breeding and Multiplication), Key Laboratory of Biotechnology of Salt Tolerant Crops of Hainan Province, School of Tropical Agriculture and Forestry, Hainan University, Hainan province, China
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Mbe JO, Dzidzienyo DK, Abah SP, Njoku DN, Onyeka J, Tongoona P, Egesi C. Novel SNP markers and other stress-related genomic regions associated with nitrogen use efficiency in cassava. FRONTIERS IN PLANT SCIENCE 2024; 15:1376520. [PMID: 38638347 PMCID: PMC11024350 DOI: 10.3389/fpls.2024.1376520] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/25/2024] [Accepted: 03/15/2024] [Indexed: 04/20/2024]
Abstract
Cassava productivity is constrained by low soil nitrogen, which is predominant in most cassava-growing regions in the tropics and subtropical agroecology. Improving the low nitrogen tolerance of cassava has become an important breeding objective. The current study aimed to develop cassava varieties with improved nitrogen use efficiency by identifying genomic regions and candidate genes linked to nitrogen use efficiency in cassava. A genome-wide association study (GWAS) was performed using the Genome Association and Prediction Integrated Tool (GAPIT). A panel of 265 diverse cassava genotypes was phenotyped for 10 physiological and agronomic traits under optimum and low-nitrogen regimes. Whole-genome genotyping of these cassava cloneswas performed using the Diversity Arrays Technology (DArTseq) sequencing platform. A total of 68,814 single nucleotide polymorphisms (SNPs) were identified, which were spread across the entire 18 chromosomes of the cassava genome, of which 52 SNPs at various densities were found to be associated with nitrogen use efficiency in cassava and other yield-related traits. The putative genes identified through GWAS, especially those with significant associated SNP markers for NUE and related traits have the potential, if deployed appropriately, to develop cassava varieties with improved nitrogen use efficiency, which would translate to a reduction in the economic and environmental cost of cassava production.
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Affiliation(s)
- Joseph Okpani Mbe
- Cassava Research Program, National Root Crops Research Institute (NRCRI), Umudike, Nigeria
- West Africa Centre for Crop Improvement (WACCI), University of Ghana, Accra, Ghana
| | - Daniel Kwadjo Dzidzienyo
- West Africa Centre for Crop Improvement (WACCI), University of Ghana, Accra, Ghana
- Biotechnology Centre, College of Basic and Applied Sciences, University of Ghana, Accra, Ghana
| | - Simon Peter Abah
- Cassava Research Program, National Root Crops Research Institute (NRCRI), Umudike, Nigeria
- West Africa Centre for Crop Improvement (WACCI), University of Ghana, Accra, Ghana
| | - Damian Ndubuisi Njoku
- Cassava Research Program, National Root Crops Research Institute (NRCRI), Umudike, Nigeria
| | - Joseph Onyeka
- Cassava Research Program, National Root Crops Research Institute (NRCRI), Umudike, Nigeria
| | - Pangirayi Tongoona
- West Africa Centre for Crop Improvement (WACCI), University of Ghana, Accra, Ghana
| | - Chiedozie Egesi
- Cassava Research Program, National Root Crops Research Institute (NRCRI), Umudike, Nigeria
- Department of Plant Breeding and Genetics, Cornell University, Ithaca, NY, United States
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5
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Zang Y, Pei Y, Cong X, Ran F, Liu L, Wang C, Wang D, Min Y. Single-cell RNA-sequencing profiles reveal the developmental landscape of the Manihot esculenta Crantz leaves. PLANT PHYSIOLOGY 2023; 194:456-474. [PMID: 37706525 PMCID: PMC10756766 DOI: 10.1093/plphys/kiad500] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2023] [Revised: 06/26/2023] [Accepted: 07/05/2023] [Indexed: 09/15/2023]
Abstract
Cassava (Manihot esculenta Crantz) is an important crop with a high photosynthetic rate and high yield. It is classified as a C3-C4 plant based on its photosynthetic and structural characteristics. To investigate the structural and photosynthetic characteristics of cassava leaves at the cellular level, we created a single-cell transcriptome atlas of cassava leaves. A total of 11,177 high-quality leaf cells were divided into 15 cell clusters. Based on leaf cell marker genes, we identified 3 major tissues of cassava leaves, which were mesophyll, epidermis, and vascular tissue, and analyzed their distinctive properties and metabolic activity. To supplement the genes for identifying the types of leaf cells, we screened 120 candidate marker genes. We constructed a leaf cell development trajectory map and discovered 6 genes related to cell differentiation fate. The structural and photosynthetic properties of cassava leaves analyzed at the single cellular level provide a theoretical foundation for further enhancing cassava yield and nutrition.
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Affiliation(s)
- Yuwei Zang
- Department of Biotechnology, School of Life Sciences, Hainan University, Haikou, Hainan 570228, China
| | - Yechun Pei
- Department of Biotechnology, School of Life Sciences, Hainan University, Haikou, Hainan 570228, China
- Laboratory of Biopharmaceuticals and Molecular Pharmacology, School of Pharmaceutical Sciences, Hainan University, Haikou, Hainan 570228, China
| | - Xinli Cong
- Department of Biotechnology, School of Life Sciences, Hainan University, Haikou, Hainan 570228, China
- Laboratory of Biopharmaceuticals and Molecular Pharmacology, School of Pharmaceutical Sciences, Hainan University, Haikou, Hainan 570228, China
| | - Fangfang Ran
- Department of Biotechnology, School of Life Sciences, Hainan University, Haikou, Hainan 570228, China
| | - Liangwang Liu
- Department of Biotechnology, School of Life Sciences, Hainan University, Haikou, Hainan 570228, China
| | - Changyi Wang
- Department of Biotechnology, School of Life Sciences, Hainan University, Haikou, Hainan 570228, China
| | - Dayong Wang
- Laboratory of Biopharmaceuticals and Molecular Pharmacology, School of Pharmaceutical Sciences, Hainan University, Haikou, Hainan 570228, China
| | - Yi Min
- Department of Biotechnology, School of Life Sciences, Hainan University, Haikou, Hainan 570228, China
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Roychowdhury R, Ballén-Taborda C, Chaturvedi P. Editorial: Characterizing and improving traits for resilient crop development. FRONTIERS IN PLANT SCIENCE 2023; 14:1307327. [PMID: 37941664 PMCID: PMC10628715 DOI: 10.3389/fpls.2023.1307327] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/04/2023] [Accepted: 10/12/2023] [Indexed: 11/10/2023]
Affiliation(s)
- Rajib Roychowdhury
- Department of Plant Pathology and Weed Research, Institute of Plant Protection, Agricultural Research Organization (ARO) – Volcani Center, Rishon Lezion, Israel
| | - Carolina Ballén-Taborda
- Pee Dee Research and Education Center, Department of Plant and Environmental Sciences, Clemson University, Florence, SC, United States
| | - Palak Chaturvedi
- Molecular Systems Biology Lab (MOSYS), Department of Functional and Evolutionary Ecology, Faculty of Life Sciences, University of Vienna, Vienna, Austria
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7
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Ma Q, Feng Y, Luo S, Cheng L, Tong W, Lu X, Li Y, Zhang P. The aquaporin MePIP2;7 improves MeMGT9-mediated Mg 2 + acquisition in cassava. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2023; 65:2349-2367. [PMID: 37548108 DOI: 10.1111/jipb.13552] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2023] [Accepted: 08/03/2023] [Indexed: 08/08/2023]
Abstract
Aquaporins are important transmembrane water transport proteins which transport water and several neutral molecules. However, how aquaporins are involved in the synergistic transport of Mg2+ and water remains poorly understood. Here, we found that the cassava aquaporin MePIP2;7 was involved in Mg2+ transport through interaction with MeMGT9, a lower affinity magnesium transporter protein. Knockdown of MePIP2;7 in cassava led to magnesium deficiency in basal mature leaves with chlorosis and necrotic spots on their edges and starch over-accumulation. Mg2+ content was significantly decreased in leaves and roots of MePIP2;7-RNA interference (PIP-Ri) plants grown in both field and Mg2+ -free hydroponic solution. Xenopus oocyte injection analysis verified that MePIP2;7 possessed the ability to transport water only and MeMGT9 was responsible for Mg2+ efflux. More importantly, MePIP2;7 improved the transportability of Mg2+ via MeMGT9 as verified using the CM66 mutant complementation assay and Xenopus oocytes expressing system. Yeast two-hybrid, bimolecular fluorescence complementation, co-localization, and co-immunoprecipitation assays demonstrated the direct protein-protein interaction between MePIP2;7 and MeMGT9 in vivo. Mg2+ flux was significantly elevated in MePIP2;7-overexpressing lines in hydroponic solution through non-invasive micro-test technique analysis. Under Mg2+ -free condition, the retarded growth of PIP-Ri transgenic plants could be recovered with Mg2+ supplementation. Taken together, our results demonstrated the synergistic effect of the MePIP2;7 and MeMGT9 interaction in regulating water and Mg2+ absorption and transport in cassava.
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Affiliation(s)
- Qiuxiang Ma
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, 200032, China
| | - Yancai Feng
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, 200032, China
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Shu Luo
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, 200032, China
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Lu Cheng
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, 200032, China
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Weijing Tong
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, 200032, China
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Xinlu Lu
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, 200032, China
| | - Youzhi Li
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources/College of Life Science and Technology, Guangxi University, Nanning, 530004, China
| | - Peng Zhang
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, 200032, China
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China
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8
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Feng Y, Zhang Y, Shah OU, Luo K, Chen Y. Isolation and Identification of Endophytic Bacteria Bacillus sp. ME9 That Exhibits Biocontrol Activity against Xanthomonas phaseoli pv. manihotis. BIOLOGY 2023; 12:1231. [PMID: 37759630 PMCID: PMC10525512 DOI: 10.3390/biology12091231] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2023] [Revised: 09/01/2023] [Accepted: 09/07/2023] [Indexed: 09/29/2023]
Abstract
In recent years, the bacterial blight of cassava has caused substantial economic losses to the Chinese cassava industry. Chemical control methods have become the primary approach to control this disease; however, their widespread usage and harmful residues have raised concerns about environmental pollution. In order to avoid this, it is urgent to seek a green ecological method to prevent and control it. Biological control through the utilization of microorganisms not only effectively inhibits the disease, but also gives consideration to environmental friendliness. Therefore, investigating an endophytic biological control method for cassava bacterial blight is of great importance. In this study, cassava leaf tissues were used as test specimens in order to isolate endophytic bacteria by using dilution and separation methods. Bacillus ME9, derived from cassava endophytic bacteria, exhibits good antagonism against a diverse range of pathogens, including Xpm11. Its genome consists of a series of genes encoding antibacterial lipopeptides, which may be directly related to its antibacterial capabilities. Furthermore, inoculation resulted in a substantial change in the diversity of the endophytic bacterial community, characterized by improved diversity, and displayed an obvious inhibition of pathogenic bacterial growth, demonstrating successful colonization within plants. The results laid a foundation and provided theoretical support for the development and utilization of cassava endophytic bacterial diversity and endogenous disease control strategies.
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Affiliation(s)
- Yating Feng
- Sanya Nanfan Research Institute, Hainan University, Sanya 572025, China (O.U.S.)
- School of Tropical Agriculture and Forestry, Hainan University, Haikou 570228, China
| | - Yijie Zhang
- Sanya Nanfan Research Institute, Hainan University, Sanya 572025, China (O.U.S.)
- School of Tropical Agriculture and Forestry, Hainan University, Haikou 570228, China
| | - Obaid Ullah Shah
- Sanya Nanfan Research Institute, Hainan University, Sanya 572025, China (O.U.S.)
- Collaborative Innovation Center of Nanfan and High-Efficiency Tropical Agriculture, School of Tropical Crops, Hainan University, Haikou 570228, China
| | - Kai Luo
- Sanya Nanfan Research Institute, Hainan University, Sanya 572025, China (O.U.S.)
| | - Yinhua Chen
- Sanya Nanfan Research Institute, Hainan University, Sanya 572025, China (O.U.S.)
- School of Tropical Agriculture and Forestry, Hainan University, Haikou 570228, China
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9
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Adebayo WG. Cassava production in africa: A panel analysis of the drivers and trends. Heliyon 2023; 9:e19939. [PMID: 37809559 PMCID: PMC10559345 DOI: 10.1016/j.heliyon.2023.e19939] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2022] [Revised: 09/05/2023] [Accepted: 09/06/2023] [Indexed: 10/10/2023] Open
Abstract
Cassava is Africa's most important tuberous crop. It is an all-year-round cheap and reliable staple food for millions of Africans, making it vital for food security on the continent. However, cassava production in Africa is hindered by a persistent problem of low yield per hectare. This study addresses the dearth of research on the specific influences of area harvested and yield per hectare on cassava production in Africa. This work uses panel data from 37 African countries from 1961 to 2020 and sheds light on three key aspects. Firstly, it investigates the extent and nature of the low yield per hectare problem, offering insights into its underlying causes and implications. Secondly, it examines the interplay between area harvested and yield per hectare, revealing the factors driving the observed trends in cassava yields on the continent. Lastly, this study contributes to the achievement of Sustainable Development Goals, particularly Goal 15: Life on Land and Goal 2: Zero Hunger, by providing valuable information to enhance cassava production sustainability. The findings indicate that approximately 95.6% of the variability in production can be explained by changes in the area harvested, around 1.1% by yield variability, about 27.6% by consumer price index and 1.8% by temperature changes. Notably, the study observes a significant increase in the area harvested by 16.8 million hectares and average yield levels varied between 5.7 and 9.6 tonnes per hectare. The analysis also reveals a disparity in translating gains from disease eradication and introducing high-yield, disease-resistant varieties into smallholder cassava farming. In conclusion, the study highlights the potential for sustainable intensification of cassava production as a viable pathway to enhance absolute and per-hectare yields while promoting farmers' income and mitigating cassava cultivation-related deforestation. Understanding and addressing the low yield per hectare problem in cassava production are crucial steps toward ensuring food security and achieving sustainable agricultural practices in Africa.
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Affiliation(s)
- Waidi Gbenro Adebayo
- Department of Philosophy, Politics and Economics, Witten/Herdecke University, Witten, Germany
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10
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Pan R, Wang Y, An F, Yao Y, Xue J, Zhu W, Luo X, Lai H, Chen S. Genome-wide identification and characterization of 14-3-3 gene family related to negative regulation of starch accumulation in storage root of Manihot esculenta. FRONTIERS IN PLANT SCIENCE 2023; 14:1184903. [PMID: 37711300 PMCID: PMC10497974 DOI: 10.3389/fpls.2023.1184903] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/12/2023] [Accepted: 06/21/2023] [Indexed: 09/16/2023]
Abstract
The 14-3-3 protein family is a highly conservative member of the acid protein family and plays an important role in regulating a series of important biological activities and various signal transduction pathways. The role of 14-3-3 proteins in regulating starch accumulation still remains largely unknown. To investigate the properties of 14-3-3 proteins, the structures and functions involved in starch accumulation in storage roots were analyzed, and consequently, 16 Me14-3-3 genes were identified. Phylogenetic analysis revealed that Me14-3-3 family proteins are split into two groups (ε and non-ε). All Me14-3-3 proteins contain nine antiparallel α-helices. Me14-3-3s-GFP fusion protein was targeted exclusively to the nuclei and cytoplasm. In the early stage of starch accumulation in the storage root, Me14-3-3 genes were highly expressed in high-starch cultivars, while in the late stage of starch accumulation, Me14-3-3 genes were highly expressed in low-starch cultivars. Me14-3-3 I, II, V, and XVI had relatively high expression levels in the storage roots. The transgenic evidence from Me14-3-3II overexpression in Arabidopsis thaliana and the virus-induced gene silencing (VIGS) in cassava leaves and storage roots suggest that Me14-3-3II is involved in the negative regulation of starch accumulation. This study provides a new insight to understand the molecular mechanisms of starch accumulation linked with Me14-3-3 genes during cassava storage root development.
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Affiliation(s)
- Ranran Pan
- Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences/Key Laboratory of Ministry of Agriculture for Germplasm Resources Conservation and Utilization of Cassava, Haikou, China
- College of Tropical Crops, Hainan University, Haikou, China
| | - Yajie Wang
- Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences/Key Laboratory of Ministry of Agriculture of Biology and Genetic Resources of Tropical Crops, Haikou, China
| | - Feifei An
- Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences/Key Laboratory of Ministry of Agriculture for Germplasm Resources Conservation and Utilization of Cassava, Haikou, China
| | - Yuan Yao
- Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences/Key Laboratory of Ministry of Agriculture of Biology and Genetic Resources of Tropical Crops, Haikou, China
| | - Jingjing Xue
- Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences/Key Laboratory of Ministry of Agriculture for Germplasm Resources Conservation and Utilization of Cassava, Haikou, China
| | - Wenli Zhu
- Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences/Key Laboratory of Ministry of Agriculture for Germplasm Resources Conservation and Utilization of Cassava, Haikou, China
| | - Xiuqin Luo
- Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences/Key Laboratory of Ministry of Agriculture for Germplasm Resources Conservation and Utilization of Cassava, Haikou, China
| | - Hanggui Lai
- College of Tropical Crops, Hainan University, Haikou, China
| | - Songbi Chen
- Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences/Key Laboratory of Ministry of Agriculture for Germplasm Resources Conservation and Utilization of Cassava, Haikou, China
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Yang X, Cai J, Xue J, Luo X, Zhu W, Xiao X, Xue M, An F, Li K, Chen S. Magnesium chelatase subunit D is not only required for chlorophyll biosynthesis and photosynthesis, but also affecting starch accumulation in Manihot esculenta Crantz. BMC PLANT BIOLOGY 2023; 23:258. [PMID: 37189053 DOI: 10.1186/s12870-023-04224-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2023] [Accepted: 04/12/2023] [Indexed: 05/17/2023]
Abstract
BACKGROUND Magnesium chelatase plays an important role in photosynthesis, but only a few subunits have been functionally characterized in cassava. RESULTS Herein, MeChlD was successfully cloned and characterized. MeChlD encodes a magnesium chelatase subunit D, which has ATPase and vWA conservative domains. MeChlD was highly expressed in the leaves. Subcellular localization suggested that MeChlD:GFP was a chloroplast-localized protein. Furthermore, the yeast two-hybrid system and BiFC analysis indicated that MeChlD interacts with MeChlM and MePrxQ, respectively. VIGS-induce silencing of MeChlD resulted in significantly decreased chlorophyll content and reduction the expression of photosynthesis-related nuclear genes. Furthermore, the storage root numbers, fresh weight and the total starch content in cassava storage roots of VIGS-MeChlD plants was significantly reduced. CONCLUSION Taken together, MeChlD located at the chloroplast is not only required for chlorophyll biosynthesis and photosynthesis, but also affecting the starch accumulation in cassava. This study expands our understanding of the biological functions of ChlD proteins.
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Affiliation(s)
- Xingai Yang
- Key Laboratory of Ministry of Agriculture for Germplasm Resources Conservation and Utilization of Cassava, Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Science, Haikou, 571101, China
| | - Jie Cai
- Key Laboratory of Ministry of Agriculture for Germplasm Resources Conservation and Utilization of Cassava, Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Science, Haikou, 571101, China
| | - Jingjing Xue
- Key Laboratory of Ministry of Agriculture for Germplasm Resources Conservation and Utilization of Cassava, Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Science, Haikou, 571101, China
| | - Xiuqin Luo
- Key Laboratory of Ministry of Agriculture for Germplasm Resources Conservation and Utilization of Cassava, Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Science, Haikou, 571101, China
| | - Wenli Zhu
- Key Laboratory of Ministry of Agriculture for Germplasm Resources Conservation and Utilization of Cassava, Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Science, Haikou, 571101, China
| | - Xinhui Xiao
- Key Laboratory of Ministry of Agriculture for Germplasm Resources Conservation and Utilization of Cassava, Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Science, Haikou, 571101, China
| | - Maofu Xue
- Key Laboratory of Ministry of Agriculture for Germplasm Resources Conservation and Utilization of Cassava, Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Science, Haikou, 571101, China
| | - Feifei An
- Key Laboratory of Ministry of Agriculture for Germplasm Resources Conservation and Utilization of Cassava, Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Science, Haikou, 571101, China.
| | - Kaimian Li
- Key Laboratory of Ministry of Agriculture for Germplasm Resources Conservation and Utilization of Cassava, Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Science, Haikou, 571101, China.
| | - Songbi Chen
- Key Laboratory of Ministry of Agriculture for Germplasm Resources Conservation and Utilization of Cassava, Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Science, Haikou, 571101, China.
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Srivastava AK, Ewert F, Akinwumiju AS, Zeng W, Ceglar A, Ezui KS, Adelodun A, Adebayo A, Sobamowo J, Singh M, Rahimi J, Gaiser T. Cassava yield gap—A model-based assessment in Nigeria. FRONTIERS IN SUSTAINABLE FOOD SYSTEMS 2023. [DOI: 10.3389/fsufs.2022.1058775] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023] Open
Abstract
IntroductionCassava production is essential for food security in sub-Saharan Africa and serves as a major calorie-intake source in Nigeria. Estimating the yield gap in Nigeria is essential to indicate the most important limiting factors for production, and identify the yield gap hotspot areas. Secondly, these assessments may help set agendas in policy development and research prioritization where current information is scarce.Materials and methodsHere, Wwe used a crop model, LINTUL5, calibrated for five different cassava varieties based on field experiments embedded into a modeling framework SIMPLACE to estimate potential, water- and nutrient (current) limited cassava yield gaps (YG) as affected by climate factors and contributing a better understanding of yield gaps and its potentials in 30 states of Nigeria.ResultsOur study shows that cumulative radiation and precipitation were the most significant factors associated with cassava yield variability (p < 0.01). The YG averaged across states was estimated as 18.2 Ton7ha-1, with a maximum of 31.2 Ton7ha-1 35 in Kano state. Across the states, nutrient limitation accounts for 55.3% of the total cassava yield gap, while the remaining 44.7% is attributed to water limitation. The highest untapped water-limited yields were estimated in the northern states, such as Bauchi, Gombe, and Sokoto, characterized by the short rainy season.ConclusionOur results showed that most northern states are better equipped to become leading cassava producers in Nigeria under adequate crop management practices involving irrigation and soil fertility enhancement. We reached this conclusion because the northern states usually receive the highest radiation from their characteristic reduced cloud cover, even Therefore, policy and management interventions can be prioritized in these areas. Conclusively, the current cassava yield levels can be increased by a factor of five by emphasizing nutrient and soil health management and irrigation, particularly in areas characterized by a shorter rainy season (Sudan Savanna) in Nigeria.
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Rosado-Souza L, Yokoyama R, Sonnewald U, Fernie AR. Understanding source-sink interactions: Progress in model plants and translational research to crops. MOLECULAR PLANT 2023; 16:96-121. [PMID: 36447435 DOI: 10.1016/j.molp.2022.11.015] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2022] [Revised: 10/27/2022] [Accepted: 11/25/2022] [Indexed: 06/16/2023]
Abstract
Agriculture is facing a massive increase in demand per hectare as a result of an ever-expanding population and environmental deterioration. While we have learned much about how environmental conditions and diseases impact crop yield, until recently considerably less was known concerning endogenous factors, including within-plant nutrient allocation. In this review, we discuss studies of source-sink interactions covering both fundamental research in model systems under controlled growth conditions and how the findings are being translated to crop plants in the field. In this respect we detail efforts aimed at improving and/or combining C3, C4, and CAM modes of photosynthesis, altering the chloroplastic electron transport chain, modulating photorespiration, adopting bacterial/algal carbon-concentrating mechanisms, and enhancing nitrogen- and water-use efficiencies. Moreover, we discuss how modulating TCA cycle activities and primary metabolism can result in increased rates of photosynthesis and outline the opportunities that evaluating natural variation in photosynthesis may afford. Although source, transport, and sink functions are all covered in this review, we focus on discussing source functions because the majority of research has been conducted in this field. Nevertheless, considerable recent evidence, alongside the evidence from classical studies, demonstrates that both transport and sink functions are also incredibly important determinants of yield. We thus describe recent evidence supporting this notion and suggest that future strategies for yield improvement should focus on combining improvements in each of these steps to approach yield optimization.
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Affiliation(s)
- Laise Rosado-Souza
- Max-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany.
| | - Ryo Yokoyama
- Max-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany
| | - Uwe Sonnewald
- Department of Biochemistry, University of Erlangen-Nuremberg, Staudtstrasse 5, 91058 Erlangen, Germany
| | - Alisdair R Fernie
- Max-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany.
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Ruiz‐Vera UM, Balikian R, Larson TH, Ort DR. Evaluation of the effects of elevated CO 2 concentrations on the growth of cassava storage roots by destructive harvests and ground penetrating radar scanning approaches. PLANT, CELL & ENVIRONMENT 2023; 46:93-105. [PMID: 36305507 PMCID: PMC10099964 DOI: 10.1111/pce.14474] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/10/2022] [Revised: 10/18/2022] [Accepted: 10/22/2022] [Indexed: 06/16/2023]
Abstract
Cassava (Manihot esculenta Crantz) production will need to be improved to meet future food demands in Sub-Saharan Africa. The selection of high-yielding cassava cultivars requires a better understanding of storage root development. Additionally, since future production will happen under increasing atmospheric CO2 concentrations ([CO2 ]), cultivar selection should include responsiveness to elevated [CO2 ]. Five farmer-preferred African cassava cultivars were grown for three and a half months in a Free Air CO2 Enrichment experiment in central Illinois. Compared to ambient [CO2 ] (~400 ppm), cassava storage roots grown under elevated [CO2 ] (~600 ppm) had a higher biomass with some cultivars having lower storage root water content. The elevated [CO2 ] stimulation in storage root biomass ranged from 33% to 86% across the five cultivars tested documenting the importance of this trait in developing new cultivars. In addition to the destructive harvests to obtain storage root parameters, we explored ground penetrating radar as a nondestructive method to determine storage root growth across the growing season.
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Affiliation(s)
- Ursula M. Ruiz‐Vera
- Genomic Ecology of Global Change Research Theme, Carl R. Woese Institute for Genomic BiologyUniversity of Illinois at Urbana‐ChampaignIllinoisUrbanaUSA
- Present address:
Bayer CropScience LLC, Bayer Marana Greenhouse9475 N Sanders Rd, Tucson, AZ 85743, USA
| | - Riley Balikian
- Hydrogeology and Geophysics, Illinois State Geological SurveyUniversity of Illinois at Urbana‐ChampaignChampaignIllinoisUSA
| | - Timothy H. Larson
- Hydrogeology and Geophysics, Illinois State Geological SurveyUniversity of Illinois at Urbana‐ChampaignChampaignIllinoisUSA
| | - Donald R. Ort
- Genomic Ecology of Global Change Research Theme, Carl R. Woese Institute for Genomic BiologyUniversity of Illinois at Urbana‐ChampaignIllinoisUrbanaUSA
- Departments of Plant Biology & Crop SciencesUniversity of Illinois at Urbana‐ChampaignUrbanaIllinoisUSA
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Fan XW, Sun JL, Cai Z, Zhang F, Li YZ, Palta JA. MeSWEET15a/b genes play a role in the resistance of cassava (Manihot esculenta Crantz) to water and salt stress by modulating sugar distribution. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2023; 194:394-405. [PMID: 36481708 DOI: 10.1016/j.plaphy.2022.11.027] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2022] [Revised: 11/15/2022] [Accepted: 11/20/2022] [Indexed: 06/17/2023]
Abstract
The sugar transporter SWEET plays a role in plant growth, carbon allocation, and abiotic stress resistance. We examined the function of SWEET in cassava (Manihot esculenta Crantz) under water and salt stress. Bioinformatics, subcellular localization, yeast deficient complementation, and virus-induced gene silencing (VIGS) were used to examine the function of SWEET in cassava. Twenty-eight MeSWEETs genes were found based on the conserved domain MtN3/saliva of SWEET transporters, two MeSWEET15a/b of them were identified by phylogenetic analysis, which were located on the cell membrane. They transfer sucrose, fructose, glucose, and mannitol from culture media to yeast cells, predominately transferring sucrose via bleeding fluid saps in plant. Leaf sucrose content was increased in MeSWEET15a/b-silenced cassava plants, resulting in changes in carbon distribution, with an increase in starch accumulation in the leaves and a decrease in starch accumulation in the roots. The silencing of MeSWEET15a/b genes led to tolerance to water and salt stress, consistent with a high accumulation of osmolytes, and low lipid membrane peroxidation. Changes in sugar distribution increased the expression of MeTOR and MeE2Fa in pTRV2-MeSWEET15a and pTRV2-MeSWEET15b cassava leaves. MeSWEET15a/b acts as pivotal modulators of sugar distribution and tolerance to water and high salt stress in cassava.
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Affiliation(s)
- Xian-Wei Fan
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Life Science and Technology, Guangxi University; 100 Daxue Road, Nanning, Guangxi 530004, China.
| | - Jin-Liang Sun
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Life Science and Technology, Guangxi University; 100 Daxue Road, Nanning, Guangxi 530004, China
| | - Zheng Cai
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Life Science and Technology, Guangxi University; 100 Daxue Road, Nanning, Guangxi 530004, China
| | - Fan Zhang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Life Science and Technology, Guangxi University; 100 Daxue Road, Nanning, Guangxi 530004, China
| | - You-Zhi Li
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Life Science and Technology, Guangxi University; 100 Daxue Road, Nanning, Guangxi 530004, China
| | - Jairo A Palta
- CSIRO, Agriculture Flagship, Private Bag No. 5, Wembley, WA, 6913, Australia; School of Plant Biology, The University of Western Australia, 35 Stirling Hwy, Crawley, WA, 6009, Australia
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16
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Yin H, Yan Y, Hu W, Liu G, Zeng H, Wei Y, Shi H. Genome-wide association studies reveal genetic basis of ionomic variation in cassava. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2022; 112:1212-1223. [PMID: 36239073 DOI: 10.1111/tpj.16006] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2022] [Revised: 10/09/2022] [Accepted: 10/12/2022] [Indexed: 06/16/2023]
Abstract
As one of the most important food crops, cassava (Manihot esculenta) is the main dietary source of micronutrients for about 1 billion people. However, the ionomic variation in cassava and the underlying genetic mechanisms remain unclear so far. Herein, genome-wide association studies were performed to reveal the specific single nucleotide polymorphisms (SNPs) that affect the ionomic variation in cassava. We identified 164 SNPs with P-values lower than the threshold located in 88 loci associated with divergent ionomic variations. Among them, 13 SNPs are related to both calcium (Ca) and magnesium (Mg), and many loci for different ionomic traits seem to be clustered on specific chromosome regions. Moreover, we identified the peak SNPs in the promoter regions of Sc10g003170 (encoding methionyl-tRNA synthetase [MetRS]) and Sc18g015190 (encoding the transcriptional regulatory protein AlgP) for nitrogen (N) and phosphorus (P) accumulation, respectively. Notably, these two SNPs (chr10_32807962 and chr18_31343738) were directly correlated with the transcript levels of Sc10g003170 (MetRS) and Sc18g015190 (AlgP), which positively modulated N accumulation and P concentration in cassava, respectively. Taken together, this study provides important insight into the genetic basis of cassava natural ionomic variation, which will promote genetic breeding to improve nutrient use and accumulation of elements in cassava.
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Affiliation(s)
- Hongyan Yin
- Key Laboratory of Biotechnology of Salt Tolerant Crops of Hainan Province, Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources (Provincial Ministry Building State Key Laboratory Breeding Base), Sanya Nanfan Research Institute, College of Tropical Crops, Collaborative Innovation Center of Nanfan and High-Efficiency Tropical Agriculture, Hainan University, Hainan Province, Sanya and Haikou, China
| | - Yu Yan
- Key Laboratory of Biotechnology of Salt Tolerant Crops of Hainan Province, Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources (Provincial Ministry Building State Key Laboratory Breeding Base), Sanya Nanfan Research Institute, College of Tropical Crops, Collaborative Innovation Center of Nanfan and High-Efficiency Tropical Agriculture, Hainan University, Hainan Province, Sanya and Haikou, China
- Hainan Yazhou Bay Seed Laboratory, Hainan Province, Sanya, China
| | - Wei Hu
- Key Laboratory of Biology and Genetic Resources of Tropical Crops, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, 571101, Hainan Province, Haikou, Xueyuan Road 4, China
| | - Guoyin Liu
- Key Laboratory of Biotechnology of Salt Tolerant Crops of Hainan Province, Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources (Provincial Ministry Building State Key Laboratory Breeding Base), Sanya Nanfan Research Institute, College of Tropical Crops, Collaborative Innovation Center of Nanfan and High-Efficiency Tropical Agriculture, Hainan University, Hainan Province, Sanya and Haikou, China
- Hainan Yazhou Bay Seed Laboratory, Hainan Province, Sanya, China
| | - Hongqiu Zeng
- Key Laboratory of Biotechnology of Salt Tolerant Crops of Hainan Province, Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources (Provincial Ministry Building State Key Laboratory Breeding Base), Sanya Nanfan Research Institute, College of Tropical Crops, Collaborative Innovation Center of Nanfan and High-Efficiency Tropical Agriculture, Hainan University, Hainan Province, Sanya and Haikou, China
- Hainan Yazhou Bay Seed Laboratory, Hainan Province, Sanya, China
| | - Yunxie Wei
- Key Laboratory of Biotechnology of Salt Tolerant Crops of Hainan Province, Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources (Provincial Ministry Building State Key Laboratory Breeding Base), Sanya Nanfan Research Institute, College of Tropical Crops, Collaborative Innovation Center of Nanfan and High-Efficiency Tropical Agriculture, Hainan University, Hainan Province, Sanya and Haikou, China
- Hainan Yazhou Bay Seed Laboratory, Hainan Province, Sanya, China
| | - Haitao Shi
- Key Laboratory of Biotechnology of Salt Tolerant Crops of Hainan Province, Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources (Provincial Ministry Building State Key Laboratory Breeding Base), Sanya Nanfan Research Institute, College of Tropical Crops, Collaborative Innovation Center of Nanfan and High-Efficiency Tropical Agriculture, Hainan University, Hainan Province, Sanya and Haikou, China
- Hainan Yazhou Bay Seed Laboratory, Hainan Province, Sanya, China
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17
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Wei Y, Zhu B, Ma G, Shao X, Xie H, Cheng X, Zeng H, Shi H. The coordination of melatonin and anti-bacterial activity by EIL5 underlies ethylene-induced disease resistance in cassava. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2022; 111:683-697. [PMID: 35608142 DOI: 10.1111/tpj.15843] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2022] [Revised: 05/14/2022] [Accepted: 05/20/2022] [Indexed: 06/15/2023]
Abstract
Ethylene and melatonin are widely involved in plant development and environmental stress responses. However, the role of their direct relationship in the immune response and the underlying molecular mechanisms in plants remain elusive. Here, we found that Xanthomonas axonopodis pv. manihotis (Xam) infection increased endogenous ethylene levels, which positively modulated plant disease resistance through activating melatonin accumulation in cassava. In addition, the ethylene-responsive transcription factor ETHYLENE INSENSITIVE LIKE5 (MeEIL5), a positive regulator of disease resistance, was essential for ethylene-induced melatonin accumulation and disease resistance in cassava. Notably, the identification of heat stress transcription factor 20 (MeHsf20) as an interacting protein of MeEIL5 indicated the association between ethylene and melatonin in plant disease resistance. MeEIL5 physically interacted with MeHsf20 to promote the transcriptional activation of the gene encoding N-acetylserotonin O-methyltransferase 2 (MeASMT2), thereby improving melatonin accumulation. Moreover, MeEIL5 promoted the physical interaction of MeHsf20 and pathogen-related gene 3 (MePR3), resulting in improved anti-bacterial activity of MePR3. This study illustrates the dual roles of MeEIL5 in fine-tuning MeHsf20-mediated coordination of melatonin biosynthesis and anti-bacterial activity, highlighting the ethylene-responsive MeEIL5 as the integrator of ethylene and melatonin signals in the immune response in cassava.
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Affiliation(s)
- Yunxie Wei
- Key Laboratory of Biotechnology of Salt Tolerant Crops of Hainan Province, Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources (Provincial Ministry Building State Key Laboratory Breeding Base), College of Tropical Crops, Hainan University, Haikou, Hainan, 570228, China
- Sanya Nanfan Research Institute of Hainan University, Hainan Yazhou Bay Seed Laboratory, Sanya, Hainan, 572025, China
| | - Binbin Zhu
- Key Laboratory of Biotechnology of Salt Tolerant Crops of Hainan Province, Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources (Provincial Ministry Building State Key Laboratory Breeding Base), College of Tropical Crops, Hainan University, Haikou, Hainan, 570228, China
| | - Guowen Ma
- Key Laboratory of Biotechnology of Salt Tolerant Crops of Hainan Province, Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources (Provincial Ministry Building State Key Laboratory Breeding Base), College of Tropical Crops, Hainan University, Haikou, Hainan, 570228, China
| | - Xiaodie Shao
- Key Laboratory of Biotechnology of Salt Tolerant Crops of Hainan Province, Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources (Provincial Ministry Building State Key Laboratory Breeding Base), College of Tropical Crops, Hainan University, Haikou, Hainan, 570228, China
| | - Haoqi Xie
- Key Laboratory of Biotechnology of Salt Tolerant Crops of Hainan Province, Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources (Provincial Ministry Building State Key Laboratory Breeding Base), College of Tropical Crops, Hainan University, Haikou, Hainan, 570228, China
| | - Xiao Cheng
- Key Laboratory of Biotechnology of Salt Tolerant Crops of Hainan Province, Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources (Provincial Ministry Building State Key Laboratory Breeding Base), College of Tropical Crops, Hainan University, Haikou, Hainan, 570228, China
| | - Hongqiu Zeng
- Key Laboratory of Biotechnology of Salt Tolerant Crops of Hainan Province, Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources (Provincial Ministry Building State Key Laboratory Breeding Base), College of Tropical Crops, Hainan University, Haikou, Hainan, 570228, China
- Sanya Nanfan Research Institute of Hainan University, Hainan Yazhou Bay Seed Laboratory, Sanya, Hainan, 572025, China
| | - Haitao Shi
- Key Laboratory of Biotechnology of Salt Tolerant Crops of Hainan Province, Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources (Provincial Ministry Building State Key Laboratory Breeding Base), College of Tropical Crops, Hainan University, Haikou, Hainan, 570228, China
- Sanya Nanfan Research Institute of Hainan University, Hainan Yazhou Bay Seed Laboratory, Sanya, Hainan, 572025, China
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Young SNR, Dunning LT, Liu H, Stevens CJ, Lundgren MR. C4 trees have a broader niche than their close C3 relatives. JOURNAL OF EXPERIMENTAL BOTANY 2022; 73:3189-3204. [PMID: 35293994 PMCID: PMC9126736 DOI: 10.1093/jxb/erac113] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/30/2021] [Accepted: 03/12/2022] [Indexed: 06/14/2023]
Abstract
Previous studies have demonstrated the ecological sorting of herbaceous C3 and C4 species along gradients of precipitation and temperature: C4 herbaceous species typically occupy drier and warmer environments than their C3 relatives. However, it is unclear if this pattern holds true for C4 tree species, which are unique to Euphorbiaceae and found only on the Hawaiian Islands. Here, we combine occurrence data with local environmental and soil datasets to, for the first time, distinguish the ecological factors associated with photosynthetic diversification in the tree life form. These data are presented within a phylogenetic framework. We show that C3 and C4 trees inhabit similar environments, but that C4 photosynthesis expands the ecological niche in trees relative to that of C3 tree species. In particular, when compared with C3 trees, C4 trees moved into higher elevation habitats with characteristically sparse vegetation (and thus greater sunlight) and cooler temperatures, a pattern which contrasts with that of herbaceous species. Understanding the relationship between C4 photosynthesis and ecological niche in tree species has implications for establishing how C4 photosynthesis has, in this rare instance, evolved in trees, and whether this unique combination of traits could be exploited from an engineering perspective.
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Affiliation(s)
- Sophie N R Young
- Lancaster Environment Centre, Lancaster University, Lancaster LA1 4YQ, UK
| | - Luke T Dunning
- Ecology and Evolutionary Biology, School of Biosciences, University of Sheffield, Sheffield S10 2TN, UK
| | - Hui Liu
- Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems, Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Xingke Road 723, Guangzhou 510650, China
| | - Carly J Stevens
- Lancaster Environment Centre, Lancaster University, Lancaster LA1 4YQ, UK
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Odile Raphaëlle ND, Kwassi T, Benjamin AM, Oke O, Okanlawo O, Kokou T. Use of
Manihot esculenta
leaves on physiological and production parameters of Sasso breeder hens. Vet Med Sci 2022; 8:1547-1552. [PMID: 35429366 PMCID: PMC9297775 DOI: 10.1002/vms3.797] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022] Open
Abstract
Background The world population is increasing, leading to competition between humans and animals for the use of farm produce. The use of non‐conventional resources in poultry feed is increasingly being explored. Cassava (Manihot esculenta) have been studied in layers and broilers feed. However, there is very little information on the impact of the leaves on breeder hens. Objectives This study was conducted to determine the effect of M. esculenta leaf meal (MELM) on breeder hen performance, hatching egg quality and blood parameters. Methods A total of 180 hens and 24 cocks Sasso breeders at 32 weeks of age were used and equally assigned into two dietary treatments having six replicates of 15 hens and two cocks each. The dietary treatments were basal diet supplemented with 0% MELM and basal diet supplemented with the MELM group (5% MELM). Data were collected on feed intake, egg production, feed conversion ratio as well as egg quality indices during the experiment. The blood samples were collected from 18 birds per treatment (three3 per replication) for the determination of total protein, uric acid, triglycerides and total cholesterol at 45th week of age. Results The results showed that there was no significant difference on the feed intake of the birds across the treatments. Average egg weight and egg production were higher with a lower (p < 0.05) feed conversion rate in the MELM group hens. Total protein, uric acids, total cholesterol and triglyceride level increased significantly (p < 0.05) in hens fed 5 % of MELM. The proportions of yolk, egg shell and Haugh unit showed no significant difference between the treatments, while the proportion of albumen and yolk colour increased significantly (p < 0.05) in the MELM group hens. Conclusions It was concluded that 5% MELM can be used as feed ingredients in formulating breeder hen diets to improve productive performance.
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Affiliation(s)
| | - Tona Kwassi
- Centre d`Excellence Régionale sur les Science Aviares (CERSA) Université de Lomé Lomé Togo
| | - Adjei Mensah Benjamin
- Centre d`Excellence Régionale sur les Science Aviares (CERSA) Université de Lomé Lomé Togo
| | - Oyegunle Oke
- Department of Animal Physiology, Federal University of Agriculture Abeokuta Nigeria
| | - Onagbessan Okanlawo
- Department of Animal Physiology, Federal University of Agriculture Abeokuta Nigeria
| | - Tona Kokou
- Centre d`Excellence Régionale sur les Science Aviares (CERSA) Université de Lomé Lomé Togo
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Chiewchankaset P, Thaiprasit J, Kalapanulak S, Wojciechowski T, Boonjing P, Saithong T. Effective Metabolic Carbon Utilization and Shoot-to-Root Partitioning Modulate Distinctive Yield in High Yielding Cassava Variety. FRONTIERS IN PLANT SCIENCE 2022; 13:832304. [PMID: 35251103 PMCID: PMC8888839 DOI: 10.3389/fpls.2022.832304] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/09/2021] [Accepted: 01/20/2022] [Indexed: 06/14/2023]
Abstract
Increasing cassava production could mitigate one of the global food insecurity challenges by providing a sustainable food source. To improve the yield potential, physiological strategies (i.e., the photosynthetic efficiency, source-to-sink carbon partitioning, and intracellular carbon metabolism) can be applied in breeding to screen for superior genotypes. However, the influences of source-to-sink carbon partitioning and carbon metabolism on the storage root development of cassava are relatively little understood. We hypothesized that carbon partitioning and utilization vary modulating the distinctive storage root yields of high and low-yielding cassava varieties, represented in this study by varieties Kasetsart 50 (KU50) and Hanatee (HN), respectively. Plant growth, photosynthesis measurements, soluble sugars, and starch contents of individual tissues were analyzed at different developmental stages. Also, the diurnal patterns of starch accumulation and degradation in leaves were investigated through iodine staining. Despite a comparable photosynthetic rate, KU50 grew better and yielded greater storage roots than HN. Interestingly, both varieties differed in their carbon partitioning strategies. KU50 had a high photosynthetic capacity and was better efficient in converting photoassimilates to carbon substrates and allocating them to sink organs for their growth. In contrast, HN utilized the photoassimilates at a high metabolic cost, in terms of respiration, and inefficiently allocated carbon to stems rather than storage roots. These results highlighted that carbon assimilation and allocation are genetic potential characteristics of individual varieties, which in effect determine plant growth and storage root yield of cassava. The knowledge gained from this study sheds light on potential strategies for developing new high-yielding genotypes in cassava breeding programs.
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Affiliation(s)
- Porntip Chiewchankaset
- Center for Agricultural Systems Biology (CASB), Systems Biology and Bioinformatics Research Group, Pilot Plant Development and Training Institute, King Mongkut’s University of Technology Thonburi (Bang Khun Thian), Bangkok, Thailand
| | - Jittrawan Thaiprasit
- Center for Agricultural Systems Biology (CASB), Systems Biology and Bioinformatics Research Group, Pilot Plant Development and Training Institute, King Mongkut’s University of Technology Thonburi (Bang Khun Thian), Bangkok, Thailand
| | - Saowalak Kalapanulak
- Center for Agricultural Systems Biology (CASB), Systems Biology and Bioinformatics Research Group, Pilot Plant Development and Training Institute, King Mongkut’s University of Technology Thonburi (Bang Khun Thian), Bangkok, Thailand
- Bioinformatics and Systems Biology Program, School of Bioresources and Technology, King Mongkut’s University of Technology Thonburi (Bang Khun Thian), Bangkok, Thailand
| | - Tobias Wojciechowski
- Bioinformatics and Systems Biology Program, School of Bioresources and Technology, King Mongkut’s University of Technology Thonburi (Bang Khun Thian), Bangkok, Thailand
- Institute of Biosciences and Geosciences (IBG-2): Plant Sciences, Forschungszentrum Jülich GmbH, Wilhelm-Johnen-Strasse, Jülich, Germany
| | - Patwira Boonjing
- Center for Agricultural Systems Biology (CASB), Systems Biology and Bioinformatics Research Group, Pilot Plant Development and Training Institute, King Mongkut’s University of Technology Thonburi (Bang Khun Thian), Bangkok, Thailand
| | - Treenut Saithong
- Center for Agricultural Systems Biology (CASB), Systems Biology and Bioinformatics Research Group, Pilot Plant Development and Training Institute, King Mongkut’s University of Technology Thonburi (Bang Khun Thian), Bangkok, Thailand
- Bioinformatics and Systems Biology Program, School of Bioresources and Technology, King Mongkut’s University of Technology Thonburi (Bang Khun Thian), Bangkok, Thailand
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21
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Jaramillo AM, Sierra S, Chavarriaga-Aguirre P, Castillo DK, Gkanogiannis A, López-Lavalle LAB, Arciniegas JP, Sun T, Li L, Welsch R, Boy E, Álvarez D. Characterization of cassava ORANGE proteins and their capability to increase provitamin A carotenoids accumulation. PLoS One 2022; 17:e0262412. [PMID: 34995328 PMCID: PMC8741059 DOI: 10.1371/journal.pone.0262412] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2020] [Accepted: 12/23/2021] [Indexed: 11/19/2022] Open
Abstract
Cassava (Manihot esculenta Crantz) biofortification with provitamin A carotenoids is an ongoing process that aims to alleviate vitamin A deficiency. The moderate content of provitamin A carotenoids achieved so far limits the contribution to providing adequate dietary vitamin A levels. Strategies to increase carotenoid content focused on genes from the carotenoids biosynthesis pathway. In recent years, special emphasis was given to ORANGE protein (OR), which promotes the accumulation of carotenoids and their stability in several plants. The aim of this work was to identify, characterize and investigate the role of OR in the biosynthesis and stabilization of carotenoids in cassava and its relationship with phytoene synthase (PSY), the rate-limiting enzyme of the carotenoids biosynthesis pathway. Gene and protein characterization of OR, expression levels, protein amounts and carotenoids levels were evaluated in roots of one white (60444) and two yellow cassava cultivars (GM5309-57 and GM3736-37). Four OR variants were found in yellow cassava roots. Although comparable expression was found for three variants, significantly higher OR protein amounts were observed in the yellow varieties. In contrast, cassava PSY1 expression was significantly higher in the yellow cultivars, but PSY protein amount did not vary. Furthermore, we evaluated whether expression of one of the variants, MeOR_X1, affected carotenoid accumulation in cassava Friable Embryogenic Callus (FEC). Overexpression of maize PSY1 alone resulted in carotenoids accumulation and induced crystal formation. Co-expression with MeOR_X1 led to greatly increase of carotenoids although PSY1 expression was high in the co-expressed FEC. Our data suggest that posttranslational mechanisms controlling OR and PSY protein stability contribute to higher carotenoid levels in yellow cassava. Moreover, we showed that cassava FEC can be used to study the efficiency of single and combinatorial gene expression in increasing the carotenoid content prior to its application for the generation of biofortified cassava with enhanced carotenoids levels.
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Affiliation(s)
- Angélica M. Jaramillo
- HarvestPlus, c/o The Alliance of Bioversity International and the International Center for Tropical Agriculture (CIAT), Cali, Colombia
| | - Santiago Sierra
- The Alliance of Bioversity International and the International Center for Tropical Agriculture (CIAT), Cali, Colombia
| | - Paul Chavarriaga-Aguirre
- The Alliance of Bioversity International and the International Center for Tropical Agriculture (CIAT), Cali, Colombia
| | - Diana Katherine Castillo
- The Alliance of Bioversity International and the International Center for Tropical Agriculture (CIAT), Cali, Colombia
| | - Anestis Gkanogiannis
- The Alliance of Bioversity International and the International Center for Tropical Agriculture (CIAT), Cali, Colombia
| | | | - Juan Pablo Arciniegas
- The Alliance of Bioversity International and the International Center for Tropical Agriculture (CIAT), Cali, Colombia
| | - Tianhu Sun
- Robert W. Holley Center for Agriculture and Health, USDA-ARS, Cornell University, Ithaca, New York, United States of America
| | - Li Li
- Robert W. Holley Center for Agriculture and Health, USDA-ARS, Cornell University, Ithaca, New York, United States of America
| | - Ralf Welsch
- Faculty of Biology II, University of Freiburg, Freiburg, Germany
| | - Erick Boy
- HarvestPlus, International Food Policy Research Institute, Washington, DC, United States of America
| | - Daniel Álvarez
- HarvestPlus, c/o The Alliance of Bioversity International and the International Center for Tropical Agriculture (CIAT), Cali, Colombia
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22
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Lima ASD, Silva JFDS, Souza MTDC, Vieira MSB, Praxedes RF, Ribeiro JDS, Cardoso DB, Rangel AHDN, Carvalho FFRD, Lima Júnior DMD. Carcass characteristics and meat quality of lambs fed with cassava foliage hay and spineless cactus. Anim Sci J 2021; 92:e13519. [PMID: 33554410 DOI: 10.1111/asj.13519] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2020] [Revised: 12/21/2020] [Accepted: 12/24/2020] [Indexed: 11/30/2022]
Abstract
The objective of this study was to evaluate the influence of the total or partial replacement of Tifton 85 hay (TH) by cassava foliage hay (CH) and/or spineless cactus (SC) on the carcass characteristics and meat quality of confined lambs. Thirty-five Dorper x Santa Inês crossbred lambs were used, with an initial average weight of 16.0 ± 1.9 kg, fed with five treatment diets: 70% TH, 70% CH, 35% TH + 35% CH, 35% TH + 35% SC, and 35% CH + 35% SC. After 90 days of confinement, the animals were slaughtered and the carcass and meat data were compared using the Tukey test at 5%. The partial replacement of TH by SC increased the cold carcass weight by 3.9 kg (p < .05). The proportion of fat (%) increased (p < .05) when TH was replaced by CH + SC. The intensity of red (a*) was lower (p < .05) in the meat of animals fed with CH or CH + SC. It is recommended to partially replace TH with SC, or to replace totally with CH in association with SC.
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Wei Y, Zeng H, Liu W, Cheng X, Zhu B, Guo J, Shi H. Autophagy-related genes serve as heat shock protein 90 co-chaperones in disease resistance against cassava bacterial blight. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2021; 107:925-937. [PMID: 34037995 DOI: 10.1111/tpj.15355] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/17/2020] [Revised: 05/10/2021] [Accepted: 05/20/2021] [Indexed: 06/12/2023]
Abstract
Heat shock protein 90 (HSP90) is involved in plant growth and various stress responses via regulating protein homeostasis. Autophagy keeps cellular homeostasis by recycling the components of cellular cytoplasmic constituents. Although they have similar effects on cellular protein homeostasis, the direct association between HSP90 and autophagy signaling remains unclear in plants, especially in tropical crops. In this study, the correlation between HSP90 and autophagy signaling was systematically analyzed by protein-protein interaction in cassava, one of the most important economy fruit in tropic. In addition, their effects on plant disease response and underlying mechanisms in cassava were investigated by functional genomics and genetic phenotype assay. The potential MeHSP90.9-MeSGT1-MeRAR1 chaperone complex interacts with MeATGs and subsequently triggers autophagy signaling, conferring improved disease resistance to cassava bacterial blight (CBB). On the contrary, HSP90 inhibitor and autophagy inhibitor decreased disease resistance against CBB in cassava, and autophagy may be involved in the potential MeHSP90.9-MeSGT1-MeRAR1 chaperone complex-mediated multiple immune responses. This study highlights the precise modulation of autophagy signaling by potential MeHSP90.9-MeSGT1-MeRAR1 chaperone complex in autophagy-mediated disease resistance to CBB.
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Affiliation(s)
- Yunxie Wei
- Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, Haikou, Hainan, 570228, China
| | - Hongqiu Zeng
- Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, Haikou, Hainan, 570228, China
| | - Wen Liu
- Key Laboratory of Three Gorges Regional Plant Genetics & Germplasm Enhancement (CTGU)/Biotechnology Research Center, College of Biological and Pharmaceutical Sciences, China Three Gorges University, Yichang, Hubei, 443002, China
| | - Xiao Cheng
- Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, Haikou, Hainan, 570228, China
| | - Binbin Zhu
- Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, Haikou, Hainan, 570228, China
| | - Jingru Guo
- Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, Haikou, Hainan, 570228, China
| | - Haitao Shi
- Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, Haikou, Hainan, 570228, China
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24
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De Bauw P, Birindwa D, Merckx R, Boeraeve M, Munyahali W, Peeters G, Bolaji T, Honnay O. Improved genotypes and fertilizers, not fallow duration, increase cassava yields without compromising arbuscular mycorrhizal fungus richness or diversity. MYCORRHIZA 2021; 31:483-496. [PMID: 34173082 DOI: 10.1007/s00572-021-01039-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2021] [Accepted: 06/09/2021] [Indexed: 06/13/2023]
Abstract
Arbuscular mycorrhizal fungi (AMF) are ubiquitous in agroecosystems, but their role in mediating agricultural yield remains contested. Field experiments testing effects of realistic agronomic practices of intensification on AM fungus composition and yields are scarce, especially in the low-input systems of sub-Saharan Africa. A large, full-factorial field experiment was conducted in South-Kivu (DR Congo), testing effects of fallow duration (6 vs. 12 months), genotype (landrace vs. improved), and fertilizer management (control vs. five combinations omitting N, P, K, and/or secondary macro- and micronutrients) on yields of cassava, an important staple crop strongly colonized by AMF. Furthermore, we used DNA-metabarcoding to evaluate effects of these agronomic practices on the AM fungal communities on the roots. The shorter fallow duration strongly increased diversity and richness of AMF, but this did not correspond with increased yields. Cassava yield was mainly determined by genotype, being largest for the improved genotype, which coincided with a significantly higher sum of AM fungal sequences. Effects of fertilizer or genotype on community composition were minor to absent. We found no evidence that increased AMF richness and diversity enhanced cassava yields. In contrast, the use of the improved genotype and mineral fertilizers strongly benefitted yields, without compromising richness or diversity of AMF. Cassava-AMF associations in this work appear robust to fertilizer amendments and modern genotype improvement.
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Affiliation(s)
- Pieterjan De Bauw
- Department of Earth and Environmental Sciences, Division Soil and Water Management, Kasteelpark Arenberg, 20-3001, Leuven, KU, Belgium.
| | - Damas Birindwa
- Department of Earth and Environmental Sciences, Division Soil and Water Management, Kasteelpark Arenberg, 20-3001, Leuven, KU, Belgium
- Université Catholique de Bukavu (UCB), Bukavu, Democratic Republic of the Congo
| | - Roel Merckx
- Department of Earth and Environmental Sciences, Division Soil and Water Management, Kasteelpark Arenberg, 20-3001, Leuven, KU, Belgium
| | - Margaux Boeraeve
- Department of Biology, Plant Conservation and Population Biology, KU Leuven, B-3001, Leuven, Belgium
| | - Wivine Munyahali
- Université Catholique de Bukavu (UCB), Bukavu, Democratic Republic of the Congo
| | - Gerrit Peeters
- Department of Biology, Plant Conservation and Population Biology, KU Leuven, B-3001, Leuven, Belgium
| | - Thanni Bolaji
- Department of Biology, Plant Conservation and Population Biology, KU Leuven, B-3001, Leuven, Belgium
| | - Olivier Honnay
- Department of Biology, Plant Conservation and Population Biology, KU Leuven, B-3001, Leuven, Belgium
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25
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Moreno-Cadena P, Hoogenboom G, Cock JH, Ramirez-Villegas J, Pypers P, Kreye C, Tariku M, Ezui KS, Becerra Lopez-Lavalle LA, Asseng S. Modeling growth, development and yield of cassava: A review. FIELD CROPS RESEARCH 2021; 267:108140. [PMID: 34140751 PMCID: PMC8146721 DOI: 10.1016/j.fcr.2021.108140] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
Cassava is an important crop in the developing world. The goal of this study was to review published cassava models (18) for their capability to simulate storage root biomass and to categorize them into static and dynamic models. The majority (14) are dynamic and capture within season growth dynamics. Most (13) of the dynamic models consider environmental factors such as temperature, solar radiation, soil water and nutrient restrictions. More than half (10) have been calibrated for a distinct genotype. Only one of the four static models includes environmental variables. While the static regression models are useful to estimate final yield, their application is limited to the locations or varieties used for their development unless recalibrated for distinct conditions. Dynamic models simulate growth process and provide estimates of yield over time with, in most cases, no fixed maturity date. The dynamic models that simulate the detailed development of nodal units tend to be less accurate in determining final yield compared to the simpler dynamic and statistic models. However, they can be more safely applied to novel environmental conditions that can be explored in silico. Deficiencies in the current models are highlighted including suggestions on how they can be improved. None of the current dynamic cassava models adequately simulates the starch content of fresh cassava roots with almost all models based on dry biomass simulations. Further studies are necessary to develop a new module for existing cassava models to simulate cassava quality.
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Affiliation(s)
- Patricia Moreno-Cadena
- Agricultural and Biological Engineering Department, University of Florida, 101 Frazier Rogers Hall, PO Box 110570, Gainesville, FL, 32611-0570, USA
- Alliance of Bioversity International and International Center for Tropical Agriculture (CIAT), km 17 recta Cali–Palmira, 763537, Cali, Colombia
- International Institute of Tropical Agriculture (IITA), Ibadan, Nigeria
- Corresponding author at: Agricultural and Biological Engineering Department, University of Florida, 101 Frazier Rogers Hall, PO Box 110570, Gainesville, FL, 32611-0570, USA.
| | - Gerrit Hoogenboom
- Agricultural and Biological Engineering Department, University of Florida, 101 Frazier Rogers Hall, PO Box 110570, Gainesville, FL, 32611-0570, USA
- Institute for Sustainable Food Systems, University of Florida, 101 Frazier Rogers Hall, PO Box 110570, Gainesville, FL, 32611-0570, USA
| | - James H. Cock
- Alliance of Bioversity International and International Center for Tropical Agriculture (CIAT), km 17 recta Cali–Palmira, 763537, Cali, Colombia
| | - Julian Ramirez-Villegas
- Alliance of Bioversity International and International Center for Tropical Agriculture (CIAT), km 17 recta Cali–Palmira, 763537, Cali, Colombia
- CGIAR Research Program on Climate Change, Agriculture and Food Security (CCAFS), Cali, Colombia
| | - Pieter Pypers
- International Institute of Tropical Agriculture (IITA), ICIPE Campus, P.O. Box 30772-00100, Nairobi, Kenya
| | - Christine Kreye
- International Institute of Tropical Agriculture (IITA), Ibadan, Nigeria
| | - Meklit Tariku
- International Institute of Tropical Agriculture (IITA), ICIPE Campus, P.O. Box 30772-00100, Nairobi, Kenya
| | - Kodjovi Senam Ezui
- African Plant Nutrition Institute (APNI), ICIPE Campus, Duduville – Kasarani, Thika Road, Nairobi, Kenya
| | - Luis Augusto Becerra Lopez-Lavalle
- Alliance of Bioversity International and International Center for Tropical Agriculture (CIAT), km 17 recta Cali–Palmira, 763537, Cali, Colombia
| | - Senthold Asseng
- Agricultural and Biological Engineering Department, University of Florida, 101 Frazier Rogers Hall, PO Box 110570, Gainesville, FL, 32611-0570, USA
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26
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Ruiz-Vera UM, De Souza AP, Ament MR, Gleadow RM, Ort DR. High sink strength prevents photosynthetic down-regulation in cassava grown at elevated CO2 concentration. JOURNAL OF EXPERIMENTAL BOTANY 2021; 72:542-560. [PMID: 33045084 PMCID: PMC7853607 DOI: 10.1093/jxb/eraa459] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/10/2020] [Accepted: 10/06/2020] [Indexed: 05/20/2023]
Abstract
Cassava has the potential to alleviate food insecurity in many tropical regions, yet few breeding efforts to increase yield have been made. Improved photosynthetic efficiency in cassava has the potential to increase yields, but cassava roots must have sufficient sink strength to prevent carbohydrates from accumulating in leaf tissue and suppressing photosynthesis. Here, we grew eight farmer-preferred African cassava cultivars under free-air CO2 enrichment (FACE) to evaluate the sink strength of cassava roots when photosynthesis increases due to elevated CO2 concentrations ([CO2]). Relative to the ambient treatments, elevated [CO2] treatments increased fresh (+27%) and dry (+37%) root biomass, which was driven by an increase in photosynthesis (+31%) and the absence of photosynthetic down-regulation over the growing season. Moreover, intrinsic water use efficiency improved under elevated [CO2] conditions, while leaf protein content and leaf and root cyanide concentrations were not affected. Overall, these results suggest that higher cassava yields can be expected as atmospheric [CO2] increases over the coming decades. However, there were cultivar differences in the partitioning of resources to roots versus above-grown biomass; thus, the particular responses of each cultivar must be considered when selecting candidates for improvement.
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Affiliation(s)
- Ursula M Ruiz-Vera
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA
| | - Amanda P De Souza
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA
| | - Michael R Ament
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA
| | - Roslyn M Gleadow
- School of Biological Sciences, Monash University, Clayton, Victoria, Australia
| | - Donald R Ort
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA
- Departments of Plant Biology and Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, IL, USA
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27
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Wei Y, Zhu B, Liu W, Cheng X, Lin D, He C, Shi H. Heat shock protein 90 co-chaperone modules fine-tune the antagonistic interaction between salicylic acid and auxin biosynthesis in cassava. Cell Rep 2021; 34:108717. [PMID: 33535044 DOI: 10.1016/j.celrep.2021.108717] [Citation(s) in RCA: 29] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2020] [Revised: 11/27/2020] [Accepted: 01/12/2021] [Indexed: 11/29/2022] Open
Abstract
Heat shock protein 90 (HSP90) is an important molecular chaperone in plants. However, HSP90-mediated plant immune response remains elusive in cassava. In this study, cassava bacterial blight (CBB) induces the expression of MeHsf8, which directly targets MeHSP90.9 to activate its expression and immune response. Further identification of SHI-related sequence 1 (MeSRS1) and MeWRKY20 as MeHSP90.9 co-chaperones revealed the underlying mechanism of MeHSP90.9-mediated immune response. MeHSP90.9 interacts with MeSRS1 and MeWRKY20 to promote their transcriptional activation of salicylic acid (SA) biosynthetic gene avrPphB Susceptible 3 (MePBS3) and tryptophan metabolic gene N-acetylserotonin O-methyltransferase 2 (MeASMT2), respectively, so as to activate SA biosynthesis but inhibit tryptophan-derived auxin biosynthesis. Notably, genetic experiments confirmed that overexpressing MePBS3 and MeASMT2 could rescue the effects of silencing MeHsf8-MeHSP90.9 on disease resistance. This study highlights the dual regulation of SA and auxin biosynthesis by MeHSP90.9, providing the mechanistic understanding of MeHSP90.9 client partners in plant immunity.
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Affiliation(s)
- Yunxie Wei
- Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, Haikou, Hainan 570228, China
| | - Binbin Zhu
- Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, Haikou, Hainan 570228, China
| | - Wen Liu
- Key Laboratory of Three Gorges Regional Plant Genetics & Germplasm Enhancement (CTGU)/Biotechnology Research Center, College of Biological and Pharmaceutical Sciences, China Three Gorges University, Yichang, Hubei 443002, China
| | - Xiao Cheng
- Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, Haikou, Hainan 570228, China
| | - Daozhe Lin
- Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, Haikou, Hainan 570228, China
| | - Chaozu He
- Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, Haikou, Hainan 570228, China
| | - Haitao Shi
- Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, Haikou, Hainan 570228, China.
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28
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Chang Y, Bai Y, Wei Y, Shi H. CAMTA3 negatively regulates disease resistance through modulating immune response and extensive transcriptional reprogramming in cassava. TREE PHYSIOLOGY 2020; 40:1520-1533. [PMID: 32705122 DOI: 10.1093/treephys/tpaa093] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/11/2020] [Accepted: 07/06/2020] [Indexed: 06/11/2023]
Abstract
As one of the important crops in the world, cassava production is seriously threatened by Xanthomonas axonopodis pv. manihotis (Xam) all year round. Calmodulin-binding transcription activators (CAMTAs) play key roles in biotic stress and abiotic stress in plants, however, their roles in cassava remain elusive. In this study, six MeCAMTAs were identified, and MeCAMTA3 with the highest induction upon Xam infection was confirmed as a transcription factor that binds to the vCGCGb motif. MeCAMTA3 negatively regulates plant disease resistance against Xam. On the one hand, MeCAMTA3 negatively regulated endogenous salicylic acid and reactive oxygen species accumulation, pathogenesis-related genes MePRs' transcripts and callose deposition during cassava-Xam interaction but not under control conditions. On the other hand, RNA sequencing showed extensive transcriptional reprogramming by MeCAMTA3, especially 18 genes with a vCGCGb motif in the promoter region in hormone signaling, antioxidant signaling and other disease resistance signaling. Notably, chromatin immunoprecipitation-polymerase chain reaction showed that eight of these genes might be directly regulated by MeCAMTA3 through transcriptional repression. In summary, MeCAMTA3 negatively regulates plant disease resistance against cassava bacterial blight through modulation of multiple immune responses during cassava-Xam interaction and extensive transcriptional reprogramming.
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Affiliation(s)
- Yanli Chang
- Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, Haikou, Hainan province, 570228, China
| | - Yujing Bai
- Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, Haikou, Hainan province, 570228, China
| | - Yunxie Wei
- Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, Haikou, Hainan province, 570228, China
| | - Haitao Shi
- Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, Haikou, Hainan province, 570228, China
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29
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Bai Y, Guo J, Reiter RJ, Wei Y, Shi H. Melatonin synthesis enzymes interact with ascorbate peroxidase to protect against oxidative stress in cassava. JOURNAL OF EXPERIMENTAL BOTANY 2020; 71:5645-5655. [PMID: 32474586 DOI: 10.1093/jxb/eraa267] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2020] [Accepted: 05/22/2020] [Indexed: 06/11/2023]
Abstract
Melatonin is an important indole amine hormone in animals and plants. The enzymes that catalyse melatonin synthesis positively regulate plant stress responses through modulation of the accumulation of reactive oxygen species (ROS). However, the relationship between melatonin biosynthetic enzymes and ROS-scavenging enzymes has not been characterized. In this study, we demonstrate that two enzymes of the melatonin synthesis pathway in Manihot esculenta (MeTDC2 and MeASMT2) directly interact with ascorbate peroxidase (MeAPX2) in both in vitro and in vivo experiments. Notably, in the presence of MeTDC2 and MeASMT2, MeAPX2 showed significantly higher activity and antioxidant capacity than the purified MeAPX2 protein alone. These findings indicate that MeTDC2-MeAPX2 and MeASMT2-MeAPX2 interactions both activate APX activity and increase antioxidant capacity. In addition, the combination of MeTDC2, MeASMT2, and MeAPX2 conferred improved resistance to hydrogen peroxide in Escherichia coli. Moreover, this combination also positively regulates oxidative stress tolerance in cassava. Taken together, these findings not only reveal a direct interaction between MeTDC2, MeASMT2, and MeAPX2, but also highlight the importance of this interaction in regulating redox homoeostasis and stress tolerance in cassava.
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Affiliation(s)
- Yujing Bai
- Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, Haikou, Hainan province, China
| | - Jingru Guo
- Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, Haikou, Hainan province, China
| | - Russel J Reiter
- Department of Cellular and Structural Biology, UT Health San Antonio, San Antonio, TX, USA
| | - Yunxie Wei
- Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, Haikou, Hainan province, China
| | - Haitao Shi
- Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, College of Tropical Crops, Hainan University, Haikou, Hainan province, China
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Guerrero-Zurita F, Ramírez DA, Rinza J, Ninanya J, Blas R, Heider B. Potential Short-Term Memory Induction as a Promising Method for Increasing Drought Tolerance in Sweetpotato Crop Wild Relatives [ Ipomoea series Batatas (Choisy) D. F. Austin]. FRONTIERS IN PLANT SCIENCE 2020; 11:567507. [PMID: 33013990 PMCID: PMC7494806 DOI: 10.3389/fpls.2020.567507] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/29/2020] [Accepted: 08/12/2020] [Indexed: 06/11/2023]
Abstract
Crop wild relatives of sweetpotato [Ipomoea series Batatas (Choisy) D. F. Austin] are a group of species with potential for use in crop improvement programs seeking to breed for drought tolerance. Stress memory in this group could enhance these species' physiological response to drought, though no studies have yet been conducted in this area. In this pot experiment, drought tolerance, determined using secondary traits, was tested in 59 sweetpotato crop wild relative accessions using potential short-term memory induction. For this purpose, accessions were subjected to two treatments, i) non-priming: full irrigation (up to field capacity, 0.32 w/w) from transplanting to harvest and ii) priming: full irrigation from transplanting to flowering onset (FO) followed by a priming process from FO to harvest. The priming process consisted of three water restriction periods of increasing length (8, 11, and 14 days) followed each by a recovery period of 14 days with full irrigation. Potential stress memory induction was calculated for each accession based on ecophysiological indicators such as senescence, foliar area, leaf-minus-air temperature, and leaf 13C discrimination. Based on total biomass production, resilience and production capacity were calculated per accession to evaluate drought tolerance. Increase in foliar area, efficient leaf thermoregulation, improvement of leaf photosynthetic performance, and delayed senescence were identified in 23.7, 28.8, 50.8, and 81.4% of the total number of accessions, respectively. It was observed that under a severe drought scenario, a resilient response included more long-lived green leaf area while a productive response was related to optimized leaf thermoregulation and gas exchange. Our preliminary results suggest that I. triloba and I. trifida have the potential to improve sweetpotato resilience in dry environments and should be included in introgression breeding programs of this crop. Furthermore, I. splendor-sylvae, I. ramosissima, I. tiliacea, and wild I. batatas were the most productive species studied but given the genetic barriers to interspecific hybridization between these species and sweetpotato, we suggest that further genetic and metabolic studies be conducted on them. Finally, this study proposes a promising method for improving drought tolerance based on potential stress-memory induction, which is applicable both for wild species and crops.
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Affiliation(s)
| | - David A. Ramírez
- Latin American & Caribbean Regional Program, International Potato Center, Lima, Peru
| | - Javier Rinza
- Crop and Systems Science Division, International Potato Center, Lima, Peru
| | - Johan Ninanya
- Crop and Systems Science Division, International Potato Center, Lima, Peru
| | - Raúl Blas
- Crop Husbandry Department, Universidad Nacional Agraria La Molina, Lima, Peru
| | - Bettina Heider
- Genetics, Genomics and Crop Improvement Division, International Potato Center, Lima, Peru
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Yan Y, Liu W, Wei Y, Shi H. MeCIPK23 interacts with Whirly transcription factors to activate abscisic acid biosynthesis and regulate drought resistance in cassava. PLANT BIOTECHNOLOGY JOURNAL 2020; 18:1504-1506. [PMID: 31858710 PMCID: PMC7292532 DOI: 10.1111/pbi.13321] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2019] [Revised: 12/07/2019] [Accepted: 12/11/2019] [Indexed: 05/22/2023]
Affiliation(s)
- Yu Yan
- Hainan Key Laboratory for Sustainable Utilization of Tropical BioresourcesCollege of Tropical CropsHainan UniversityHaikouHainanChina
| | - Wen Liu
- Key Laboratory of Three Gorges Regional Plant Genetics & Germplasm Enhancement (CTGU)/Biotechnology Research CenterChina Three Gorges UniversityYichangHubeiChina
| | - Yunxie Wei
- Hainan Key Laboratory for Sustainable Utilization of Tropical BioresourcesCollege of Tropical CropsHainan UniversityHaikouHainanChina
| | - Haitao Shi
- Hainan Key Laboratory for Sustainable Utilization of Tropical BioresourcesCollege of Tropical CropsHainan UniversityHaikouHainanChina
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Silva-Díaz C, Ramírez DA, Rinza J, Ninanya J, Loayza H, Gómez R, Anglin NL, Eyzaguirre R, Quiroz R. Radiation Interception, Conversion and Partitioning Efficiency in Potato Landraces: How Far Are We from the Optimum? PLANTS 2020; 9:plants9060787. [PMID: 32585962 PMCID: PMC7356277 DOI: 10.3390/plants9060787] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/02/2020] [Revised: 06/05/2020] [Accepted: 06/10/2020] [Indexed: 02/07/2023]
Abstract
Crop efficiencies associated with intercepted radiation, conversion into biomass and allocation to edible organs are essential for yield improvement strategies that would enhance genetic properties to maximize carbon gain without increasing crop inputs. The production of 20 potato landraces—never studied before—was analyzed for radiation interception (εi), conversion (εc) and partitioning (εp) efficiencies. Additionally, other physiological traits related to senescence delay (normalized difference vegetation index (NDVI)slp), tuberization precocity (tu), photosynthetic performance and dry tuber yield per plant (TY) were also assessed. Vegetation reflectance was remotely acquired and the efficiencies estimated through a process-based model parameterized by a time-series of airborne imageries. The combination of εi and εc, closely associated with an early tuber maturity and a NDVIslp explained 39% of the variability grouping the most productive genotypes. TY was closely correlated to senescence delay (rPearson = 0.74), indicating the usefulness of remote sensing methods for potato yield diversity characterization. About 89% of TY was explained by the first three principal components, associated mainly to tu, εc and εi, respectively. When comparing potato with other major crops, its εp is very close to the theoretical maximum. These findings suggest that there is room for improving εi and εc to enhance potato production.
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Affiliation(s)
- Cecilia Silva-Díaz
- International Potato Center (CIP), Headquarters P.O. Box 1558, Lima 12, Peru; (C.S.-D.); (J.R.); (J.N.); (H.L.); (R.G.); (N.L.A.); (R.E.)
| | - David A. Ramírez
- International Potato Center (CIP), Headquarters P.O. Box 1558, Lima 12, Peru; (C.S.-D.); (J.R.); (J.N.); (H.L.); (R.G.); (N.L.A.); (R.E.)
- Water Resources Doctoral Program, Universidad Nacional Agraria La Molina (UNALM), Av. La Molina s/n, Lima 12, Peru
- Correspondence: ; Tel.: +51-993-913-578
| | - Javier Rinza
- International Potato Center (CIP), Headquarters P.O. Box 1558, Lima 12, Peru; (C.S.-D.); (J.R.); (J.N.); (H.L.); (R.G.); (N.L.A.); (R.E.)
| | - Johan Ninanya
- International Potato Center (CIP), Headquarters P.O. Box 1558, Lima 12, Peru; (C.S.-D.); (J.R.); (J.N.); (H.L.); (R.G.); (N.L.A.); (R.E.)
| | - Hildo Loayza
- International Potato Center (CIP), Headquarters P.O. Box 1558, Lima 12, Peru; (C.S.-D.); (J.R.); (J.N.); (H.L.); (R.G.); (N.L.A.); (R.E.)
| | - René Gómez
- International Potato Center (CIP), Headquarters P.O. Box 1558, Lima 12, Peru; (C.S.-D.); (J.R.); (J.N.); (H.L.); (R.G.); (N.L.A.); (R.E.)
| | - Noelle L. Anglin
- International Potato Center (CIP), Headquarters P.O. Box 1558, Lima 12, Peru; (C.S.-D.); (J.R.); (J.N.); (H.L.); (R.G.); (N.L.A.); (R.E.)
| | - Raúl Eyzaguirre
- International Potato Center (CIP), Headquarters P.O. Box 1558, Lima 12, Peru; (C.S.-D.); (J.R.); (J.N.); (H.L.); (R.G.); (N.L.A.); (R.E.)
| | - Roberto Quiroz
- CATIE—Centro Agronómico Tropical de Investigación y Enseñanza, Cartago Turrialba 30501, Costa Rica;
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Hoang NV, Park C, Kamran M, Lee JY. Gene Regulatory Network Guided Investigations and Engineering of Storage Root Development in Root Crops. FRONTIERS IN PLANT SCIENCE 2020; 11:762. [PMID: 32625220 PMCID: PMC7313660 DOI: 10.3389/fpls.2020.00762] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/10/2020] [Accepted: 05/13/2020] [Indexed: 05/23/2023]
Abstract
The plasticity of plant development relies on its ability to balance growth and stress resistance. To do this, plants have established highly coordinated gene regulatory networks (GRNs) of the transcription factors and signaling components involved in developmental processes and stress responses. In root crops, yields of storage roots are mainly determined by secondary growth driven by the vascular cambium. In relation to this, a dynamic yet intricate GRN should operate in the vascular cambium, in coordination with environmental changes. Despite the significance of root crops as food sources, GRNs wired to mediate secondary growth in the storage root have just begun to emerge, specifically with the study of the radish. Gene expression data available with regard to other important root crops are not detailed enough for us directly to infer underlying molecular mechanisms. Thus, in this review, we provide a general overview of the regulatory programs governing the development and functions of the vascular cambium in model systems, and the role of the vascular cambium on the growth and yield potential of the storage roots in root crops. We then undertake a reanalysis of recent gene expression data generated for major root crops and discuss common GRNs involved in the vascular cambium-driven secondary growth in storage roots using the wealth of information available in Arabidopsis. Finally, we propose future engineering schemes for improving root crop yields by modifying potential key nodes in GRNs.
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Affiliation(s)
- Nam V. Hoang
- School of Biological Sciences, Seoul National University, Seoul, South Korea
| | - Chulmin Park
- School of Biological Sciences, Seoul National University, Seoul, South Korea
| | - Muhammad Kamran
- School of Biological Sciences, Seoul National University, Seoul, South Korea
| | - Ji-Young Lee
- School of Biological Sciences, Seoul National University, Seoul, South Korea
- Plant Genomics and Breeding Institute, Seoul National University, Seoul, South Korea
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Obata T, Klemens PAW, Rosado-Souza L, Schlereth A, Gisel A, Stavolone L, Zierer W, Morales N, Mueller LA, Zeeman SC, Ludewig F, Stitt M, Sonnewald U, Neuhaus HE, Fernie AR. Metabolic profiles of six African cultivars of cassava (Manihot esculenta Crantz) highlight bottlenecks of root yield. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2020; 102:1202-1219. [PMID: 31950549 DOI: 10.1111/tpj.14693] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/16/2019] [Revised: 12/10/2019] [Accepted: 01/02/2020] [Indexed: 05/25/2023]
Abstract
Cassava is an important staple crop in sub-Saharan Africa, due to its high productivity even on nutrient poor soils. The metabolic characteristics underlying this high productivity are poorly understood including the mode of photosynthesis, reasons for the high rate of photosynthesis, the extent of source/sink limitation, the impact of environment, and the extent of variation between cultivars. Six commercial African cassava cultivars were grown in a greenhouse in Erlangen, Germany, and in the field in Ibadan, Nigeria. Source leaves, sink leaves, stems and storage roots were harvested during storage root bulking and analyzed for sugars, organic acids, amino acids, phosphorylated intermediates, minerals, starch, protein, activities of enzymes in central metabolism and yield traits. High ratios of RuBisCO:phosphoenolpyruvate carboxylase activity support a C3 mode of photosynthesis. The high rate of photosynthesis is likely to be attributed to high activities of enzymes in the Calvin-Benson cycle and pathways for sucrose and starch synthesis. Nevertheless, source limitation is indicated because root yield traits correlated with metabolic traits in leaves rather than in the stem or storage roots. This situation was especially so in greenhouse-grown plants, where irradiance will have been low. In the field, plants produced more storage roots. This was associated with higher AGPase activity and lower sucrose in the roots, indicating that feedforward loops enhanced sink capacity in the high light and low nitrogen environment in the field. Overall, these results indicated that carbon assimilation rate, the K battery, root starch synthesis, trehalose, and chlorogenic acid accumulation are potential target traits for genetic improvement.
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Affiliation(s)
- Toshihiro Obata
- Max-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany
- Department of Biochemistry and Center for Plant Science Innovation, University of Nebraska-Lincoln, 1901 Vine Street, Lincoln, 68588, NE, USA
| | - Patrick A W Klemens
- Plant Physiology, University of Kaiserslautern, Erwin-Schrödinger-Str, D-67653, Kaiserslautern, Germany
| | - Laise Rosado-Souza
- Max-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany
| | - Armin Schlereth
- Max-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany
| | - Andreas Gisel
- International Institute of Tropical Agriculture, Oyo Road, 200001, Ibadan, Nigeria
- Institute for Biomedical Technologies, CNR, Via Amendola 122D, 70125, Bari, Italy
| | - Livia Stavolone
- International Institute of Tropical Agriculture, Oyo Road, 200001, Ibadan, Nigeria
- Institute for Sustainable Plant Protection, CNR, Via Amendola 122D, 70125, Bari, Italy
| | - Wolfgang Zierer
- Department of Biochemistry, University of Erlangen-Nuremberg, Staudtstr. 5, 91058, Erlangen, Germany
| | - Nicolas Morales
- Boyce Thompson Institute, 533 Tower Road, Ithaca, NY, 14850, USA
| | - Lukas A Mueller
- Boyce Thompson Institute, 533 Tower Road, Ithaca, NY, 14850, USA
| | - Samuel C Zeeman
- Institute of Molecular Plant Biology, Department of Biology, ETH Zürich, Zürich, Switzerland
| | - Frank Ludewig
- Institute for Biomedical Technologies, CNR, Via Amendola 122D, 70125, Bari, Italy
| | - Mark Stitt
- Max-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany
| | - Uwe Sonnewald
- Department of Biochemistry, University of Erlangen-Nuremberg, Staudtstr. 5, 91058, Erlangen, Germany
| | - H Ekkehard Neuhaus
- Plant Physiology, University of Kaiserslautern, Erwin-Schrödinger-Str, D-67653, Kaiserslautern, Germany
| | - Alisdair R Fernie
- Max-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany
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35
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Omondi JO, Lazarovitch N, Rachmilevitch S, Kukew T, Yermiyahu U, Yasuor H. Potassium and storage root development: focusing on photosynthesis, metabolites and soluble carbohydrates in cassava. PHYSIOLOGIA PLANTARUM 2020; 169:169-178. [PMID: 31837027 DOI: 10.1111/ppl.13060] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2019] [Revised: 11/25/2019] [Accepted: 12/10/2019] [Indexed: 05/25/2023]
Abstract
The linkage between K and the development of storage roots in root crops is partially understood, hence this experiment determined some of the mechanisms involved in cassava. The effects of 10, 40, 70, 100, 150 and 200 mg K l-1 fertigation on photosynthetic attributes, soluble carbohydrates, starch, metabolites, growth and yield were studied in a greenhouse. Storage root yield, number of storage roots, stomatal conductance and net photosynthesis reached maximum at 150 mg K l-1 . However, soluble carbohydrates and starch in the leaves significantly declined with an increasing concentration of K solution, similarly to the trend of glycerol in the leaves. Conversely, malic acid, citric acid and propionic acid gradually increased reaching maximum at 150, 150 and 70 mg K l-1 respectively. Combined, these results suggest that sugars were transported from the leaves to a stronger sink - the bulking storage roots. This and the increase of intermediate metabolites of tricarboxylic acid cycle provided the energy required for the bulking process and the development of the storage roots. Although the measured parameters indirectly link K to storage root development, they nonetheless form a basis for studies on direct interactions.
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Affiliation(s)
- John Okoth Omondi
- French Associates Institute for Agriculture and Biotechnology of Drylands, Ben Gurion University of the Negev, Beersheba, Israel
| | - Naftali Lazarovitch
- French Associates Institute for Agriculture and Biotechnology of Drylands, Ben Gurion University of the Negev, Beersheba, Israel
| | - Shimon Rachmilevitch
- French Associates Institute for Agriculture and Biotechnology of Drylands, Ben Gurion University of the Negev, Beersheba, Israel
| | - Titaya Kukew
- National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, Khlong Luang, Thailand
| | - Uri Yermiyahu
- Gilat Research Centre, Agricultural Research Organization, Gilat, Israel
| | - Hagai Yasuor
- Gilat Research Centre, Agricultural Research Organization, Gilat, Israel
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Moreno-Cadena LP, Hoogenboom G, Fisher MJ, Ramirez-Villegas J, Prager SD, Becerra Lopez-Lavalle LA, Pypers P, Mejia de Tafur MS, Wallach D, Muñoz-Carpena R, Asseng S. Importance of genetic parameters and uncertainty of MANIHOT, a new mechanistic cassava simulation model. EUROPEAN JOURNAL OF AGRONOMY : THE JOURNAL OF THE EUROPEAN SOCIETY FOR AGRONOMY 2020; 115:126031. [PMID: 32336915 PMCID: PMC7161911 DOI: 10.1016/j.eja.2020.126031] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2019] [Revised: 02/20/2020] [Accepted: 02/21/2020] [Indexed: 05/27/2023]
Abstract
We identified the most sensitive genotype-specific parameters (GSPs) and their contribution to the uncertainty of the MANIHOT simulation model. We applied a global sensitivity and uncertainty analysis (GSUA) of the GSPs to the simulation outputs for the cassava development, growth, and yield in contrasting environments. We compared enhanced Sampling for Uniformity, a qualitative screening method new to crop simulation modeling, and Sobol, a quantitative, variance-based method. About 80% of the GSPs contributed to most of the variation in maximum leaf area index (LAI), yield, and aboveground biomass at harvest. Relative importance of the GSPs varied between warm and cool temperatures but did not differ between rainfed and no water limitation conditions. Interactions between GSPs explained 20% of the variance in simulated outputs. Overall, the most important GSPs were individual node weight, radiation use efficiency, and maximum individual leaf area. Base temperature for leaf development was more important for cool compared to warm temperatures. Parameter uncertainty had a substantial impact on model predictions in MANIHOT simulations, with the uncertainty 2-5 times larger for warm compared to cool temperatures. Identification of important GSPs provides an objective way to determine the processes of a simulation model that are critical versus those that have little relevance.
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Affiliation(s)
- Leidy Patricia Moreno-Cadena
- International Center for Tropical Agriculture, km 17 recta Cali–Palmira, 763537, Cali, Colombia
- Universidad Nacional UN–Palmira, Colombia
- Department of Agricultural and Biological Engineering, University of Florida, Frazier Rogers Hall, PO Box 110570, Gainesville, FL 32611-0570, USA
- International Institute of Tropical Agriculture, Ibadan, Nigeria
| | - Gerrit Hoogenboom
- Department of Agricultural and Biological Engineering, University of Florida, Frazier Rogers Hall, PO Box 110570, Gainesville, FL 32611-0570, USA
- Institute for Sustainable Food Systems, University of Florida, Gainesville, FL 326110-0570, USA
| | - Myles James Fisher
- International Center for Tropical Agriculture, km 17 recta Cali–Palmira, 763537, Cali, Colombia
| | - Julian Ramirez-Villegas
- International Center for Tropical Agriculture, km 17 recta Cali–Palmira, 763537, Cali, Colombia
- CGIAR Research Program on Climate Change, Agriculture and Food Security (CCAFS), c/o CIAT, Cali, Colombia
| | - Steven Dean Prager
- International Center for Tropical Agriculture, km 17 recta Cali–Palmira, 763537, Cali, Colombia
| | | | - Pieter Pypers
- International Institute of Tropical Agriculture, Ibadan, Nigeria
| | | | - Daniel Wallach
- INRA, UMR 1248 Agrosystèmes et développement territorial (AGIR), 31326 Castanet-Tolosan Cedex, France
| | - Rafael Muñoz-Carpena
- Department of Agricultural and Biological Engineering, University of Florida, Frazier Rogers Hall, PO Box 110570, Gainesville, FL 32611-0570, USA
| | - Senthold Asseng
- Department of Agricultural and Biological Engineering, University of Florida, Frazier Rogers Hall, PO Box 110570, Gainesville, FL 32611-0570, USA
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37
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De Souza AP, Wang Y, Orr DJ, Carmo-Silva E, Long SP. Photosynthesis across African cassava germplasm is limited by Rubisco and mesophyll conductance at steady state, but by stomatal conductance in fluctuating light. THE NEW PHYTOLOGIST 2020; 225:2498-2512. [PMID: 31446639 PMCID: PMC7065220 DOI: 10.1111/nph.16142] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/24/2019] [Accepted: 08/15/2019] [Indexed: 05/18/2023]
Abstract
Sub-Saharan Africa is projected to see a 55% increase in food demand by 2035, where cassava (Manihot esculenta) is the most widely planted crop and a major calorie source. Yet, cassava yield in this region has not increased significantly for 13 yr. Improvement of genetic yield potential, the basis of the first Green Revolution, could be realized by improving photosynthetic efficiency. First, the factors limiting photosynthesis and their genetic variability within extant germplasm must be understood. Biochemical and diffusive limitations to leaf photosynthetic CO2 uptake under steady state and fluctuating light in 13 farm-preferred and high-yielding African cultivars were analyzed. A cassava leaf metabolic model was developed to quantify the value of overcoming limitations to leaf photosynthesis. At steady state, in vivo Rubisco activity and mesophyll conductance accounted for 84% of the limitation. Under nonsteady-state conditions of shade to sun transition, stomatal conductance was the major limitation, resulting in an estimated 13% and 5% losses in CO2 uptake and water use efficiency, across a diurnal period. Triose phosphate utilization, although sufficient to support observed rates, would limit improvement in leaf photosynthesis to 33%, unless improved itself. The variation of carbon assimilation among cultivars was three times greater under nonsteady state compared to steady state, pinpointing important overlooked breeding targets for improved photosynthetic efficiency in cassava.
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Affiliation(s)
- Amanda P. De Souza
- Carl R Woese Institute for Genomic Biology, University of
Illinois at Urbana-Champaign, Urbana, IL 61801, USA
| | - Yu Wang
- Carl R Woese Institute for Genomic Biology, University of
Illinois at Urbana-Champaign, Urbana, IL 61801, USA
| | - Douglas J. Orr
- Lancaster Environment Centre, Lancaster University,
Lancaster, LA1 4YQ, UK
| | | | - Stephen P. Long
- Carl R Woese Institute for Genomic Biology, University of
Illinois at Urbana-Champaign, Urbana, IL 61801, USA
- Lancaster Environment Centre, Lancaster University,
Lancaster, LA1 4YQ, UK
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38
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Affiliation(s)
- David M Rosenthal
- Department of Environmental and Plant Biology, Ohio University, Athens, OH, 45701, USA
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39
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Rosado‐Souza L, David LC, Drapal M, Fraser PD, Hofmann J, Klemens PAW, Ludewig F, Neuhaus HE, Obata T, Perez‐Fons L, Schlereth A, Sonnewald U, Stitt M, Zeeman SC, Zierer W, Fernie AR. Cassava Metabolomics and Starch Quality. ACTA ACUST UNITED AC 2019; 4:e20102. [DOI: 10.1002/cppb.20102] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Affiliation(s)
| | - Laure C. David
- Plant Biochemistry, Institute of Molecular Plant Biology Zurich Switzerland
| | - Margit Drapal
- School of Biological SciencesRoyal Holloway University of London Egham United Kingdom
| | - Paul D. Fraser
- School of Biological SciencesRoyal Holloway University of London Egham United Kingdom
| | - Jörg Hofmann
- Department of BiochemistryUniversity of Erlangen‐Nuremberg Erlangen Germany
| | | | - Frank Ludewig
- Department of BiochemistryUniversity of Erlangen‐Nuremberg Erlangen Germany
| | | | - Toshihiro Obata
- Max Planck Institute of Molecular Plant Physiology Potsdam‐Golm Germany
- Department of Biochemistry and Center for Plant Science InnovationUniversity of Nebraska–Lincoln Lincoln Nebraska
| | - Laura Perez‐Fons
- School of Biological SciencesRoyal Holloway University of London Egham United Kingdom
| | - Armin Schlereth
- Max Planck Institute of Molecular Plant Physiology Potsdam‐Golm Germany
| | - Uwe Sonnewald
- Department of BiochemistryUniversity of Erlangen‐Nuremberg Erlangen Germany
| | - Mark Stitt
- Max Planck Institute of Molecular Plant Physiology Potsdam‐Golm Germany
| | - Samuel C. Zeeman
- Plant Biochemistry, Institute of Molecular Plant Biology Zurich Switzerland
| | - Wolfgang Zierer
- Department of BiochemistryUniversity of Erlangen‐Nuremberg Erlangen Germany
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40
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Mehdi R, Lamm CE, Bodampalli Anjanappa R, Müdsam C, Saeed M, Klima J, Kraner ME, Ludewig F, Knoblauch M, Gruissem W, Sonnewald U, Zierer W. Symplasmic phloem unloading and radial post-phloem transport via vascular rays in tuberous roots of Manihot esculenta. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:5559-5573. [PMID: 31232453 PMCID: PMC6812707 DOI: 10.1093/jxb/erz297] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2019] [Accepted: 06/15/2019] [Indexed: 05/04/2023]
Abstract
Cassava (Manihot esculenta) is one of the most important staple food crops worldwide. Its starchy tuberous roots supply over 800 million people with carbohydrates. Yet, surprisingly little is known about the processes involved in filling of those vital storage organs. A better understanding of cassava carbohydrate allocation and starch storage is key to improving storage root yield. Here, we studied cassava morphology and phloem sap flow from source to sink using transgenic pAtSUC2::GFP plants, the phloem tracers esculin and 5(6)-carboxyfluorescein diacetate, as well as several staining techniques. We show that cassava performs apoplasmic phloem loading in source leaves and symplasmic unloading into phloem parenchyma cells of tuberous roots. We demonstrate that vascular rays play an important role in radial transport from the phloem to xylem parenchyma cells in tuberous roots. Furthermore, enzymatic and proteomic measurements of storage root tissues confirmed high abundance and activity of enzymes involved in the sucrose synthase-mediated pathway and indicated that starch is stored most efficiently in the outer xylem layers of tuberous roots. Our findings form the basis for biotechnological approaches aimed at improved phloem loading and enhanced carbohydrate allocation and storage in order to increase tuberous root yield of cassava.
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Affiliation(s)
- Rabih Mehdi
- Biochemistry, Department of Biology, Friedrich-Alexander University Erlangen-Nuremberg, Erlangen, Germany
| | - Christian E Lamm
- Biochemistry, Department of Biology, Friedrich-Alexander University Erlangen-Nuremberg, Erlangen, Germany
| | | | - Christina Müdsam
- Biochemistry, Department of Biology, Friedrich-Alexander University Erlangen-Nuremberg, Erlangen, Germany
| | - Muhammad Saeed
- Biochemistry, Department of Biology, Friedrich-Alexander University Erlangen-Nuremberg, Erlangen, Germany
| | - Janine Klima
- Biochemistry, Department of Biology, Friedrich-Alexander University Erlangen-Nuremberg, Erlangen, Germany
| | - Max E Kraner
- Biochemistry, Department of Biology, Friedrich-Alexander University Erlangen-Nuremberg, Erlangen, Germany
| | - Frank Ludewig
- Biochemistry, Department of Biology, Friedrich-Alexander University Erlangen-Nuremberg, Erlangen, Germany
| | - Michael Knoblauch
- School of Biological Sciences, Washington State University, Pullman, WA, USA
| | - Wilhelm Gruissem
- Plant Biotechnology, Department of Biology, ETH Zurich, Zurich, Switzerland
- Advanced Plant Biotechnology Center, National Chung Hsing University, Taichung City, Taiwan
| | - Uwe Sonnewald
- Biochemistry, Department of Biology, Friedrich-Alexander University Erlangen-Nuremberg, Erlangen, Germany
| | - Wolfgang Zierer
- Biochemistry, Department of Biology, Friedrich-Alexander University Erlangen-Nuremberg, Erlangen, Germany
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An F, Chen T, Li QX, Qiao J, Zhang Z, Carvalho LJ, Li K, Chen S. Protein Cross-Interactions for Efficient Photosynthesis in the Cassava Cultivar SC205 Relative to Its Wild Species. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2019; 67:8746-8755. [PMID: 31322881 DOI: 10.1021/acs.jafc.9b00046] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
The underlying mechanisms of the higher photosynthetic efficiency of cultivated cassava relative to its wild species are poorly understood. In the present study, proteins in leaves and chloroplasts were analyzed to compare the differences among the cultivar SC205, its wild ancestor W14, and the related species Glaziovii. The functions of differential proteins are associated with 10 ontology groups including photosynthesis, carbohydrate and energy metabolism, as well as potential signal pathway. The protein-protein networks among 41 differential proteins showed that PGK1 is a hub protein and protein cross-interactions affected the differentiation of photosynthetic rate. Anatomy patterns and PEPC detection suggested that SC205 has more C4 photosynthesis characteristics than Glaziovii and W14. Finally, a mechanism model of the efficient photosynthesis was proposed based on the remarkable variations in photosynthetic parameters and protein functions in the domestic cultivars.
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Affiliation(s)
- Feifei An
- Tropical Crops Genetic Resources Institute , Chinese Academy of Tropical Agricultural Sciences/Key Laboratory of Ministry of Agriculture for Germplasm Resources Conservation and Utilization of Cassava , Danzhou 571737 , China
| | - Ting Chen
- College of Agronomy , Hainan University , Haikou 571101 , China
| | - Qing X Li
- Department of Molecular Biosciences and Bioengineering , University of Hawaii at Manoa , Honolulu , Hawaii 96822 , United States
| | - Jingjuan Qiao
- College of Agronomy , Hainan University , Haikou 571101 , China
| | - Zhenwen Zhang
- Tropical Crops Genetic Resources Institute , Chinese Academy of Tropical Agricultural Sciences/Key Laboratory of Ministry of Agriculture for Germplasm Resources Conservation and Utilization of Cassava , Danzhou 571737 , China
| | - Luiz Jcb Carvalho
- Genetic Resources and Biotechnology , Embrapa , Brasilia , 70770-917 Brazil
| | - Kaimian Li
- Tropical Crops Genetic Resources Institute , Chinese Academy of Tropical Agricultural Sciences/Key Laboratory of Ministry of Agriculture for Germplasm Resources Conservation and Utilization of Cassava , Danzhou 571737 , China
| | - Songbi Chen
- Tropical Crops Genetic Resources Institute , Chinese Academy of Tropical Agricultural Sciences/Key Laboratory of Ministry of Agriculture for Germplasm Resources Conservation and Utilization of Cassava , Danzhou 571737 , China
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42
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Extended Utilization of Constraint-Based Metabolic Model in a Long-Growing Crop. Processes (Basel) 2019. [DOI: 10.3390/pr7050259] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
The constraint-based rMeCBM-KU50 model of cassava storage root growth was analyzed to evaluate its sensitivity, with respect to reaction flux distribution and storage root growth rate, to changes in model inputted data and constraints, including sucrose uptake rate-related data—photosynthetic rate, total leaf area, total photosynthetic rate, storage root dry weight, and biomass function-related data. These mainly varied within ±90% of the model default values, although exceptions were made for the carbohydrate (−90% to 8%) and starch (−90% to 9%) contents. The results indicated that the predicted storage root growth rate was highly affected by specific sucrose uptake rates through the total photosynthetic rate and storage root dry weight variations; whereas the carbon flux distribution, direction and partitioning inclusive, was more sensitive to the variation in biomass content, particularly the carbohydrate content. This study showed that the specific sucrose uptake rate based on the total photosynthetic rate, storage root dry weight, and carbohydrate content were critical to the constraint-based metabolic modeling and deepened our understanding of the input–output relationship—specifically regarding the rMeCBM-KU50 model—providing a valuable platform for the modeling of plant metabolic systems, especially long-growing crops.
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Yan W, Wu X, Li Y, Liu G, Cui Z, Jiang T, Ma Q, Luo L, Zhang P. Cell Wall Invertase 3 Affects Cassava Productivity via Regulating Sugar Allocation From Source to Sink. FRONTIERS IN PLANT SCIENCE 2019; 10:541. [PMID: 31114601 PMCID: PMC6503109 DOI: 10.3389/fpls.2019.00541] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/29/2018] [Accepted: 04/09/2019] [Indexed: 05/28/2023]
Abstract
Storage roots are the main sink for photo-assimilate accumulation and reflect cassava yield and productivity. Regulation of sugar partitioning from leaves to storage roots has not been elucidated. Cell wall invertases are involved in the hydrolysis of sugar during phloem unloading of vascular plants to control plant development and sink strength but have rarely been studied in root crops like cassava. MeCWINV3 encodes a typical cell wall invertase in cassava and is mainly expressed in vascular bundles. The gene is highly expressed in leaves, especially mature leaves, in response to diurnal rhythm. When MeCWINV3 was overexpressed in cassava, sugar export from leaves to storage roots was largely inhibited and sucrose hydrolysis in leaves was accelerated, leading to increased transient starch accumulation by blocking starch degradation and reduced overall plant growth. The progress of leaf senescence was promoted in the MeCWINV3 over-expressed cassava plants with increased expression of senescence-related genes. Storage root development was also delayed because of dramatically reduced sugar allocation from leaves. As a result, the transcriptional expression of starch biosynthetic genes such as small subunit ADP-glucose pyrophosphorylase, granule-bound starch synthase I, and starch branching enzyme I was reduced in accordance with insufficient sugar supply in the storage roots of the transgenic plants. These results show that MeCWINV3 regulates sugar allocation from source to sink and maintains sugar balance in cassava, thus affecting yield of cassava storage roots.
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Affiliation(s)
- Wei Yan
- Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, Institute of Tropical Agriculture and Forestry, Hainan University, Haikou, China
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China
- Institute of Tropical and Subtropical Cash Crops, Yunnan Academy of Agricultural Sciences, Baoshan, China
| | - Xiaoyun Wu
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Yanan Li
- Institute of Tropical and Subtropical Cash Crops, Yunnan Academy of Agricultural Sciences, Baoshan, China
| | - Guanghua Liu
- Institute of Tropical and Subtropical Cash Crops, Yunnan Academy of Agricultural Sciences, Baoshan, China
| | - Zhanfei Cui
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Tailing Jiang
- Institute of Tropical and Subtropical Cash Crops, Yunnan Academy of Agricultural Sciences, Baoshan, China
| | - Qiuxiang Ma
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China
| | - Lijuan Luo
- Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresources, Institute of Tropical Agriculture and Forestry, Hainan University, Haikou, China
| | - Peng Zhang
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China
- University of Chinese Academy of Sciences, Beijing, China
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44
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Arrivault S, Alexandre Moraes T, Obata T, Medeiros DB, Fernie AR, Boulouis A, Ludwig M, Lunn JE, Borghi GL, Schlereth A, Guenther M, Stitt M. Metabolite profiles reveal interspecific variation in operation of the Calvin-Benson cycle in both C4 and C3 plants. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:1843-1858. [PMID: 30773587 PMCID: PMC6436152 DOI: 10.1093/jxb/erz051] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/02/2018] [Accepted: 01/29/2019] [Indexed: 05/18/2023]
Abstract
Low atmospheric CO2 in recent geological time led to the evolution of carbon-concentrating mechanisms (CCMs) such as C4 photosynthesis in >65 terrestrial plant lineages. We know little about the impact of low CO2 on the Calvin-Benson cycle (CBC) in C3 species that did not evolve CCMs, representing >90% of terrestrial plant species. Metabolite profiling provides a top-down strategy to investigate the operational balance in a pathway. We profiled CBC intermediates in a panel of C4 (Zea mays, Setaria viridis, Flaveria bidentis, and F. trinervia) and C3 species (Oryza sativa, Triticium aestivum, Arabidopsis thaliana, Nicotiana tabacum, and Manihot esculenta). Principal component analysis revealed differences between C4 and C3 species that were driven by many metabolites, including lower ribulose 1,5-bisphosphate in C4 species. Strikingly, there was also considerable variation between C3 species. This was partly due to different chlorophyll and protein contents, but mainly to differences in relative levels of metabolites. Correlation analysis indicated that one contributory factor was the balance between fructose-1,6-bisphosphatase, sedoheptulose-1,7-bisphosphatase, phosphoribulokinase, and Rubisco. Our results point to the CBC having experienced different evolutionary trajectories in C3 species since the ancestors of modern plant lineages diverged. They underline the need to understand CBC operation in a wide range of species.
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Affiliation(s)
- Stéphanie Arrivault
- Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg, Potsdam-Golm, Germany
| | | | - Toshihiro Obata
- Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg, Potsdam-Golm, Germany
- Present address: Department of Biochemistry, Center for Plant Science Innovation, University of Nebraska-Lincoln, 1901 Vine Str, Lincoln, NE 68588, USA
| | - David B Medeiros
- Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg, Potsdam-Golm, Germany
| | - Alisdair R Fernie
- Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg, Potsdam-Golm, Germany
| | - Alix Boulouis
- Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg, Potsdam-Golm, Germany
- Present address: Institut de Biologie Physico-Chimique, CNRS - Sorbonne Université, Paris, France
| | - Martha Ludwig
- School of Molecular Sciences, The University of Western Australia, Crawley WA, Australia
| | - John E Lunn
- Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg, Potsdam-Golm, Germany
| | - Gian Luca Borghi
- Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg, Potsdam-Golm, Germany
| | - Armin Schlereth
- Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg, Potsdam-Golm, Germany
| | - Manuela Guenther
- Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg, Potsdam-Golm, Germany
| | - Mark Stitt
- Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg, Potsdam-Golm, Germany
- Correspondence:
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45
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Liu H, Gao Y, Gao C, Liu S, Zhang J, Chen G, Zhang S, Wu F. Study of the physiological mechanism of delaying cucumber senescence by wheat intercropping pattern. JOURNAL OF PLANT PHYSIOLOGY 2019; 234-235:154-166. [PMID: 30818185 DOI: 10.1016/j.jplph.2019.02.003] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/23/2018] [Revised: 02/01/2019] [Accepted: 02/01/2019] [Indexed: 06/09/2023]
Abstract
This paper investigates the physiological mechanism of the effect of delaying cucumber senescence on protein levels under the experimental model of monoculture and wheat intercropping. We analyzed cucumber roots for differential protein expression, and protein types were identified by core technology of proteomics. 45 differential proteins were identified as being differentially expressed between monoculture and intercropping of wheat, which were involved in carbohydrate metabolism, antioxidant and stress response, growth and development regulation, biological information transfer, and nucleic acid biosynthesis. The results showed the rate of photosynthesis of cucumber was increased under wheat intercropping pattern due to three enzymes being up-regulated. The respiration of cucumber was reduced when five enzymes were down-regulated. The antioxidant and resistant capacity of cucumber was enhanced significantly under wheat intercropping pattern because two enzymes were down-regulated while the activity of four other antioxidant enzymes was up-regulated. Intercropping wheat could delay the senescence of cucumber leaves by increasing the expression of IPT gene, reducing the expression of PAO and ETR2 gene, and inhibiting the expression of Cu/Zn-SOD and GS1 gene in later stages. Two proteins related to growth and development in cucumber were up-regulated, and one was down-regulated, while two proteins related to nucleic acid biosynthesis and chaperonin showed obvious down-regulation under wheat intercropping. Therefore, the growth and development was improved and senescence of cucumber could be delayed. Under intercropping pattern, the fresh weight, chlorophyll content, photosynthetic rate, and peroxidase activity of cucumber plants were higher than those of cucumber monoculture groups. Thus, the senescence of cucumber could be delayed under wheat intercropping by regulating its physiological mechanisms, such as by improving photosynthesis, reducing respiratory consumption, slowing the cell apoptosis rate, and enhancing the antioxidant and resistant capacity significantly, etc.
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Affiliation(s)
- Huimin Liu
- School of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin, 150030, Heilongjiang, China
| | - Yue Gao
- School of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin, 150030, Heilongjiang, China
| | - Chunqi Gao
- School of Horticulture, Qingdao Agricultural University, Qingdao, 266109, Shandong, China
| | - Shouwei Liu
- School of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin, 150030, Heilongjiang, China
| | - Jiao Zhang
- School of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin, 150030, Heilongjiang, China
| | - Guoqiang Chen
- School of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin, 150030, Heilongjiang, China
| | - Sijia Zhang
- School of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin, 150030, Heilongjiang, China
| | - Fengzhi Wu
- School of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin, 150030, Heilongjiang, China.
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46
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Chiewchankaset P, Siriwat W, Suksangpanomrung M, Boonseng O, Meechai A, Tanticharoen M, Kalapanulak S, Saithong T. Understanding carbon utilization routes between high and low starch-producing cultivars of cassava through Flux Balance Analysis. Sci Rep 2019; 9:2964. [PMID: 30814632 PMCID: PMC6393550 DOI: 10.1038/s41598-019-39920-w] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2018] [Accepted: 02/05/2019] [Indexed: 12/15/2022] Open
Abstract
Analysis of metabolic flux was used for system level assessment of carbon partitioning in Kasetsart 50 (KU50) and Hanatee (HN) cassava cultivars to understand the metabolic routes for their distinct phenotypes. First, the constraint-based metabolic model of cassava storage roots, rMeCBM, was developed based on the carbon assimilation pathway of cassava. Following the subcellular compartmentalization and curation to ensure full network connectivity and reflect the complexity of eukaryotic cells, cultivar specific data on sucrose uptake and biomass synthesis were input, and rMeCBM model was used to simulate storage root growth in KU50 and HN. Results showed that rMeCBM-KU50 and rMeCBM-HN models well imitated the storage root growth. The flux-sum analysis revealed that both cultivars utilized different metabolic precursors to produce energy in plastid. More carbon flux was invested in the syntheses of carbohydrates and amino acids in KU50 than in HN. Also, KU50 utilized less flux for respiration and less energy to synthesize one gram of dry storage root. These results may disclose metabolic potential of KU50 underlying its higher storage root and starch yield over HN. Moreover, sensitivity analysis indicated the robustness of rMeCBM model. The knowledge gained might be useful for identifying engineering targets for cassava yield improvement.
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Affiliation(s)
- Porntip Chiewchankaset
- Division of Biotechnology, School of Bioresources and Technology, King Mongkut's University of Technology Thonburi (Bang Khun Thian), Bangkok, 10150, Thailand
| | - Wanatsanan Siriwat
- Systems Biology and Bioinformatics Research Group, Pilot Plant Development and Training Institute, King Mongkut's University of Technology Thonburi (Bang Khun Thian), Bangkok, 10150, Thailand
| | - Malinee Suksangpanomrung
- Plant Molecular Genetics and Biotechnology Laboratory, National Center for Genetic Engineering and Biotechnology, Thailand Science Park, Pathumthani, 12120, Thailand
| | - Opas Boonseng
- Rayong Field Crops Research Center, Department of Agriculture, Rayong, 21150, Thailand
| | - Asawin Meechai
- Systems Biology and Bioinformatics Research Group, Pilot Plant Development and Training Institute, King Mongkut's University of Technology Thonburi (Bang Khun Thian), Bangkok, 10150, Thailand
- Department of Chemical Engineering, Faculty of Engineering, King Mongkut's University of Technology Thonburi (Bang Mod), Bangkok, 10140, Thailand
| | - Morakot Tanticharoen
- School of Bioresources and Technology, King Mongkut's University of Technology Thonburi (Bang Khun Thian), Bangkok, 10150, Thailand
| | - Saowalak Kalapanulak
- Systems Biology and Bioinformatics Research Group, Pilot Plant Development and Training Institute, King Mongkut's University of Technology Thonburi (Bang Khun Thian), Bangkok, 10150, Thailand.
- Bioinformatics and Systems Biology Program, School of Bioresources and Technology, King Mongkut's University of Technology Thonburi (Bang Khun Thian), Bangkok, 10150, Thailand.
| | - Treenut Saithong
- Systems Biology and Bioinformatics Research Group, Pilot Plant Development and Training Institute, King Mongkut's University of Technology Thonburi (Bang Khun Thian), Bangkok, 10150, Thailand.
- Bioinformatics and Systems Biology Program, School of Bioresources and Technology, King Mongkut's University of Technology Thonburi (Bang Khun Thian), Bangkok, 10150, Thailand.
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47
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Ren T, Weraduwage SM, Sharkey TD. Prospects for enhancing leaf photosynthetic capacity by manipulating mesophyll cell morphology. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:1153-1165. [PMID: 30590670 DOI: 10.1093/jxb/ery448] [Citation(s) in RCA: 58] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2018] [Accepted: 12/25/2018] [Indexed: 06/09/2023]
Abstract
Leaves are beautifully specialized organs designed to maximize the use of light and CO2 for photosynthesis. Engineering leaf anatomy therefore holds great potential to enhance photosynthetic capacity. Here we review the effect of the dominant leaf anatomical traits on leaf photosynthesis and confirm that a high chloroplast surface area exposed to intercellular airspace per unit leaf area (Sc) is critical for efficient photosynthesis. The possibility of improving Sc through appropriately increasing mesophyll cell density is further analyzed. The potential influences of modifying mesophyll cell morphology on CO2 diffusion, light distribution within the leaf, and other physiological processes are also discussed. Some potential target genes regulating leaf mesophyll cell proliferation and expansion are explored. Indeed, more comprehensive research is needed to understand how manipulating mesophyll cell morphology through editing the potential target genes impacts leaf photosynthetic capacity and related physiological processes. This will pinpoint the targets for engineering leaf anatomy to maximize photosynthetic capacity.
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Affiliation(s)
- Tao Ren
- College of Resources and Environment, Huazhong Agricultural University, China
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, USA
| | - Sarathi M Weraduwage
- Department of Energy Plant Research Laboratory and Plant Resiience Institute, Michigan State University, East Lansing, USA
| | - Thomas D Sharkey
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, USA
- Department of Energy Plant Research Laboratory and Plant Resiience Institute, Michigan State University, East Lansing, USA
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48
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Basu U, Bajaj D, Sharma A, Malik N, Daware A, Narnoliya L, Thakro V, Upadhyaya HD, Kumar R, Tripathi S, Bharadwaj C, Tyagi AK, Parida SK. Genetic dissection of photosynthetic efficiency traits for enhancing seed yield in chickpea. PLANT, CELL & ENVIRONMENT 2019; 42:158-173. [PMID: 29676051 DOI: 10.1111/pce.13319] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2017] [Accepted: 04/03/2018] [Indexed: 06/08/2023]
Abstract
Understanding the genetic basis of photosynthetic efficiency (PE) contributing to enhanced seed yield per plant (SYP) is vital for genomics-assisted crop improvement of chickpea. The current study employed an integrated genomic strategy involving photosynthesis pathway gene-based association mapping, genome-wide association study, quantitative trait loci (QTL) mapping, and expression profiling. This identified 16 potential single nucleotide polymorphism loci linked to major QTLs underlying 16 candidate genes significantly associated with PE and SYP traits in chickpea. The allelic variants were tightly linked to positively interacting QTLs regulating both enhanced PE and SYP traits as exemplified by a chlorophyll A-B binding protein-coding gene. The leaf tissue-specific pronounced up-regulated expression of 16 associated genes in germplasm accessions and homozygous individuals of mapping population was evident. Such combinatorial genomic strategy coupled with gene haplotype-specific association and in silico protein-protein interaction study delineated natural alleles and superior haplotypes from a chlorophyll A-B binding (CAB) protein-coding gene and its interacting gene, Timing of CAB Expression 1 (TOC1), which appear to be most promising candidates in modulating chickpea PE and SYP traits. These functionally pertinent molecular signatures identified have efficacy to drive marker-assisted selection for developing PE-enriched cultivars with high seed yield in chickpea.
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Affiliation(s)
- Udita Basu
- National Institute of Plant Genome Research (NIPGR), Aruna Asaf Ali Marg, New Delhi, 110067, India
| | - Deepak Bajaj
- National Institute of Plant Genome Research (NIPGR), Aruna Asaf Ali Marg, New Delhi, 110067, India
| | - Akash Sharma
- National Institute of Plant Genome Research (NIPGR), Aruna Asaf Ali Marg, New Delhi, 110067, India
| | - Naveen Malik
- National Institute of Plant Genome Research (NIPGR), Aruna Asaf Ali Marg, New Delhi, 110067, India
| | - Anurag Daware
- National Institute of Plant Genome Research (NIPGR), Aruna Asaf Ali Marg, New Delhi, 110067, India
| | - Laxmi Narnoliya
- National Institute of Plant Genome Research (NIPGR), Aruna Asaf Ali Marg, New Delhi, 110067, India
| | - Virevol Thakro
- National Institute of Plant Genome Research (NIPGR), Aruna Asaf Ali Marg, New Delhi, 110067, India
| | - Hari D Upadhyaya
- International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, 502324, India
| | - Rajendra Kumar
- U.P. Council of Agricultural Research, Gomati Nagar, Lucknow, 226010, India
| | - Shailesh Tripathi
- Division of Genetics, Indian Agricultural Research Institute (IARI), New Delhi, 110012, India
| | - Chellapilla Bharadwaj
- Division of Genetics, Indian Agricultural Research Institute (IARI), New Delhi, 110012, India
| | - Akhilesh K Tyagi
- National Institute of Plant Genome Research (NIPGR), Aruna Asaf Ali Marg, New Delhi, 110067, India
| | - Swarup K Parida
- National Institute of Plant Genome Research (NIPGR), Aruna Asaf Ali Marg, New Delhi, 110067, India
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49
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Smith MR, Rao IM, Merchant A. Source-Sink Relationships in Crop Plants and Their Influence on Yield Development and Nutritional Quality. FRONTIERS IN PLANT SCIENCE 2018; 9:1889. [PMID: 30619435 PMCID: PMC6306447 DOI: 10.3389/fpls.2018.01889] [Citation(s) in RCA: 75] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2018] [Accepted: 12/06/2018] [Indexed: 05/02/2023]
Abstract
For seed crops, yield is the cumulative result of both source and sink strength for photoassimilates and nutrients over the course of seed development. Source strength for photoassimilates is dictated by both net photosynthetic rate and the rate of photoassimilate remobilisation from source tissues. This review focuses on the current understanding of how the source-sink relationship in crop plants influences rates of yield development and the resilience of yield and nutritional quality. We present the limitations of current approaches to accurately measure sink strength and emphasize differences in coordination between photosynthesis and yield under varying environmental conditions. We highlight the potential to exploit source-sink dynamics, in order to improve yields and emphasize the importance of resilience in yield and nutritional quality with implications for plant breeding strategies.
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Affiliation(s)
- Millicent R. Smith
- School of Life and Environmental Sciences, Faculty of Science, Sydney Institute of Agriculture, The University of Sydney, Sydney, NSW, Australia
| | | | - Andrew Merchant
- School of Life and Environmental Sciences, Faculty of Science, Sydney Institute of Agriculture, The University of Sydney, Sydney, NSW, Australia
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Sonnewald U, Fernie AR. Next-generation strategies for understanding and influencing source-sink relations in crop plants. CURRENT OPINION IN PLANT BIOLOGY 2018; 43:63-70. [PMID: 29428477 DOI: 10.1016/j.pbi.2018.01.004] [Citation(s) in RCA: 77] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2017] [Revised: 12/21/2017] [Accepted: 01/10/2018] [Indexed: 05/03/2023]
Abstract
Whether plants are source or sink limited, that is, whether carbon assimilation or rather assimilate usage is ultimately responsible for crop yield, has been the subject of intense debate over several decades. Here we provide a short review of this debate before focusing on the use of transgenic intervention as a means to influence yield by modifying either source or sink function (or both). Given the relatively low success rates of strategies targeting single genes we highlight the success of multi-target transformations. The emergence of whole plant models and the potential impact that these will have in aiding yield improvement strategies are then discussed. We end by providing our perspective for next generation strategies for improving crop plants by means of manipulating their source-sink relations.
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Affiliation(s)
- Uwe Sonnewald
- Division of Biochemistry, Department of Biology, University of Erlangen-Nürnberg, Staudtstr. 5, 91058 Erlangen, Germany.
| | - Alisdair R Fernie
- Max-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany
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