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Fiorentini VHR, Wairich A, Costa MMDC, Brunetto G, Grynberg P, Togawa RC, Melo GWBD, Dos Santos HP, Revers LF, Ricachenevsky FK. Copper excess transcriptional responses in roots of grapevine (Vitis sp.) rootstocks. JOURNAL OF HAZARDOUS MATERIALS 2024; 480:136301. [PMID: 39504770 DOI: 10.1016/j.jhazmat.2024.136301] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2024] [Revised: 10/03/2024] [Accepted: 10/24/2024] [Indexed: 11/08/2024]
Abstract
Copper (Cu) is an essential element for plants, participating in photosynthesis, oxidative metabolism and cell wall synthesis. However, excessive Cu may become toxic, as Cu participates in Fenton chemistry and cause oxidative stress. Grapevine (Vitis sp.) is an important perennial crop, used for in natura consumption as well as for wine and juice. Vineyards are susceptible to fungal diseases that are commonly controlled by using Cu-based fungicides, which can lead to Cu accumulation in the soil. Since grape production is based on grafting scions of consumed-friendly varieties onto rootstocks that can withstand soil-borne diseases and stresses, it is important to identify rootstock genotypes that are tolerant to Cu excess. In this work, we compared physiological and molecular responses of four Vitis sp. rootstock genotypes to Cu excess, namely IAC, IBCA, Paulsen and Isabel. While IAC, IBCA, Paulsen were similarly tolerant, Isabel was the most sensitive to Cu excess. IAC and IBCA showed higher Cu accumulation in shoots, suggesting distinct partitioning strategy. We identified core Cu excess-responsive genes in grapevine roots of all four genotypes, including a putative HMA vacuolar Cu transporter and Cu-binding proteins. Genes related to the homeostasis of other elements are altered, such as iron (Fe) and phosphorus (P), suggesting that Cu excess alters the ionome balance. IAC and IBCA had extensive changes in their laccase gene repertoire, suggesting that could be related to the distinct Cu partitioning. Moreover, genes associated specifically with Isabel could be related to the genotype Cu excess sensitivity. Our work provides a valuable dataset for understanding variation in Cu tolerance how roots respond transcriptionally to Cu stress, and provide candidate genes for engineering Cu tolerance in grapevines.
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Affiliation(s)
- Victor Hugo Rolla Fiorentini
- Graduate Program in Cell and Molecular Biology (PPGBCM), Center for Biotechnology, Universidade Federal do Rio Grande do Sul, Porto Alegre, RS, Brazil
| | - Andriele Wairich
- Laboratory of Plant Molecular Genetics, Embrapa Uva e Vinho, Bento Gonçalves, RS, Brazil; Department of Agronomy and Crop Physiology, Justus Liebig University Giessen, Germany
| | | | - Gustavo Brunetto
- Department of Soil, Federal University of Santa Maria, Santa Maria, RS, Brazil
| | | | | | | | | | - Luis Fernando Revers
- Laboratory of Plant Molecular Genetics, Embrapa Uva e Vinho, Bento Gonçalves, RS, Brazil.
| | - Felipe Klein Ricachenevsky
- Graduate Program in Cell and Molecular Biology (PPGBCM), Center for Biotechnology, Universidade Federal do Rio Grande do Sul, Porto Alegre, RS, Brazil; Botany Department, Institute of Biosciences, Federal University of Rio Grande do Sul, Porto Alegre, RS, Brazil.
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2
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Gautam K, Segura M, Alonso S, Pasadas R, García-Mina JM, Zamarreño AM, Martínez C, Jamilena M. Jasmonate-insensitive mutant jar1b prevents petal elongation and flower opening coupling with parthenocarpic fruit development in Cucurbita pepo. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2024; 214:108923. [PMID: 39002308 DOI: 10.1016/j.plaphy.2024.108923] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2024] [Accepted: 07/06/2024] [Indexed: 07/15/2024]
Abstract
Jasmonates are growth regulators that play a key role in flower development, fruit ripening, root growth, and plant defence. The study explores the coordination of floral organ maturation to ensure proper flower opening for pollination and fertilization. A new mutant (jar1b) was discovered, lacking petal elongation and flower opening but showing normal pistil and stamen development, leading to parthenocarpic fruit development. The mutation also enhanced the elongation of roots while reducing the formation of root hairs. BSA sequencing showed that jar1b is a missense mutation in the gene CpJAR1B, which encodes the enzyme that catalyzes the conjugation between JA and the amino acid isoleucine. The loss of function mutation in CpJAR1B produced a deficiency in biologically active (+) -7-iso-jasmonoyl-L-isoleucine (JA-Ile), which was not complemented by the paralogous gene CpJAR1A or any other redundant gene. Exogenous application of methyl jasmonate (MeJA) demonstrated that jar1b is partially insensitive to JA in both flowers and roots. Further experimentation involving the combination of JA-Ile deficient and ethylene-deficient, and ET insensitive mutations in double mutants revealed that CpJAR1B mediated ET action in female petal maturation and flower opening, but JA and ET have independent additive effects as negative regulators of the set and development of squash fruits. CpJAR1B also regulated the aperture of male flowers in an ethylene-independent manner. The root phenotype of jar1b and effects of external MeJA treatments indicated that CpJAR1B has a dual role in root development, inhibiting the elongation of primary and secondary roots, but promoting the formation of root hairs.
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Affiliation(s)
- Keshav Gautam
- Department of Biology and Geology. Agri-food Campus of International Excellence (CeiA3) and Research Center CIAIMBITAL, University of Almería, 04120, Almería, Spain
| | - María Segura
- Department of Biology and Geology. Agri-food Campus of International Excellence (CeiA3) and Research Center CIAIMBITAL, University of Almería, 04120, Almería, Spain
| | - Sonsoles Alonso
- Department of Biology and Geology. Agri-food Campus of International Excellence (CeiA3) and Research Center CIAIMBITAL, University of Almería, 04120, Almería, Spain
| | - Raúl Pasadas
- Department of Biology and Geology. Agri-food Campus of International Excellence (CeiA3) and Research Center CIAIMBITAL, University of Almería, 04120, Almería, Spain
| | - José M García-Mina
- Universidad de Navarra, Facultad de Ciencias, Departamento de Biología Ambiental, Grupo Química y Biología Agrícola, Irunlarrea 1, 31008, Pamplona, Spain
| | - Angel M Zamarreño
- Universidad de Navarra, Facultad de Ciencias, Departamento de Biología Ambiental, Grupo Química y Biología Agrícola, Irunlarrea 1, 31008, Pamplona, Spain
| | - Cecilia Martínez
- Department of Biology and Geology. Agri-food Campus of International Excellence (CeiA3) and Research Center CIAIMBITAL, University of Almería, 04120, Almería, Spain.
| | - Manuel Jamilena
- Department of Biology and Geology. Agri-food Campus of International Excellence (CeiA3) and Research Center CIAIMBITAL, University of Almería, 04120, Almería, Spain.
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3
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Yi R, Li Y, Shan X. OPDA/dn-OPDA actions: biosynthesis, metabolism, and signaling. PLANT CELL REPORTS 2024; 43:206. [PMID: 39093416 DOI: 10.1007/s00299-024-03286-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2024] [Accepted: 07/13/2024] [Indexed: 08/04/2024]
Abstract
Plants cannot move, so they have evolved sophisticated strategies that integrate the external environmental cues and internal signaling networks for adaptation to dynamic circumstances. Cis-(+)-12-oxo-phytodienoic acid (OPDA) and 2,3-dinor-OPDA (dn-OPDA), the cyclopentenone-containing oxylipins, ubiquitously occur in the green lineage to orchestrate a series of growth and developmental processes as well as various stress and defense responses. OPDA/dn-OPDA are precursors of jasmonate (JA) biosynthesis in vascular plants. Dn-OPDA and its isomer also serve as bioactive JAs perceived by the coronatine insensitive 1/jasmonate ZIM-domain (COI1/JAZ) co-receptor complex in bryophytes and lycophytes. In addition, OPDA/dn-OPDA display signaling activities independent of (+)-7-iso-jasmonoyl-L-isoleucine (JA-Ile) and COI1 in both vascular and non-vascular plants. In this review, we discuss recent advances in the biosynthesis, metabolism, and signaling of OPDA/dn-OPDA, and provide an overview of the evolution of OPDA/dn-OPDA actions to obtain a deeper understanding of the pervasive role of OPDA/dn-OPDA in the plant life cycle.
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Affiliation(s)
- Rong Yi
- College of Agronomy, Inner Mongolia Agricultural University, Hohhot, China.
| | - Yirou Li
- MOE Key Laboratory of Bioinformatics, Tsinghua-Peking Joint Center for Life Sciences, and School of Life Sciences, Tsinghua University, Beijing, China
| | - Xiaoyi Shan
- MOE Key Laboratory of Bioinformatics, Tsinghua-Peking Joint Center for Life Sciences, and School of Life Sciences, Tsinghua University, Beijing, China.
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Saito R, Morikawa M, Muto T, Saito S, Kaji T, Ueda M. SlCYP94B18 and SlCYP94B19 monooxygenases for the catabolic turnover of jasmonates in tomato leaves. PHYTOCHEMISTRY 2024; 223:114141. [PMID: 38750708 DOI: 10.1016/j.phytochem.2024.114141] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/26/2024] [Revised: 05/12/2024] [Accepted: 05/12/2024] [Indexed: 05/19/2024]
Abstract
(3R,7S)-Jasmonoyl-L-isoleucine (JA-Ile) is a plant hormone that regulates plant defense responses and other physiological functions. The mechanism of attenuation of JA-Ile signaling in the plant body is essential because prolonged JA-Ile signaling can be detrimental to plant survival. In Arabidopsis thaliana, the cytochrome P450 monooxygenases, CYP94B1/B3/C1, inactivate JA-Ile by converting it into 12-hydroxy-jasmonoyl-L-isoleucine (12-OH-JA-Ile), and CYP94C1 converts 12-OH-JA-Ile into 12-carboxy-jasmonoyl-L-isoleucine (12-COOH-JA-Ile). In the present study, we aimed to identify the cytochrome P450 monooxygenases involved in the catabolic pathway of JA-Ile in tomato leaves. Based on a gene expression screening of SlCYP94 subfamily monooxygenases using qPCR and the time-course of JA-Ile catabolism, we identified SlCYP94B18 and SlCYP94B19 expressed in tomato leaves as candidate monooxygenases catalyzing the two-step catabolism of JA-Ile. An in vitro enzymatic assay using a yeast expression system revealed that these enzymes efficiently converted JA-Ile to 12-OH-JA-Ile, and then to 12-COOH-JA-Ile. SlCYP94B18 and SlCYP94B19 also catalyzed the oxidative catabolism of several JA-amino acid conjugates (JA-AAs), JA-Leu and JA-Val, in tomatoes. These results suggest that SlCYP94B18 and SlCYP94B19 plays a role in the two-step oxidation of JA-AAs, suggesting their broad involvement in regulating jasmonate signaling in tomatoes. Our results contribute to a deeper understanding of jasmonate signaling in tomatoes and may help to improve tomato cultivation and quality.
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Affiliation(s)
- Rina Saito
- Graduate School of Life Sciences, Tohoku University, 6-3, Aramaki-Aza-Aoba, Aoba-ku, Sendai, 980-8578, Japan
| | - Mai Morikawa
- Graduate School of Science, Tohoku University, 6-3, Aramaki-Aza-Aoba, Aoba-ku, Sendai, 980-8578, Japan
| | - Toshiya Muto
- Graduate School of Life Sciences, Tohoku University, 6-3, Aramaki-Aza-Aoba, Aoba-ku, Sendai, 980-8578, Japan
| | - Sayaka Saito
- Graduate School of Life Sciences, Tohoku University, 6-3, Aramaki-Aza-Aoba, Aoba-ku, Sendai, 980-8578, Japan
| | - Takuya Kaji
- Graduate School of Science, Tohoku University, 6-3, Aramaki-Aza-Aoba, Aoba-ku, Sendai, 980-8578, Japan
| | - Minoru Ueda
- Graduate School of Life Sciences, Tohoku University, 6-3, Aramaki-Aza-Aoba, Aoba-ku, Sendai, 980-8578, Japan; Graduate School of Science, Tohoku University, 6-3, Aramaki-Aza-Aoba, Aoba-ku, Sendai, 980-8578, Japan.
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5
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Xu X, Wen T, Ren A, Li D, Dawood M, Wu J, Zhao G. Gossypium arboreum PPD2 facilitates root architecture development to increase plant resilience to salt stress. PHYSIOLOGIA PLANTARUM 2024; 176:e14473. [PMID: 39129661 DOI: 10.1111/ppl.14473] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2024] [Revised: 06/26/2024] [Accepted: 07/02/2024] [Indexed: 08/13/2024]
Abstract
The jasmonic acid (JA) signaling pathway plays an important role in plant responses to abiotic stresses. The PEAPOD (PPD) and jasmonate ZIM-domain (JAZ) protein in the JA signaling pathway belong to the same family, but their functions in regulating plant defense against salt stress remain to be elucidated. Here, Gossypium arboreum PPD2 was overexpressed in Arabidopsis thaliana and systematically silenced in cotton for exploring its function in regulating plant defense to salt stress. The GaPPD2-overexpressed Arabidopsis thaliana plants significantly increased the tolerance to salt stress compared to the wild type in both medium and soil, while the GaPPD2-silenced cotton plants showed higher sensitivity to salt stress than the control in pots. The antioxidant activities experiment showed that GaPPD2 may mitigate the accumulation of reactive oxygen species by promoting superoxide dismutase accumulation, consequently improving plant resilience to salt stress. Through the exogenous application of MeJA (methy jasmonate) and the protein degradation inhibitor MG132, it was found that GaPPD2 functions in plant defense against salt stress and is involved in the JA signaling pathway. The RNA-seq analysis of GaPPD2-overexpressed A. thaliana plants and receptor materials showed that the differentially expressed genes were mainly enriched in antioxidant activity, peroxidase activity, and plant hormone signaling pathways. qRT-PCR results demonstrated that GaPPD2 might positively regulate plant defense by inhibiting GH3.2/3.10/3.12 expression and activating JAZ7/8 expression. The findings highlight the potential of GaPPD2 as a JA signaling component gene for improving the cotton plant resistance to salt stress and provide insights into the mechanisms underlying plant responses to environmental stresses.
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Affiliation(s)
| | | | - Aiping Ren
- Zhengzhou Research Base, National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, School of Agricultural Sciences, Zhengzhou University, Zhengzhou, China
| | - Dongliang Li
- Beijing Lantron Seed Company Limited, Zhengzhou, China
| | - Muhammad Dawood
- Department of Environmental Sciences, Bahauddin Zakariya University, Multan, Pakistan
| | - Jiahe Wu
- Zhengzhou Research Base, National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, School of Agricultural Sciences, Zhengzhou University, Zhengzhou, China
- State Key Laboratory of Plant Genomics, Institute of Microbiology Research, Chinese Academy of Sciences, Beijing, China
| | - Ge Zhao
- Zhengzhou Research Base, National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, School of Agricultural Sciences, Zhengzhou University, Zhengzhou, China
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6
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Peng D, Pan S, Du X, Chen E, He J, Zhang Z. Central Roles of ZmNAC128 and ZmNAC130 in Nutrient Uptake and Storage during Maize Grain Filling. Genes (Basel) 2024; 15:663. [PMID: 38927600 PMCID: PMC11203180 DOI: 10.3390/genes15060663] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2024] [Revised: 05/14/2024] [Accepted: 05/17/2024] [Indexed: 06/28/2024] Open
Abstract
Grain filling is critical for determining yield and quality, raising the question of whether central coordinators exist to facilitate the uptake and storage of various substances from maternal to filial tissues. The duplicate NAC transcription factors ZmNAC128 and ZmNAC130 could potentially serve as central coordinators. By analyzing differentially expressed genes from zmnac128 zmnac130 mutants across different genetic backgrounds and growing years, we identified 243 highly and differentially expressed genes (hdEGs) as the core target genes. These 243 hdEGs were associated with storage metabolism and transporters. ZmNAC128 and ZmNAC130 play vital roles in storage metabolism, and this study revealed two additional starch metabolism-related genes, sugary enhancer1 and hexokinase1, as their direct targets. A key finding of this study was the inclusion of 17 transporter genes within the 243 hdEGs, with significant alterations in the levels of more than 10 elements/substances in mutant kernels. Among them, six out of the nine upregulated transporter genes were linked to the transport of heavy metals and metalloids (HMMs), which was consistent with the enrichment of cadmium, lead, and arsenic observed in mutant kernels. Interestingly, the levels of Mg and Zn, minerals important to biofortification efforts, were reduced in mutant kernels. In addition to their direct involvement in sugar transport, ZmNAC128 and ZmNAC130 also activate the expression of the endosperm-preferential nitrogen and phosphate transporters ZmNPF1.1 and ZmPHO1;2. This coordinated regulation limits the intake of HMMs, enhances biofortification, and facilitates the uptake and storage of essential nutrients.
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Affiliation(s)
- Di Peng
- School of Life Sciences, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230027, China; (D.P.); (S.P.); (X.D.); (E.C.)
| | - Shuxing Pan
- School of Life Sciences, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230027, China; (D.P.); (S.P.); (X.D.); (E.C.)
| | - Xin Du
- School of Life Sciences, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230027, China; (D.P.); (S.P.); (X.D.); (E.C.)
| | - Erwang Chen
- School of Life Sciences, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230027, China; (D.P.); (S.P.); (X.D.); (E.C.)
| | - Junjun He
- South Subtropical Crop Research Institute, Chinese Academy of Tropical Agricultural Science, Zhanjiang 524091, China;
| | - Zhiyong Zhang
- School of Life Sciences, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230027, China; (D.P.); (S.P.); (X.D.); (E.C.)
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7
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Gasperini D, Howe GA. Phytohormones in a universe of regulatory metabolites: lessons from jasmonate. PLANT PHYSIOLOGY 2024; 195:135-154. [PMID: 38290050 PMCID: PMC11060663 DOI: 10.1093/plphys/kiae045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/27/2023] [Revised: 01/05/2024] [Accepted: 01/05/2024] [Indexed: 02/01/2024]
Abstract
Small-molecule phytohormones exert control over plant growth, development, and stress responses by coordinating the patterns of gene expression within and between cells. Increasing evidence indicates that currently recognized plant hormones are part of a larger group of regulatory metabolites that have acquired signaling properties during the evolution of land plants. This rich assortment of chemical signals reflects the tremendous diversity of plant secondary metabolism, which offers evolutionary solutions to the daunting challenges of sessility and other unique aspects of plant biology. A major gap in our current understanding of plant regulatory metabolites is the lack of insight into the direct targets of these compounds. Here, we illustrate the blurred distinction between classical phytohormones and other bioactive metabolites by highlighting the major scientific advances that transformed the view of jasmonate from an interesting floral scent to a potent transcriptional regulator. Lessons from jasmonate research generally apply to other phytohormones and thus may help provide a broad understanding of regulatory metabolite-protein interactions. In providing a framework that links small-molecule diversity to transcriptional plasticity, we hope to stimulate future research to explore the evolution, functions, and mechanisms of perception of a broad range of plant regulatory metabolites.
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Affiliation(s)
- Debora Gasperini
- Department of Molecular Signal Processing, Leibniz Institute of Plant Biochemistry, Halle 06120, Germany
| | - Gregg A Howe
- Department of Energy-Plant Research Laboratory, Michigan State University, East Lansing, MI 48824, USA
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824, USA
- Plant Resilience Institute, Michigan State University, East Lansing, MI 42284, USA
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8
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Uddin S, Munir MZ, Larriba E, Pérez-Pérez JM, Gull S, Pervaiz T, Mahmood U, Mahmood Z, Sun Y, Li Y. Temporal profiling of physiological, histological, and transcriptomic dissection during auxin-induced adventitious root formation in tetraploid Robinia pseudoacacia micro-cuttings. PLANTA 2024; 259:66. [PMID: 38332379 DOI: 10.1007/s00425-024-04341-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2023] [Accepted: 01/10/2024] [Indexed: 02/10/2024]
Abstract
MAIN CONCLUSION Optimal levels of indole-3-butyric acid (IBA) applied at the stem base promote adventitious root (AR) initiation and primordia formation, thus promoting the rooting of leafy micro-cuttings of tetraploid Robinia pseudoacacia. Tetraploid Robinia pseudoacacia L. is a widely cultivated tree in most regions of China that has a hard-rooting capability, propagated by stem cuttings. This study utilizes histological, physiological, and transcriptomic approaches to explore how root primordia are induced after indole butyric acid (IBA) treatment of micro-cuttings. IBA application promoted cell divisions in some cells within the vasculature, showing subcellular features associated with adventitious root (AR) founder cells. The anatomical structure explicitly showed that AR initiated from the cambium layer and instigate the inducible development of AR primordia. Meanwhile, the hormone data showed that similar to that of indole-3-acetic acid, the contents of trans-zeatin and abscisic acid peaked at early stages of AR formation and increased gradually in primordia formation across the subsequent stages, suggesting their indispensable roles in AR induction. On the contrary, 24-epibrassinolide roughly maintained at extremely high levels during primordium initiation thoroughly, indicating its presence was involved in cell-specific reorganization during AR development. Furthermore, antioxidant activities transiently increased in the basal region of micro-cuttings and may serve as biochemical indicators for distinct rooting phases, potentially aiding in AR formation. Transcriptomic analysis during the early stages of root formation shows significant downregulation of the abscisic acid and jasmonate signaling pathways, while ethylene and cytokinin signaling seems upregulated. Network analysis of genes involved in carbon metabolism and photosynthesis indicates that the basal region of the micro-cuttings undergoes rapid reprogramming, which results in the breakdown of sugars into pyruvate. This pyruvate is then utilized to fuel the tricarboxylic acid cycle, thereby sustaining growth through aerobic respiration. Collectively, our findings provide a time-course morphophysiological dissection and also suggest the regulatory role of a conserved auxin module in AR development in these species.
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Affiliation(s)
- Saleem Uddin
- State Key Laboratory of Tree Genetics and Breeding, Engineering Technology Research Center of Black Locust of National Forestry and Grassland Administration, National Engineering Research Center of Tree Breeding and Ecological Restoration, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, People's Republic of China
- College of Horticulture and Landscape Architecture, Southwest University, Chongqing, 400716, China
| | - Muhammad Zeeshan Munir
- State Key Laboratory of Tree Genetics and Breeding, Engineering Technology Research Center of Black Locust of National Forestry and Grassland Administration, National Engineering Research Center of Tree Breeding and Ecological Restoration, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, People's Republic of China
- School of Environment and Energy, Shenzhen Graduate School, Peking University, Shenzhen, 518055, China
| | - Eduardo Larriba
- Instituto de Bioingeniería, Universidad Miguel Hernández de Elche, Alicante, Spain
| | | | - Sadia Gull
- Department of Horticulture, College of Horticulture and Plant Protection, Yangzhou University, Yangzhou, 225009, China
| | - Tariq Pervaiz
- Department of Botany and Plant Sciences, University of California Riverside, Riverside, CA, 22963, USA
| | - Umer Mahmood
- Department of Plant Breeding, Swedish University of Agricultural Sciences, Alnarp, Sweden
| | - Zahid Mahmood
- Crop Sciences Institute, National Agricultural Research Centre, Islamabad, 44000, Pakistan
| | - Yuhan Sun
- State Key Laboratory of Tree Genetics and Breeding, Engineering Technology Research Center of Black Locust of National Forestry and Grassland Administration, National Engineering Research Center of Tree Breeding and Ecological Restoration, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, People's Republic of China.
| | - Yun Li
- State Key Laboratory of Tree Genetics and Breeding, Engineering Technology Research Center of Black Locust of National Forestry and Grassland Administration, National Engineering Research Center of Tree Breeding and Ecological Restoration, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, People's Republic of China.
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9
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Wang X, Jia C, An L, Zeng J, Ren A, Han X, Wang Y, Wu S. Genome-wide identification and expression characterization of the GH3 gene family of tea plant (Camellia sinensis). BMC Genomics 2024; 25:120. [PMID: 38280985 PMCID: PMC10822178 DOI: 10.1186/s12864-024-10004-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2023] [Accepted: 01/10/2024] [Indexed: 01/29/2024] Open
Abstract
To comprehensively understand the characteristics of the GH3 gene family in tea plants (Camellia sinensis), we identified 17 CsGH3 genes and analyzed their physicochemical properties, phylogenetic relationships, gene structures, promoters, and expression patterns in different tissues. The study showed that the 17 CsGH3 genes are distributed on 9 chromosomes, and based on evolutionary analysis, the CsGH3 members were divided into three subgroups. Gene duplication analysis revealed that segmental duplications have a significant impact on the amplification of CsGH3 genes. In addition, we identified and classified cis-elements in the CsGH3 gene promoters and detected elements related to plant hormone responses and non-biotic stress responses. Through expression pattern analysis, we observed tissue-specific expression of CsGH3.3 and CsGH3.10 in flower buds and roots. Moreover, based on predictive analysis of upstream regulatory transcription factors of CsGH3, we identified the potential transcriptional regulatory role of gibberellin response factor CsDELLA in CsGH3.14 and CsGH3.15. In this study, we found that CsGH3 genes are involved in a wide range of activities, such as growth and development, stress response, and transcription. This is the first report on CsGH3 genes and their potential roles in tea plants. In conclusion, these results provide a theoretical basis for elucidating the role of GH3 genes in the development of perennial woody plants and offer new insights into the synergistic effects of multiple hormones on plant growth and development in tea plants.
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Affiliation(s)
- Xinge Wang
- School of Life Science and Agriculture, Qiannan Normal University for Nationalities, Duyun, Guizhou, 558000, China
| | - Chunyu Jia
- School of Life Science and Agriculture, Qiannan Normal University for Nationalities, Duyun, Guizhou, 558000, China
| | - Lishuang An
- School of Life Science and Agriculture, Qiannan Normal University for Nationalities, Duyun, Guizhou, 558000, China
| | - Jiangyan Zeng
- School of Life Science and Agriculture, Qiannan Normal University for Nationalities, Duyun, Guizhou, 558000, China
| | - Aixia Ren
- School of Life Science and Agriculture, Qiannan Normal University for Nationalities, Duyun, Guizhou, 558000, China
| | - Xin Han
- School of Life Science and Agriculture, Qiannan Normal University for Nationalities, Duyun, Guizhou, 558000, China
| | - Yiqing Wang
- Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Guizhou University, Guiyang, Guizhou, 550025, China.
| | - Shuang Wu
- Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Guizhou University, Guiyang, Guizhou, 550025, China.
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10
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Mik V, Pospíšil T, Brunoni F, Grúz J, Nožková V, Wasternack C, Miersch O, Strnad M, Floková K, Novák O, Široká J. Synthetic and analytical routes to the L-amino acid conjugates of cis-OPDA and their identification and quantification in plants. PHYTOCHEMISTRY 2023; 215:113855. [PMID: 37690699 DOI: 10.1016/j.phytochem.2023.113855] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2023] [Revised: 09/06/2023] [Accepted: 09/07/2023] [Indexed: 09/12/2023]
Abstract
Cis-(+)-12-oxophytodienoic acid (cis-(+)-OPDA) is a bioactive jasmonate, a precursor of jasmonic acid, which also displays signaling activity on its own. Modulation of cis-(+)-OPDA actions may be carried out via biotransformation leading to metabolites of various functions. This work introduces a methodology for the synthesis of racemic cis-OPDA conjugates with amino acids (OPDA-aa) and their deuterium-labeled analogs, which enables the unambiguous identification and accurate quantification of these compounds in plants. We have developed a highly sensitive liquid chromatography-tandem mass spectrometry-based method for the reliable determination of seven OPDA-aa (OPDA-Alanine, OPDA-Aspartate, OPDA-Glutamate, OPDA-Glycine, OPDA-Isoleucine, OPDA-Phenylalanine, and OPDA-Valine) from minute amount of plant material. The extraction from 10 mg of fresh plant tissue by 10% aqueous methanol followed by single-step sample clean-up on hydrophilic-lipophilic balanced columns prior to final analysis was optimized. The method was validated in terms of accuracy and precision, and the method parameters such as process efficiency, recovery and matrix effects were evaluated. In mechanically wounded 30-day-old Arabidopsis thaliana leaves, five endogenous (+)-OPDA-aa were identified and their endogenous levels were estimated. The time-course accumulation revealed a peak 60 min after the wounding, roughly corresponding to the accumulation of cis-(+)-OPDA. Our synthetic and analytical methodologies will support studies on cis-(+)-OPDA conjugation with amino acids and research into the biological significance of these metabolites in plants.
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Affiliation(s)
- Václav Mik
- Department of Experimental Biology, Faculty of Science, Palacký University in Olomouc, Šlechtitelů 27, Olomouc, 783 71, Czech Republic.
| | - Tomáš Pospíšil
- Department of Chemical Biology, Faculty of Science, Palacký University in Olomouc, Šlechtitelů 27, Olomouc, 783 71, Czech Republic.
| | - Federica Brunoni
- Laboratory of Growth Regulators, Palacký University in Olomouc & Institute of Experimental Botany AS CR, Šlechtitelů 27, Olomouc, 783 71, Czech Republic.
| | - Jiří Grúz
- Department of Experimental Biology, Faculty of Science, Palacký University in Olomouc, Šlechtitelů 27, Olomouc, 783 71, Czech Republic.
| | - Vladimíra Nožková
- Department of Chemical Biology, Faculty of Science, Palacký University in Olomouc, Šlechtitelů 27, Olomouc, 783 71, Czech Republic.
| | - Claus Wasternack
- Laboratory of Growth Regulators, Palacký University in Olomouc & Institute of Experimental Botany AS CR, Šlechtitelů 27, Olomouc, 783 71, Czech Republic.
| | - Otto Miersch
- Laboratory of Growth Regulators, Palacký University in Olomouc & Institute of Experimental Botany AS CR, Šlechtitelů 27, Olomouc, 783 71, Czech Republic.
| | - Miroslav Strnad
- Laboratory of Growth Regulators, Palacký University in Olomouc & Institute of Experimental Botany AS CR, Šlechtitelů 27, Olomouc, 783 71, Czech Republic.
| | - Kristýna Floková
- Laboratory of Growth Regulators, Palacký University in Olomouc & Institute of Experimental Botany AS CR, Šlechtitelů 27, Olomouc, 783 71, Czech Republic.
| | - Ondřej Novák
- Laboratory of Growth Regulators, Palacký University in Olomouc & Institute of Experimental Botany AS CR, Šlechtitelů 27, Olomouc, 783 71, Czech Republic.
| | - Jitka Široká
- Laboratory of Growth Regulators, Palacký University in Olomouc & Institute of Experimental Botany AS CR, Šlechtitelů 27, Olomouc, 783 71, Czech Republic.
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11
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Lacchini E, Venegas-Molina J, Goossens A. Structural and functional diversity in plant specialized metabolism signals and products: The case of oxylipins and triterpenes. CURRENT OPINION IN PLANT BIOLOGY 2023; 74:102371. [PMID: 37148672 DOI: 10.1016/j.pbi.2023.102371] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2022] [Revised: 04/03/2023] [Accepted: 04/03/2023] [Indexed: 05/08/2023]
Abstract
Metabolic enzymes tend to evolve towards catalytic efficacy, precision and speed. This seems particularly true for ancient and conserved enzymes involved in fundamental cellular processes that are present virtually in every cell and organism and converting and producing relatively limited metabolite numbers. Nevertheless, sessile organisms like plants have an astonishing repertoire of specific (specialized) metabolites that, by numbers and chemical complexity, by far exceed primary metabolites. Most theories agree that early gene duplication, subsequent positive selection and diversifying evolution have allowed relaxed selection of duplicated metabolic genes, thus facilitating the accumulation of mutations that could broaden substrate/product specificity and lower activation barriers and kinetics. Here, we use oxylipins, oxygenated fatty acids of plastidial origin to which the phytohormone jasmonate belongs, and triterpenes, a large group of specialized metabolites whose biosynthesis is often elicited by jasmonates, to showcase the structural and functional diversity of chemical signals and products in plant metabolism.
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Affiliation(s)
- Elia Lacchini
- Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052, Ghent, Belgium; VIB Center for Plant Systems Biology, B-9052, Ghent, Belgium
| | - Jhon Venegas-Molina
- Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052, Ghent, Belgium; VIB Center for Plant Systems Biology, B-9052, Ghent, Belgium
| | - Alain Goossens
- Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052, Ghent, Belgium; VIB Center for Plant Systems Biology, B-9052, Ghent, Belgium.
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12
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Huo Y, Yang H, Ding W, Huang T, Yuan Z, Zhu Z. Combined Transcriptome and Proteome Analysis Provides Insights into Petaloidy in Pomegranate. PLANTS (BASEL, SWITZERLAND) 2023; 12:2402. [PMID: 37446962 DOI: 10.3390/plants12132402] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/04/2023] [Revised: 06/20/2023] [Accepted: 06/20/2023] [Indexed: 07/15/2023]
Abstract
Petaloidy leads to a plump floral pattern and increases the landscape value of ornamental pomegranates; however, research on the mechanism of petaloidy in ornamental pomegranates is limited. In this study, we aimed to screen candidate genes related to petaloidy. We performed transcriptomic and proteomic sequencing of the stamens and petals of single-petal and double-petal flowers of ornamental pomegranates. Briefly, 24,567 genes and 5865 proteins were identified, of which 5721 genes were quantified at both transcriptional and translational levels. In the petal and stamen comparison groups, the association between differentially abundant proteins (DAPs) and differentially expressed genes (DEGs) was higher than that between all genes and all proteins, indicating that petaloidy impacts the correlation between genes and proteins. The enrichment results of transcriptome, proteome, and correlation analyses showed that cell wall metabolism, jasmonic acid signal transduction, redox balance, and transmembrane transport affected petaloidy. Nine hormone-related DEGs/DAPs were selected, among which ARF, ILR1, LAX2, and JAR1 may promote petal doubling. Sixteen transcription factor DEGs/DAPs were selected, among which EREBP, LOB, MEF2, MYB, C3H, and trihelix may promote petal doubling. Our results provide transcriptomic and proteomic data on the formation mechanism of petaloidy and a theoretical basis for breeding new ornamental pomegranate varieties.
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Affiliation(s)
- Yan Huo
- College of Landscape Architecture, Nanjing Forestry University, Nanjing 210037, China
- Southern Modern Forestry Collaborative Innovation Center, Nanjing Forestry University, Nanjing 210037, China
- Jinpu Research Institute, Nanjing Forestry University, Nanjing 210037, China
- Research Center for Digital Innovation Design, Nanjing Forestry University, Nanjing 210037, China
| | - Han Yang
- College of Traditional Chinese Medicine, Weifang Medical University, Weifang 261053, China
| | - Wenjie Ding
- College of Landscape Engineering, Suzhou Polytechnic Institute of Agriculture, Suzhou 215008, China
| | - Tao Huang
- College of Landscape Architecture, Nanjing Forestry University, Nanjing 210037, China
- Southern Modern Forestry Collaborative Innovation Center, Nanjing Forestry University, Nanjing 210037, China
- Jinpu Research Institute, Nanjing Forestry University, Nanjing 210037, China
- Research Center for Digital Innovation Design, Nanjing Forestry University, Nanjing 210037, China
| | - Zhaohe Yuan
- Southern Modern Forestry Collaborative Innovation Center, Nanjing Forestry University, Nanjing 210037, China
- College of Forestry, Nanjing Forestry University, Nanjing 210037, China
| | - Zunling Zhu
- College of Landscape Architecture, Nanjing Forestry University, Nanjing 210037, China
- Southern Modern Forestry Collaborative Innovation Center, Nanjing Forestry University, Nanjing 210037, China
- Jinpu Research Institute, Nanjing Forestry University, Nanjing 210037, China
- Research Center for Digital Innovation Design, Nanjing Forestry University, Nanjing 210037, China
- College of Art and Design, Nanjing Forestry University, Nanjing 210037, China
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13
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Brunoni F, Pěnčík A, Žukauskaitė A, Ament A, Kopečná M, Collani S, Kopečný D, Novák O. Amino acid conjugation of oxIAA is a secondary metabolic regulation involved in auxin homeostasis. THE NEW PHYTOLOGIST 2023; 238:2264-2270. [PMID: 36941219 DOI: 10.1111/nph.18887] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2022] [Accepted: 03/11/2023] [Indexed: 05/19/2023]
Affiliation(s)
- Federica Brunoni
- Laboratory of Growth Regulators, Institute of Experimental Botany of the Czech Academy of Sciences, Faculty of Science of Palacký University, Olomouc, CZ-78371, Czech Republic
| | - Aleš Pěnčík
- Laboratory of Growth Regulators, Institute of Experimental Botany of the Czech Academy of Sciences, Faculty of Science of Palacký University, Olomouc, CZ-78371, Czech Republic
| | - Asta Žukauskaitė
- Department of Chemical Biology, Faculty of Science, Palacký University, Olomouc, CZ-78371, Czech Republic
| | - Anita Ament
- Laboratory of Growth Regulators, Institute of Experimental Botany of the Czech Academy of Sciences, Faculty of Science of Palacký University, Olomouc, CZ-78371, Czech Republic
| | - Martina Kopečná
- Department of Experimental Biology, Faculty of Science, Palacký University, Olomouc, CZ-78371, Czech Republic
| | - Silvio Collani
- Department of Plant Physiology, Umeå Plant Science Centre, Umeå University, Umeå, SE-90736, Sweden
| | - David Kopečný
- Department of Experimental Biology, Faculty of Science, Palacký University, Olomouc, CZ-78371, Czech Republic
| | - Ondřej Novák
- Laboratory of Growth Regulators, Institute of Experimental Botany of the Czech Academy of Sciences, Faculty of Science of Palacký University, Olomouc, CZ-78371, Czech Republic
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14
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Chini A, Monte I, Zamarreño AM, García-Mina JM, Solano R. Evolution of the jasmonate ligands and their biosynthetic pathways. THE NEW PHYTOLOGIST 2023; 238:2236-2246. [PMID: 36942932 DOI: 10.1111/nph.18891] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/18/2023] [Accepted: 03/13/2023] [Indexed: 05/04/2023]
Abstract
Different plant species employ different jasmonates to activate a conserved signalling pathway in land plants, where (+)-7-iso-JA-Ile (JA-Ile) is the ligand for the COI1/JAZ receptor in angiosperms and dn-cis-OPDA, dn-iso-OPDA and Δ4 -dn-iso-OPDA act as ligands in Marchantia polymorpha. In addition, some jasmonates play a COI1-independent role. To understand the distribution of bioactive jasmonates in the green lineage and how their biosynthetic pathways evolved, we performed phylogenetic analyses and systematic jasmonates profiling in representative species from different lineages. We found that both OPDA and dn-OPDA are ubiquitous in all tested land plants and present also in charophyte algae, underscoring their importance as ancestral signalling molecules. By contrast, JA-Ile biosynthesis emerged within lycophytes coincident with the evolutionary appearance of JAR1 function. We identified that the OPR3-independent JA biosynthesis pathway is ancient and predates the evolutionary appearance of the OPR3-dependent pathway. Moreover, we identified a negative correlation between dn-iso-OPDA and JA-Ile in land plants, which supports that in bryophytes and lycophytes dn-iso-OPDA represents the analogous hormone to JA-Ile in other vascular plants.
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Affiliation(s)
- Andrea Chini
- Plant Molecular Genetics Department, Centro Nacional de Biotecnologia-CSIC (CNB-CSIC), 28049, Madrid, Spain
| | - Isabel Monte
- Plant Molecular Genetics Department, Centro Nacional de Biotecnologia-CSIC (CNB-CSIC), 28049, Madrid, Spain
| | - Angel M Zamarreño
- Department of Environmental Biology, Bioma Institute, University of Navarra, Navarra, 31008, Spain
| | - José M García-Mina
- Department of Environmental Biology, Bioma Institute, University of Navarra, Navarra, 31008, Spain
| | - Roberto Solano
- Plant Molecular Genetics Department, Centro Nacional de Biotecnologia-CSIC (CNB-CSIC), 28049, Madrid, Spain
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15
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Chen S, Zhong K, Li Y, Bai C, Xue Z, Wu Y. Evolutionary Analysis of the Melon ( Cucumis melo L.) GH3 Gene Family and Identification of GH3 Genes Related to Fruit Growth and Development. PLANTS (BASEL, SWITZERLAND) 2023; 12:1382. [PMID: 36987071 PMCID: PMC10053650 DOI: 10.3390/plants12061382] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/05/2023] [Revised: 03/06/2023] [Accepted: 03/18/2023] [Indexed: 06/19/2023]
Abstract
The indole-3-acetic acid (IAA) auxin is an important endogenous hormone that plays a key role in the regulation of plant growth and development. In recent years, with the progression of auxin-related research, the function of the Gretchen Hagen 3 (GH3) gene has become a prominent research topic. However, studies focusing on the characteristics and functions of melon GH3 family genes are still lacking. This study presents a systematic identification of melon GH3 gene family members based on genomic data. The evolution of melon GH3 family genes was systematically analyzed by means of bioinformatics, and the expression patterns of the GH3 family genes in different melon tissues during different fruit developmental stages and with various levels of 1-naphthaleneacetic acid (NAA) induction were analyzed with transcriptomics and RT-qPCR. The melon genome contains 10 GH3 genes distributed across seven chromosomes, and most of these genes are expressed in the plasma membrane. According to evolutionary analysis and the number of GH3 family genes, these genes can be divided into three subgroups, and they have been conserved throughout the evolution of melon. The melon GH3 gene has a wide range of expression patterns across distinct tissue types, with expression generally being higher in flowers and fruit. Through promoter analysis, we found that most cis-acting elements contained light- and IAA-responsive elements. Based on the RNA-seq and RT-qPCR analyses, it can be speculated that CmGH3-5, CmGH3-6 and CmGH3-7 may be involved in the process of melon fruit development. In conclusion, our findings suggest that the GH3 gene family plays an important role in the development of melon fruit. This study provides an important theoretical basis for further research on the function of the GH3 gene family and the molecular mechanism underlying the development of melon fruit.
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Affiliation(s)
- Sheng Chen
- Agricultural Bioresources Research Institute, Fujian Academy of Agricultural Sciences, Fuzhou 350003, China
| | - Kaiqin Zhong
- Fuzhou Institute of Vegetable Science, Fuzhou 350018, China
| | - Yongyu Li
- College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Changhui Bai
- Crops Research Institute, Fujian Academy of Agricultural Sciences, Fuzhou 350013, China
| | - Zhuzheng Xue
- Crops Research Institute, Fujian Academy of Agricultural Sciences, Fuzhou 350013, China
| | - Yufen Wu
- Agricultural Bioresources Research Institute, Fujian Academy of Agricultural Sciences, Fuzhou 350003, China
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16
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Lelarge-Trouverie C, Cohen M, Trémulot L, Van Breusegem F, Mhamdi A, Noctor G. Metabolite modification in oxidative stress responses: A case study of two defense hormones. Free Radic Biol Med 2023; 196:145-155. [PMID: 36634883 DOI: 10.1016/j.freeradbiomed.2023.01.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/25/2022] [Revised: 01/05/2023] [Accepted: 01/08/2023] [Indexed: 01/11/2023]
Abstract
Studies of the Arabidopsis cat2 mutant lacking the major leaf isoform of catalase have allowed the potential impact of intracellular H2O2 on plant function to be studied. Here, we report a robust analysis of modified gene expression associated with key families involved in metabolite modification in cat2. Through a combined transcriptomic and metabolomic analysis focused on the salicylic acid (SA) and jasmonic acid (JA) pathways, we report key features of the metabolic signatures linked to oxidative stress-induced signaling via these defence hormones and discuss the enzymes that are likely to be involved in determining these features. We provide evidence that specific UDP-glycosyl transferases contribute to the glucosylation of SA that accumulates as a result of oxidative stress in cat2. Glycosides of dihydroxybenzoic acids that accumulate alongside SA in cat2 are identified and, based on the expression of candidate genes, likely routes for their production are discussed. We also report that enhanced intracellular H2O2 triggers induction of genes encoding different enzymes that can metabolize JA. Integrated analysis of metabolite and transcript profiles suggests that a gene network involving specific hydrolases, hydroxylases, and sulfotransferases functions to limit accumulation of the most active jasmonates during oxidative stress.
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Affiliation(s)
- Caroline Lelarge-Trouverie
- Institut des Sciences des Plantes de Paris-Saclay, Unité Mixte de Recherche 8618 Centre National de la Recherche Scientifique, Université Paris-Saclay, 91405, Orsay cedex, France
| | - Mathias Cohen
- Institut des Sciences des Plantes de Paris-Saclay, Unité Mixte de Recherche 8618 Centre National de la Recherche Scientifique, Université Paris-Saclay, 91405, Orsay cedex, France
| | - Lug Trémulot
- Institut des Sciences des Plantes de Paris-Saclay, Unité Mixte de Recherche 8618 Centre National de la Recherche Scientifique, Université Paris-Saclay, 91405, Orsay cedex, France
| | - Frank Van Breusegem
- Department of Plant Biotechnology and Bioinformatics, VIB, 9052, Ghent, Belgium; VIB Center of Plant Systems Biology, 9052, Ghent, Belgium
| | - Amna Mhamdi
- Department of Plant Biotechnology and Bioinformatics, VIB, 9052, Ghent, Belgium; VIB Center of Plant Systems Biology, 9052, Ghent, Belgium
| | - Graham Noctor
- Institut des Sciences des Plantes de Paris-Saclay, Unité Mixte de Recherche 8618 Centre National de la Recherche Scientifique, Université Paris-Saclay, 91405, Orsay cedex, France; Institut Universitaire de France (IUF), France.
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17
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Integrated Transcriptome and Metabolome Analysis Reveals Phenylpropanoid Biosynthesis and Phytohormone Signaling Contribute to " Candidatus Liberibacter asiaticus" Accumulation in Citrus Fruit Piths (Fluffy Albedo). Int J Mol Sci 2022; 23:ijms232415648. [PMID: 36555287 PMCID: PMC9779719 DOI: 10.3390/ijms232415648] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2022] [Revised: 12/05/2022] [Accepted: 12/06/2022] [Indexed: 12/14/2022] Open
Abstract
"Candidatus Liberibacter asiaticus" (CLas) is a phloem-restricted α-proteobacterium that is associated with citrus huanglongbing (HLB), which is the most destructive disease that affects all varieties of citrus. Although midrib is usually used as a material for CLas detection, we recently found that the bacterium was enriched in fruits, especially in the fruit pith. However, no study has revealed the molecular basis of these two parts in responding to CLas infection. Therefore, we performed transcriptome and UHPLC-MS-based targeted and untargeted metabolomics analyses in order to organize the essential genes and metabolites that are involved. Transcriptome and metabolome characterized 4834 differentially expressed genes (DEGs) and 383 differentially accumulated metabolites (DAMs) between the two materials, wherein 179 DEGs and 44 DAMs were affected by HLB in both of the tissues, involving the pathways of phenylpropanoid biosynthesis, phytohormone signaling transduction, starch and sucrose metabolism, and photosynthesis. Notably, we discovered that the gene expression that is related to beta-glucosidase and endoglucanase was up-regulated in fruits. In addition, defense-related gene expression and metabolite accumulation were significantly down-regulated in infected fruits. Taken together, the decreased amount of jasmonic acid, coupled with the reduced accumulation of phenylpropanoid and the increased proliferation of indole-3-acetic acid, salicylic acid, and abscisic acid, compared to leaf midribs, may contribute largely to the enrichment of CLas in fruit piths, resulting in disorders of photosynthesis and starch and sucrose metabolism.
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18
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Bittner A, Cieśla A, Gruden K, Lukan T, Mahmud S, Teige M, Vothknecht UC, Wurzinger B. Organelles and phytohormones: a network of interactions in plant stress responses. JOURNAL OF EXPERIMENTAL BOTANY 2022; 73:7165-7181. [PMID: 36169618 PMCID: PMC9675595 DOI: 10.1093/jxb/erac384] [Citation(s) in RCA: 20] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2022] [Accepted: 09/26/2022] [Indexed: 06/08/2023]
Abstract
Phytohormones are major signaling components that contribute to nearly all aspects of plant life. They constitute an interconnected communication network to fine-tune growth and development in response to the ever-changing environment. To this end, they have to coordinate with other signaling components, such as reactive oxygen species and calcium signals. On the one hand, the two endosymbiotic organelles, plastids and mitochondria, control various aspects of phytohormone signaling and harbor important steps of hormone precursor biosynthesis. On the other hand, phytohormones have feedback actions on organellar functions. In addition, organelles and phytohormones often act in parallel in a coordinated matter to regulate cellular functions. Therefore, linking organelle functions with increasing knowledge of phytohormone biosynthesis, perception, and signaling will reveal new aspects of plant stress tolerance. In this review, we highlight recent work on organelle-phytohormone interactions focusing on the major stress-related hormones abscisic acid, jasmonates, salicylic acid, and ethylene.
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Mahmud S, Ullah C, Kortz A, Bhattacharyya S, Yu P, Gershenzon J, Vothknecht UC. Constitutive expression of JASMONATE RESISTANT 1 induces molecular changes that prime the plants to better withstand drought. PLANT, CELL & ENVIRONMENT 2022; 45:2906-2922. [PMID: 35864601 DOI: 10.1111/pce.14402] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2022] [Revised: 07/06/2022] [Accepted: 07/19/2022] [Indexed: 06/15/2023]
Abstract
In this study, we investigated Arabidopsis thaliana plants with altered levels of the enzyme JASMONATE RESISTANT 1 (JAR1), which converts jasmonic acid (JA) to jasmonoyl-l-isoleucine (JA-Ile). Analysis of a newly generated overexpression line (35S::JAR1) revealed that constitutively increased JA-Ile production in 35S::JAR1 alters plant development, resulting in stunted growth and delayed flowering. Under drought-stress conditions, 35S::JAR1 plants showed reduced wilting and recovered better from desiccation than the wild type. By contrast, jar1-11 plants with a strong reduction in JA-Ile content were hypersensitive to drought. RNA-sequencing analysis and hormonal profiling of plants under normal and drought conditions provided insights into the molecular reprogramming caused by the alteration in JA-Ile content. Especially 35S::JAR1 plants displayed changes in expression of developmental genes related to growth and flowering. Further transcriptional differences pertained to drought-related adaptive systems, including stomatal density and aperture, but also reactive oxygen species production and detoxification. Analysis of wild type and jar1-11 plants carrying the roGFP-Orp1 sensor support a role of JA-Ile in the alleviation of methyl viologen-induced H2 O2 production. Our data substantiate a role of JA-Ile in abiotic stress response and suggest that JAR1-mediated increase in JA-Ile content primes Arabidopsis towards improved drought stress tolerance.
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Affiliation(s)
- Sakil Mahmud
- Plant Cell Biology, Institute of Cellular and Moleculara Botany, University of Bonn, Bonn, Germany
- Department of Biochemistry and Molecular Biology, Bangladesh Agricultural University, Mymensingh, Bangladesh
| | - Chhana Ullah
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, Jena, Germany
| | - Annika Kortz
- Crop Functional Genomics, Institute of Crop Science and Resource Conservation, University of Bonn, Bonn, Germany
| | - Sabarna Bhattacharyya
- Plant Cell Biology, Institute of Cellular and Moleculara Botany, University of Bonn, Bonn, Germany
| | - Peng Yu
- Crop Functional Genomics, Institute of Crop Science and Resource Conservation, University of Bonn, Bonn, Germany
- Emmy Noether Group Root Functional Biology, Institute of Crop Science and Resource Conservation, University of Bonn, Bonn, Germany
| | - Jonathan Gershenzon
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, Jena, Germany
| | - Ute C Vothknecht
- Plant Cell Biology, Institute of Cellular and Moleculara Botany, University of Bonn, Bonn, Germany
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