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Drenning P, Volchko Y, Enell A, Berggren Kleja D, Larsson M, Norrman J. A method for evaluating the effects of gentle remediation options (GRO) on soil health: Demonstration at a DDX-contaminated tree nursery in Sweden. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 948:174869. [PMID: 39038670 DOI: 10.1016/j.scitotenv.2024.174869] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2024] [Revised: 07/16/2024] [Accepted: 07/16/2024] [Indexed: 07/24/2024]
Abstract
Healthy soils provide valuable ecosystem services (ES), but soil contamination can inhibit essential soil functions (SF) and pose risks to human health and the environment. A key advantage of using gentle remediation options (GRO) is the potential for multifunctionality: to both manage risks and improve soil functionality. In this study, an accessible, scientific method for soil health assessment directed towards practitioners and decision-makers in contaminated land management was developed and demonstrated for a field experiment at a DDX-contaminated tree nursery site in Sweden to evaluate the relative effects of GRO on soil health (i.e., the 'current capacity' to provide ES). For the set of relevant soil quality indicators (SQI) selected using a simplified logical sieve, GRO treatment was observed to have highly significant effects on many SQI according to statistical analysis due to the strong influence of biochar amendment on the sandy soil and positive effects of nitrogen-fixing leguminous plants. The SQI were grouped within five SF and the relative effects on soil health were evaluated compared to a reference state (experimental control) by calculating quantitative treated-SF indices. Multiple GRO treatments are shown to have statistically significant positive effects on many SF, including pollutant attenuation and degradation, water cycling and storage, nutrient cycling and provisioning, and soil structure and maintenance. The SF were in turn linked to soil-based ES to calculate treated-ES indices and an overall soil health index (SHI), which can provide simplified yet valuable information to decision-makers regarding the effectiveness of GRO. The experimental GRO treatment of the legume mix with biochar amendment and grass mix with biochar amendment are shown to result in statistically significant improvements to soil health, with overall SHI values of 141 % and 128 %, respectively, compared to the reference state of the grass mix without biochar (set to 100 %).
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Affiliation(s)
- Paul Drenning
- Department of Architecture and Civil Engineering, Chalmers University of Technology, SE 412-96 Gothenburg, Sweden.
| | - Yevheniya Volchko
- Department of Architecture and Civil Engineering, Chalmers University of Technology, SE 412-96 Gothenburg, Sweden
| | - Anja Enell
- Swedish Geotechnical Institute (SGI), SE-581 93 Linköping, Sweden
| | - Dan Berggren Kleja
- Swedish Geotechnical Institute (SGI), SE-581 93 Linköping, Sweden; Department of Soil and Environment, Swedish University of Agricultural Sciences (SLU), Box 7014, SE-750 07 Uppsala, Sweden
| | - Maria Larsson
- Man-Technology-Environment (MTM) Research Centre, School of Science and Technology, Örebro University, SE-701 82 Örebro, Sweden
| | - Jenny Norrman
- Department of Architecture and Civil Engineering, Chalmers University of Technology, SE 412-96 Gothenburg, Sweden
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Jauregi L, Epelde L, Artamendi M, Blanco F, Garbisu C. Induced development of oxytetracycline tolerance in bacterial communities from soil amended with well-aged cow manure. ECOTOXICOLOGY (LONDON, ENGLAND) 2023; 32:418-428. [PMID: 37029897 DOI: 10.1007/s10646-023-02650-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 03/29/2023] [Indexed: 05/22/2023]
Abstract
The use of animal manure as organic fertilizer is a common agricultural practice that can improve soil health and crop yield. However, antibiotics and their metabolites are often present in animal manure and, hence, in manure-amended soil. The aim of this study was to assess the induced development of oxytetracycline (OTC) tolerance in soil bacterial communities as a result of the addition of OTC to soil amended with well-aged cow manure. To this purpose, soil amended with well-aged cow manure was repeatedly - three times - spiked with different OTC concentrations (0, 2, 20, 60, 150, and 500 mg OTC kg-1 dry weight soil, each time) according to a pollution-induced community tolerance (PICT) assay. The PICT detection phase was conducted in Biolog EcoPlatesTM in the presence of the following OTC concentration gradient in the wells: 0, 5, 20, 40, 60, and 100 mg L-1. For all treatments, the application of OTC in the PICT selection phase resulted in lower values of bacterial metabolic activity (i.e., lower values of average well color development) in the PICT detection phase. A significant increase in OTC tolerance was observed in soil bacterial communities that had been exposed three times to ≥ 20 mg OTC kg-1 DW soil during the PICT selection phase. In general, higher levels of OTC exposure during the PICT selection phase resulted in bacterial tolerance to higher OTC concentrations during the PICT detection phase, pointing to a dose-dependent induced tolerance. It is important to (i) rationalize the amount of antibiotics administered to livestock, and (ii) treat properly the antibiotic-containing manure before its application to agricultural soil as fertilizer.
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Affiliation(s)
- Leire Jauregi
- NEIKER-Basque Institute of Agricultural Research and Development, Basque Research and Technology Alliance (BRTA), Parque Científico y Tecnológico de Bizkaia, P812, E-48160, Derio, Spain
| | - Lur Epelde
- NEIKER-Basque Institute of Agricultural Research and Development, Basque Research and Technology Alliance (BRTA), Parque Científico y Tecnológico de Bizkaia, P812, E-48160, Derio, Spain.
| | - Maddi Artamendi
- NEIKER-Basque Institute of Agricultural Research and Development, Basque Research and Technology Alliance (BRTA), Parque Científico y Tecnológico de Bizkaia, P812, E-48160, Derio, Spain
| | - Fernando Blanco
- NEIKER-Basque Institute of Agricultural Research and Development, Basque Research and Technology Alliance (BRTA), Parque Científico y Tecnológico de Bizkaia, P812, E-48160, Derio, Spain
| | - Carlos Garbisu
- NEIKER-Basque Institute of Agricultural Research and Development, Basque Research and Technology Alliance (BRTA), Parque Científico y Tecnológico de Bizkaia, P812, E-48160, Derio, Spain
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Impact of Paenarthrobacter ureafaciens ZF1 on the soil enzyme activity and microbial community during the bioremediation of atrazine-contaminated soils. BMC Microbiol 2022; 22:146. [PMID: 35610563 PMCID: PMC9128208 DOI: 10.1186/s12866-022-02556-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2022] [Accepted: 05/09/2022] [Indexed: 11/10/2022] Open
Abstract
Bioremediation of atrazine-contaminated soil is considered a safe and effective approach in removing contaminates from the soil. However, the effects of adding foreign organisms to assist bioremediation on soil environmental quality and ecosystem are unclear. Here, the ecological remediation potential of strain Paenarthrobacter ureafaciens ZF1 on atrazine-contaminated soil was investigated through miniature experiments using variations in soil enzymes and bacterial communities as indicators. The results showed that strain ZF1 accelerated atrazine degradation, which could completely degrade atrazine at concentrations of 100 mg·L− 1 atrazine within 2 h in liquid medium and could remove up to 99.3% of atrazine (100 mg·kg− 1 in soil) within 6 days. During soil bioremediation, atrazine promoted the activities of urease and cellulase, and inhibited the activities of sucrase and catalase, while the strain ZF1 significantly promoted the activities of these four enzymes. High-throughput sequencing of 16S rRNA genes showed that ZF1 affected the relative abundance and bacterial community structure, and promoted bacterial diversity and evenness. Furthermore, redundancy analysis revealed a certain correlation among the strain ZF1, atrazine residue, soil enzyme activity, and soil bacterial community. The strain ZF1 in this work demonstrated remarkable potential for ecological restoration, and can be an effective and environmentally friendly alternative in remediating atrazine-contaminated soil.
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Impacts of corn stover management and fertilizer application on soil nutrient availability and enzymatic activity. Sci Rep 2022; 12:1985. [PMID: 35132132 PMCID: PMC8821671 DOI: 10.1038/s41598-022-06042-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2021] [Accepted: 01/24/2022] [Indexed: 11/08/2022] Open
Abstract
Corn stover is a global resource used in many industrial sectors including bioenergy, fuel, and livestock operations. However, stover removal can negatively impact soil nutrient availability, especially nitrogen (N) and phosphorus (P), biological activity, and soil health. We evaluated the effects of corn stover management combined with N and P fertilization on soil quality, using soil chemical (nitrate, ammonium and Bray-1 P) and biological parameters (β-glucosidase, alkaline phosphatase, arylsulfatase activities and fluorescein diacetate hydrolysis—FDA). The experiment was performed on a Mollisol (Typic Endoaquoll) in a continuous corn system from 2013 to 2015 in Minnesota, USA. The treatments tested included six N rates (0 to 200 kg N ha−1), five P rates (0 to 100 kg P2O5 ha−1), and two residue management strategies (residue removed or incorporated) totalling 60 treatments. Corn stover management significantly impacted soil mineral-N forms and enzyme activity. In general, plots where residue was incorporated were found to have high NH4+ and enzyme activity compared to plots where residue was removed. In contrast, fields where residue was removed showed higher NO3− than plots where residue was incorporated. Residue management had little effect on soil available P. Soil enzyme activity was affected by both nutrient and residue management. In most cases, activity of the enzymes measured in plots where residue was removed frequently showed a positive response to added N and P. In contrast, soil enzyme responses to applied N and P in plots where residue was incorporated were less evident. Soil available nutrients tended to decrease in plots where residue was removed compared with plots where residue was incorporated. In conclusion, stover removal was found to have significant potential to change soil chemical and biological properties and caution should be taken when significant amounts of stover are removed from continuous corn fields. The residue removal could decrease different enzymes related to C-cycle (β-glucosidase) and soil microbial activity (FDA) over continuous cropping seasons, impairing soil health.
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Lu Z, Su H. Employing gene chip technology for monitoring and assessing soil heavy metal pollution. ENVIRONMENTAL MONITORING AND ASSESSMENT 2021; 194:2. [PMID: 34862584 DOI: 10.1007/s10661-021-09650-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/10/2021] [Accepted: 11/21/2021] [Indexed: 06/13/2023]
Abstract
Soil heavy metals pollution can cause many serious environment problems because of involving a very complex pollution process for soil health. Therefore, it is very important to explore methods that can effectively evaluate heavy metal pollution. Researchers were actively looking for new ideas and new methods for evaluating and predicting levels of soil heavy metal pollution. The study on microbial communities is one of the effective methods using gene chip technology. Gene chip technology, as a high-throughput metagenomics analysis technique, has been widely used for studying the structure and function of complex microbial communities in different polluted environments from different pollutants, including the soil polluted by heavy metals. However, there is still a lack of a systematic summarization for the polluted soil by heavy metals. This paper systematically analyzed soil heavy metals pollution via reviewing previous studies on applying gene chip technology, including single species, tolerance mechanisms, enrichment mechanisms, anticipation and evaluation of soil remediation, and multi-directional analysis. The latest gene chip technologies and corresponding application cases for discovering critical species and functional genes via analyzing microbial communities and evaluating heavy metal pollution of soil were also introduced in this paper. This article can provide scientific guidance for researchers actively investigating the soil polluted by heavy metals.
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Affiliation(s)
- ZiChun Lu
- College of Hehai, Chongqing University of Technology, Chongqing, 400717, China
| | - HaiFeng Su
- Key Laboratory of Degraded and Unused Land Consolidation Engineering, the Ministry of Natural and Resources, Xi'an, Shanxi, 710075, China.
- Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Science, Chongqing, 400714, China.
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Gieroń Ż, Sitko K, Zieleźnik-Rusinowska P, Szopiński M, Rojek-Jelonek M, Rostański A, Rudnicka M, Małkowski E. Ecophysiology of Arabidopsis arenosa, a new hyperaccumulator of Cd and Zn. JOURNAL OF HAZARDOUS MATERIALS 2021; 412:125052. [PMID: 33516105 DOI: 10.1016/j.jhazmat.2021.125052] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2020] [Revised: 11/24/2020] [Accepted: 01/04/2021] [Indexed: 06/12/2023]
Abstract
Arabidopsis arenosa is a pseudo-metallophyte, closely related to the model hyperaccumulator of Cd and Zn Arabidopsis halleri. A. arenosa occurs naturally in both diploid (2C) and tetraploid (4C) form, in contrast to A. halleri in which only diploid forms were found. Moreover, A. arenosa similarly to A. halleri often occupies heavy metal (HM) contaminated sites. Nevertheless, knowledge about the ecophysiology of this species is very limited. Therefore, we examined fourteen populations of A. arenosa of different ploidy from Central Europe in situ, focusing on photosynthetic efficiency, pigment content and ability to accumulate selected elements. The presented results indicate that several tetraploid populations exhibit the features of Cd and Zn hyperaccumulation. On the one hand, we noted differences in physiological parameters between the studied populations, on the other, harshness of the environment caused similar physiological response such as high HM pollution. All these features suggest that A. arenosa, especially as a new hyperaccumulator of Cd and Zn and autopolyploidyzation model, may be considered a very interesting research object, particularly when investigating the mechanisms of HMs accumulation and tolerance in plants.
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Affiliation(s)
- Żaneta Gieroń
- Plant Ecophysiology Team, University of Silesia in Katowice, Faculty of Natural Sciences, Institute of Biology, Biotechnology and Environmental Protection, Jagiellonska 28, 40-032 Katowice, Poland
| | - Krzysztof Sitko
- Plant Ecophysiology Team, University of Silesia in Katowice, Faculty of Natural Sciences, Institute of Biology, Biotechnology and Environmental Protection, Jagiellonska 28, 40-032 Katowice, Poland.
| | - Paulina Zieleźnik-Rusinowska
- Plant Ecophysiology Team, University of Silesia in Katowice, Faculty of Natural Sciences, Institute of Biology, Biotechnology and Environmental Protection, Jagiellonska 28, 40-032 Katowice, Poland
| | - Michał Szopiński
- Plant Ecophysiology Team, University of Silesia in Katowice, Faculty of Natural Sciences, Institute of Biology, Biotechnology and Environmental Protection, Jagiellonska 28, 40-032 Katowice, Poland
| | - Magdalena Rojek-Jelonek
- Plant Cytogenetics and Molecular Biology Group, University of Silesia in Katowice, Faculty of Natural Sciences, Institute of Biology, Biotechnology and Environmental Protection, Jagiellonska 28, 40-032 Katowice, Poland
| | - Adam Rostański
- Botany and Nature Protection Team, University of Silesia in Katowice, Faculty of Natural Sciences, Institute of Biology, Biotechnology and Environmental Protection, Jagiellonska 28, 40-032 Katowice, Poland
| | - Małgorzata Rudnicka
- Plant Ecophysiology Team, University of Silesia in Katowice, Faculty of Natural Sciences, Institute of Biology, Biotechnology and Environmental Protection, Jagiellonska 28, 40-032 Katowice, Poland
| | - Eugeniusz Małkowski
- Plant Ecophysiology Team, University of Silesia in Katowice, Faculty of Natural Sciences, Institute of Biology, Biotechnology and Environmental Protection, Jagiellonska 28, 40-032 Katowice, Poland
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Aparicio JD, Lacalle RG, Artetxe U, Urionabarrenetxea E, Becerril JM, Polti MA, Garbisu C, Soto M. Successful remediation of soils with mixed contamination of chromium and lindane: Integration of biological and physico-chemical strategies. ENVIRONMENTAL RESEARCH 2021; 194:110666. [PMID: 33359700 DOI: 10.1016/j.envres.2020.110666] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2020] [Revised: 12/01/2020] [Accepted: 12/21/2020] [Indexed: 06/12/2023]
Abstract
Soils contaminated by organic and inorganic pollutants like Cr(VI) and lindane, is currently a main environmental challenge. Biological strategies, such as biostimulation, bioaugmentation, phytoremediation and vermiremediation, and nanoremediation with nanoscale zero-valent iron (nZVI) are promising approaches for polluted soil health recovery. The combination of different remediation strategies might be key to address this problem. For this reason, a greenhouse experiment was performed using soil without or with an organic amendment. Both soils were contaminated with lindane (15 mg kg-1) and Cr(VI) (100 or 300 mg kg-1). After one month of aging, the following treatments were applied: (i) combination of bioaugmentation (actinobacteria), phytoremediation (Brassica napus), and vermiremediation (Eisenia fetida), or (ii) nanoremediation with nZVI, or (iii) combination of biological treatments and nanoremediation. After 60 days, the wellness of plants and earthworms was assessed, also, soil health was evaluated through physico-chemical parameters and biological indicators. Cr(VI) was more toxic and decreased soil health, however, it was reduced to Cr(III) by the amendment and nZVI and, to a lesser extent, by the biological treatment. Lindane was more effectively degraded through bioremediation. In non-polluted soils, nZVI had strong deleterious effects on soil biota when combined with the organic matter, but this effect was reverted in soils with a high concentration of Cr(VI). Therefore, under our experimental conditions bioremediation might be the best for soils with a moderate concentration of Cr(VI) and organic matter. The application of nZVI in soils with a high content of organic matter should be avoided except for soils with very high concentrations of Cr(VI). According to our study, among the treatments tested, the combination of an organic amendment, biological treatment, and nZVI was shown to be the strategy of choice in soils with high concentrations of Cr(VI) and lindane, while for moderate levels of chromium, the organic amendment plus biological treatment is the most profitable treatment.
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Affiliation(s)
- Juan Daniel Aparicio
- Planta Piloto de Procesos Industriales Microbiológicos (PROIMI), CONICET, Av. Belgrano y Pasaje Caseros, Tucumán, 4000, Argentina; Facultad de Bioquímica, Química y Farmacia, Universidad Nacional de Tucumán, Ayacucho 491, Tucumán, 4000, Argentina
| | - Rafael G Lacalle
- Department of Plant Biology and Ecology, Faculty of Science and Technology, University of the Basque Country (UPV/EHU), B° Sarriena S/n, Leioa, E-48940, Spain
| | - Unai Artetxe
- Department of Plant Biology and Ecology, Faculty of Science and Technology, University of the Basque Country (UPV/EHU), B° Sarriena S/n, Leioa, E-48940, Spain
| | - Erik Urionabarrenetxea
- Department of Zoology and Animal Cell Biology, Faculty of Science and Technology, University of the Basque Country (UPV/EHU), B° Sarriena S/n, Leioa, 48940, Spain; Department of Zoology and Animal Cell Biology, Research Centre for Experimental Marine Biology and Biotechnology, University of the Basque Country (UPV/EHU), Areatza Z-G, Plentzia, E-48620, Spain
| | - José María Becerril
- Department of Plant Biology and Ecology, Faculty of Science and Technology, University of the Basque Country (UPV/EHU), B° Sarriena S/n, Leioa, E-48940, Spain
| | - Marta Alejandra Polti
- Planta Piloto de Procesos Industriales Microbiológicos (PROIMI), CONICET, Av. Belgrano y Pasaje Caseros, Tucumán, 4000, Argentina; Facultad de Ciencias Naturales e Instituto Miguel Lillo, Universidad Nacional de Tucumán, Miguel Lillo 205, Tucumán, 4000, Argentina.
| | - Carlos Garbisu
- NEIKER, Department of Conservation of Natural Resources, C/Berreaga 1, Derio, E-48160, Spain
| | - Manuel Soto
- Department of Zoology and Animal Cell Biology, Faculty of Science and Technology, University of the Basque Country (UPV/EHU), B° Sarriena S/n, Leioa, 48940, Spain; Department of Zoology and Animal Cell Biology, Research Centre for Experimental Marine Biology and Biotechnology, University of the Basque Country (UPV/EHU), Areatza Z-G, Plentzia, E-48620, Spain
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Jauregi L, Epelde L, Alkorta I, Garbisu C. Antibiotic Resistance in Agricultural Soil and Crops Associated to the Application of Cow Manure-Derived Amendments From Conventional and Organic Livestock Farms. Front Vet Sci 2021; 8:633858. [PMID: 33708812 PMCID: PMC7940349 DOI: 10.3389/fvets.2021.633858] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2020] [Accepted: 02/03/2021] [Indexed: 11/28/2022] Open
Abstract
The application of organic amendments to agricultural soil can enhance crop yield, while improving the physicochemical and biological properties of the recipient soils. However, the use of manure-derived amendments as fertilizers entails environmental risks, such as the contamination of soil and crops with antibiotic residues, antibiotic resistance genes (ARGs) and mobile genetic elements (MGEs). In order to delve into these risks, we applied dairy cow manure-derived amendments (slurry, fresh manure, aged manure), obtained from a conventional and an organic farm, to soil. Subsequently, lettuce and wheat plants were grown in the amended soils. After harvest, the abundance of 95 ARGs and MGE-genes from the amended soils and plants were determined by high-throughput qPCR. The structure of soil prokaryotic communities was determined by 16S rRNA amplicon sequencing and qPCR. The absolute abundance of ARGs and MGE-genes differed between treatments (amended vs. unamended), origins of amendment (conventional vs. organic), and types of amendment (slurry vs. fresh manure vs. aged manure). Regarding ARG-absolute abundances in the amendments themselves, higher values were usually found in slurry vs. fresh or aged manure. These abundances were generally higher in soil than in plant samples, and higher in wheat grain than in lettuce plants. Lettuce plants fertilized with conventional amendments showed higher absolute abundances of tetracycline resistance genes, compared to those amended with organic amendments. No single treatment could be identified as the best or worst treatment regarding the risk of antibiotic resistance in soil and plant samples. Within the same treatment, the resistome risk differed between the amendment, the amended soil and, finally, the crop. In other words, according to our data, the resistome risk in manure-amended crops cannot be directly inferred from the analysis of the amendments themselves. We concluded that, depending on the specific question under study, the analysis of the resistome risk should specifically focus on the amendment, the amended soil or the crop.
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Affiliation(s)
- Leire Jauregi
- Department of Conservation of Natural Resources, NEIKER – Basque Institute for Agricultural Research and Development, Basque Research and Technology Alliance (BRTA), Derio, Spain
| | - Lur Epelde
- Department of Conservation of Natural Resources, NEIKER – Basque Institute for Agricultural Research and Development, Basque Research and Technology Alliance (BRTA), Derio, Spain
| | - Itziar Alkorta
- Department of Biochemistry and Molecular Biology, University of the Basque Country (UPV/EHU), Bilbao, Spain
| | - Carlos Garbisu
- Department of Conservation of Natural Resources, NEIKER – Basque Institute for Agricultural Research and Development, Basque Research and Technology Alliance (BRTA), Derio, Spain
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Compost and Sewage Sludge for the Improvement of Soil Chemical and Biological Quality of Mediterranean Agroecosystems. SUSTAINABILITY 2020. [DOI: 10.3390/su13010026] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Conventional fertilization practices in agroecosystems concern the supply of bioavailable nutrients, such as mineral fertilizers. A consolidated alternative to restoring the long-term fertility of agricultural soils is their amendment with organic fertilizers. Soil amendment with biowaste compost or sewage sludge represents a sustainable strategy to avoid the landfilling of organic matter derived from urban waste and sewage sludge. This study aims at validating the use of quality biowaste compost and sewage sludge from secondary sedimentation (alone or in combination with mineral fertilizers) in a Mediterranean agroecosystem and their effects on soil chemical and biological quality, with a view to verifying the maintenance of soil fertility and functionality. In particular, the dynamics of soil organic matter, pH, potentially toxic elements and microbial community functionality were assessed, in experimental mesocosms, during 6 months of incubation. The research showed that, while soil amendment with biowaste compost induces positive effects on soil organic matter and phosphorous concentrations, as well as on microbial community functionality, the amendment with the selected sewage sludge does not determine any benefit to the microbial community or any danger in relation to soil potentially toxic element concentrations and toxicity. The quantity of sewage sludge employed, chosen according to regional directives, was thus not enough to stimulate the edaphic microflora activity.
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Garbisu C, Alkorta I, Kidd P, Epelde L, Mench M. Keep and promote biodiversity at polluted sites under phytomanagement. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2020; 27:44820-44834. [PMID: 32975751 DOI: 10.1007/s11356-020-10854-5] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/03/2020] [Accepted: 09/13/2020] [Indexed: 06/11/2023]
Abstract
The phytomanagement concept combines a sustainable reduction of pollutant linkages at risk-assessed contaminated sites with the generation of both valuable biomass for the (bio)economy and ecosystem services. One of the potential benefits of phytomanagement is the possibility to increase biodiversity in polluted sites. However, the unique biodiversity present in some polluted sites can be severely impacted by the implementation of phytomanagement practices, even resulting in the local extinction of endemic ecotypes or species of great conservation value. Here, we highlight the importance of promoting measures to minimise the potential adverse impact of phytomanagement on biodiversity at polluted sites, as well as recommend practices to increase biodiversity at phytomanaged sites without compromising its effectiveness in terms of reduction of pollutant linkages and the generation of valuable biomass and ecosystem services.
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Affiliation(s)
- Carlos Garbisu
- Department of Conservation of Natural Resources, Soil Microbial Ecology Group, NEIKER-Basque Institute for Agricultural Research and Development, Basque Research and Technology Alliance (BRTA), Parque Científico y Tecnológico de Bizkaia P812, E-48160, Derio, Spain.
| | - Itziar Alkorta
- Department of Biochemistry and Molecular Biology, University of the Basque Country, P. O. Box 644, 48080, Bilbao, Spain
| | - Petra Kidd
- Consejo Superior de Investigaciones Científicas (CSIC), Instituto de Investigacións Agrobiolóxicas de Galicia (IIAG), 15780, Santiago de Compostela, Spain
| | - Lur Epelde
- Department of Conservation of Natural Resources, Soil Microbial Ecology Group, NEIKER-Basque Institute for Agricultural Research and Development, Basque Research and Technology Alliance (BRTA), Parque Científico y Tecnológico de Bizkaia P812, E-48160, Derio, Spain
| | - Michel Mench
- INRAE, BIOGECO, University of Bordeaux, F-33615, Pessac, France
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Komárková M, Chromý J, Pokorná E, Soudek P, Máchová P. Physiological and Transcriptomic Response of Grey Poplar ( Populus ×canescens Aiton Sm.) to Cadmium Stress. PLANTS (BASEL, SWITZERLAND) 2020; 9:E1485. [PMID: 33158073 PMCID: PMC7694188 DOI: 10.3390/plants9111485] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/17/2020] [Revised: 10/29/2020] [Accepted: 10/30/2020] [Indexed: 12/22/2022]
Abstract
(1) Background: Populus ×canescens (Aiton) Sm. is a fast-growing woody plant belonging to the family Salicaceae. Two poplar genotypes characterized by unique phenotypic traits (TP11 and TP20) were chosen to be characterized and tested for a physiological and transcriptomic response to Cd stress. (2) Methods: A comparative analysis of the effects of exposure to high cadmium (Cd) concentrations (10 µM and 100 µM) of TP11 and TP20 was performed. (3) Results: Neither of the tested Cd concentration negatively affected plant growth; however, the chlorophyll content significantly decreased. The potassium (K) content was higher in the shoots than in the roots. The magnesium concentrations were only slightly affected by Cd treatment. The zinc content in the shoots of TP20 was lower than that in the shoots of TP11. Cd accumulation was higher in the roots than in the shoots. After 10 days of exposure, 10 µM Cd resulted in comparable amounts of Cd in the roots and shoots of TP20. The most significant change in transcript amount was observed in endochitinase 2, 12-oxophytodienoate reductase 1 and phi classglutathione S-transferase. (4) Conclusions: Our study provided new insights for effective assessing the ability of different poplar genotypes to tolerate Cd stress and underlying Cd tolerance.
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Affiliation(s)
- Martina Komárková
- Forestry and Game Management Research Institute, Strnady, 25202 Jiloviste, Czech Republic; (J.C.); (E.P.); (P.M.)
| | - Jakub Chromý
- Forestry and Game Management Research Institute, Strnady, 25202 Jiloviste, Czech Republic; (J.C.); (E.P.); (P.M.)
| | - Eva Pokorná
- Forestry and Game Management Research Institute, Strnady, 25202 Jiloviste, Czech Republic; (J.C.); (E.P.); (P.M.)
| | - Petr Soudek
- The Czech Academy of Sciences, Institute of Experimental Botany, 16502 Prague, Czech Republic;
| | - Pavlína Máchová
- Forestry and Game Management Research Institute, Strnady, 25202 Jiloviste, Czech Republic; (J.C.); (E.P.); (P.M.)
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Xue K, Van Nostrand JD, Zhou J, Neu S, Müller I, Giagnoni L, Renella G. Phytomanagement Reduces Metal Availability and Microbial Metal Resistance in a Metal Contaminated Soil. Front Microbiol 2020; 11:1899. [PMID: 32849472 PMCID: PMC7426507 DOI: 10.3389/fmicb.2020.01899] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2020] [Accepted: 07/20/2020] [Indexed: 11/29/2022] Open
Abstract
Short rotation coppice (SRC) with metal tolerant plants may attenuate the pollution of excessive elements with potential toxicity in soils, while preserving soil resources and functionality. Here, we investigated effects of 6 years phytomanagement with willow SRC on properties including heavy metal levels, toxicity tested by BioTox, microbial biomass, enzyme activities, and functional gene abundances measured by GeoChip of soils contaminated by As, Cd, Pb and Zn, as compared to the same soils under non-managed mixed grassland representing no intervention treatment (Unt). Though metal total concentrations did not differ by SRC and Unt, SRC soils had lower metal availability and toxicity, higher organic carbon, microbial biomass, phosphatase, urease and protease activities, as compared to Unt soils. Significantly reduced abundances of genes encoding resistances to various metals and antibiotics were observed in SRC, likely attributed to reduced metal selective pressure based on less heavy metal availability and soil toxicity. SRC also significantly reduced abundances of genes involved in nitrogen, phosphorus, and sulfur cycles, possibly due to the willow induced selection. Overall, while the SRC phytomanagement did not reduce the total heavy metal concentrations in soils, it decreased the heavy metal availability and soil toxicity, which in turn led to less metal selective pressure on microbial communities. The SRC phytomanagement also reduced the abundances of nutrient cycling genes from microbial communities, possibly due to intense plant nutrient uptake that depleted soil nitrogen and phosphorus availability, and thus site-specific practices should be considered to improve the soil nutrient supply for phytomanagement plants.
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Affiliation(s)
- Kai Xue
- Key Laboratory of Environmental Biotechnology, Chinese Academy of Sciences (CAS), Beijing, China.,College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, China.,CAS Center for Excellence in Tibetan Plateau Earth Sciences, Chinese Academy of Sciences (CAS), Beijing, China
| | - Joy D Van Nostrand
- Institute for Environmental Genomics & Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK, United States
| | - Jizhong Zhou
- Institute for Environmental Genomics & Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK, United States
| | - Silke Neu
- Saxon State Office for Environment, Agriculture and Geology, Freiberg, Germany
| | - Ingo Müller
- Saxon State Office for Environment, Agriculture and Geology, Freiberg, Germany
| | - Laura Giagnoni
- Department of Agriculture, Food, Environment and Forestry, University of Florence, Florence, Italy
| | - Giancarlo Renella
- Department of Agronomy, Food, Natural Resources, Animals and Environment (DAFNAE), University of Padua, Padua, Italy
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Lacalle RG, Aparicio JD, Artetxe U, Urionabarrenetxea E, Polti MA, Soto M, Garbisu C, Becerril JM. Gentle remediation options for soil with mixed chromium (VI) and lindane pollution: biostimulation, bioaugmentation, phytoremediation and vermiremediation. Heliyon 2020; 6:e04550. [PMID: 32885063 PMCID: PMC7452571 DOI: 10.1016/j.heliyon.2020.e04550] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2020] [Revised: 07/10/2020] [Accepted: 07/23/2020] [Indexed: 12/15/2022] Open
Abstract
Gentle Remediation Options (GROs), such as biostimulation, bioaugmentation, phytoremediation and vermiremediation, are cost-effective and environmentally-friendly solutions for soils simultaneously polluted with organic and inorganic compounds. This study assessed the individual and combined effectiveness of GROs in recovering the health of a soil artificially polluted with hexavalent chromium [Cr(VI)] and lindane. A greenhouse experiment was performed using organically-amended vs. non-amended mixed polluted soils. All soils received the following treatments: (i) no treatment; (ii) bioaugmentation with an actinobacteria consortium; (iii) vermiremediation with Eisenia fetida; (iv) phytoremediation with Brassica napus; (v) bioaugmentation + vermiremediation; (vi) bioaugmentation + phytoremediation; and (vii) bioaugmentation + vermiremediation + phytoremediation. Soil health recovery was determined based on Cr(VI) and lindane concentrations, microbial properties and toxicity bioassays with plants and worms. Cr(VI) pollution caused high toxicity, but some GROs were able to partly recover soil health: (i) the organic amendment decreased Cr(VI) concentrations, alleviating toxicity; (ii) the actinobacteria consortium was effective at removing both Cr(VI) and lindane; (iii) B. napus and E. fetida had a positive effect on the removal of pollutants and improved microbial properties. The combination of the organic amendment, B. napus, E. fetida and the actinobacteria consortium was the most effective strategy.
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Affiliation(s)
- Rafael G. Lacalle
- Department of Plant Biology and Ecology, Faculty of Science and Technology, University of the Basque Country (UPV/EHU), Bº Sarriena s/n, E-48940, Leioa, Spain
- Corresponding author.
| | - Juan D. Aparicio
- Planta Piloto de Procesos Industriales Microbiológicos (PROIMI), CONICET, Av. Belgrano y Pasaje Caseros, 4000, Tucumán, Argentina
- Facultad de Bioquímica, Química y Farmacia, Universidad Nacional de Tucumán, Ayacucho, 491. 4000, Tucumán, Argentina
| | - Unai Artetxe
- Department of Plant Biology and Ecology, Faculty of Science and Technology, University of the Basque Country (UPV/EHU), Bº Sarriena s/n, E-48940, Leioa, Spain
| | - Erik Urionabarrenetxea
- Department of Zoology and Animal Cell Biology, Faculty of Science and Technology, University of the Basque Country (UPV/EHU), Bº Sarriena s/n, 48940, Leioa, Spain
- Department of Zoology and Animal Cell Biology, Research Centre for Experimental Marine Biology and Biotechnology, University of the Basque Country (UPV/EHU), Areatza Z-G, E-48620, Plentzia, Spain
| | - Marta A. Polti
- Facultad de Bioquímica, Química y Farmacia, Universidad Nacional de Tucumán, Ayacucho, 491. 4000, Tucumán, Argentina
- Facultad de Ciencias Naturales e Instituto Miguel Lillo, Universidad Nacional de Tucumán, Miguel Lillo 205, 4000, Tucumán, Argentina
| | - Manuel Soto
- Department of Zoology and Animal Cell Biology, Faculty of Science and Technology, University of the Basque Country (UPV/EHU), Bº Sarriena s/n, 48940, Leioa, Spain
- Department of Zoology and Animal Cell Biology, Research Centre for Experimental Marine Biology and Biotechnology, University of the Basque Country (UPV/EHU), Areatza Z-G, E-48620, Plentzia, Spain
| | - Carlos Garbisu
- NEIKER, Department of Conservation of Natural Resources, c/Berreaga 1, E-48160, Derio, Spain
| | - José M. Becerril
- Department of Plant Biology and Ecology, Faculty of Science and Technology, University of the Basque Country (UPV/EHU), Bº Sarriena s/n, E-48940, Leioa, Spain
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Zhao H, Yu L, Yu M, Afzal M, Dai Z, Brookes P, Xu J. Nitrogen combined with biochar changed the feedback mechanism between soil nitrification and Cd availability in an acidic soil. JOURNAL OF HAZARDOUS MATERIALS 2020; 390:121631. [PMID: 31776087 DOI: 10.1016/j.jhazmat.2019.121631] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2019] [Revised: 10/21/2019] [Accepted: 11/05/2019] [Indexed: 06/10/2023]
Abstract
Inorganic nitrogen (N) inputs increase soil nitrification, acidification and trace metal toxicity e.g. cadmium (Cd). Biochar (B) has been widely used for metal immobilization. However, little is known about how the combination of N fertilizers with biochar (N-B) changes soil Cd availability through altering nitrification process. Here, (NH4)2SO4 or CO(NH2)2 was applied in combination with biochar to an acidic, artificially enriched Cd contaminated soil. Not as we expected, available Cd did not increase following (NH4)2SO4 or CO(NH2)2 addition. Nitrification and acidification of Cd contaminated soils were greatly inhibited, accompanied by elimination of ammonia-oxidizing bacteria (AOB). Exchangeable H+ of Cd contaminated soils was significantly lower than that of uncontaminated soils, thus inhibiting Cd itself from mobilization. N-B addition nearly halved soil available Cd and significantly increased nitrification by promoting AOB recovery. However, the restored nitrification did not cause soil acidification, due to the high buffering and slow liming effects of biochar. Available Cd continuously decreased with decreasing soil acidity and exchangeable Al. This study firstly demonstrated a feedback between soil nitrification and Cd after N application, and how biochar modified the feedback. Biochar, therefore, provides a feasible strategy for eliminating potential Cd toxicity on both soil biological and chemical processes.
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Affiliation(s)
- Haochun Zhao
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, 866 Yuhangtang Road, Hangzhou, 310058, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Zhejiang University, 866 Yuhangtang Road, Hangzhou, 310058, China
| | - Lu Yu
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, 866 Yuhangtang Road, Hangzhou, 310058, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Zhejiang University, 866 Yuhangtang Road, Hangzhou, 310058, China
| | - Mengjie Yu
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, 866 Yuhangtang Road, Hangzhou, 310058, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Zhejiang University, 866 Yuhangtang Road, Hangzhou, 310058, China
| | - Muhammad Afzal
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, 866 Yuhangtang Road, Hangzhou, 310058, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Zhejiang University, 866 Yuhangtang Road, Hangzhou, 310058, China
| | - Zhongming Dai
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, 866 Yuhangtang Road, Hangzhou, 310058, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Zhejiang University, 866 Yuhangtang Road, Hangzhou, 310058, China
| | - Philip Brookes
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, 866 Yuhangtang Road, Hangzhou, 310058, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Zhejiang University, 866 Yuhangtang Road, Hangzhou, 310058, China
| | - Jianming Xu
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, 866 Yuhangtang Road, Hangzhou, 310058, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Zhejiang University, 866 Yuhangtang Road, Hangzhou, 310058, China.
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Khan MI, Cheema SA, Anum S, Niazi NK, Azam M, Bashir S, Ashraf I, Qadri R. Phytoremediation of Agricultural Pollutants. CONCEPTS AND STRATEGIES IN PLANT SCIENCES 2020. [DOI: 10.1007/978-3-030-00099-8_2] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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Remediation of Organically Contaminated Soil Through the Combination of Assisted Phytoremediation and Bioaugmentation. APPLIED SCIENCES-BASEL 2019. [DOI: 10.3390/app9224757] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Here, we aimed to bioremediate organically contaminated soil with Brassica napus and a bacterial consortium. The bioaugmentation consortium consisted of four endophyte strains that showed plant growth-promoting traits (three Pseudomonas and one Microbacterium) plus three strains with the capacity to degrade organic compounds (Burkholderia xenovorans LB400, Paenibacillus sp. and Lysinibacillus sp.). The organically contaminated soil was supplemented with rhamnolipid biosurfactant and sodium dodecyl benzenesulfonate to increase the degradability of the sorbed contaminants. Soils were treated with organic amendments (composted horse manure vs. dried cow slurry) to promote plant growth and stimulate soil microbial activity. Apart from quantification of the expected decrease in contaminant concentrations (total petroleum hydrocarbons, polycyclic aromatic hydrocarbons), the effectiveness of our approach was assessed in terms of the recovery of soil health, as reflected by the values of different microbial indicators of soil health. Although the applied treatments did not achieve a significant decrease in contaminant concentrations, a significant improvement of soil health was observed in our amended soils (especially in soils amended with dried cow slurry), pointing out a not-so-uncommon situation in which remediation efforts fail from the point of view of the reduction in contaminant concentrations while succeeding to recover soil health.
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18
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Cadmium Hyperaccumulation and Translocation in Impatiens Glandulifera: From Foe to Friend? SUSTAINABILITY 2019. [DOI: 10.3390/su11185018] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The use of phytoremediation to sustainably recover areas contaminated by toxic heavy metals such as cadmium (Cd) has been made feasible since the discovery of hyperaccumulator plants. This study examines the potential of the invasive Impatiens glandulifera for phytoremediation propensity of Cd. In these experiments, the plants were exposed to and tested for Cd accumulation; the propensity to accumulate other heavy metals, such as Zinc, was not investigated. The efficacy of phytoaccumulation was assessed over two trials (Cd concentrations of 20 mg/kg to 150 mg/kg) via examination of bioconcentration factor (BCF), translocation factor (TF), and total removal (TR). Exposure to Cd levels of up to 150 mg/kg in the trials did not affect the biomass of the plants compared to the control. Impatiens glandulifera accumulated cadmium at a rate of 276 to 1562 mg/kgin stems, with BCFs, TFs, and TRs of 64.6 to 236.4, 0.2 to 1.2, and 3.6 to 29.2 mg Cd, respectively. In vitro germination revealed unprecedented germination ability, demonstrating the remarkable hypertolerance of I. glandulifera, with no significant difference in the germination of seedlings exposed to 1000 mg/kg Cd compared to the control. This study also examined the localization of Cd in plant tissues via a histochemical assay using dithizone. The results presented herein suggest that I. glandulifera can act as a hyperaccumulator of Cd for phytoremediation.
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Potential Benefits and Risks for Soil Health Derived From the Use of Organic Amendments in Agriculture. AGRONOMY-BASEL 2019. [DOI: 10.3390/agronomy9090542] [Citation(s) in RCA: 47] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
The use of organic amendments in agriculture is a common practice due to their potential to increase crop productivity and enhance soil health. Indeed, organic amendments of different origin and composition (e.g., animal slurry, manure, compost, sewage sludge, etc.) can supply valuable nutrients to the soil, as well as increase its organic matter content, with concomitant benefits for soil health. However, the application of organic amendments to agricultural soil entails a variety of risks for environmental and human health. Organic amendments often contain a range of pollutants, including heavy metals, persistent organic pollutants, potential human pathogens, and emerging pollutants. Regarding emerging pollutants, the presence of antibiotic residues, antibiotic-resistant bacteria, and antibiotic-resistance genes in agricultural amendments is currently a matter of much concern, due to the concomitant risks for human health. Similarly, currently, the introduction of microplastics to agricultural soil, via the application of organic amendments (mainly, sewage sludge), is a topic of much relevance, owing to its magnitude and potential adverse effects for environmental health. There is, currently, much interest in the development of efficient strategies to mitigate the risks associated to the application of organic amendments to agricultural soil, while benefiting from their numerous advantages.
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Sun X, Li B, Han F, Xiao E, Wang Q, Xiao T, Sun W. Vegetation type impacts microbial interaction with antimony contaminants in a mining-contaminated soil environment. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2019; 252:1872-1881. [PMID: 31374407 DOI: 10.1016/j.envpol.2019.06.070] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2019] [Revised: 06/03/2019] [Accepted: 06/18/2019] [Indexed: 06/10/2023]
Abstract
Antimony (Sb) contamination is a growing environmental concern due to the increasing use of this metalloid in mining and industrial activities. The remediation of Sb-contaminated soil is a lengthy and costly process. Phytoremediation has been suggested as a cost-effective method for the long-term management of Sb-contaminated sites. Various plant types have been found to thrive in contaminated sites and have the potential to remediate Sb contamination; however, their impacts on Sb speciation and the indigenous microbial community remain unclear. In the current study, soils from three types of vegetation environment (i.e., grass, forest, and agricultural) were collected from two Sb mining areas in Guizhou, China. Comparisons of geochemical and microbiological properties among the three vegetation types revealed that vegetation was a major driver of soil biogeochemical characteristics. Contaminant fractions (i.e., extractable fractions of Sb and As) had a greater influence on microbial communities in grass and forest soil, whereas pH had a greater impact in agricultural soil. This difference may indicate distinct microbe-environment interactions in agricultural soil affected by anthropogenic activity. The dominant taxa, including Flavobacterium, Geobacter, Janthinobacterium, Clostridium, and Mycobacterium responded positively to various contaminant fractions, indicating that the community had adapted to the chronically contaminated environment. However, the regulation of these dominant genera by geochemical properties appears to be taxon-specific. Our results demonstrate that vegetation type has a substantial impact on Sb and As biogeochemical cycles, and should be considered in future remediation efforts.
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Affiliation(s)
- Xiaoxu Sun
- Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangzhou 510650, China
| | - Baoqin Li
- Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangzhou 510650, China
| | - Feng Han
- Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangzhou 510650, China
| | - Enzong Xiao
- Key Laboratory of Water Quality and Conservation in the Pearl River Delta, Ministry of Education, School of Environmental Science and Engineering, Guangzhou University, Guangzhou 510006, China
| | - Qi Wang
- Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangzhou 510650, China
| | - Tangfu Xiao
- Key Laboratory of Water Quality and Conservation in the Pearl River Delta, Ministry of Education, School of Environmental Science and Engineering, Guangzhou University, Guangzhou 510006, China
| | - Weimin Sun
- Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangzhou 510650, China.
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Liu J, Yao J, Sunahara G, Wang F, Li Z, Duran R. Nonferrous metal (loid) s mediate bacterial diversity in an abandoned mine tailing impoundment. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2019; 26:24806-24818. [PMID: 31240654 DOI: 10.1007/s11356-019-05092-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/21/2018] [Accepted: 04/04/2019] [Indexed: 06/09/2023]
Abstract
Migration and transformation of toxic metal (loid) s in tailing sites inevitably lead to ecological disturbances and serious threats to the surroundings. However, the horizontal and vertical distribution of bacterial diversity has not been determined in nonferrous metal (loid) tailing ponds, especially in Guangxi China, where the world's largest and potentially most toxic sources of metal (loid) s are located. Distribution of bacterial communities was stable at horizontal levels. At the surface (0-10 cm), the stability was most attributed to Bacillus and Enterococcus, while bacterial communities at the subsurface (50 cm) were mainly contributed by Nitrospira and Sulfuricella. Variable vertical distribution of bacterial communities has led to the occurrence of specific genera and specific predicted functions (such as transcription regulation factors). Sulfurifustis (a S-oxidizing and inorganic carbon fixing bacteria) genera were specific at the surface, whereas Streptococcus-related genera were found at the surface and subsurface, but were more abundant in the latter depth. Physical-chemical parameters, such as pH, TN, and metal (loid) (As, Cd, Pb, Cu, and Zn) concentrations were the main drivers of bacterial community abundance, diversity, composition, and metabolic functions. These results increase our understanding of the physical-chemical effects on the spatial distribution of bacterial communities and provide useful insight for the bioremediation and site management of nonferrous metal (loid) tailings.
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Affiliation(s)
- Jianli Liu
- School of Energy and Environmental Engineering, University of Science and Technology Beijing, 30 Xueyuan Road, Haidian District, Beijing, 100083, China
| | - Jun Yao
- School of Water Resource and Environment Engineering, Research Center of Environmental Sciences and Engineering, China University of Geosciences (Beijing), 29 Xueyuan Road, Haidian District, Beijing, 100083, China.
| | - Geoffrey Sunahara
- School of Water Resource and Environment Engineering, Research Center of Environmental Sciences and Engineering, China University of Geosciences (Beijing), 29 Xueyuan Road, Haidian District, Beijing, 100083, China
- Department of Natural Resource Sciences, McGill University, Montreal, H9X3V9, Quebec, Canada
| | - Fei Wang
- School of Energy and Environmental Engineering, University of Science and Technology Beijing, 30 Xueyuan Road, Haidian District, Beijing, 100083, China
| | - Zifu Li
- School of Energy and Environmental Engineering, University of Science and Technology Beijing, 30 Xueyuan Road, Haidian District, Beijing, 100083, China.
| | - Robert Duran
- School of Water Resource and Environment Engineering, Research Center of Environmental Sciences and Engineering, China University of Geosciences (Beijing), 29 Xueyuan Road, Haidian District, Beijing, 100083, China
- Equipe Environnement et Microbiologie, MELODY group, Université de Pau et des Pays de l'Adour, IPREM UMR CNRS 5254, BP 1155, 64013, Pau, Cedex, France
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Luo J, Liu Y, Tao Q, Hou Q, Wu K, Song Y, Liu Y, Guo X, Li J, Hashmi MLUR, Liang Y, Li T. Successive phytoextraction alters ammonia oxidation and associated microbial communities in heavy metal contaminated agricultural soils. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 664:616-625. [PMID: 30763842 DOI: 10.1016/j.scitotenv.2019.01.315] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2018] [Revised: 01/22/2019] [Accepted: 01/24/2019] [Indexed: 06/09/2023]
Abstract
Phytoextraction is an attractive strategy for remediation of soils contaminated by heavy metal (HM), yet the effects of this practice on biochemical processes involved in soil nutrient cycling remain unknown. Here we investigated the impact of successive phytoextraction with a Cd/Zn co-hyperaccumulator Sedum alfredii (Crassulaceae) on potential nitrification rates (PNRs), abundance and composition of nitrifying communities and functional genes associated with nitrification using archaeal and bacterial 16S rRNA gene profiling and quantitative real-time PCR. The PNRs in rhizosphere were significantly (P < 0.05) lower than in the unplanted soils, and decreased markedly with planting time. The decrease of PNR was more paralleled by changes in numbers of copy and transcript of archaeal amoA gene than the bacterial counterpart. Phylogenetic analysis revealed that phytoextraction induced shifts in community structure of soil group 1.1b lineage-dominated ammonia-oxidizing archaea (AOA), Nitrosospira cluster 3-like ammonia-oxidizing bacteria (AOB) and Nitrospira-like nitrite-oxidizing bacteria (NOB). A strong positive correlation was observed between amoA gene transcript numbers and PNRs, whereas root exudates showed negative effect on PNR. This effect was further corroborated by incubation test with the concentrated root exudates of S. alfredii. Partial least squares path model demonstrated that PNR was predominantly controlled by number of AOA amoA gene transcripts which were strongly influenced by root exudation and HM level in soil. Our result reveals that successive phytoextraction of agricultural soil contaminated by HMs using S. alfredii could inhibit ammonia oxidation and thereby reduce nitrogen loss.
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Affiliation(s)
- Jipeng Luo
- Ministry of Education Key Laboratory of Environmental Remediation and Ecological Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Yuying Liu
- Ministry of Education Key Laboratory of Environmental Remediation and Ecological Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Qi Tao
- Ministry of Education Key Laboratory of Environmental Remediation and Ecological Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China; College of Resources, Sichuan Agricultural University, Chengdu 611130, China
| | - Qiong Hou
- Ministry of Education Key Laboratory of Environmental Remediation and Ecological Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Keren Wu
- Ministry of Education Key Laboratory of Environmental Remediation and Ecological Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Yuchao Song
- Ministry of Education Key Laboratory of Environmental Remediation and Ecological Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Yuankun Liu
- Ministry of Education Key Laboratory of Environmental Remediation and Ecological Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Xinyu Guo
- Ministry of Education Key Laboratory of Environmental Remediation and Ecological Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Jinxing Li
- Ministry of Education Key Laboratory of Environmental Remediation and Ecological Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Muhammad Laeeq Ur Rehman Hashmi
- Ministry of Education Key Laboratory of Environmental Remediation and Ecological Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Yongchao Liang
- Ministry of Education Key Laboratory of Environmental Remediation and Ecological Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Tingqiang Li
- Ministry of Education Key Laboratory of Environmental Remediation and Ecological Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China.
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23
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Gómez-Sagasti MT, Epelde L, Anza M, Urra J, Alkorta I, Garbisu C. The impact of nanoscale zero-valent iron particles on soil microbial communities is soil dependent. JOURNAL OF HAZARDOUS MATERIALS 2019; 364:591-599. [PMID: 30390579 DOI: 10.1016/j.jhazmat.2018.10.034] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2018] [Revised: 09/24/2018] [Accepted: 10/11/2018] [Indexed: 06/08/2023]
Abstract
The application of nanoscale zero-valent iron particles (nZVI) for the remediation of contaminated sites is very promising. However, information concerning the ecotoxicity of nZVI on soil microbial communities and, hence, soil quality, is still scarce. We carried out a three-month experiment to evaluate the impact of the application of different concentrations of nZVI (from 1 to 20 mg g DW soil-1) on soil microbial properties in a clay-loam versus a sandy-loam soil. Data on microbial biomass (total bacteria and fungi by qPCR, microbial biomass carbon), activity (β-glucosidase, arylsulphatase and urease activities), and functional (Biolog Ecoplates™) and structural (ARISA, 16S rRNA amplicon sequencing) diversity evidenced that the sandy-loam soil was more vulnerable to the presence of nZVI than the clay-loam soil. In the sandy-loam soil, arylsulphatase activity and bacterial abundance, richness and diversity were susceptible to the presence of nZVI. The high content of clay and organic matter present in the clay-loam soil may explain the observed negligible effects of nZVI on soil microbial properties. It was concluded that the impact of nZVI on soil microbial communities and, hence, soil quality, is soil dependent.
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Affiliation(s)
- María T Gómez-Sagasti
- Department of Plan Biology and Ecology, University of the Basque Country, P.O. Box 644, 48080 Bilbao, Spain
| | - Lur Epelde
- NEIKER-Tecnalia, Department of Conservation of Natural Resources, Soil Microbial Ecology Group, c/Berreaga 1, E-48160 Derio, Spain
| | - Mikel Anza
- NEIKER-Tecnalia, Department of Conservation of Natural Resources, Soil Microbial Ecology Group, c/Berreaga 1, E-48160 Derio, Spain
| | - Julen Urra
- NEIKER-Tecnalia, Department of Conservation of Natural Resources, Soil Microbial Ecology Group, c/Berreaga 1, E-48160 Derio, Spain
| | - Itziar Alkorta
- Instituto BIOFISIKA (CSIC, UPV/EHU), Department of Biochemistry and Molecular Biology, University of the Basque Country, P.O. Box 644, 48080 Bilbao, Spain
| | - Carlos Garbisu
- NEIKER-Tecnalia, Department of Conservation of Natural Resources, Soil Microbial Ecology Group, c/Berreaga 1, E-48160 Derio, Spain.
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The Effects of Different Lead Pollution Levels on Soil Microbial Quantities and Metabolic Function with/without Salix integra Thunb. Planting. FORESTS 2019. [DOI: 10.3390/f10020077] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Background and Objectives: Salix integra Thunb., a fast-growing woody species, has been used in phytoremediation in recent years. It has the potential to accumulate high amounts of lead (Pb) in its growth, however, its effects on soil microbial community structure and function during its phytoextraction processes are not well understood, especially at different pollution levels. Materials and Methods: In our study, we set unplanted and planted Salix integra in areas with four levels of Pb treatments (0, 500, 1000, and 1500 mg/kg). After six months of planting, the rhizospheric soil, bulk soil, and unplanted soil were collected. Soil properties and microbes participating in nitrogen and phosphorus cycling were measured, following standard methods. Microbial metabolic functions were assessed using a Biolog-ECO microplate. Results: The bacteria (nitrogen-fixing bacteria, ammonifying bacteria, inorganic phosphorus-solubilizing bacteria, and nitrosobacteria) all increased in the 500 mg/kg treatment and decreased in the 1500 mg/kg treatment compared with the 0 mg/kg treatment, especially in rhizospheric soil. The microbial metabolisms decreased along with the increase of Pb levels, with the exception of the rhizospheric soil with a 500 mg/kg treatment. The metabolic patterns were relative to the pollution levels. The utilization of carbohydrates was decreased, and of amino acids or fatty acids was increased, in the 500 mg/kg treatment, while the opposite occurred in the 1500 mg/kg treatment. The values of soil properties, microbial quantities, and metabolic activities were higher in rhizospheric than bulk soil, while the differences between bulk and unplanted soil were different among the different Pb treatments. The soil properties had little effect on the microbial quantities and metabolic activities. Conclusions: S. integra planting and Pb levels had an interactive effect on the microbial community. In general, S. integra planting promoted microbial quantities and metabolic activity in rhizospheric soil. Lower Pb pollution increased microbial quantities and promoted the utilization of amino acids or fatty acids, while higher Pb concentrations decreased microbial quantities and metabolic activities, and promoted the utilization of carbohydrates.
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Urra J, Alkorta I, Mijangos I, Epelde L, Garbisu C. Application of sewage sludge to agricultural soil increases the abundance of antibiotic resistance genes without altering the composition of prokaryotic communities. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 647:1410-1420. [PMID: 30180347 DOI: 10.1016/j.scitotenv.2018.08.092] [Citation(s) in RCA: 79] [Impact Index Per Article: 15.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/01/2018] [Revised: 07/20/2018] [Accepted: 08/02/2018] [Indexed: 05/21/2023]
Abstract
The application of sewage sludge as soil amendment is a common agricultural practice. However, wastewater treatment plants, sewage sludge and sewage sludge-amended soils have been reported as hotspots for the appearance and dissemination of antibiotic resistance, driven, among other factors, by selection pressure exerted by co-exposure to antibiotics and heavy metals. To address this threat to environmental and human health, soil samples from a long-term (24 years) field experiment, carried out to study the impact of thermally dried and anaerobically digested sewage sludge (at different doses and frequencies of application) on agricultural soil quality, were investigated for the presence of genes encoding antibiotic resistance (ARGs) and mobile genetic elements (MGEs). Sewage sludge-induced changes in specific soil physicochemical and microbial properties, as indicators of soil quality, were also investigated. The application of sewage sludge increased the total concentration of copper and zinc in amended soils, but without affecting the bioavailability of these metals, possibly due to the high values of soil pH and organic matter content. Soil microbal quality, as reflected by the value of the Soil Quality Index, was higher in sewage sludge-amended soils. Similarly, the application of sewage sludge increased soil microbial activity and biomass, as well as the abundance of ARGs and MGE genes, posing a risk of dissemination of antibiotic resistance. In contrast, the composition of soil prokaryotic communities was not significantly altered by the application of sewage sludge. We found correlation between soil Cu and Zn concentrations and the abundance of ARGs and MGE genes. It was concluded that sewage sludge-derived amendments must be properly treated and managed if they are to be applied to agricultural soil.
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Affiliation(s)
- Julen Urra
- NEIKER-Tecnalia, Department of Conservation of Natural Resources, Soil Microbial Ecology Group, c/Berreaga 1, E-48160 Derio, Spain.
| | - Itziar Alkorta
- Instituto BIOFISIKA (CSIC, UPV/EHU), Department of Biochemistry and Molecular Biology, University of the Basque Country, P.O. Box 644, 48080 Bilbao, Spain
| | - Iker Mijangos
- NEIKER-Tecnalia, Department of Conservation of Natural Resources, Soil Microbial Ecology Group, c/Berreaga 1, E-48160 Derio, Spain
| | - Lur Epelde
- NEIKER-Tecnalia, Department of Conservation of Natural Resources, Soil Microbial Ecology Group, c/Berreaga 1, E-48160 Derio, Spain
| | - Carlos Garbisu
- NEIKER-Tecnalia, Department of Conservation of Natural Resources, Soil Microbial Ecology Group, c/Berreaga 1, E-48160 Derio, Spain
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26
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Xue K, Zhou J, Van Nostrand J, Mench M, Bes C, Giagnoni L, Renella G. Functional activity and functional gene diversity of a Cu-contaminated soil remediated by aided phytostabilization using compost, dolomitic limestone and a mixed tree stand. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2018; 242:229-238. [PMID: 29980041 DOI: 10.1016/j.envpol.2018.06.057] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2018] [Revised: 06/15/2018] [Accepted: 06/18/2018] [Indexed: 06/08/2023]
Abstract
Trace elements (TEs) availability, biochemical activity and functional gene diversity was studied in a Cu-contaminated soil, revegetated for six years with a mixed stand of willow, black poplar, and false indigo-bush, and amended or not with compost plus dolomitic limestone (OMDL). The OMDL amendment significantly reduced Cu and As availability and soil toxicity, and increased the biochemical activity and microbial functional diversity assessed with the GEOCHIP technique, as compared to the unamended soil (Unt). The OMDL soil showed significantly higher abundance of 25 functional genes involved in decomposition organic compounds, and 11, 3 and 11 functional genes involved in the N, P and S biogeochemical cycles. Functional gene abundance was positively correlated with nutrient contents but negatively correlated with Cu availability and soil toxicity. The abundance of microbial functional genes encoding for resistance to various TEs also increased, possibly due to the microbial proliferation and lower Cu exposure in the presence of high total soil Cu concentration. Genes encoding for antibiotic resistance due to the co-occurrence of TEs and antibiotic resistant genes on genetic mobile elements. Overall, phytomanagement confirmed its potential to restore the biological fertility and diversity of a severely Cu-contaminated soil, but the increase of TEs and antibiotic resistant gene abundances deserve attention in future studies.
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Affiliation(s)
- Kai Xue
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, China; Institute for Environmental Genomics and Department of Botany and Microbiology, University of Oklahoma, Norman, OK, 730722, USA
| | - Jizhong Zhou
- Institute for Environmental Genomics and Department of Botany and Microbiology, University of Oklahoma, Norman, OK, 730722, USA
| | - Joy Van Nostrand
- Institute for Environmental Genomics and Department of Botany and Microbiology, University of Oklahoma, Norman, OK, 730722, USA
| | - Michel Mench
- BIOGECO, INRA, University of Bordeaux, 33615, Pessac Cedex, France
| | - Clemence Bes
- BIOGECO, INRA, University of Bordeaux, 33615, Pessac Cedex, France
| | - Laura Giagnoni
- Department of Agrifood Production and Environmental Sciences, University of Florence, Italy
| | - Giancarlo Renella
- Department of Agrifood Production and Environmental Sciences, University of Florence, Italy.
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Gómez-Sagasti MT, Hernández A, Artetxe U, Garbisu C, Becerril JM. How Valuable Are Organic Amendments as Tools for the Phytomanagement of Degraded Soils? The Knowns, Known Unknowns, and Unknowns. FRONTIERS IN SUSTAINABLE FOOD SYSTEMS 2018. [DOI: 10.3389/fsufs.2018.00068] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
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Anza M, Salazar O, Epelde L, Garbisu C. Data on the selection of biostimulating agents for the bioremediation of soil simultaneously contaminated with lindane and zinc. Data Brief 2018; 20:1371-1377. [PMID: 30255115 PMCID: PMC6148834 DOI: 10.1016/j.dib.2018.08.203] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2018] [Revised: 08/29/2018] [Accepted: 08/30/2018] [Indexed: 11/18/2022] Open
Abstract
The bioremediation of contaminated soil often involves the addition of organic/inorganic amendments and mobilizing agents (e.g. surfactants, detergents), in order to stimulate the growth and degrading activity of soil microbial populations and increase contaminant bioavailability. For this data article we carried out an experiment to select biostimulating agents for the bioremediation of soil simultaneously contaminated with lindane (HCH, 10 mg kg−1 DW soil) and Zinc (Zn, 1500 mg kg−1 DW soil). To this purpose, a factorial design was used to test the effect of three organic amendments (i.e. hen manure, composted horse manure, cow slurry) and three mobilizing agents (i.e. sodium dodecylbenzenesulfonate (SDS), rhamnolipids and Tween-80) on the reduction of total HCH and bioavailable Zn concentration in soil. Similarly, the effect of the addition of cyclohexane, as chemical inducer of HCH degradation, was also studied. The addition of SDS, rhamnolipids and Tween-80 significantly reduced HCH concentration in soil, regardless of the presence of other biostimulating agents. When added individually, the three organic amendments (hen manure, composted horse manure, cow slurry) significantly reduced bioavailable Zn concentration in soil. These data provide useful information for the bioremediation, through biostimulation, of soils simultaneously contaminated with HCH and Zn.
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Epelde L, Jauregi L, Urra J, Ibarretxe L, Romo J, Goikoetxea I, Garbisu C. Characterization of Composted Organic Amendments for Agricultural Use. FRONTIERS IN SUSTAINABLE FOOD SYSTEMS 2018. [DOI: 10.3389/fsufs.2018.00044] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
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30
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Strachel R, Wyszkowska J, Baćmaga M. An Evaluation of the Effectiveness of Sorbents in the Remediation of Soil Contaminated with Zinc. WATER, AIR, AND SOIL POLLUTION 2018; 229:235. [PMID: 30046198 PMCID: PMC6028854 DOI: 10.1007/s11270-018-3882-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2018] [Accepted: 06/20/2018] [Indexed: 05/26/2023]
Abstract
Zinc exerts negative effects on soil and contributing to the degradation of soil ecosystems. New solutions for restoring healthy soil activity are therefore needed. The aim of this study was to evaluate the effectiveness of sorbents in the biological remediation of soil contaminated with zinc. A pot experiment was conducted on loamy sand. The tested plant was maize (Zea mays). Soil was contaminated with zinc chloride doses of 0, 100, 300, and 900 mg Zn2+ kg-1 DM soil (dry matter of soil). Alginate, biochar, sepiolite, calcined halloysite, and a molecular sieve were added to soil in amounts corresponding to 2.5% of soil weight to minimize zinc's potentially toxic effects on the biological properties of soil. The application of zinc stimulated the proliferation of all analyzed microbial groups. Zinc exerted negative effects on the ecophysiological diversity (EP) of fungi and the activity of dehydrogenases, catalase, and acid phosphatase. The applied sorbents modified the microbiological and biochemical properties of soil. In zinc-contaminated soil, alginate, biochar, and molecular sieve increased the counts of organotrophic, oligotrophic, and actinobacteria. Sorbents were not highly effective in promoting fungal growth and exerted varied effects on the activity of soil enzymes. The molecular sieve stimulated the activity of all soil enzymes, excluding β-glucosidase. Alginate minimized the negative influence of zinc on dehydrogenases and acid phosphatase, and biochar-on catalase, sepiolite, and calcined halloysite -on acid phosphatase. By modifying the biological properties of soil, the tested sorbents contributed to an increase in maize yields and a decrease in zinc uptake by maize plants.
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Affiliation(s)
- Rafał Strachel
- Department of Microbiology, University of Warmia and Mazury in Olsztyn, Plac Łódzki 3, 10-727 Olsztyn, Poland
| | - Jadwiga Wyszkowska
- Department of Microbiology, University of Warmia and Mazury in Olsztyn, Plac Łódzki 3, 10-727 Olsztyn, Poland
| | - Małgorzata Baćmaga
- Department of Microbiology, University of Warmia and Mazury in Olsztyn, Plac Łódzki 3, 10-727 Olsztyn, Poland
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31
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Alkorta I, Epelde L, Garbisu C. Environmental parameters altered by climate change affect the activity of soil microorganisms involved in bioremediation. FEMS Microbiol Lett 2018; 364:4159367. [PMID: 28961781 DOI: 10.1093/femsle/fnx200] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2017] [Accepted: 09/14/2017] [Indexed: 11/14/2022] Open
Abstract
Bioremediation, based on the use of microorganisms to break down pollutants, can be very effective at reducing soil pollution. But the climate change we are now experiencing is bound to have an impact on bioremediation performance, since the activity and degrading abilities of soil microorganisms are dependent on a series of environmental parameters that are themselves being altered by climate change, such as soil temperature, moisture, amount of root exudates, etc. Many climate-induced effects on soil microorganisms occur indirectly through changes in plant growth and physiology derived from increased atmospheric CO2 concentrations and temperatures, the alteration of precipitation patterns, etc., with a concomitant effect on rhizoremediation performance (i.e. the plant-assisted microbial degradation of pollutants in the rhizosphere). But these effects are extremely complex and mediated by processes such as acclimation and adaptation. Besides, soil microorganisms form complex networks of interactions with a myriad of organisms from many taxonomic groups that will also be affected by climate change, further complicating data interpretation.
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Affiliation(s)
- Itziar Alkorta
- Instituto BIOFISIKA (UPV/EHU-CSIC), Department of Biochemistry and Molecular Biology, University of the Basque Country, PO Box 644, 48080 Bilbao, Spain
| | - Lur Epelde
- Department of Conservation of Natural Resources, Soil Microbial Ecology Group, NEIKER-Tecnalia, Berreaga 1, 48160 Derio, Spain
| | - Carlos Garbisu
- Department of Conservation of Natural Resources, Soil Microbial Ecology Group, NEIKER-Tecnalia, Berreaga 1, 48160 Derio, Spain
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32
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Garbisu C, Garaiyurrebaso O, Lanzén A, Álvarez-Rodríguez I, Arana L, Blanco F, Smalla K, Grohmann E, Alkorta I. Mobile genetic elements and antibiotic resistance in mine soil amended with organic wastes. THE SCIENCE OF THE TOTAL ENVIRONMENT 2018; 621:725-733. [PMID: 29207350 DOI: 10.1016/j.scitotenv.2017.11.221] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2017] [Revised: 11/19/2017] [Accepted: 11/19/2017] [Indexed: 06/07/2023]
Abstract
Metal resistance has been associated with antibiotic resistance due to co- or cross-resistance mechanisms. Here, metal contaminated mine soil treated with organic wastes was screened for the presence of mobile genetic elements (MGEs). The occurrence of conjugative IncP-1 and mobilizable IncQ plasmids, as well as of class 1 integrons, was confirmed by PCR and Southern blot hybridization, suggesting that bacteria from these soils have gene-mobilizing capacity with implications for the dissemination of resistance factors. Moreover, exogenous isolation of MGEs from the soil bacterial community was attempted under antibiotic selection pressure by using Escherichia coli as recipient. Seventeen putative transconjugants were identified based on increased antibiotic resistance. Metabolic traits and metal resistance of putative transconjugants were investigated, and whole genome sequencing was carried out for two of them. Most putative transconjugants displayed a multi-resistant phenotype for a broad spectrum of antibiotics. They also displayed changes regarding the ability to metabolise different carbon sources, RNA: DNA ratio, growth rate and biofilm formation. Genome sequencing of putative transconjugants failed to detect genes acquired by horizontal gene transfer, but instead revealed a number of nonsense mutations, including in ubiH, whose inactivation was linked to the observed resistance to aminoglycosides. Our results confirm that mine soils contain MGEs encoding antibiotic resistance. Moreover, they point out the role of spontaneous mutations in achieving low-level antibiotic resistance in a short time, which was associated with a trade-off in the capability to metabolise specific carbon sources.
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Affiliation(s)
- Carlos Garbisu
- NEIKER-Tecnalia, Department of Conservation of Natural Resources, Soil Microbial Ecology Group, Berreaga 1, 48160 Derio, Spain
| | - Olatz Garaiyurrebaso
- Instituto BIOFISIKA (CSIC, UPV/EHU), Department of Biochemistry and Molecular Biology, University of the Basque Country, P.O. Box 644, 48080 Bilbao, Spain
| | - Anders Lanzén
- NEIKER-Tecnalia, Department of Conservation of Natural Resources, Soil Microbial Ecology Group, Berreaga 1, 48160 Derio, Spain
| | - Itxaso Álvarez-Rodríguez
- Instituto BIOFISIKA (CSIC, UPV/EHU), Department of Biochemistry and Molecular Biology, University of the Basque Country, P.O. Box 644, 48080 Bilbao, Spain
| | - Lide Arana
- Instituto BIOFISIKA (CSIC, UPV/EHU), Department of Biochemistry and Molecular Biology, University of the Basque Country, P.O. Box 644, 48080 Bilbao, Spain
| | - Fernando Blanco
- NEIKER-Tecnalia, Department of Conservation of Natural Resources, Soil Microbial Ecology Group, Berreaga 1, 48160 Derio, Spain
| | - Kornelia Smalla
- Julius Kühn-Institut, Federal Research Centre for Cultivated Plants, Institute for Epidemiology and Pathogen Diagnostics, Messeweg 11-12, 38104 Braunschweig, Germany
| | - Elisabeth Grohmann
- Beuth University of Applied Sciences, Life Sciences and Technology, Department of Microbiology, Seestraße 64, 13347 Berlin, Germany
| | - Itziar Alkorta
- Instituto BIOFISIKA (CSIC, UPV/EHU), Department of Biochemistry and Molecular Biology, University of the Basque Country, P.O. Box 644, 48080 Bilbao, Spain.
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Burges A, Alkorta I, Epelde L, Garbisu C. From phytoremediation of soil contaminants to phytomanagement of ecosystem services in metal contaminated sites. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2018; 20:384-397. [PMID: 28862473 DOI: 10.1080/15226514.2017.1365340] [Citation(s) in RCA: 100] [Impact Index Per Article: 16.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
Since the emergence of phytoremediation, much research has focused on its development for (i) the removal of metals from soil and/or (ii) the reduction of metal bioavailability, mobility, and ecotoxicity in soil. Here, we review the lights and shades of the two main strategies (i.e., phytoextraction and phytostabilization) currently used for the phytoremediation of metal contaminated soils, irrespective of the level of such contamination. Both strategies face limitations to become successful at commercial scale and, then, often generate skepticism regarding their usefulness. Recent innovative approaches and paradigms are gradually establishing these phytoremediation strategies as suitable options for the management of metal contaminated soils. The combination of these phytotechnologies with a sustainable and profitable site use (a strategy called phytomanagement) grants value to the many benefits that can be obtained during the phytoremediation of metal contaminated sites, such as, for instance, the restoration of important ecosystem services, e.g. nutrient cycling, carbon storage, water flow regulation, erosion control, water purification, fertility maintenance, etc.
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Affiliation(s)
- Aritz Burges
- a Department of Conservation of Natural Resources , NEIKER-Tecnalia, Basque Institute of Agricultural Research and Development, Soil Microbial Ecology Group , Derio , Spain
| | - Itziar Alkorta
- b Department of Biochemistry and Molecular Biology , BIOFISIKA Institute (CSIC-UPV/EHU), University of the Basque Country , Bilbao , Spain
| | - Lur Epelde
- a Department of Conservation of Natural Resources , NEIKER-Tecnalia, Basque Institute of Agricultural Research and Development, Soil Microbial Ecology Group , Derio , Spain
| | - Carlos Garbisu
- a Department of Conservation of Natural Resources , NEIKER-Tecnalia, Basque Institute of Agricultural Research and Development, Soil Microbial Ecology Group , Derio , Spain
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Lacalle RG, Gómez-Sagasti MT, Artetxe U, Garbisu C, Becerril JM. Brassica napus has a key role in the recovery of the health of soils contaminated with metals and diesel by rhizoremediation. THE SCIENCE OF THE TOTAL ENVIRONMENT 2018; 618:347-356. [PMID: 29132002 DOI: 10.1016/j.scitotenv.2017.10.334] [Citation(s) in RCA: 45] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2017] [Revised: 10/31/2017] [Accepted: 10/31/2017] [Indexed: 05/06/2023]
Abstract
Contaminated soils are frequently characterized by the simultaneous presence of organic and inorganic contaminants, as well as a poor biological and nutritional status. Rhizoremediation, the combined use of phytoremediation and bioremediation, has been proposed as a Gentle Remediation Option to rehabilitate multi-contaminated soils. Recently, newer techniques, such as the application of metallic nanoparticles, are being deployed in an attempt to improve traditional remediation options. In order to implement a phytomanagement strategy on calcareous alkaline peri-urban soils simultaneously contaminated with several metals and diesel, we evaluated the effectiveness of Brassica napus L., a profitable crop species, assisted with organic amendment and zero-valent iron nanoparticles (nZVI). A two-month phytotron experiment was carried out using two soils, i.e. amended and unamended with organic matter. Soils were artificially contaminated with Zn, Cu and Cd (1500, 500 and 50mgkg-1, respectively) and diesel (6000mgkg-1). After one month of stabilization, soils were treated with nZVI and/or planted with B. napus. The experiment was conducted with 16 treatments resulting from the combination of the following factors: amended/unamended, contaminated/non-contaminated, planted/unplanted and nZVI/no-nZVI. Soil physicochemical characteristics and biological indicators (plant performance and soil microbial properties) were determined at several time points along the experiment. Carbonate content of soils was the crucial factor for metal immobilization and, concomitantly, reduction of metal toxicity. Organic amendment was essential to promote diesel degradation and to improve the health and biomass of B. napus. Soil microorganisms degraded preferably diesel hydrocarbons of biological origin (biodiesel). Plants had a remarkable positive impact on the activity and functional diversity of soil microbial communities. The nZVI were ineffective as soil remediation tools, but did not cause any toxicity. We concluded that rhizoremediation with B. napus combined with an organic amendment is promising for the phytomanagement of calcareous soils with mixed (metals and diesel) contamination.
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Affiliation(s)
- Rafael G Lacalle
- Department of Plant Biology and Ecology, University of the Basque Country (UPV/EHU), P.O. Box 644, E-48080 Bilbao, Spain.
| | - María T Gómez-Sagasti
- Department of Plant Biology and Ecology, University of the Basque Country (UPV/EHU), P.O. Box 644, E-48080 Bilbao, Spain
| | - Unai Artetxe
- Department of Plant Biology and Ecology, University of the Basque Country (UPV/EHU), P.O. Box 644, E-48080 Bilbao, Spain
| | - Carlos Garbisu
- NEIKER, Department of Conservation of Natural Resources, c/Berreaga 1, E-48160 Derio, Spain
| | - José M Becerril
- Department of Plant Biology and Ecology, University of the Basque Country (UPV/EHU), P.O. Box 644, E-48080 Bilbao, Spain
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Garbisu C, Garaiyurrebaso O, Epelde L, Grohmann E, Alkorta I. Plasmid-Mediated Bioaugmentation for the Bioremediation of Contaminated Soils. Front Microbiol 2017; 8:1966. [PMID: 29062312 PMCID: PMC5640721 DOI: 10.3389/fmicb.2017.01966] [Citation(s) in RCA: 74] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2017] [Accepted: 09/25/2017] [Indexed: 11/29/2022] Open
Abstract
Bioaugmentation, or the inoculation of microorganisms (e.g., bacteria harboring the required catabolic genes) into soil to enhance the rate of contaminant degradation, has great potential for the bioremediation of soils contaminated with organic compounds. Regrettably, cell bioaugmentation frequently turns into an unsuccessful initiative, owing to the rapid decrease of bacterial viability and abundance after inoculation, as well as the limited dispersal of the inoculated bacteria in the soil matrix. Genes that encode the degradation of organic compounds are often located on plasmids and, consequently, they can be spread by horizontal gene transfer into well-established, ecologically competitive, indigenous bacterial populations. Plasmid-mediated bioaugmentation aims to stimulate the spread of contaminant degradation genes among indigenous soil bacteria by the introduction of plasmids, located in donor cells, harboring such genes. But the acquisition of plasmids by recipient cells can affect the host’s fitness, a crucial aspect for the success of plasmid-mediated bioaugmentation. Besides, environmental factors (e.g., soil moisture, temperature, organic matter content) can play important roles for the transfer efficiency of catabolic plasmids, the expression of horizontally acquired genes and, finally, the contaminant degradation activity. For plasmid-mediated bioaugmentation to be reproducible, much more research is needed for a better selection of donor bacterial strains and accompanying plasmids, together with an in-depth understanding of indigenous soil bacterial populations and the environmental conditions that affect plasmid acquisition and the expression and functioning of the catabolic genes of interest.
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Affiliation(s)
- Carlos Garbisu
- Soil Microbial Ecology Group, Department of Conservation of Natural Resources, Neiker Tecnalia, Derio, Spain
| | - Olatz Garaiyurrebaso
- Instituto Biofisika (UPV/EHU, CSIC), Department of Biochemistry and Molecular Biology, University of the Basque Country, Bilbao, Spain
| | - Lur Epelde
- Soil Microbial Ecology Group, Department of Conservation of Natural Resources, Neiker Tecnalia, Derio, Spain
| | | | - Itziar Alkorta
- Soil Microbial Ecology Group, Department of Conservation of Natural Resources, Neiker Tecnalia, Derio, Spain
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Yang W, Zhang T, Lin S, Ni W. Distance-dependent varieties of microbial community structure and metabolic functions in the rhizosphere of Sedum alfredii Hance during phytoextraction of a cadmium-contaminated soil. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2017; 24:14234-14248. [PMID: 28421524 DOI: 10.1007/s11356-017-9007-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2016] [Accepted: 04/07/2017] [Indexed: 06/07/2023]
Abstract
The recovery of microbial community and activities is crucial to the remediation of contaminated soils. Distance-dependent variations of microbial community composition and metabolic characteristics in the rhizospheric soil of hyperaccumulator during phytoextraction are poorly understood. A 12-month phytoextraction experiment with Sedum alfredii in a Cd-contaminated soil was conducted. A pre-stratified rhizobox was used for separating sub-layer rhizospheric (0-2, 2-4, 4-6, 6-8, 8-10 mm from the root mat)/bulk soils. Soil microbial structure and function were analyzed by phospholipid fatty acid (PLFA) and MicroResp™ methods. The concentrations of total and specified PLFA biomarkers and the utilization rates for the 14 substrates (organic carbon) in the 0-2-mm sub-layer rhizospheric soil were significantly increased, as well as decreased with the increase in the distance from the root mat. Microbial structure measured by the ratios of different groups of PLFAs such as fungal/bacterial, monounsaturated/saturated, ratios of Gram-positive to Gram-negative (GP/GN) bacterial, and cyclopropyl/monoenoic precursors and 19:0 cyclo/18:1ω7c were significantly changed in the 0-2-mm soil. The PLFA contents and substrate utilization rates were negatively correlated with pH and total, acid-soluble, and reducible fractions of Cd, while positively correlated with labile carbon. The dynamics of microbial community were likely due to root exudates and Cd uptake by S. alfredii. This study revealed the stimulations and gradient changes of rhizosphere microbial community through phytoextraction, as reduced Cd concentration, pH, and increased labile carbons are due to the microbial community responses.
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Affiliation(s)
- Wenhao Yang
- Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou, 350002, People's Republic of China
- College of Environmental and Resource Sciences, Key Laboratory of Agricultural Resource and Environment of Zhejiang Province, Zhejiang University, Hangzhou, 310058, People's Republic of China
| | - Taoxiang Zhang
- College of Forestry, Fujian Agriculture and Forestry University, Fuzhou, 350002, People's Republic of China
| | - Sen Lin
- College of Environmental and Resource Sciences, Key Laboratory of Agricultural Resource and Environment of Zhejiang Province, Zhejiang University, Hangzhou, 310058, People's Republic of China
| | - Wuzhong Ni
- College of Environmental and Resource Sciences, Key Laboratory of Agricultural Resource and Environment of Zhejiang Province, Zhejiang University, Hangzhou, 310058, People's Republic of China.
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Sun X, Zhu L, Wang J, Wang J, Su B, Liu T, Zhang C, Gao C, Shao Y. Toxic effects of ionic liquid 1-octyl-3-methylimidazolium tetrafluoroborate on soil enzyme activity and soil microbial community diversity. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2017; 135:201-208. [PMID: 27741461 DOI: 10.1016/j.ecoenv.2016.09.026] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2016] [Revised: 09/26/2016] [Accepted: 09/27/2016] [Indexed: 06/06/2023]
Abstract
Ionic liquids (ILs) were considered as "green" solvents and have been used widely because of their excellent properties. But ILs are not as "green" as has been suggested, and the toxic effects of ILs on organisms have been shown in recent years. In the present study, the toxic effects of the IL 1-octyl-3-methylimidazolium tetrafluoroborate ([Omim]BF4) on soil enzyme activity and soil microbial communities at three different concentrations (1.0, 5.0 and 10.0mg/kg) and a control treatment over 40 days of incubation time (sampled on days 10, 20, 30 and 40) were examined under laboratory conditions. The concentrations of [Omim]BF4 in soils were detected by high performance liquid chromatography (HPLC) and the results indicated that [Omim]BF4 were maintained stable in the soil during the exposure period. However, the enzyme activity results showed that urease activity was stimulated on day 20 and then decreased after 30 days of incubation. The activity of β-glucosidase was stimulated after 20 days of incubation in both treatment groups. Moreover, both dehydrogenase and acid phosphatase were inhibited at a high level (10.0mg/kg) only on day 20. The analysis of terminal restriction fragment length polymorphism (T-RFLP) revealed that the soil microbial community structures were altered by [Omim]BF4 and that the soil microbial diversity and evenness of high levels (5.0mg/kg and 10.0mg/kg) treatments were decreased. Moreover, the dominant structure of the microbial communities was not changed by [Omim]BF4. Furthermore, the abundance of the ammonia monooxygenase (amoA) genes of both ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) was examined using real time polymerase chain reaction (RT-PCR). The results revealed that the copy numbers of the amoA-gene were decreased by [Omim]BF4 with the 5.0 and 10.0mg/kg treatments. Based on the experiment, we concluded that high levels (5.0 and 10.0mg/kg) of [Omim]BF4 could have significantly toxic effects on soil enzyme activities and the diversity of the microbial communities.
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Affiliation(s)
- Xi Sun
- Key Laboratory of Agriculture Environment in Universities of Shandong, College of Resources and Environment, Shandong Agricultural University, Taian 271018, PR China
| | - Lusheng Zhu
- Key Laboratory of Agriculture Environment in Universities of Shandong, College of Resources and Environment, Shandong Agricultural University, Taian 271018, PR China.
| | - Jinhua Wang
- Key Laboratory of Agriculture Environment in Universities of Shandong, College of Resources and Environment, Shandong Agricultural University, Taian 271018, PR China
| | - Jun Wang
- Key Laboratory of Agriculture Environment in Universities of Shandong, College of Resources and Environment, Shandong Agricultural University, Taian 271018, PR China
| | - Benying Su
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, PR China.
| | - Tong Liu
- Key Laboratory of Agriculture Environment in Universities of Shandong, College of Resources and Environment, Shandong Agricultural University, Taian 271018, PR China
| | - Cheng Zhang
- Key Laboratory of Agriculture Environment in Universities of Shandong, College of Resources and Environment, Shandong Agricultural University, Taian 271018, PR China
| | - Chong Gao
- Key Laboratory of Agriculture Environment in Universities of Shandong, College of Resources and Environment, Shandong Agricultural University, Taian 271018, PR China
| | - Yuting Shao
- Key Laboratory of Agriculture Environment in Universities of Shandong, College of Resources and Environment, Shandong Agricultural University, Taian 271018, PR China
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Garaiyurrebaso O, Garbisu C, Blanco F, Lanzén A, Martín I, Epelde L, Becerril JM, Jechalke S, Smalla K, Grohmann E, Alkorta I. Long-term effects of aided phytostabilisation on microbial communities of metal-contaminated mine soil. FEMS Microbiol Ecol 2016; 93:fiw252. [DOI: 10.1093/femsec/fiw252] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Revised: 08/21/2016] [Accepted: 12/22/2016] [Indexed: 11/14/2022] Open
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Exploring the Influence of Environmental Factors on Bacterial Communities within the Rhizosphere of the Cu-tolerant plant, Elsholtzia splendens. Sci Rep 2016; 6:36302. [PMID: 27782202 PMCID: PMC5080579 DOI: 10.1038/srep36302] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2016] [Accepted: 10/10/2016] [Indexed: 12/11/2022] Open
Abstract
Bacterial communities of rhizospheric soils play an important role in the tolerance and uptake of metal-tolerant/hyperaccumulating plants to metals, e.g. the Cu-tolerant Elsholtzia splendens native to China. In this work, pyrosequencing of the bacterial 16S rRNA gene was firstly applied to investigate the rhizospheric bacterial community of E. splendens grown at Cu contaminated sites. The 47 phyla including 11 dominant phyla (>1%) in E. splendens rhizosphere were presented. The effects of Cu and other environmental factors (total organic carbon, total nitrogen and pH) on the rhizospheric bacterial community were studied comprehensively. The phyla abundances were affected by the environmental factors to different extent, and we found pH, instead of Cu concentration, influenced UniFrac distance significantly and was identified as the most important environmental factor affecting bacterial community. In addition, the influence of environmental factors on gene profiles was explored according to the predicted metagenomes obtained by PICRUSt (phylogenetic investigation of communities by reconstruction of unobserved states). Our study illustrates a view about Cu-tolerant E. splendens rhizospheric bacterial communities (composition, diversity and gene profiles) and their influencing factors, giving a hand for the understanding on bacterial community is formed and affected in rhizosphere.
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Resilience of Soil Microbial Communities to Metals and Additional Stressors: DNA-Based Approaches for Assessing "Stress-on-Stress" Responses. Int J Mol Sci 2016; 17:ijms17060933. [PMID: 27314330 PMCID: PMC4926466 DOI: 10.3390/ijms17060933] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2016] [Revised: 05/17/2016] [Accepted: 06/06/2016] [Indexed: 01/19/2023] Open
Abstract
Many microbial ecology studies have demonstrated profound changes in community composition caused by environmental pollution, as well as adaptation processes allowing survival of microbes in polluted ecosystems. Soil microbial communities in polluted areas with a long-term history of contamination have been shown to maintain their function by developing metal-tolerance mechanisms. In the present work, we review recent experiments, with specific emphasis on studies that have been conducted in polluted areas with a long-term history of contamination that also applied DNA-based approaches. We evaluate how the “costs” of adaptation to metals affect the responses of metal-tolerant communities to other stress factors (“stress-on-stress”). We discuss recent studies on the stability of microbial communities, in terms of resistance and resilience to additional stressors, focusing on metal pollution as the initial stress, and discuss possible factors influencing the functional and structural stability of microbial communities towards secondary stressors. There is increasing evidence that the history of environmental conditions and disturbance regimes play central roles in responses of microbial communities towards secondary stressors.
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Valentim dos Santos J, Varón-López M, Fonsêca Sousa Soares CR, Lopes Leal P, Siqueira JO, de Souza Moreira FM. Biological attributes of rehabilitated soils contaminated with heavy metals. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2016; 23:6735-6748. [PMID: 26662102 DOI: 10.1007/s11356-015-5904-6] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2015] [Accepted: 11/30/2015] [Indexed: 06/05/2023]
Abstract
This study aimed to evaluate the effects of two rehabilitation systems in sites contaminated by Zn, Cu, Pb, and Cd on biological soil attributes [microbial biomass carbon (Cmic), basal and induced respiration, enzymatic activities, microorganism plate count, and bacterial and fungal community diversity and structure by denaturing gradient gel electrophoresis (DGGE)]. These systems (S1 and S2) consisted of excavation (trenching) and replacement of contaminated soil by uncontaminated soil in rows with Eucalyptus camaldulensis planting (S1-R and S2-R), free of understory vegetation (S1-BR), or completely covered by Brachiaria decumbens (S2-BR) in between rows. A contaminated, non-rehabilitated (NR) site and two contamination-free sites [Cerrado (C) and pasture (P)] were used as controls. Cmic, densities of bacteria and actinobacteria, and enzymatic activities (β-glucosidase, acid phosphatase, and urease) were significantly higher in the rehabilitated sites of system 2 (S2-R and S2-BR). However, even under high heavy metal contents (S1-R), the rehabilitation with eucalyptus was also effective. DGGE analysis revealed similarity in the diversity and structure of bacteria and fungi communities between rehabilitated sites and C site (uncontaminated). Principal component analysis showed clustering of rehabilitated sites (S2-R and S2-BR) with contamination-free sites, and S1-R was intermediate between the most and least contaminated sites, demonstrating that the soil replacement and revegetation improved the biological condition of the soil. The attributes that most explained these clustering were bacterial density, acid phosphatase, β-glucosidase, fungal and actinobacterial densities, Cmic, and induced respiration.
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Affiliation(s)
- Jessé Valentim dos Santos
- Agricultural Microbiology Postgraduate Program, Department of Biology, Federal University of Lavras, Postal Box 3037, CEP 37200-000, Lavras, MG, Brazil
| | - Maryeimy Varón-López
- Agricultural Microbiology Postgraduate Program, Department of Biology, Federal University of Lavras, Postal Box 3037, CEP 37200-000, Lavras, MG, Brazil
| | - Cláudio Roberto Fonsêca Sousa Soares
- Department of Soil Science-Sector of Biology, Microbiology and Biological Processes Laboratory, Federal University of Lavras, Postal Box 3037, CEP 37200-000, Lavras, MG, Brazil
- Sector of Biology, Soil Microbiology Laboratory, Department of Microbiology, Immunology and Parasitology, Federal University of Santa Catarina, Postal Box 476, Florianópolis, SC, 88040-900, Brazil
| | - Patrícia Lopes Leal
- Department of Soil Science-Sector of Biology, Microbiology and Biological Processes Laboratory, Federal University of Lavras, Postal Box 3037, CEP 37200-000, Lavras, MG, Brazil
| | - José Oswaldo Siqueira
- Department of Soil Science-Sector of Biology, Microbiology and Biological Processes Laboratory, Federal University of Lavras, Postal Box 3037, CEP 37200-000, Lavras, MG, Brazil
- Vale Technological Institute, Rua Boaventura da Silva, 955, Nazaré, Belem, PA, 60055-090, Brazil
| | - Fatima Maria de Souza Moreira
- Department of Soil Science-Sector of Biology, Microbiology and Biological Processes Laboratory, Federal University of Lavras, Postal Box 3037, CEP 37200-000, Lavras, MG, Brazil.
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Xue K, van Nostrand JD, Vangronsveld J, Witters N, Janssen JO, Kumpiene J, Siebielec G, Galazka R, Giagnoni L, Arenella M, Zhou JZ, Renella G. Management with willow short rotation coppice increase the functional gene diversity and functional activity of a heavy metal polluted soil. CHEMOSPHERE 2015; 138:469-477. [PMID: 26183942 DOI: 10.1016/j.chemosphere.2015.06.062] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2015] [Revised: 06/01/2015] [Accepted: 06/15/2015] [Indexed: 06/04/2023]
Abstract
We studied the microbial functional diversity, biochemical activity, heavy metals (HM) availability and soil toxicity of Cd, Pb and Zn contaminated soils, kept under grassland or short rotation coppice (SRC) to attenuate the risks associated with HM contamination and restore the soil ecological functions. Soil microbial functional diversity was analyzed by the GeoChip, a functional gene microarray containing probes for genes involved in nutrient cycling, metal resistance and stress response. Soil under SRC showed a higher abundance of microbial genes involved in C, N, P and S cycles and resistance to various HM, higher microbial biomass, respiration and enzyme activity rates, and lower HM availability than the grassland soil. The linkages between functional genes of soil microbial communities and soil chemical properties, HM availability and biochemical activity were also investigated. Soil toxicity and N, P and Pb availability were important factors in shaping the microbial functional diversity, as determined by CCA. We concluded that in HM contaminated soils the microbial functional diversity was positively influenced by SRC management through the reduction of HM availability and soil toxicity increase of nutrient cycling. The presented results can be important in predicting the long term environmental sustainability of plant-based soil remediation.
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Affiliation(s)
- K Xue
- Institute for Environmental Genomics and Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK 730722, USA
| | - J D van Nostrand
- Institute for Environmental Genomics and Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK 730722, USA
| | - J Vangronsveld
- Centre for Environmental Sciences, Hasselt University, Hasselt, Belgium
| | - N Witters
- Centre for Environmental Sciences, Hasselt University, Hasselt, Belgium
| | - J O Janssen
- Centre for Environmental Sciences, Hasselt University, Hasselt, Belgium
| | - J Kumpiene
- Department of Civil, Environmental and Natural Resources Engineering, Technical University of Luleå, Luleå, Sweden
| | - G Siebielec
- Institute of Soil Science and Plant Cultivation, State Research Institute, Pulawy, Poland
| | - R Galazka
- Institute of Soil Science and Plant Cultivation, State Research Institute, Pulawy, Poland
| | - L Giagnoni
- Department of Agrifood Production and Environmental Sciences, University of Florence, Italy
| | - M Arenella
- Department of Agrifood Production and Environmental Sciences, University of Florence, Italy
| | - J-Z Zhou
- Institute for Environmental Genomics and Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK 730722, USA
| | - G Renella
- Department of Agrifood Production and Environmental Sciences, University of Florence, Italy.
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Gutiérrez L, Garbisu C, Ciprián E, Becerril JM, Soto M, Etxebarria J, Madariaga JM, Antigüedad I, Epelde L. Application of ecological risk assessment based on a novel TRIAD-tiered approach to contaminated soil surrounding a closed non-sealed landfill. THE SCIENCE OF THE TOTAL ENVIRONMENT 2015; 514:49-59. [PMID: 25659305 DOI: 10.1016/j.scitotenv.2015.01.103] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2014] [Revised: 01/27/2015] [Accepted: 01/29/2015] [Indexed: 06/04/2023]
Abstract
The Ecological Risk Assessment (ERA) is a reliable tool for communicating risk to decision makers in a comprehensive and scientific evidence-based way. In this work, a site-specific ERA methodology based on the TRIAD approach was applied to contaminated soil surrounding a closed non-sealed landfill, as a case study to implement and validate such ERA methodology in the Basque Country (northern Spain). Initially, the procedure consisted of the application of a Parameter Selection Module aimed at selecting the most suitable parameters for the specific characteristics of the landfill contaminated soil, taking into consideration the envisioned land use, intended ecosystem services and nature of contaminants. Afterwards, the selected parameters were determined in soil samples collected from two sampling points located downstream of the abovementioned landfill. The results from these tests were normalized to make them comparable and integrable in a risk index. Then, risk assessment criteria were developed and applied to the two landfill contaminated soil samples. Although the lack of a proper control soil was evidenced, a natural land use was approved by the ERA (at Tier 2) for the two landfill contaminated soils. However, the existence of a potential future risk resulting from a hypothetical soil acidification must be considered.
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Affiliation(s)
- Laura Gutiérrez
- Energy and Environment Division, Tecnalia Research & Innovation, E-48160 Derio, Basque Country, Spain
| | - Carlos Garbisu
- Department of Ecology and Natural Resources, Soil Microbial Ecology Group, NEIKER-Tecnalia, Berreaga 1, E-48160 Derio, Basque Country, Spain
| | - Estela Ciprián
- Energy and Environment Division, Tecnalia Research & Innovation, E-48160 Derio, Basque Country, Spain
| | - José M Becerril
- Department of Plant Biology and Ecology, University of the Basque Country (UPV/EHU), P. O. Box 644, E-48080 Bilbao, Basque Country, Spain
| | - Manu Soto
- Research Centre for Experimental Marine Biology and Biotechnology (PIE-UPV/EHU), E-48620 Plentzia, Basque Country, Spain
| | - Javier Etxebarria
- GAIKER Technological Centre, IK4 Research Alliance, E-48170 Zamudio, Basque Country, Spain
| | - Juan M Madariaga
- Department of Analytical Chemistry, University of the Basque Country (UPV/EHU), P. O. Box 644, E-48080 Bilbao, Basque Country, Spain
| | - Iñaki Antigüedad
- Department of Geodynamics, University of the Basque Country (UPV/EHU), P. O. Box 644, E-48080 Bilbao, Basque Country, Spain
| | - Lur Epelde
- Department of Ecology and Natural Resources, Soil Microbial Ecology Group, NEIKER-Tecnalia, Berreaga 1, E-48160 Derio, Basque Country, Spain.
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Volchko Y, Norrman J, Rosén L, Norberg T. SF Box--a tool for evaluating the effects on soil functions in remediation projects. INTEGRATED ENVIRONMENTAL ASSESSMENT AND MANAGEMENT 2014; 10:566-575. [PMID: 24903441 DOI: 10.1002/ieam.1552] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/05/2014] [Revised: 04/21/2014] [Accepted: 05/30/2014] [Indexed: 06/03/2023]
Abstract
Although remediation is usually aimed at reducing the risks posed by contaminants to human health and the environment, it is also desirable that the remediated soil within future green spaces is capable of providing relevant ecological functions, e.g., basis for primary production. Yet while addressing a contamination problem by reducing contaminant concentration and/or amounts in the soil, the remedial action itself can lead to soil structure disturbances, decline in organic matter and nutrient deficiencies, and in turn affect a soil's capacity to carry out its ecological soil functions. This article presents the Soil Function Box (SF Box) tool that is aimed to facilitate integration of information from suggested soil quality indicators (SQIs) into a management process in remediation using a scoring method. The scored SQIs are integrated into a soil quality index corresponding to 1 of 5 classes. SF Box is applied to 2 cases from Sweden (Kvillebäcken and Hexion), explicitly taking into consideration uncertainties in the results by means of Monte Carlo simulations. At both sites the generated soil quality indices corresponded to a medium soil performance (soil class 3) with a high certainty. The main soil constraints at both Kvillebäcken and Hexion were associated with biological activity in the soil, as soil organisms were unable to supply plant-available N. At the Kvillebäcken site the top layer had a content of coarse fragment (ø > 2 mm) higher than 35%, indicating plant rooting limitations. At the Hexion site, the soil had limited amount of organic matter, thus poor aggregate stability and nutrient cycling potential. In contrast, the soil at Kvillebäcken was rich in organic matter. The soils at both sites were capable of storing a sufficient amount of water for soil organisms between precipitation events.
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Affiliation(s)
- Yevheniya Volchko
- Department of Civil and Environmental Engineering, Chalmers University of Technology, Gothenburg, Sweden
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Volchko Y, Norrman J, Rosén L, Bergknut M, Josefsson S, Söderqvist T, Norberg T, Wiberg K, Tysklind M. Using soil function evaluation in multi-criteria decision analysis for sustainability appraisal of remediation alternatives. THE SCIENCE OF THE TOTAL ENVIRONMENT 2014; 485-486:785-791. [PMID: 24529453 DOI: 10.1016/j.scitotenv.2014.01.087] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/28/2013] [Revised: 01/23/2014] [Accepted: 01/23/2014] [Indexed: 06/03/2023]
Abstract
Soil contamination is one of the major threats constraining proper functioning of the soil and thus provision of ecosystem services. Remedial actions typically only address the chemical soil quality by reducing total contaminant concentrations to acceptable levels guided by land use. However, emerging regulatory requirements on soil protection demand a holistic view on soil assessment in remediation projects thus accounting for a variety of soil functions. Such a view would require not only that the contamination concentrations are assessed and attended to, but also that other aspects are taking into account, thus addressing also physical and biological as well as other chemical soil quality indicators (SQIs). This study outlines how soil function assessment can be a part of a holistic sustainability appraisal of remediation alternatives using multi-criteria decision analysis (MCDA). The paper presents a method for practitioners for evaluating the effects of remediation alternatives on selected ecological soil functions using a suggested minimum data set (MDS) containing physical, biological and chemical SQIs. The measured SQIs are transformed into sub-scores by the use of scoring curves, which allows interpretation and the integration of soil quality data into the MCDA framework. The method is demonstrated at a study site (Marieberg, Sweden) and the results give an example of how soil analyses using the suggested MDS can be used for soil function assessment and subsequent input to the MCDA framework.
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Affiliation(s)
- Yevheniya Volchko
- Department of Civil and Environmental Engineering, Chalmers University of Technology, Sven Hultins gata 8, SE-41296 Gothenburg, Sweden.
| | - Jenny Norrman
- Department of Civil and Environmental Engineering, Chalmers University of Technology, Sven Hultins gata 8, SE-41296 Gothenburg, Sweden
| | - Lars Rosén
- Department of Civil and Environmental Engineering, Chalmers University of Technology, Sven Hultins gata 8, SE-41296 Gothenburg, Sweden
| | - Magnus Bergknut
- Department of Chemistry, Umeå University, SE-901 87 Umeå, Sweden; Envix, SE-906 20 Umeå, Sweden
| | - Sarah Josefsson
- Department of Aquatic Sciences and Assessment, Swedish University of Agricultural Sciences, Box 7050, SE-750 07 Uppsala, Sweden
| | - Tore Söderqvist
- Enveco Environmental Economics Consultancy, Måsholmstorget 3, SE-127 48 Skärholmen, Sweden
| | - Tommy Norberg
- Mathematical Sciences, Chalmers University of Technology & University of Gothenburg, SE-412 96 Gothenburg, Sweden
| | - Karin Wiberg
- Department of Aquatic Sciences and Assessment, Swedish University of Agricultural Sciences, Box 7050, SE-750 07 Uppsala, Sweden
| | - Mats Tysklind
- Department of Chemistry, Umeå University, SE-901 87 Umeå, Sweden
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Zhang Q, Zhu L, Wang J, Xie H, Wang J, Wang F, Sun F. Effects of fomesafen on soil enzyme activity, microbial population, and bacterial community composition. ENVIRONMENTAL MONITORING AND ASSESSMENT 2014; 186:2801-12. [PMID: 24362514 DOI: 10.1007/s10661-013-3581-9] [Citation(s) in RCA: 55] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/16/2013] [Accepted: 12/03/2013] [Indexed: 05/14/2023]
Abstract
Fomesafen is a diphenyl ether herbicide that has an important role in the removal of broadleaf weeds in bean and fruit tree fields. However, very little information is known about the effects of this herbicide on soil microbial community structure and activities. In the present study, laboratory experiments were conducted to examine the effects of different concentrations of fomesafen (0, 10, 100, and 500 μg/kg) on microbial community structure and activities during an exposure period of 60 days, using soil enzyme assays, plate counting, and denaturing gradient gel electrophoresis (DGGE). The results of enzymatic activity experiments showed that fomesafen had different stimulating effects on the activities of acid phosphatase, alkaline phosphatase, and dehydrogenase, with dehydrogenase being most sensitive to fomesafen. On the tenth day, urease activity was inhibited significantly after treatment of different concentrations of fomesafen; this inhibiting effect then gradually disappeared and returned to the control level after 30 days. Plate counting experiments indicated that the number of bacteria and actinomycetes increased in fomesafen-spiked soil relative to the control after 30 days of incubation, while fungal number decreased significantly after only 10 days. The DGGE results revealed that the bacterial community varied in response to the addition of fomesafen, and the intensity of these six bands was greater on day 10. Sequencing and phylogenetic analyses indicated that the six excised DGGE bands were closely related to Emticicia, Bacillus, and uncultured bacteria. After 10 days, the bacterial community exhibited no obvious change compared with the control. Throughout the experiment, we concluded that 0-500 μg/kg of fomesafen could not produce significant toxic effects on soil microbial community structure and activities.
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Affiliation(s)
- Qingming Zhang
- College of Chemistry and Pharmaceutical Sciences, Qingdao Agricultural University, Qingdao, 266109, China
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Epelde L, Becerril JM, Alkorta I, Garbisu C. Adaptive long-term monitoring of soil health in metal phytostabilization: ecological attributes and ecosystem services based on soil microbial parameters. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2014; 16:971-981. [PMID: 24933897 DOI: 10.1080/15226514.2013.810578] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
Phytostabilization is a promising option for the remediation of metal contaminated soils which requires the implementation of long-term monitoring programs. We here propose to incorporate the paradigm of "adaptive monitoring", which enables monitoring programs to evolve iteratively as new information emerges and research questions change, to metal phytostabilization. Posing good questions that cover the chemical, toxicological and ecological concerns associated to metal contaminated soils is critical for an efficient long-term phytostabilization monitoring program. Regarding the ecological concerns, soil microbial parameters are most valuable indicators of the effectiveness of metal phytostabilization processes in terms of recovery of soil health. We suggest to group soil microbial parameters in higher-level categories such as "ecological attributes" (vigor, organization, stability) or "ecosystem services" in order to facilitate interpretation and, most importantly, to provide long-term phytostabilization monitoring programs with the required stability through time against changes in techniques, methods, interests, etc. that will inevitably occur during the monitoring program. Finally, a Phytostabilization Monitoring Card, based on both ecological attributes and ecosystem services, for soil microbial properties is provided.
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Volchko Y, Norrman J, Bergknut M, Rosén L, Söderqvist T. Incorporating the soil function concept into sustainability appraisal of remediation alternatives. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2013; 129:367-376. [PMID: 23994579 DOI: 10.1016/j.jenvman.2013.07.025] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2011] [Revised: 04/22/2013] [Accepted: 07/26/2013] [Indexed: 06/02/2023]
Abstract
Soil functions are critical for ecosystem survival and thus for an ecosystem's provision of services to humans. This is recognized in the proposed EU Soil Framework Directive from 2006, which lists seven important soil functions and services to be considered in a soil management practice. Emerging regulatory requirements demand a holistic view on soil evaluation in remediation projects. This paper presents a multi-scale, structured and transparent approach for incorporating the soil function concept into sustainability appraisal of remediation alternatives using a set of ecological, socio-cultural and economic criteria. The basis for the presented approach is a conceptualization of the linkages between soil functions and ecosystem services connected to with the sustainability paradigm. The approach suggests using (1) soil quality indicators (i.e. physical, chemical and biological soil properties) for exploring the performance of soil functions at the site level, and (2) soil service indicators (i.e. value-related measurements) for evaluating the performance of services resulting from soil functions across all levels of the spatial scale. The suggested approach is demonstrated by application in a Multi-Criteria Decision Analysis (MCDA) framework for sustainability appraisals of remediation alternatives. Further, the possibilities of using soil quality indicators for soil function evaluation are explored by reviewing existing literature on potential negative and positive effects of remediation technologies on the functionality of the treated soil. The suggested approach for including the soil function concept in remediation projects is believed to provide a basis for better informed decisions that will facilitate efficient management of contaminated land and to meet emerging regulatory requirements on soil protection.
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Affiliation(s)
- Yevheniya Volchko
- Department of Civil and Environmental Engineering, Chalmers University of Technology, SE-412 96 Göteborg, Sweden.
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Gheju M, Stelescu I. Chelant-assisted phytoextraction and accumulation of Zn by Zea mays. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2013; 128:631-636. [PMID: 23845956 DOI: 10.1016/j.jenvman.2013.06.017] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2013] [Revised: 06/05/2013] [Accepted: 06/08/2013] [Indexed: 06/02/2023]
Abstract
Zea mays plants were exposed to soils with concentrations of Zn ranging from 64 to 1800 mg kg(-1) dw, and the efficiency of three selected chelating agents (trisodium citrate (CI), disodium oxalate (OX) and disodium dihydrogen ethylene-diamine-tetraacetate (EDTA)) in enhancing metal phytoextraction was compared. Zn concentration in plant tissues increased in conjunction with the metal concentration of the soil. EDTA was found to be the most efficient chelating amendment, increasing concentrations of Zn in shoots from 88 mg kg(-1) dw, at 64 mg kg(-1) dw soil, to 8026 mg kg(-1) dw at 1800 mg kg(-1) dw soil. The overall orders of BCFs and TFs which resulted from this study are: EDTA > H2O > OX > CI, and EDTANa2 > OX > CI > H2O, respectively. The more effective uptake of Zn by plants for the control treatment (distilled water only) than for CI and OX was attributed to the neutral or slightly alkaline pH of the two chelant irrigation solutions. Instead, EDTA had a favorable effect on Zn uptake from soil due to its additive chelating and acidifying properties. Among the three chelants, only EDTA significantly increased the Zn phytoextraction potential of Z. mays, while CI and OX induced a low metal uptake from soil by plants. Although Z. mays has a lower Zn accumulation capacity than the hyperaccumulator Thlaspi caerulescens, it could be considered as a potential phytoremediator of soils with elevated Zn concentrations, especially when metal pollution extends to depths greater than 20 cm.
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Affiliation(s)
- M Gheju
- Politehnica University of Timisoara, Faculty of Industrial Chemistry and Environmental Engineering, Bd. V. Parvan Nr. 6, Et. 4, 300223 Timisoara, Romania.
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Rajkumar M, Prasad MNV, Swaminathan S, Freitas H. Climate change driven plant-metal-microbe interactions. ENVIRONMENT INTERNATIONAL 2013; 53:74-86. [PMID: 23347948 DOI: 10.1016/j.envint.2012.12.009] [Citation(s) in RCA: 97] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2012] [Revised: 12/13/2012] [Accepted: 12/20/2012] [Indexed: 05/24/2023]
Abstract
Various biotic and abiotic stress factors affect the growth and productivity of crop plants. Particularly, the climatic and/or heavy metal stress influence various processes including growth, physiology, biochemistry, and yield of crops. Climatic changes particularly the elevated atmospheric CO₂ enhance the biomass production and metal accumulation in plants and help plants to support greater microbial populations and/or protect the microorganisms against the impacts of heavy metals. Besides, the indirect effects of climatic change (e.g., changes in the function and structure of plant roots and diversity and activity of rhizosphere microbes) would lead to altered metal bioavailability in soils and concomitantly affect plant growth. However, the effects of warming, drought or combined climatic stress on plant growth and metal accumulation vary substantially across physico-chemico-biological properties of the environment (e.g., soil pH, heavy metal type and its bio-available concentrations, microbial diversity, and interactive effects of climatic factors) and plant used. Overall, direct and/or indirect effects of climate change on heavy metal mobility in soils may further hinder the ability of plants to adapt and make them more susceptible to stress. Here, we review and discuss how the climatic parameters including atmospheric CO₂, temperature and drought influence the plant-metal interaction in polluted soils. Other aspects including the effects of climate change and heavy metals on plant-microbe interaction, heavy metal phytoremediation and safety of food and feed are also discussed. This review shows that predicting how plant-metal interaction responds to altering climatic change is critical to select suitable crop plants that would be able to produce more yields and tolerate multi-stress conditions without accumulating toxic heavy metals for future food security.
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Affiliation(s)
- Mani Rajkumar
- National Environmental Engineering Research Institute-NEERI, CSIR Complex, Taramani, Chennai 600113, India.
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