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Mao M, Zhang Z, Zhao X, Geng H, Xue L, Liu D. Spatial Distribution and Enrichment Dynamics of Foodborne Norovirus in Oyster Tissues. Foods 2023; 13:128. [PMID: 38201156 PMCID: PMC10778453 DOI: 10.3390/foods13010128] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2023] [Revised: 12/23/2023] [Accepted: 12/26/2023] [Indexed: 01/12/2024] Open
Abstract
The prevalence of norovirus in oysters poses a significant threat to food safety, necessitating a comprehensive understanding of contamination patterns. This study explores the temporal dynamics of norovirus distribution in various oyster tissues over a contamination period ranging from 6 to 96 h. Four tissues-the gill, palp, digestive gland, and stomach-were subjected to systematic monitoring using RT-qPCR for absolute quantification. Results revealed rapid norovirus detection in all tissues six hours post-contamination, with subsequent variations in detection rates. Gill and digestive gland tissues exhibited a peak in detection at 12-24 h, aligning with the oyster's gastrointestinal circulatory system. The digestive gland, distinguished by specific enrichment and adsorption capabilities, demonstrated the highest virus concentration at 48 h. In contrast, the stomach displayed a reemergence of norovirus. Beyond 72 h, detection remained exclusive to the digestive gland, with Ct values comparable to earlier time points. At 96 h, a limited amount of norovirus was detected in the digestive gland, emphasizing the importance for timely monitoring. In addition to providing critical insights into optimal detection strategies, these findings highlight the time-related characteristics of norovirus contamination in oysters. The study identifies the digestive gland as a key target for reliable monitoring, providing valuable data to improve protocols for reducing hazards associated with oyster consumption and foodborne norovirus infections. This research contributes to the understanding of norovirus dynamics in oyster tissues and reinforces current efforts aimed at ensuring food safety and public health.
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Affiliation(s)
- Mao Mao
- State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou 510070, China; (M.M.); (Z.Z.)
- Shanghai International Travel Healthcare Center, Shanghai Customs District P. R. China, Shanghai 200335, China
| | - Zilei Zhang
- State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou 510070, China; (M.M.); (Z.Z.)
- Inspection and Quarantine Technology Communication Department, Shanghai Customs College, Shanghai 201204, China
| | - Xuchong Zhao
- Jinan Center for Disease Control and Prevention, Jinan 250021, China;
| | - Haoran Geng
- Shanghai-MOST Key Laboratory of Health and Disease Genomics, NHC Key Lab of Reproduction Regulation, Shanghai Institute for Biomedical and Pharmaceutical Technologies, Fudan University, Shanghai 200237, China;
| | - Liang Xue
- State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou 510070, China; (M.M.); (Z.Z.)
| | - Danlei Liu
- Shanghai International Travel Healthcare Center, Shanghai Customs District P. R. China, Shanghai 200335, China
- Shanghai-MOST Key Laboratory of Health and Disease Genomics, NHC Key Lab of Reproduction Regulation, Shanghai Institute for Biomedical and Pharmaceutical Technologies, Fudan University, Shanghai 200237, China;
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2
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Do Nascimento J, Bichet M, Challant J, Loutreul J, Petinay S, Perrotte D, Roman V, Cauvin E, Robin M, Ladeiro MP, La Carbona S, Blin JL, Gantzer C, Geffard A, Bertrand I, Boudaud N. Toward better monitoring of human noroviruses and F-specific RNA bacteriophages in aquatic environments using bivalve mollusks and passive samplers: A case study. WATER RESEARCH 2023; 243:120357. [PMID: 37549447 DOI: 10.1016/j.watres.2023.120357] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2023] [Revised: 07/12/2023] [Accepted: 07/13/2023] [Indexed: 08/09/2023]
Abstract
Monitoring pathogenic enteric viruses in continental and marine water bodies is essential to control the viral contamination of human populations. Human Noroviruses (NoV) are the main enteric viruses present in surface waters and foodstuff. In a context of global change, it is currently a challenge to improve the management of viral pollutions in aquatic environments and thereby limit the contamination of vulnerable water bodies or foodstuffs. The aim of this study is to evaluate the potential of specific accumulation systems for improving the detection of NoV in water bodies, compared to direct water analyses. Passive samplers (Zetapor filters) and three species of bivalve molluscan shellfish (BMS) (Dreissena polymorpha, Mytilus edulis and Crassostreas gigas) were used as accumulation systems to determine their performance in monitoring continental and marine waters for viruses. F-specific RNA bacteriophages (FRNAPH) were also analyzed since they are described as indicators of NoV hazard in many studies. During a one-year study in a specific area frequently affected by fecal pollution, twelve campaigns of exposure of passive samplers and BMS in continental and coastal waters were conducted. Using suitable methods, NoV (genome) and FRNAPH (infectious and genome) were detected in these accumulation systems and in water at the same time points to determine the frequency of detection but also to gain a better understanding of viral pollution in this area. The reliability of FRNAPH as a NoV indicator was also investigated. Our results clearly showed that BMS were significantly better than passive samplers and direct water analyses for monitoring NoV and FRNAPH contamination in water bodies. A dilution of viral pollution between the continental and the coastal area was observed and can be explained by the distance from the source of the pollution. Viral pollution is clearly greater during the winter period, and stakeholders should take this into consideration in their attempts to limit the contamination of food and water. A significant correlation was once again shown between NoV and FRNAPH genomes in BMS, confirming the reliability of FRNAPH as a NoV indicator. Moreover, a strong correlation was observed between NoV genomes and infectious FRNAPH, suggesting recent viral pollution since infectious particles had not been inactivated at sufficient levels in the environment. More generally, this study shows the value of using BMS as an active method for improving knowledge on the behavior of viral contamination in water bodies, the ranking of the contamination sources, and the vulnerability of downstream water bodies.
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Affiliation(s)
- Julie Do Nascimento
- Université de Reims Champagne-Ardenne, UMR-I 02 SEBIO, F-51687 Reims, France
| | - Marion Bichet
- Actalia, Food Safety Department, F-50000 Saint-Lô, France; LCPME, UMR 7564, CNRS, Université de Lorraine, F-54000 Nancy, France
| | - Julie Challant
- LCPME, UMR 7564, CNRS, Université de Lorraine, F-54000 Nancy, France
| | - Julie Loutreul
- Actalia, Food Safety Department, F-50000 Saint-Lô, France
| | | | | | - Véronica Roman
- LCPME, UMR 7564, CNRS, Université de Lorraine, F-54000 Nancy, France
| | - Elodie Cauvin
- LABEO Manche, Virology Department, F-50000 Saint-Lô, France
| | - Maëlle Robin
- Actalia, Food Safety Department, F-50000 Saint-Lô, France
| | | | | | | | | | - Alain Geffard
- Université de Reims Champagne-Ardenne, UMR-I 02 SEBIO, F-51687 Reims, France
| | - Isabelle Bertrand
- LCPME, UMR 7564, CNRS, Université de Lorraine, F-54000 Nancy, France
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3
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Cammarata RV, Barrios ME, Díaz SM, García López G, Fortunato MS, Torres C, Blanco Fernández MD, Mbayed VA. Assessment of Microbiological Quality of Fresh Vegetables and Oysters Produced in Buenos Aires Province, Argentina. FOOD AND ENVIRONMENTAL VIROLOGY 2021; 13:507-519. [PMID: 34449055 DOI: 10.1007/s12560-021-09496-8] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2020] [Accepted: 08/13/2021] [Indexed: 06/13/2023]
Abstract
Fresh vegetables and shellfish are prone to microbial contamination through irrigation or breeding with sewage-polluted waters, as well as by infected food handlers. In this work, we studied the presence of human and bovine polyomaviruses and human norovirus in fresh lettuces, strawberries and oysters produced in Buenos Aires province, Argentina. In oysters, we also investigated F-specific RNA bacteriophages, indicator Escherichia coli (E. coli) and pathogen bacteria of concern (Salmonella spp., Vibrio spp.). Within vegetables, we found viral contamination of human origin given the presence of human-associated polyomaviruses -MCPyV, HPyV6, JCPyV, and SV40- in lettuce and strawberry samples (16 and 10%, respectively), probably coming from irrigation waters and food handling. Among oysters, human (MCPyV, 4.2%) and bovine (BPyV1, 8.4%) polyomaviruses were detected even with low counts of E. coli. Bacteriophages (n = 3) and Salmonella spp. (n = 1) were also found, while Vibrio spp. was not detected. These results may indicate that the contamination in oysters comes from human and animal excreta, probably present in breeding waters. Norovirus was not detected in any food sample. To our knowledge, this is the first description of SV40 in lettuces and MCPyV and BPyV1 in oysters. The detection of different viral contaminants encourages further studies to evaluate the need for including viral indicators in microbiological standards. The identification of possible sources and routes of contamination using viral markers during routine microbiological controls, such as the polyomaviruses used in this work, would be useful to focus attention on the most hazardous stages of the food production chain.
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Affiliation(s)
- Robertina Viviana Cammarata
- Universidad de Buenos Aires, Facultad de Farmacia y Bioquímica. Instituto de Investigaciones en Bacteriología y Virología Molecular (IBaViM), Junín 956, 1113, Buenos Aires, Argentina
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Godoy Cruz 2290, 1425, Buenos Aires, Argentina
| | - Melina Elizabeth Barrios
- Universidad de Buenos Aires, Facultad de Farmacia y Bioquímica. Instituto de Investigaciones en Bacteriología y Virología Molecular (IBaViM), Junín 956, 1113, Buenos Aires, Argentina
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Godoy Cruz 2290, 1425, Buenos Aires, Argentina
| | - Sofía Micaela Díaz
- Universidad de Buenos Aires, Facultad de Farmacia y Bioquímica. Instituto de Investigaciones en Bacteriología y Virología Molecular (IBaViM), Junín 956, 1113, Buenos Aires, Argentina
- Agencia Nacional de Promoción Científica y Tecnológica, Ministerio de Ciencia y Tecnología, Godoy Cruz 2370, 1425, Buenos Aires, Argentina
| | - Guadalupe García López
- Universidad de Buenos Aires, Facultad de Farmacia y Bioquímica. Cátedra de Salud Pública e Higiene Ambiental, Junín 956, 1113, Buenos Aires, Argentina
| | - María Susana Fortunato
- Universidad de Buenos Aires, Facultad de Farmacia y Bioquímica. Cátedra de Salud Pública e Higiene Ambiental, Junín 956, 1113, Buenos Aires, Argentina
| | - Carolina Torres
- Universidad de Buenos Aires, Facultad de Farmacia y Bioquímica. Instituto de Investigaciones en Bacteriología y Virología Molecular (IBaViM), Junín 956, 1113, Buenos Aires, Argentina
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Godoy Cruz 2290, 1425, Buenos Aires, Argentina
| | - María Dolores Blanco Fernández
- Universidad de Buenos Aires, Facultad de Farmacia y Bioquímica. Instituto de Investigaciones en Bacteriología y Virología Molecular (IBaViM), Junín 956, 1113, Buenos Aires, Argentina
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Godoy Cruz 2290, 1425, Buenos Aires, Argentina
| | - Viviana Andrea Mbayed
- Universidad de Buenos Aires, Facultad de Farmacia y Bioquímica. Instituto de Investigaciones en Bacteriología y Virología Molecular (IBaViM), Junín 956, 1113, Buenos Aires, Argentina.
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Godoy Cruz 2290, 1425, Buenos Aires, Argentina.
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Varbanov M, Bertrand I, Philippot S, Retourney C, Gardette M, Hartard C, Jeulin H, Duval RE, Loret JF, Schvoerer E, Gantzer C. Somatic coliphages are conservative indicators of SARS-CoV-2 inactivation during heat and alkaline pH treatments. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 797:149112. [PMID: 34346352 PMCID: PMC8280372 DOI: 10.1016/j.scitotenv.2021.149112] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/23/2021] [Revised: 06/25/2021] [Accepted: 07/13/2021] [Indexed: 05/03/2023]
Abstract
High concentrations of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) genome have been described in wastewater and sewage sludge. It raises the question of the security of land sludge disposal practices during a pandemic. This study aimed to compare SARS-CoV-2's resistance to the main inactivating factors in sludge treatments, pH and heat, to that of native wastewater somatic coliphages. The latest can be easily used as an indicator of treatment efficiency in the field. The effects of heat treatment and pH on the survival of SARS-CoV-2 and somatic coliphages were investigated in simple media. The T90 value (time required for a 90% reduction in the virus or a 1 × log10 decline) at 50 °C was about 4 min for infectious SARS-CoV-2, and around 133 min for infectious somatic coliphages, with no decrease in SARS-CoV-2 genome. For infectious SARS-CoV-2, a slight decrease (<1 log10 unit) was observed at pH 9 or 10 for 10 min; the decrease was over 5 log10 units at pH 11. However, both SARS-CoV-2 genome and infectious somatic coliphages decreased by less than 1 log10 unit at pH 12. All thermal or pH-based treatments that can remove or significantly reduce infectious somatic coliphages (>4 log10) can be considered efficient treatments for infectious SARS-CoV-2. We concluded that somatic coliphages can be considered highly conservative and easy to use indicators of the inactivation of SARS-CoV-2 during treatments based on heat and alkaline pH.
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Affiliation(s)
- M Varbanov
- Université de Lorraine, CNRS, L2CM, F-54000 Nancy, France
| | - I Bertrand
- Université de Lorraine, CNRS, LCPME, F-54000 Nancy, France
| | - S Philippot
- Université de Lorraine, CNRS, L2CM, F-54000 Nancy, France
| | - C Retourney
- Université de Lorraine, CNRS, LCPME, F-54000 Nancy, France
| | - M Gardette
- Université de Lorraine, CNRS, LCPME, F-54000 Nancy, France
| | - C Hartard
- Université de Lorraine, CNRS, LCPME, F-54000 Nancy, France; Laboratoire de Virologie, CHRU de Nancy Brabois, F-54500 Vandœuvre-lès-Nancy, France
| | - H Jeulin
- Université de Lorraine, CNRS, LCPME, F-54000 Nancy, France; Laboratoire de Virologie, CHRU de Nancy Brabois, F-54500 Vandœuvre-lès-Nancy, France
| | - R E Duval
- Université de Lorraine, CNRS, L2CM, F-54000 Nancy, France
| | - J-F Loret
- SUEZ, CIRSEE, 38 rue du Président Wilson, F-78230 Le Pecq, France
| | - E Schvoerer
- Université de Lorraine, CNRS, LCPME, F-54000 Nancy, France; Laboratoire de Virologie, CHRU de Nancy Brabois, F-54500 Vandœuvre-lès-Nancy, France
| | - C Gantzer
- Université de Lorraine, CNRS, LCPME, F-54000 Nancy, France.
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5
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Gyawali P, Devane M, Scholes P, Hewitt J. Application of crAssphage, F-RNA phage and pepper mild mottle virus as indicators of human faecal and norovirus contamination in shellfish. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 783:146848. [PMID: 33865125 DOI: 10.1016/j.scitotenv.2021.146848] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2021] [Revised: 03/25/2021] [Accepted: 03/26/2021] [Indexed: 06/12/2023]
Abstract
Shellfish growing waters contaminated with inadequately treated human wastewater is a major source of norovirus in shellfish and poses a significant human health risk to consumers. Microbial source tracking (MST) markers have been widely used to identify the source (s) of faecal contamination in water but data are limited on their use for shellfish safety. This study evaluated the source specificity, sensitivity, occurrence and concentration of three viral MST markers i.e. cross-assembly phage (crAssphage), F-specific RNA bacteriophage genogroup II (F-RNA phage GII) and pepper mild mottle virus (PMMoV) using animal faeces (n = 119; 16 animal groups), influent wastewater (n = 12), effluent wastewater (n = 16) and shellfish (n = 33). CrAssphage, F-RNA phage GII and PMMoV had source specific values of 0.97, 0.99 and 0.91, respectively. The sensitivity of MST markers was confirmed by their 100% detection frequency in influent wastewaters. The frequency of detection in effluent wastewater ranged from 81.3% (F-RNA phage GII) to 100% (PMMoV). Concentration of F-RNA phage GII was one log10 (influent wastewater) and 2-3 log10 (effluent wastewater) lower than crAssphage and PMMoV, respectively. Despite lower prevalence of F-RNA phage GII in oysters and mussels compared to crAssphage and PMMoV, concentrations of the three MST markers were similar in mussels. As an indicator of norovirus contamination in shellfish, crAssphage and PMMoV had greater predictive sensitivity (100%; [95% CI; 81.5%-100%)]) and F-RNA phage GII had greater predictive specificity (93.3%; [95% CI; 68.1%-99.8%]). In contrast, crAssphage and F-RNA phage GII have similar accuracy for predicting norovirus in shellfish, however, PMMoV significantly overestimated its presence. Therefore, a combination of crAssphage and F-RNA phage GII analysis of shellfish could provide a robust estimation of the presence of human faecal and norovirus contamination.
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Affiliation(s)
- Pradip Gyawali
- Institute of Environmental Science and Research Ltd (ESR), Porirua 5240, New Zealand.
| | - Megan Devane
- Institute of Environmental Science and Research Ltd (ESR), Christchurch 8041, New Zealand
| | - Paula Scholes
- Institute of Environmental Science and Research Ltd (ESR), Christchurch 8041, New Zealand
| | - Joanne Hewitt
- Institute of Environmental Science and Research Ltd (ESR), Porirua 5240, New Zealand.
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6
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Bacteriophages as Fecal Pollution Indicators. Viruses 2021; 13:v13061089. [PMID: 34200458 PMCID: PMC8229503 DOI: 10.3390/v13061089] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2021] [Revised: 05/28/2021] [Accepted: 06/05/2021] [Indexed: 12/12/2022] Open
Abstract
Bacteriophages are promising tools for the detection of fecal pollution in different environments, and particularly for viral pathogen risk assessment. Having similar morphological and biological characteristics, bacteriophages mimic the fate and transport of enteric viruses. Enteric bacteriophages, especially phages infecting Escherichia coli (coliphages), have been proposed as alternatives or complements to fecal indicator bacteria. Here, we provide a general overview of the potential use of enteric bacteriophages as fecal and viral indicators in different environments, as well as the available methods for their detection and enumeration, and the regulations for their application.
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7
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Characterization of a novel group I F-specific RNA bacteriophage isolated from human stool. Arch Microbiol 2021; 203:4065-4072. [PMID: 34050782 DOI: 10.1007/s00203-021-02402-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2021] [Revised: 04/30/2021] [Accepted: 05/21/2021] [Indexed: 10/21/2022]
Abstract
A novel F-specific RNA bacteriophage (FRNAPH) YM1, affiliating to genogroup I (GI) of Levivirus, is isolated for the first time from human stool samples using double-layer agar plates with the Escherichia coli ATCC700891 as the host. The complete genomic sequence of YM1 is 3551 nt in length, obtained through next-generation sequencing, and contains four genes encoding for maturation protein, coat protein, lysis protein, and RNA-dependent RNA polymerase (RdRp). The genomic sequence of YM1 shares the highest similarity of 95.3% with that of a GI FRNAPH DL16 isolated from surface water of Great Bay. The YM1 possesses a non-enveloped, icosahedral virion of 23 ± 0.45 nm in diameter. One-step growth curve analysis shows that the burst time of YM1 is 30 min post-infection (p.i.) with the average burst size of 264 PFU/cell. The YM1 lyses only E. coli strains tested, revealing high host specificity. This newly discovered phage may serve as a candidate for viral indicator to monitor human enteric virus, especially norovirus, contamination in the environments.
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8
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Leduc A, Leclerc M, Challant J, Loutreul J, Robin M, Maul A, Majou D, Boudaud N, Gantzer C. F-Specific RNA Bacteriophages Model the Behavior of Human Noroviruses during Purification of Oysters: the Main Mechanism Is Probably Inactivation Rather than Release. Appl Environ Microbiol 2020; 86:e00526-20. [PMID: 32303551 PMCID: PMC7267196 DOI: 10.1128/aem.00526-20] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2020] [Accepted: 04/08/2020] [Indexed: 01/06/2023] Open
Abstract
Noroviruses (NoV) are responsible for many shellfish outbreaks. Purification processes may be applied to oysters before marketing to decrease potential fecal pollution. This step is rapidly highly effective in reducing Escherichia coli; nevertheless, the elimination of virus genomes has been described to be much slower. It is therefore important to identify (i) the purification conditions that optimize virus removal and (ii) the mechanism involved. To this end, the effects of oyster stress, nutrients, and the presence of a potential competitor to NoV adhesion during purification were investigated using naturally contaminated oysters. Concentrations of NoV (genomes) and of the viral indicator F-specific RNA bacteriophage (FRNAPH; genomes and infectious particles) were regularly monitored. No significant differences were observed under the test conditions. The decrease kinetics of both virus genomes were similar, again showing the potential of FRNAPH as an indicator of NoV behavior during purification. The T90 (time to reduce 90% of the initial titer) values were 47.8 days for the genogroup I NoV genome, 26.7 days for the genogroup II NoV genome, and 43.9 days for the FRNAPH-II genome. Conversely, monitoring of the viral genomes could not be used to determine the behavior of infectious viruses because the T90 values were more than two times lower for infectious FRNAPH (20.6 days) compared to their genomes (43.9 days). Finally, this study highlighted that viruses are primarily inactivated in oysters rather than released in the water during purification processes.IMPORTANCE This study provides new data about the behavior of viruses in oysters under purification processes and about their elimination mechanism. First, a high correlation has been observed between F-specific RNA bacteriophages of subgroup II (FRNAPH-II) and norovirus (NoV) in oysters impacted by fecal contamination when both are detected using molecular approaches. Second, when using reverse transcription-quantitative PCR and culture to detect FRNAPH-II genomes and infectious FRNAPH in oysters, respectively, it appears that genome detection provides limited information about the presence of infectious particles. The comparison of both genomes and infectious particles highlights that the main mechanism of virus elimination in oysters is inactivation. Finally, this study shows that none of the conditions tested modify virus removal.
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Affiliation(s)
- Alice Leduc
- Université de Lorraine, CNRS, LCPME, Nancy, France
- ACTALIA, Food Safety Department, Saint-Lô, France
| | | | | | | | - Maëlle Robin
- ACTALIA, Food Safety Department, Saint-Lô, France
| | - Armand Maul
- Université de Lorraine, CNRS, LIEC, Metz, France
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9
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Lee S, Suwa M, Shigemura H. Metagenomic Analysis of Infectious F-Specific RNA Bacteriophage Strains in Wastewater Treatment and Disinfection Processes. Pathogens 2019; 8:pathogens8040217. [PMID: 31684172 PMCID: PMC6963950 DOI: 10.3390/pathogens8040217] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2019] [Revised: 10/15/2019] [Accepted: 11/02/2019] [Indexed: 12/29/2022] Open
Abstract
F-specific RNA bacteriophages (FRNAPHs) can be used to indicate water contamination and the fate of viruses in wastewater treatment plants (WWTPs). However, the occurrence of FRNAPH strains in WWTPs is relatively unknown, whereas FRNAPH genotypes (GI–GIV) are well documented. This study investigated the diversity of infectious FRNAPH strains in wastewater treatment and disinfection processes using cell culture combined with next-generation sequencing (integrated culture–NGS (IC–NGS)). A total of 32 infectious strains belonging to FRNAPH GI (nine strains), GI-JS (two strains), GII (nine strains), GIII (seven strains), and GIV (five strains) were detected in wastewater samples. The strains of FRNAPH GI and GII exhibited greater resistance to wastewater treatment than those of GIII. The IC–NGS results in the disinfected samples successfully reflected the infectivity of FRNAPHs by evaluating the relationship between IC–NGS results and the integrated culture–reverse-transcription polymerase chain reaction combined with the most probable number assay, which can detect infectious FRNAPH genotypes. The diversity of infectious FRNAPH strains in the disinfected samples indicates that certain strains are more resistant to chlorine (DL52, GI-JS; T72, GII) and ultraviolet (T72, GII) disinfection. It is possible that investigating these disinfectant-resistant strains could reveal effective mechanisms of viral disinfection.
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Affiliation(s)
- Suntae Lee
- Innovative Materials and Resources Research Center, Public Works Research Institute, Ibaraki 305-8516, Japan.
| | - Mamoru Suwa
- Innovative Materials and Resources Research Center, Public Works Research Institute, Ibaraki 305-8516, Japan.
| | - Hiroyuki Shigemura
- Innovative Materials and Resources Research Center, Public Works Research Institute, Ibaraki 305-8516, Japan.
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10
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Robin M, Chassaing M, Loutreul J, de Rougemont A, Belliot G, Majou D, Gantzer C, Boudaud N. Effect of natural ageing and heat treatments on GII.4 norovirus binding to Histo-Blood Group Antigens. Sci Rep 2019; 9:15312. [PMID: 31653918 PMCID: PMC6814753 DOI: 10.1038/s41598-019-51750-4] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2019] [Accepted: 10/07/2019] [Indexed: 02/02/2023] Open
Abstract
Human noroviruses (HuNoVs) are the leading cause of viral foodborne outbreaks worldwide. To date, no available methods can be routinely used to detect infectious HuNoVs in foodstuffs. HuNoVs recognize Histo-Blood Group Antigens (HBGAs) through the binding pocket (BP) of capsid protein VP1, which promotes infection in the host cell. In this context, the suitability of human HBGA-binding assays to evaluate the BP integrity of HuNoVs was studied on GII.4 virus-like particles (VLPs) and GII.4 HuNoVs during natural ageing at 20 °C and heat treatments. Our results demonstrate that this approach may reduce the over-estimation of potential infectious HuNoVs resulting from solely using the genome detection, even though some limitations have been identified. The specificity of HBGA-binding to the BP is clearly dependent on the HGBA type (as previously evidenced) and the ionic strength of the media without disturbing such interactions. This study also provides new arguments regarding the ability of VLPs to mimic HuNoV behavior during inactivation treatments. The BP stability of VLPs was at least 4.3 fold lower than that of HuNoVs at 20 °C, whereas capsids of both particles were disrupted at 72 °C. Thus, VLPs are relevant surrogates of HuNoVs for inactivation treatments inducing significant changes in the capsid structure.
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Affiliation(s)
- Maëlle Robin
- Actalia, Food Safety Department, F-50000, Saint-Lô, France
| | - Manon Chassaing
- Actalia, Food Safety Department, F-50000, Saint-Lô, France
- LCPME, UMR 7564 CNRS, University of Lorraine, F-54601, Villers-lès-Nancy, France
| | - Julie Loutreul
- Actalia, Food Safety Department, F-50000, Saint-Lô, France
| | - Alexis de Rougemont
- National Reference Center for Gastroenteritis Viruses, Laboratory of Virology, University Hospital of Dijon, Dijon, F-21000, France
- UMR PAM A 02.102 Food and Microbiological Processes, University of Bourgogne Franche-Comté/AgroSup Dijon, Dijon, F-21000, France
| | - Gaël Belliot
- National Reference Center for Gastroenteritis Viruses, Laboratory of Virology, University Hospital of Dijon, Dijon, F-21000, France
- UMR PAM A 02.102 Food and Microbiological Processes, University of Bourgogne Franche-Comté/AgroSup Dijon, Dijon, F-21000, France
| | | | - Christophe Gantzer
- LCPME, UMR 7564 CNRS, University of Lorraine, F-54601, Villers-lès-Nancy, France
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11
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Walker DI, Cross LJ, Stapleton TA, Jenkins CL, Lees DN, Lowther JA. Assessment of the Applicability of Capsid-Integrity Assays for Detecting Infectious Norovirus Inactivated by Heat or UV Irradiation. FOOD AND ENVIRONMENTAL VIROLOGY 2019; 11:229-237. [PMID: 31165999 DOI: 10.1007/s12560-019-09390-4] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2018] [Accepted: 05/25/2019] [Indexed: 05/27/2023]
Abstract
Human noroviruses are the leading cause of viral gastroenteritis. In the absence of a practical culture technique for routine analysis of infectious noroviruses, several methods have been developed to discriminate between infectious and non-infectious viruses by removing non-viable viruses prior to analysis by RT-qPCR. In this study, two such methods (RNase and porcine gastric mucin) which were designed to remove viruses with compromised capsids (and therefore assumed to be non-viable), were assessed for their ability to quantify viable F-specific RNA bacteriophage (FRNAP) and human norovirus following inactivation by UV-C or heat. It was found that while both methods could remove a proportion of non-viable viruses, a large proportion of non-viable virus remained to be detected by RT-qPCR, leading to overestimations of the viable population. A model was then developed to determine the proportion of RT-qPCR detectable RNA from non-viable viruses that must be removed by such methods to reduce overestimation to acceptable levels. In most cases, nearly all non-viable virus must be removed to reduce the log overestimation of viability to within levels that might be considered acceptable (e.g. below 0.5 log10). This model could be applied when developing alternative pre-treatment methods to determine how well they should perform to be comparable to established infectivity assays.
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Affiliation(s)
- David I Walker
- Centre for Environment, Fisheries and Aquaculture Science (CEFAS), Weymouth, UK.
| | - Lisa J Cross
- Centre for Environment, Fisheries and Aquaculture Science (CEFAS), Weymouth, UK
| | - Tina A Stapleton
- Centre for Environment, Fisheries and Aquaculture Science (CEFAS), Weymouth, UK
| | - Connaire L Jenkins
- Centre for Environment, Fisheries and Aquaculture Science (CEFAS), Weymouth, UK
- School of Biosciences and Medicine, University of Surrey, Guildford, UK
| | - David N Lees
- Centre for Environment, Fisheries and Aquaculture Science (CEFAS), Weymouth, UK
| | - James A Lowther
- Centre for Environment, Fisheries and Aquaculture Science (CEFAS), Weymouth, UK
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12
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Razafimahefa RM, Ludwig-Begall LF, Thiry E. Cockles and mussels, alive, alive, oh-The role of bivalve molluscs as transmission vehicles for human norovirus infections. Transbound Emerg Dis 2019; 67 Suppl 2:9-25. [PMID: 31232515 DOI: 10.1111/tbed.13165] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2018] [Revised: 02/04/2019] [Accepted: 03/01/2019] [Indexed: 12/13/2022]
Abstract
Human noroviruses are recognized as the leading worldwide cause of sporadic and epidemic viral gastroenteritis, causing morbidity and mortality in impoverished developing countries and engendering enormous economic losses in developed countries. Transmitted faecal-orally, either via person-to-person contact, or by consumption of contaminated foods or water, norovirus outbreaks are often reported in institutional settings or in the context of communal dining. Bivalve molluscs, which accumulate noroviruses via filter feeding and are often eaten raw or insufficiently cooked, are a common food vehicle implicated in gastroenteritis outbreaks. The involvement of bivalve molluscs in norovirus outbreaks and epidemiology over the past two decades are reviewed. The authors describe how their physiology of filter feeding can render them concentrated vehicles of norovirus contamination in polluted environments and how high viral loads persist in molluscs even after application of depuration practices and typical food preparation steps. The global prevalence of noroviruses in bivalve molluscs as detected by different monitoring efforts is determined and the various methods currently utilized for norovirus extraction and detection from bivalve matrices described. An overview of gastroenteritis outbreaks affirmatively associated with norovirus-contaminated bivalve molluscs as reported in the past 18 years is also provided. Strategies for risk reduction in shellfish contamination and subsequent human infection are discussed.
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Affiliation(s)
- Ravo M Razafimahefa
- Veterinary Virology and Animal Viral Diseases, Department of Infectious and Parasitic Diseases, FARAH Research Centre, Faculty of Veterinary Medicine, Liège University, Liège, Belgium
| | - Louisa F Ludwig-Begall
- Veterinary Virology and Animal Viral Diseases, Department of Infectious and Parasitic Diseases, FARAH Research Centre, Faculty of Veterinary Medicine, Liège University, Liège, Belgium
| | - Etienne Thiry
- Veterinary Virology and Animal Viral Diseases, Department of Infectious and Parasitic Diseases, FARAH Research Centre, Faculty of Veterinary Medicine, Liège University, Liège, Belgium
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13
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Kingsley DH, Chen H, Annous BA, Meade GK. Evaluation of a Male-Specific DNA Coliphage Persistence Within Eastern Oysters (Crassostrea virginica). FOOD AND ENVIRONMENTAL VIROLOGY 2019; 11:120-125. [PMID: 30919239 DOI: 10.1007/s12560-019-09376-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2018] [Accepted: 03/07/2019] [Indexed: 06/09/2023]
Abstract
Male-specific coliphages (MSCs) are currently used to assess the virologic quality of shellfish-growing waters and to assess the impact of sewage release or adverse weather events on bivalve shellfish. Since MSC can have either DNA or RNA genomes, and most research has been performed exclusively on RNA MSCs, persistence of M13, a DNA MSC, was evaluated for its persistence as a function of time and temperature within Eastern oysters (Crassostrea virginica). Oysters were individually exposed to seawater containing a total of 1010 to 1012 pfu of M13 for 24 h at 15 °C followed by maintenance in tanks with as many as 21 oysters in continuously UV-sterilized water for up to 6 weeks at either 7, 15, or 22 °C. Two trials for each temperature were performed combining three shucked oysters per time point which were assayed by tenfold serial dilution in triplicate. Initial contamination levels averaged 106.9 and ranged from 106.0 to 107.0 of M13. For oysters held for 3 weeks, log10 reductions were 1.7, 3.8, and 4.2 log10 at 7, 15, and 22 °C, respectively. Oysters held at 7 and 15 °C for 6 weeks showed average reductions of 3.6 and 5.1 log10, respectively, but still retained infectious M13. In total, this work shows that DNA MSC may decline within shellfish in a manner analogous to RNA MSCs.
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Affiliation(s)
- David H Kingsley
- ARS, Food Safety & Intervention Technologies Research Unit, USDA, Delaware State University, Dover, DE, 19901, USA.
| | - Haiqiang Chen
- Department of Animal & Food Sciences, University of Delaware, Newark, DE, 19716-2150, USA
| | - Bassam A Annous
- ARS, ERRC, Food Safety & Intervention Technologies Research Unit, USDA, Wyndmoor, PA, 19038, USA
| | - Gloria K Meade
- ARS, Food Safety & Intervention Technologies Research Unit, USDA, Delaware State University, Dover, DE, 19901, USA
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14
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O'Sullivan L, Bolton D, McAuliffe O, Coffey A. Bacteriophages in Food Applications: From Foe to Friend. Annu Rev Food Sci Technol 2019; 10:151-172. [PMID: 30633564 DOI: 10.1146/annurev-food-032818-121747] [Citation(s) in RCA: 48] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Bacteriophages (phages) have traditionally been considered troublesome in food fermentations, as they are an important cause of starter-culture failure and trigger significant financial losses. In addition, from an evolutionary perspective, phages have contributed to the pathogenicity of many bacteria through transduction of virulence genes. In contrast, phages have played an important positive role in molecular biology. Moreover, these agents are increasingly being recognized as a potential solution to the detection and biocontrol of various undesirable bacteria, which cause either spoilage of food materials, decreased microbiological safety of foods, or infectious diseases in food animals and crops. The documented successful applications of phages and various phage-derived molecules are discussed in this review, as are many promising new uses that are currently under development.
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Affiliation(s)
- Lisa O'Sullivan
- Department of Biological Sciences, Cork Institute of Technology, Bishopstown, Ireland;
| | | | | | - Aidan Coffey
- Department of Biological Sciences, Cork Institute of Technology, Bishopstown, Ireland; .,APC Microbiome Institute, University College Cork, Cork, Ireland
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