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For: Dealtry S, Holmsgaard PN, Dunon V, Jechalke S, Ding GC, Krögerrecklenfort E, Heuer H, Hansen LH, Springael D, Zühlke S, Sørensen SJ, Smalla K. Shifts in abundance and diversity of mobile genetic elements after the introduction of diverse pesticides into an on-farm biopurification system over the course of a year. Appl Environ Microbiol 2014;80:4012-20. [PMID: 24771027 DOI: 10.1128/AEM.04016-13] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
Number Cited by Other Article(s)
1
Ren Z, Zhao Y, Han S, Li X. Regulatory strategies for inhibiting horizontal gene transfer of ARGs in paddy and dryland soil through computer-based methods. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023;856:159096. [PMID: 36181826 DOI: 10.1016/j.scitotenv.2022.159096] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2022] [Revised: 09/24/2022] [Accepted: 09/24/2022] [Indexed: 06/16/2023]
2
Sazykina M, Barabashin T, Konstantinova E, Al-Rammahi AAK, Pavlenko L, Khmelevtsova L, Karchava S, Klimova M, Mkhitaryan I, Khammami M, Sazykin I. Non-corresponding contaminants in marine surface sediments as a factor of ARGs spread in the Sea of Azov. MARINE POLLUTION BULLETIN 2022;184:114196. [PMID: 36219972 DOI: 10.1016/j.marpolbul.2022.114196] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2021] [Revised: 09/10/2022] [Accepted: 09/28/2022] [Indexed: 06/16/2023]
3
Papazlatani CV, Karas PA, Lampronikou E, Karpouzas DG. Using biobeds for the treatment of fungicide-contaminated effluents from various agro-food processing industries: Microbiome responses and mobile genetic element dynamics. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022;823:153744. [PMID: 35149062 DOI: 10.1016/j.scitotenv.2022.153744] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/10/2021] [Revised: 02/03/2022] [Accepted: 02/04/2022] [Indexed: 06/14/2023]
4
Broad Dissemination of Plasmids across Groundwater-Fed Rapid Sand Filter Microbiomes. mBio 2021;12:e0306821. [PMID: 34844427 PMCID: PMC8630534 DOI: 10.1128/mbio.03068-21] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]  Open
5
Long range PCR reveals the genetic cargo of IncP-1 plasmids in the complex microbial community of an on-farm biopurification system treating pesticide contaminated wastewater. Appl Environ Microbiol 2021;88:e0164821. [PMID: 34878814 DOI: 10.1128/aem.01648-21] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
6
Martini MC, Berini F, Ausec L, Casciello C, Vacca C, Pistorio M, Lagares A, Mandic-Mulec I, Marinelli F, Del Papa MF. Identification and Characterization of a Novel Plasmid-Encoded Laccase-Like Multicopper Oxidase from Ochrobactrum sp. BF15 Isolated from an On-Farm Bio-Purification System. Food Technol Biotechnol 2021;59:519-529. [PMID: 35136375 PMCID: PMC8753806 DOI: 10.17113/ftb.59.04.21.7253] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2021] [Accepted: 10/20/2021] [Indexed: 11/23/2022]  Open
7
Rios‐Miguel AB, Jetten MSM, Welte CU. Effect of concentration and hydraulic reaction time on the removal of pharmaceutical compounds in a membrane bioreactor inoculated with activated sludge. Microb Biotechnol 2021;14:1707-1721. [PMID: 34132479 PMCID: PMC8313272 DOI: 10.1111/1751-7915.13837] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2021] [Revised: 04/16/2021] [Accepted: 05/10/2021] [Indexed: 01/04/2023]  Open
8
Alanin KWS, Jørgensen TS, Browne PD, Petersen B, Riber L, Kot W, Hansen LH. An improved direct metamobilome approach increases the detection of larger-sized circular elements across kingdoms. Plasmid 2021;115:102576. [PMID: 33872684 DOI: 10.1016/j.plasmid.2021.102576] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2021] [Revised: 04/12/2021] [Accepted: 04/12/2021] [Indexed: 10/21/2022]
9
Sagova-Mareckova M, Boenigk J, Bouchez A, Cermakova K, Chonova T, Cordier T, Eisendle U, Elersek T, Fazi S, Fleituch T, Frühe L, Gajdosova M, Graupner N, Haegerbaeumer A, Kelly AM, Kopecky J, Leese F, Nõges P, Orlic S, Panksep K, Pawlowski J, Petrusek A, Piggott JJ, Rusch JC, Salis R, Schenk J, Simek K, Stovicek A, Strand DA, Vasquez MI, Vrålstad T, Zlatkovic S, Zupancic M, Stoeck T. Expanding ecological assessment by integrating microorganisms into routine freshwater biomonitoring. WATER RESEARCH 2021;191:116767. [PMID: 33418487 DOI: 10.1016/j.watres.2020.116767] [Citation(s) in RCA: 63] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/27/2020] [Revised: 12/14/2020] [Accepted: 12/19/2020] [Indexed: 06/12/2023]
10
Rios Miguel AB, Jetten MS, Welte CU. The role of mobile genetic elements in organic micropollutant degradation during biological wastewater treatment. WATER RESEARCH X 2020;9:100065. [PMID: 32984801 PMCID: PMC7494797 DOI: 10.1016/j.wroa.2020.100065] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2020] [Revised: 08/19/2020] [Accepted: 08/28/2020] [Indexed: 05/24/2023]
11
An R, Gowda M, Rey FE, Thibeault SL. Selective Bacterial Colonization of the Murine Larynx in a Gnotobiotic Model. Front Microbiol 2020;11:594617. [PMID: 33250883 PMCID: PMC7676279 DOI: 10.3389/fmicb.2020.594617] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2020] [Accepted: 10/08/2020] [Indexed: 01/04/2023]  Open
12
Storck V, Gallego S, Vasileiadis S, Hussain S, Béguet J, Rouard N, Baguelin C, Perruchon C, Devers-Lamrani M, Karpouzas DG, Martin-Laurent F. Insights into the Function and Horizontal Transfer of Isoproturon Degradation Genes (pdmAB) in a Biobed System. Appl Environ Microbiol 2020;86:e00474-20. [PMID: 32414799 PMCID: PMC7357488 DOI: 10.1128/aem.00474-20] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2020] [Accepted: 04/30/2020] [Indexed: 01/10/2023]  Open
13
Piergiacomo F, Borruso L, Ciccazzo S, Rizzi S, Zerbe S, Brusetti L. Environmental Distribution of AR Class 1 Integrons in Upper Adige River Catchment (Northern Italy). INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2020;17:ijerph17072336. [PMID: 32235649 PMCID: PMC7177501 DOI: 10.3390/ijerph17072336] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/31/2020] [Revised: 03/16/2020] [Accepted: 03/28/2020] [Indexed: 11/16/2022]
14
Eduardo-Correia B, Morales-Filloy H, Abad JP. Bacteria From the Multi-Contaminated Tinto River Estuary (SW, Spain) Show High Multi-Resistance to Antibiotics and Point to Paenibacillus spp. as Antibiotic-Resistance-Dissemination Players. Front Microbiol 2020;10:3071. [PMID: 31998281 PMCID: PMC6965355 DOI: 10.3389/fmicb.2019.03071] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2019] [Accepted: 12/19/2019] [Indexed: 12/31/2022]  Open
15
Rauseo J, Barra Caracciolo A, Ademollo N, Cardoni M, Di Lenola M, Gaze W, Stanton I, Grenni P, Pescatore T, Spataro F, Patrolecco L. Dissipation of the antibiotic sulfamethoxazole in a soil amended with anaerobically digested cattle manure. JOURNAL OF HAZARDOUS MATERIALS 2019;378:120769. [PMID: 31216500 DOI: 10.1016/j.jhazmat.2019.120769] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/11/2019] [Revised: 06/05/2019] [Accepted: 06/11/2019] [Indexed: 06/09/2023]
16
Allegrini M, Gomez EDV, Smalla K, Zabaloy MC. Suppression treatment differentially influences the microbial community and the occurrence of broad host range plasmids in the rhizosphere of the model cover crop Avena sativa L. PLoS One 2019;14:e0223600. [PMID: 31596877 PMCID: PMC6785065 DOI: 10.1371/journal.pone.0223600] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2019] [Accepted: 09/24/2019] [Indexed: 11/23/2022]  Open
17
Paul D, Chakraborty R, Mandal SM. Biocides and health-care agents are more than just antibiotics: Inducing cross to co-resistance in microbes. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2019;174:601-610. [PMID: 30875553 DOI: 10.1016/j.ecoenv.2019.02.083] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/11/2018] [Revised: 02/13/2019] [Accepted: 02/25/2019] [Indexed: 06/09/2023]
18
Dunon V, Bers K, Lavigne R, Top EM, Springael D. Targeted metagenomics demonstrates the ecological role of IS1071in bacterial community adaptation to pesticide degradation. Environ Microbiol 2018;20:4091-4111. [DOI: 10.1111/1462-2920.14404] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2017] [Revised: 08/09/2018] [Accepted: 09/06/2018] [Indexed: 11/26/2022]
19
Petroleum contamination and bioaugmentation in bacterial rhizosphere communities from Avicennia schaueriana. Braz J Microbiol 2018;49:757-769. [PMID: 29866608 PMCID: PMC6175736 DOI: 10.1016/j.bjm.2018.02.012] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2017] [Revised: 02/01/2018] [Accepted: 02/14/2018] [Indexed: 11/23/2022]  Open
20
Leite DCA, Salles JF, Calderon EN, van Elsas JD, Peixoto RS. Specific plasmid patterns and high rates of bacterial co-occurrence within the coral holobiont. Ecol Evol 2018;8:1818-1832. [PMID: 29435256 PMCID: PMC5792611 DOI: 10.1002/ece3.3717] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2017] [Revised: 11/15/2017] [Accepted: 11/16/2017] [Indexed: 12/24/2022]  Open
21
Na G, Lu Z, Gao H, Zhang L, Li Q, Li R, Yang F, Huo C, Yao Z. The effect of environmental factors and migration dynamics on the prevalence of antibiotic-resistant Escherichia coli in estuary environments. Sci Rep 2018;8:1663. [PMID: 29374235 PMCID: PMC5786026 DOI: 10.1038/s41598-018-20077-x] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2017] [Accepted: 01/10/2018] [Indexed: 12/14/2022]  Open
22
Gao H, Zhang L, Lu Z, He C, Li Q, Na G. Complex migration of antibiotic resistance in natural aquatic environments. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2018;232:1-9. [PMID: 28986079 DOI: 10.1016/j.envpol.2017.08.078] [Citation(s) in RCA: 46] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/29/2016] [Revised: 05/16/2017] [Accepted: 08/20/2017] [Indexed: 05/23/2023]
23
Martini MC, Quiroga MP, Pistorio M, Lagares A, Centrón D, Del Papa MF. Novel environmental class 1 integrons and cassette arrays recovered from an on-farm bio-purification plant. FEMS Microbiol Ecol 2017;94:4781311. [DOI: 10.1093/femsec/fix190] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2017] [Accepted: 12/27/2017] [Indexed: 11/12/2022]  Open
24
Bacteriome genetic structures of urban deposits are indicative of their origin and impacted by chemical pollutants. Sci Rep 2017;7:13219. [PMID: 29038457 PMCID: PMC5643393 DOI: 10.1038/s41598-017-13594-8] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2017] [Accepted: 09/26/2017] [Indexed: 12/27/2022]  Open
25
Holmsgaard PN, Dealtry S, Dunon V, Heuer H, Hansen LH, Springael D, Smalla K, Riber L, Sørensen SJ. Response of the bacterial community in an on-farm biopurification system, to which diverse pesticides are introduced over an agricultural season. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2017;229:854-862. [PMID: 28734695 DOI: 10.1016/j.envpol.2017.07.026] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/07/2017] [Revised: 07/06/2017] [Accepted: 07/08/2017] [Indexed: 06/07/2023]
26
Nour EH, Elsayed TR, Springael D, Smalla K. Comparable dynamics of linuron catabolic genes and IncP-1 plasmids in biopurification systems (BPSs) as a response to linuron spiking. Appl Microbiol Biotechnol 2017;101:4815-4825. [PMID: 28235988 DOI: 10.1007/s00253-017-8135-6] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2016] [Revised: 01/11/2017] [Accepted: 01/16/2017] [Indexed: 11/26/2022]
27
Orlek A, Stoesser N, Anjum MF, Doumith M, Ellington MJ, Peto T, Crook D, Woodford N, Walker AS, Phan H, Sheppard AE. Plasmid Classification in an Era of Whole-Genome Sequencing: Application in Studies of Antibiotic Resistance Epidemiology. Front Microbiol 2017;8:182. [PMID: 28232822 PMCID: PMC5299020 DOI: 10.3389/fmicb.2017.00182] [Citation(s) in RCA: 116] [Impact Index Per Article: 16.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2016] [Accepted: 01/25/2017] [Indexed: 11/20/2022]  Open
28
Application of biodegradation in mitigating and remediating pesticide contamination of freshwater resources: state of the art and challenges for optimization. Appl Microbiol Biotechnol 2016;100:7361-76. [DOI: 10.1007/s00253-016-7709-z] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2016] [Revised: 06/26/2016] [Accepted: 06/27/2016] [Indexed: 10/21/2022]
29
Martini MC, Wibberg D, Lozano M, Torres Tejerizo G, Albicoro FJ, Jaenicke S, van Elsas JD, Petroni A, Garcillán-Barcia MP, de la Cruz F, Schlüter A, Pühler A, Pistorio M, Lagares A, Del Papa MF. Genomics of high molecular weight plasmids isolated from an on-farm biopurification system. Sci Rep 2016;6:28284. [PMID: 27321040 PMCID: PMC4913263 DOI: 10.1038/srep28284] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2016] [Accepted: 05/31/2016] [Indexed: 12/02/2022]  Open
30
Plasmid Detection, Characterization, and Ecology. Microbiol Spectr 2016;3:PLAS-0038-2014. [PMID: 26104560 DOI: 10.1128/microbiolspec.plas-0038-2014] [Citation(s) in RCA: 88] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]  Open
31
Ma Y, Metch JW, Yang Y, Pruden A, Zhang T. Shift in antibiotic resistance gene profiles associated with nanosilver during wastewater treatment. FEMS Microbiol Ecol 2016;92:fiw022. [DOI: 10.1093/femsec/fiw022] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/27/2016] [Indexed: 11/13/2022]  Open
32
Sun M, Ye M, Wu J, Feng Y, Shen F, Tian D, Liu K, Hu F, Li H, Jiang X, Yang L, Kengara FO. Impact of bioaccessible pyrene on the abundance of antibiotic resistance genes during Sphingobium sp.- and sophorolipid-enhanced bioremediation in soil. JOURNAL OF HAZARDOUS MATERIALS 2015;300:121-128. [PMID: 26164069 DOI: 10.1016/j.jhazmat.2015.06.065] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/11/2015] [Revised: 06/29/2015] [Accepted: 06/29/2015] [Indexed: 06/04/2023]
33
Dealtry S, Nour EH, Holmsgaard PN, Ding GC, Weichelt V, Dunon V, Heuer H, Hansen LH, Sørensen SJ, Springael D, Smalla K. Exploring the complex response to linuron of bacterial communities from biopurification systems by means of cultivation-independent methods. FEMS Microbiol Ecol 2015;92:fiv157. [DOI: 10.1093/femsec/fiv157] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/03/2015] [Indexed: 02/03/2023]  Open
34
Li X, Wang Y, Brown CJ, Yao F, Jiang Y, Top EM, Li H. Diversification of broad host range plasmids correlates with the presence of antibiotic resistance genes. FEMS Microbiol Ecol 2015;92:fiv151. [PMID: 26635412 DOI: 10.1093/femsec/fiv151] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/26/2015] [Indexed: 11/13/2022]  Open
35
Sun M, Ye M, Wu J, Feng Y, Wan J, Tian D, Shen F, Liu K, Hu F, Li H, Jiang X, Yang L, Kengara FO. Positive relationship detected between soil bioaccessible organic pollutants and antibiotic resistance genes at dairy farms in Nanjing, Eastern China. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2015;206:421-428. [PMID: 26256145 DOI: 10.1016/j.envpol.2015.07.022] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/18/2015] [Revised: 07/03/2015] [Accepted: 07/07/2015] [Indexed: 06/04/2023]
36
Dib JR, Wagenknecht M, Farías ME, Meinhardt F. Strategies and approaches in plasmidome studies-uncovering plasmid diversity disregarding of linear elements? Front Microbiol 2015;6:463. [PMID: 26074886 PMCID: PMC4443254 DOI: 10.3389/fmicb.2015.00463] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2014] [Accepted: 04/28/2015] [Indexed: 01/01/2023]  Open
37
Characterization of a collection of plasmid-containing bacteria isolated from an on-farm biopurification system used for pesticide removal. Plasmid 2015;80:16-23. [PMID: 25957823 DOI: 10.1016/j.plasmid.2015.05.001] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2014] [Revised: 04/24/2015] [Accepted: 05/01/2015] [Indexed: 11/21/2022]
38
Alexander J, Bollmann A, Seitz W, Schwartz T. Microbiological characterization of aquatic microbiomes targeting taxonomical marker genes and antibiotic resistance genes of opportunistic bacteria. THE SCIENCE OF THE TOTAL ENVIRONMENT 2015;512-513:316-325. [PMID: 25634736 DOI: 10.1016/j.scitotenv.2015.01.046] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/19/2014] [Revised: 01/12/2015] [Accepted: 01/18/2015] [Indexed: 05/29/2023]
39
Shintani M, Sanchez ZK, Kimbara K. Genomics of microbial plasmids: classification and identification based on replication and transfer systems and host taxonomy. Front Microbiol 2015;6:242. [PMID: 25873913 PMCID: PMC4379921 DOI: 10.3389/fmicb.2015.00242] [Citation(s) in RCA: 206] [Impact Index Per Article: 22.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2014] [Accepted: 03/12/2015] [Indexed: 12/21/2022]  Open
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Jørgensen TS, Kiil AS, Hansen MA, Sørensen SJ, Hansen LH. Current strategies for mobilome research. Front Microbiol 2015;5:750. [PMID: 25657641 PMCID: PMC4302988 DOI: 10.3389/fmicb.2014.00750] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2014] [Accepted: 12/10/2014] [Indexed: 11/30/2022]  Open
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Gillings MR, Gaze WH, Pruden A, Smalla K, Tiedje JM, Zhu YG. Using the class 1 integron-integrase gene as a proxy for anthropogenic pollution. ISME JOURNAL 2014;9:1269-79. [PMID: 25500508 PMCID: PMC4438328 DOI: 10.1038/ismej.2014.226] [Citation(s) in RCA: 790] [Impact Index Per Article: 79.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/13/2014] [Revised: 09/18/2014] [Accepted: 10/23/2014] [Indexed: 12/14/2022]
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