1
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Pérez-Alfocea F, Borghi M, Guerrero JJ, Jiménez AR, Jiménez-Gómez JM, Fernie AR, Bartomeus I. Pollinator-assisted plant phenotyping, selection, and breeding for crop resilience to abiotic stresses. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2024; 119:56-64. [PMID: 38581375 DOI: 10.1111/tpj.16748] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2023] [Revised: 03/13/2024] [Accepted: 03/19/2024] [Indexed: 04/08/2024]
Abstract
Food security is threatened by climate change, with heat and drought being the main stresses affecting crop physiology and ecosystem services, such as plant-pollinator interactions. We hypothesize that tracking and ranking pollinators' preferences for flowers under environmental pressure could be used as a marker of plant quality for agricultural breeding to increase crop stress tolerance. Despite increasing relevance of flowers as the most stress sensitive organs, phenotyping platforms aim at identifying traits of resilience by assessing the plant physiological status through remote sensing-assisted vegetative indexes, but find strong bottlenecks in quantifying flower traits and in accurate genotype-to-phenotype prediction. However, as the transport of photoassimilates from leaves (sources) to flowers (sinks) is reduced in low-resilient plants, flowers are better indicators than leaves of plant well-being. Indeed, the chemical composition and amount of pollen and nectar that flowers produce, which ultimately serve as food resources for pollinators, change in response to environmental cues. Therefore, pollinators' preferences could be used as a measure of functional source-to-sink relationships for breeding decisions. To achieve this challenging goal, we propose to develop a pollinator-assisted phenotyping and selection platform for automated quantification of Genotype × Environment × Pollinator interactions through an insect geo-positioning system. Pollinator-assisted selection can be validated by metabolic, transcriptomic, and ionomic traits, and mapping of candidate genes, linking floral and leaf traits, pollinator preferences, plant resilience, and crop productivity. This radical new approach can change the current paradigm of plant phenotyping and find new paths for crop redomestication and breeding assisted by ecological decisions.
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Affiliation(s)
| | | | - Juan José Guerrero
- Centro de Edafología y Biología Aplicada del Segura (CEBAS-CSIC), Murcia, Spain
| | | | | | - Alisdair R Fernie
- Max-Planck-Institute of Molecular Plant Physiology (MPIMP), Postdam-Golm, Germany
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2
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Montgomery J, Morran S, MacGregor DR, McElroy JS, Neve P, Neto C, Vila-Aiub MM, Sandoval MV, Menéndez AI, Kreiner JM, Fan L, Caicedo AL, Maughan PJ, Martins BAB, Mika J, Collavo A, Merotto A, Subramanian NK, Bagavathiannan MV, Cutti L, Islam MM, Gill BS, Cicchillo R, Gast R, Soni N, Wright TR, Zastrow-Hayes G, May G, Malone JM, Sehgal D, Kaundun SS, Dale RP, Vorster BJ, Peters B, Lerchl J, Tranel PJ, Beffa R, Fournier-Level A, Jugulam M, Fengler K, Llaca V, Patterson EL, Gaines TA. Current status of community resources and priorities for weed genomics research. Genome Biol 2024; 25:139. [PMID: 38802856 PMCID: PMC11129445 DOI: 10.1186/s13059-024-03274-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2023] [Accepted: 05/13/2024] [Indexed: 05/29/2024] Open
Abstract
Weeds are attractive models for basic and applied research due to their impacts on agricultural systems and capacity to swiftly adapt in response to anthropogenic selection pressures. Currently, a lack of genomic information precludes research to elucidate the genetic basis of rapid adaptation for important traits like herbicide resistance and stress tolerance and the effect of evolutionary mechanisms on wild populations. The International Weed Genomics Consortium is a collaborative group of scientists focused on developing genomic resources to impact research into sustainable, effective weed control methods and to provide insights about stress tolerance and adaptation to assist crop breeding.
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Affiliation(s)
- Jacob Montgomery
- Department of Agricultural Biology, Colorado State University, 1177 Campus Delivery, Fort Collins, CO, 80523, USA
| | - Sarah Morran
- Department of Agricultural Biology, Colorado State University, 1177 Campus Delivery, Fort Collins, CO, 80523, USA
| | - Dana R MacGregor
- Protecting Crops and the Environment, Rothamsted Research, Harpenden, Hertfordshire, UK
| | - J Scott McElroy
- Department of Crop, Soil, and Environmental Sciences, Auburn University, Auburn, AL, USA
| | - Paul Neve
- Department of Plant and Environmental Sciences, University of Copenhagen, Taastrup, Denmark
| | - Célia Neto
- Department of Plant and Environmental Sciences, University of Copenhagen, Taastrup, Denmark
| | - Martin M Vila-Aiub
- IFEVA-Conicet-Department of Ecology, University of Buenos Aires, Buenos Aires, Argentina
| | | | - Analia I Menéndez
- Department of Ecology, Faculty of Agronomy, University of Buenos Aires, Buenos Aires, Argentina
| | - Julia M Kreiner
- Department of Botany, The University of British Columbia, Vancouver, BC, Canada
| | - Longjiang Fan
- Institute of Crop Sciences, Zhejiang University, Hangzhou, China
| | - Ana L Caicedo
- Department of Biology, University of Massachusetts Amherst, Amherst, MA, USA
| | - Peter J Maughan
- Department of Plant and Wildlife Sciences, Brigham Young University, Provo, UT, USA
| | | | - Jagoda Mika
- Bayer AG, Weed Control Research, Frankfurt, Germany
| | | | - Aldo Merotto
- Department of Crop Sciences, Federal University of Rio Grande Do Sul, Porto Alegre, Rio Grande Do Sul, Brazil
| | - Nithya K Subramanian
- Department of Soil and Crop Sciences, Texas A&M University, College Station, TX, USA
| | | | - Luan Cutti
- Department of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, MI, USA
| | | | - Bikram S Gill
- Department of Plant Pathology, Kansas State University, Manhattan, KS, USA
| | - Robert Cicchillo
- Crop Protection Discovery and Development, Corteva Agriscience, Indianapolis, IN, USA
| | - Roger Gast
- Crop Protection Discovery and Development, Corteva Agriscience, Indianapolis, IN, USA
| | - Neeta Soni
- Crop Protection Discovery and Development, Corteva Agriscience, Indianapolis, IN, USA
| | - Terry R Wright
- Genome Center of Excellence, Corteva Agriscience, Johnston, IA, USA
| | | | - Gregory May
- Genome Center of Excellence, Corteva Agriscience, Johnston, IA, USA
| | - Jenna M Malone
- School of Agriculture, Food and Wine, University of Adelaide, Glen Osmond, South Australia, Australia
| | - Deepmala Sehgal
- Jealott's Hill International Research Centre, Syngenta Ltd, Bracknell, Berkshire, UK
| | - Shiv Shankhar Kaundun
- Jealott's Hill International Research Centre, Syngenta Ltd, Bracknell, Berkshire, UK
| | - Richard P Dale
- Jealott's Hill International Research Centre, Syngenta Ltd, Bracknell, Berkshire, UK
| | - Barend Juan Vorster
- Department of Plant and Soil Sciences, University of Pretoria, Pretoria, South Africa
| | - Bodo Peters
- Bayer AG, Weed Control Research, Frankfurt, Germany
| | | | - Patrick J Tranel
- Department of Crop Sciences, University of Illinois, Urbana, IL, USA
| | - Roland Beffa
- Senior Scientist Consultant, Herbicide Resistance Action Committee / CropLife International, Liederbach, Germany
| | | | - Mithila Jugulam
- Department of Agronomy, Kansas State University, Manhattan, KS, USA
| | - Kevin Fengler
- Genome Center of Excellence, Corteva Agriscience, Johnston, IA, USA
| | - Victor Llaca
- Genome Center of Excellence, Corteva Agriscience, Johnston, IA, USA
| | - Eric L Patterson
- Department of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, MI, USA
| | - Todd A Gaines
- Department of Agricultural Biology, Colorado State University, 1177 Campus Delivery, Fort Collins, CO, 80523, USA.
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3
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Frachon L, Schiestl FP. Rapid genomic evolution in Brassica rapa with bumblebee selection in experimental evolution. BMC Ecol Evol 2024; 24:7. [PMID: 38195402 PMCID: PMC10775529 DOI: 10.1186/s12862-023-02194-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2022] [Accepted: 12/20/2023] [Indexed: 01/11/2024] Open
Abstract
BACKGROUND Insect pollinators shape rapid phenotypic evolution of traits related to floral attractiveness and plant reproductive success. However, the underlying genomic changes remain largely unknown despite their importance in predicting adaptive responses to natural or to artificial selection. Based on a nine-generation experimental evolution study with fast cycling Brassica rapa plants adapting to bumblebees, we investigate the genomic evolution associated with the previously observed parallel phenotypic evolution. In this current evolve and resequencing (E&R) study, we conduct a genomic scan of the allele frequency changes along the genome in bumblebee-pollinated and hand-pollinated plants and perform a genomic principal component analysis (PCA). RESULTS We highlight rapid genomic evolution associated with the observed phenotypic evolution mediated by bumblebees. Controlling for genetic drift, we observe significant changes in allelic frequencies at multiple loci. However, this pattern differs according to the replicate of bumblebee-pollinated plants, suggesting putative non-parallel genomic evolution. Finally, our study underlines an increase in genomic variance implying the putative involvement of multiple loci in short-term pollinator adaptation. CONCLUSIONS Overall, our study enhances our understanding of the complex interactions between pollinator and plants, providing a stepping stone towards unravelling the genetic basis of plant genomic adaptation to biotic factors in the environment.
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Affiliation(s)
- Léa Frachon
- Department of Systematic and Evolutionary Botany, University of Zürich, Zürich, Switzerland.
| | - Florian P Schiestl
- Department of Systematic and Evolutionary Botany, University of Zürich, Zürich, Switzerland
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4
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de Santana SF, Santos VC, Lopes ÍS, Porto JAM, Mora-Ocampo IY, Sodré GA, Pirovani CP, Góes-Neto A, Pacheco LGC, Fonseca PLC, Costa MA, Aguiar ERGR. Mining Public Data to Investigate the Virome of Neglected Pollinators and Other Floral Visitors. Viruses 2023; 15:1850. [PMID: 37766257 PMCID: PMC10535300 DOI: 10.3390/v15091850] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2023] [Revised: 07/31/2023] [Accepted: 08/23/2023] [Indexed: 09/29/2023] Open
Abstract
This study reports the virome investigation of pollinator species and other floral visitors associated with plants from the south of Bahia: Aphis aurantii, Atrichopogon sp., Dasyhelea sp., Forcipomyia taiwana, and Trigona ventralis hoozana. Studying viruses in insects associated with economically important crops is vital to understand transmission dynamics and manage viral diseases that pose as threats for global food security. Using literature mining and public RNA next-generation sequencing data deposited in the NCBI SRA database, we identified potential vectors associated with Malvaceae plant species and characterized the microbial communities resident in these insects. Bacteria and Eukarya dominated the metagenomic analyses of all taxon groups. We also found sequences showing similarity to elements from several viral families, including Bunyavirales, Chuviridae, Iflaviridae, Narnaviridae, Orthomyxoviridae, Rhabdoviridae, Totiviridae, and Xinmoviridae. Phylogenetic analyses indicated the existence of at least 16 new viruses distributed among A. aurantii (3), Atrichopogon sp. (4), Dasyhelea sp. (3), and F. taiwana (6). No novel viruses were found for T. ventralis hoozana. For F. taiwana, the available libraries also allowed us to suggest possible vertical transmission, while for A. aurantii we followed the infection profile along the insect development. Our results highlight the importance of studying the virome of insect species associated with crop pollination, as they may play a crucial role in the transmission of viruses to economically important plants, such as those of the genus Theobroma, or they will reduce the pollination process. This information may be valuable in developing strategies to mitigate the spread of viruses and protect the global industry.
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Affiliation(s)
- Sabrina Ferreira de Santana
- Department of Biological Science, Center of Biotechnology and Genetics, Universidade Estadual de Santa Cruz, Ilhéus 45662-900, BA, Brazil; (S.F.d.S.)
| | - Vinícius Castro Santos
- Department of Biochemistry and Immunology, Universidade Federal de Minas Gerais, Belo Horizonte 31270-901, MG, Brazil (A.G.-N.)
| | - Ícaro Santos Lopes
- Department of Biochemistry and Immunology, Universidade Federal de Minas Gerais, Belo Horizonte 31270-901, MG, Brazil (A.G.-N.)
| | - Joel Augusto Moura Porto
- Department of Biological Science, Center of Biotechnology and Genetics, Universidade Estadual de Santa Cruz, Ilhéus 45662-900, BA, Brazil; (S.F.d.S.)
| | - Irma Yuliana Mora-Ocampo
- Department of Biological Science, Center of Biotechnology and Genetics, Universidade Estadual de Santa Cruz, Ilhéus 45662-900, BA, Brazil; (S.F.d.S.)
| | - George Andrade Sodré
- Department of Biological Science, Center of Biotechnology and Genetics, Universidade Estadual de Santa Cruz, Ilhéus 45662-900, BA, Brazil; (S.F.d.S.)
| | - Carlos Priminho Pirovani
- Department of Biological Science, Center of Biotechnology and Genetics, Universidade Estadual de Santa Cruz, Ilhéus 45662-900, BA, Brazil; (S.F.d.S.)
| | - Aristóteles Góes-Neto
- Department of Biochemistry and Immunology, Universidade Federal de Minas Gerais, Belo Horizonte 31270-901, MG, Brazil (A.G.-N.)
- Department of Microbiology, Institute of Biological Sciences, Universidade Federal de Minas Gerais, Belo Horizonte 31270-901, MG, Brazil
| | - Luis Gustavo Carvalho Pacheco
- Department of Biotechnology, Institute of Health Sciences, Universidade Federal da Bahia, Salvador 40231-300, BA, Brazil
| | - Paula Luize Camargos Fonseca
- Department of Biological Science, Center of Biotechnology and Genetics, Universidade Estadual de Santa Cruz, Ilhéus 45662-900, BA, Brazil; (S.F.d.S.)
- Department of Genetics, Institute of Biological Sciences, Universidade Federal de Minas Gerais, Belo Horizonte 31270-901, MG, Brazil
| | - Marco Antônio Costa
- Department of Biological Science, Center of Biotechnology and Genetics, Universidade Estadual de Santa Cruz, Ilhéus 45662-900, BA, Brazil; (S.F.d.S.)
| | - Eric Roberto Guimarães Rocha Aguiar
- Department of Biological Science, Center of Biotechnology and Genetics, Universidade Estadual de Santa Cruz, Ilhéus 45662-900, BA, Brazil; (S.F.d.S.)
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5
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Meng JG, Xu YJ, Wang WQ, Yang F, Chen SY, Jia PF, Yang WC, Li HJ. Central-cell-produced attractants control fertilization recovery. Cell 2023; 186:3593-3605.e12. [PMID: 37516107 DOI: 10.1016/j.cell.2023.06.024] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2022] [Revised: 03/13/2023] [Accepted: 06/26/2023] [Indexed: 07/31/2023]
Abstract
Animal fertilization relies on hundreds of sperm racing toward the egg, whereas, in angiosperms, only two sperm cells are delivered by a pollen tube to the female gametes (egg cell and central cell) for double fertilization. However, unsuccessful fertilization under this one-pollen-tube design can be detrimental to seed production and plant survival. To mitigate this risk, unfertilized-gamete-controlled extra pollen tube entry has been evolved to bring more sperm cells and salvage fertilization. Despite its importance, the underlying molecular mechanism of this phenomenon remains unclear. In this study, we report that, in Arabidopsis, the central cell secretes peptides SALVAGER1 and SALVAGER2 in a directional manner to attract pollen tubes when the synergid-dependent attraction fails or is terminated by pollen tubes carrying infertile sperm cells. Moreover, loss of SALs impairs the fertilization recovery capacity of the ovules. Therefore, this research uncovers a female gamete-attraction system that salvages seed production for reproductive assurance.
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Affiliation(s)
- Jiang-Guo Meng
- State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yin-Jiao Xu
- State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Wei-Qi Wang
- State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Fei Yang
- State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Shu-Yan Chen
- State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China
| | - Peng-Fei Jia
- State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China
| | - Wei-Cai Yang
- State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Hong-Ju Li
- State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China.
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6
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Wong DCJ, Pichersky E, Peakall R. Many different flowers make a bouquet: Lessons from specialized metabolite diversity in plant-pollinator interactions. CURRENT OPINION IN PLANT BIOLOGY 2023; 73:102332. [PMID: 36652780 DOI: 10.1016/j.pbi.2022.102332] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2022] [Revised: 12/04/2022] [Accepted: 12/08/2022] [Indexed: 06/10/2023]
Abstract
Flowering plants have evolved extraordinarily diverse metabolites that underpin the floral visual and olfactory signals enabling plant-pollinator interactions. In some cases, these metabolites also provide unusual rewards that specific pollinators depend on. While some metabolites are shared by most flowering plants, many have evolved in restricted lineages in response to the specific selection pressures encountered within different niches. The latter are designated as specialized metabolites. Recent investigations continue to uncover a growing repertoire of unusual specialized metabolites. Increased accessibility to cutting-edge multi-omics technologies (e.g. genome, transcriptome, proteome, metabolome) is now opening new doors to simultaneously uncover the molecular basis of their synthesis and their evolution across diverse plant lineages. Drawing upon the recent literature, this perspective discusses these aspects and, where known, their ecological and evolutionary relevance. A primer on omics-guided approaches to discover the genetic and biochemical basis of functional specialized metabolites is also provided.
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Affiliation(s)
- Darren C J Wong
- Ecology and Evolution, Research School of Biology, The Australian National University, Canberra, ACT, Australia.
| | - Eran Pichersky
- Department of Molecular, Cellular and Developmental Biology, University of Michigan, Ann Arbor, MI, United States
| | - Rod Peakall
- Ecology and Evolution, Research School of Biology, The Australian National University, Canberra, ACT, Australia
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7
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Shah S, Ilyas M, Li R, Yang J, Yang FL. Microplastics and Nanoplastics Effects on Plant-Pollinator Interaction and Pollination Biology. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2023; 57:6415-6424. [PMID: 37068375 DOI: 10.1021/acs.est.2c07733] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/19/2023]
Abstract
Microplastics and nanoplastics (MNPs) contamination is an emerging environmental and public health concern, and these particles have been reported both in aquatic and terrestrial ecosystems. Recent studies have expanded our understanding of the adverse effects of MNPs pollution on human, terrestrial, and aquatic animals, insects, and plants. In this perspective, we describe the adverse effects of MNPs particles on pollinator and plant health and discuss the mechanisms by which MNPs disrupt the pollination process. We discuss the evidence and integrate transcriptome studies to investigate the negative effects of MNPs on the molecular biology of pollination, which may cause delay or inhibit the pollination services. We conclude by addressing challenges to plant-pollinator health from MNPs pollution and argue that such harmful effects disrupt the communication between plant and pollinator for a successful pollination process.
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Affiliation(s)
- Sakhawat Shah
- Hubei Key Laboratory of Insect Resources Utilization and Sustainable Pest Management, College of Plant Science and Technology, Huazhong Agricultural University, 430070 Wuhan, Hubei, People's Republic of China
| | - Muhammad Ilyas
- CAS Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, 666316 Menglun, China
- Chinese Academy of Sciences, 100045 Beijing, China
| | - Rui Li
- Hubei Key Laboratory of Insect Resources Utilization and Sustainable Pest Management, College of Plant Science and Technology, Huazhong Agricultural University, 430070 Wuhan, Hubei, People's Republic of China
| | - Jie Yang
- CAS Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, 666316 Menglun, China
| | - Feng-Lian Yang
- Hubei Key Laboratory of Insect Resources Utilization and Sustainable Pest Management, College of Plant Science and Technology, Huazhong Agricultural University, 430070 Wuhan, Hubei, People's Republic of China
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8
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Cao L, Hmimsa Y, El Fatehi S, Buatois B, Dubois MP, Le Moigne M, Hossaert-McKey M, Aumeeruddy-Thomas Y, Bagnères AG, Proffit M. Floral scent of the Mediterranean fig tree: significant inter-varietal difference but strong conservation of the signal responsible for pollinator attraction. Sci Rep 2023; 13:5642. [PMID: 37024518 PMCID: PMC10079669 DOI: 10.1038/s41598-023-32450-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2023] [Accepted: 03/28/2023] [Indexed: 04/08/2023] Open
Abstract
For thousands of years, humans have domesticated different plants by selecting for particular characters, often affecting less-known traits, including the volatile organic compounds (VOCs) emitted by these plants for defense or reproduction. The fig tree Ficus carica has a very wide range of varieties in the Mediterranean region and is selected for its traits affecting fruits, including pollination, but the effect of human-driven diversification on the VOCs emitted by the receptive figs to attract their pollinator (Blastophaga psenes) is not known. In the present study, VOCs from receptive figs of eight varieties in northern Morocco, were collected at different times within the manual pollination period and analyzed by gas chromatography-mass spectrometry. Genetic analyses using microsatellite loci were performed on the same varieties. Despite strong inter-varietal differences in the quantity and relative proportions of all VOCs, the relative proportions of the four pollinator-attractive VOCs showed limited variation among varieties. There was no significant correlation between genetic markers and chemical profiles of the different varieties. While diversification driven by humans has led to differences between varieties in VOC profiles, this paper suggests that throughout the process of domestication and varietal diversification, stabilizing selection has maintained a strong signal favoring pollinator attraction.
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Affiliation(s)
- Li Cao
- CEFE, CNRS/University of Montpellier/EPHE/IRD (UMR 5175), 1919 Route de Mende, 34293, Montpellier Cedex 5, France.
| | - Younes Hmimsa
- TEDAEEP Research Team, Abdelmalek Essaadi University (FPL), B. P. 745, Poste Principale, 92004, Larache, Morocco
| | - Salama El Fatehi
- TEDAEEP Research Team, Abdelmalek Essaadi University (FPL), B. P. 745, Poste Principale, 92004, Larache, Morocco
| | - Bruno Buatois
- CEFE, CNRS/University of Montpellier/EPHE/IRD (UMR 5175), 1919 Route de Mende, 34293, Montpellier Cedex 5, France
| | - Marie-Pierre Dubois
- CEFE, CNRS/University of Montpellier/EPHE/IRD (UMR 5175), 1919 Route de Mende, 34293, Montpellier Cedex 5, France
| | - Maïlys Le Moigne
- CEFE, CNRS/University of Montpellier/EPHE/IRD (UMR 5175), 1919 Route de Mende, 34293, Montpellier Cedex 5, France
| | - Martine Hossaert-McKey
- CEFE, CNRS/University of Montpellier/EPHE/IRD (UMR 5175), 1919 Route de Mende, 34293, Montpellier Cedex 5, France
| | - Yildiz Aumeeruddy-Thomas
- CEFE, CNRS/University of Montpellier/EPHE/IRD (UMR 5175), 1919 Route de Mende, 34293, Montpellier Cedex 5, France
| | - Anne-Geneviève Bagnères
- CEFE, CNRS/University of Montpellier/EPHE/IRD (UMR 5175), 1919 Route de Mende, 34293, Montpellier Cedex 5, France
| | - Magali Proffit
- CEFE, CNRS/University of Montpellier/EPHE/IRD (UMR 5175), 1919 Route de Mende, 34293, Montpellier Cedex 5, France.
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9
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Murphy AM, Jiang S, Elderfield JA, Pate AE, Halliwell C, Glover BJ, Cunniffe NJ, Carr JP. Biased pollen transfer by bumblebees favors the paternity of virus-infected plants in cross-pollination. iScience 2023; 26:106116. [PMID: 36994192 PMCID: PMC10040881 DOI: 10.1016/j.isci.2023.106116] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2022] [Revised: 11/14/2022] [Accepted: 01/30/2023] [Indexed: 03/19/2023] Open
Abstract
We used a green fluorescent protein marker gene for paternity analysis to determine if virus infection affected male reproductive success of tomato in bumblebee-mediated cross-pollination under glasshouse conditions. We found that bumblebees that visited flowers of infected plants showed a strong preference to subsequently visit flowers of non-infected plants. The behavior of the bumblebees to move toward non-infected plants after pollinating virus-infected plants appears to explain the paternity data, which demonstrate a statistically significant ∼10-fold bias for fertilization of non-infected plants with pollen from infected parents. Thus, in the presence of bumblebee pollinators, CMV-infected plants exhibit enhanced male reproductive success.
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Affiliation(s)
- Alex M. Murphy
- Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge, CB2 3EA United Kingdom
- Corresponding author
| | - Sanjie Jiang
- Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge, CB2 3EA United Kingdom
| | - James A.D. Elderfield
- Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge, CB2 3EA United Kingdom
| | - Adrienne E. Pate
- Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge, CB2 3EA United Kingdom
| | - Chay Halliwell
- Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge, CB2 3EA United Kingdom
| | - Beverley J. Glover
- Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge, CB2 3EA United Kingdom
| | - Nik J. Cunniffe
- Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge, CB2 3EA United Kingdom
| | - John P. Carr
- Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge, CB2 3EA United Kingdom
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10
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van der Niet T, Egan PA, Schlüter PM. Evolutionarily inspired solutions to the crop pollination crisis. Trends Ecol Evol 2023; 38:435-445. [PMID: 36737302 DOI: 10.1016/j.tree.2022.12.010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2022] [Revised: 12/16/2022] [Accepted: 12/21/2022] [Indexed: 02/04/2023]
Abstract
The global decline in insect diversity threatens pollination services, potentially impacting crop production and food security. Here, we argue that this looming pollination crisis is generally approached from an ecological standpoint, and that consideration of evolutionary principles offers a novel perspective. First, we outline that wild plant species have overcome 'pollination crises' throughout evolutionary history, and show how associated principles can be applied to crop pollination. We then highlight technological advances that can be used to adapt crop flowers for optimal pollination by local wild pollinators, especially by increasing generalization in pollination systems. Thus, synergies among fundamental evolutionary research, genetic engineering, and agro-ecological science provide a promising template for addressing a potential pollination crisis, complementing much-needed strategies focused on pollinator conservation.
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Affiliation(s)
- Timotheüs van der Niet
- Centre for Functional Biodiversity, School of Life Sciences, University of KwaZulu-Natal, P. Bag X01, 3209, Scottsville, Pietermaritzburg, South Africa.
| | - Paul A Egan
- Department of Plant Protection Biology, Swedish University of Agricultural Sciences, 230 53 Alnarp, Sweden
| | - Philipp M Schlüter
- Department of Plant Evolutionary Biology, Institute of Biology, University of Hohenheim, Garbenstraße 30, 70599 Stuttgart, Germany
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11
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Negoro S, Hirabayashi T, Iwasaki R, Torii KU, Uchida N. EPFL peptide signalling ensures robust self-pollination success under cool temperature stress by aligning the length of the stamen and pistil. PLANT, CELL & ENVIRONMENT 2023; 46:451-463. [PMID: 36419209 DOI: 10.1111/pce.14498] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2022] [Revised: 11/04/2022] [Accepted: 11/18/2022] [Indexed: 06/16/2023]
Abstract
Successful sexual reproduction of plants requires temperature-sensitive processes, and temperature stress sometimes causes developmental asynchrony between male and female reproductive tissues. In Arabidopsis thaliana, self-pollination occurs when the stamen and pistil lengths are aligned in a single flower so that pollens at the stamen tip are delivered to the stigma at the pistil tip. Although intercellular signalling acts in several reproduction steps, how signalling molecules, including secreted peptides, contribute to the synchronous growth of reproductive tissues remains limited. Here, we show that the mutant of the secreted peptide EPIDERMAL PATTERNING FACTOR LIKE 6 (EPFL6), which shows no phenotypes at a moderate temperature, fails in fruit production at a cool temperature due to insufficient elongation of stamens. EPFL6 is expressed in stamen filaments and promotes filament elongation to achieve the alignment of stamen and pistil lengths at a cool temperature. We also found that, at a moderate temperature, all EPFL6-subfamily genes are required for stamen elongation. Furthermore, we showed that ERECTA (ER), known as a common receptor for EPFL-family peptides, mediates the stamen-pistil growth coordination. Lastly, we provided evidence that modulation of ER activity rescues the reproduction failure caused by insufficient stamen elongation by realigning the stamen and pistil lengths.
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Affiliation(s)
- Satomi Negoro
- Center for Gene Research, Nagoya University, Nagoya, Japan
| | - Tomo Hirabayashi
- Institute of Transformative Bio-Molecules, Nagoya University, Nagoya, Japan
| | - Rie Iwasaki
- Institute of Transformative Bio-Molecules, Nagoya University, Nagoya, Japan
| | - Keiko U Torii
- Institute of Transformative Bio-Molecules, Nagoya University, Nagoya, Japan
- Department of Molecular Biosciences and Howard Hughes Medical Institute, The University of Texas at Austin, Austin, Texas, USA
| | - Naoyuki Uchida
- Center for Gene Research, Nagoya University, Nagoya, Japan
- Institute of Transformative Bio-Molecules, Nagoya University, Nagoya, Japan
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12
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Fattorini R, Ó’Maoiléidigh DS. Cis-regulatory variation expands the colour palette of the Brassicaceae. JOURNAL OF EXPERIMENTAL BOTANY 2022; 73:6511-6515. [PMID: 36322901 PMCID: PMC9629846 DOI: 10.1093/jxb/erac366] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
This article comments on: Ye S, Hua S, Ma T, Ma X, Chen Y, Wu L, Zhao L, Yi B, Ma C, Tu J, Shen J, Fu T, Wen J. 2022. Genetic and multi-omics analyses reveal BnaA07.PAP2In-184-317 as the key gene conferring anthocyanin-based color in Brassica napus flowers. Journal of Experimental Botany 73,6630–6645.
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Affiliation(s)
- Róisín Fattorini
- Institute of Systems, Molecular, and Integrative Biology, University of Liverpool, UK
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13
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Deng L, Wang T, Hu J, Yang X, Yao Y, Jin Z, Huang Z, Sun G, Xiong B, Liao L, Wang Z. Effects of Pollen Sources on Fruit Set and Fruit Characteristics of 'Fengtangli' Plum ( Prunus salicina Lindl.) Based on Microscopic and Transcriptomic Analysis. Int J Mol Sci 2022; 23:12959. [PMID: 36361746 PMCID: PMC9656660 DOI: 10.3390/ijms232112959] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2022] [Revised: 10/23/2022] [Accepted: 10/24/2022] [Indexed: 09/29/2023] Open
Abstract
Adequate yield and fruit quality are required in commercial plum production. The pollen source has been shown to influence fruit set and fruit characteristics. In this study, 'Siyueli', 'Fenghuangli' and 'Yinhongli' were used as pollinizers of 'Fengtangli' plum. Additionally, self-pollination, mixed pollination, and open pollination were performed. We characterized the differences in pollen tube growth, fruit set and fruit quality among pollination combinations. 'Fengtangli' flowers pollinated by 'Fenghuangli' had more pistils with pollen tubes penetrating the ovary and the highest fruit set rate, while the lowest fruit set rate was obtained from self-pollination. In self-pollinated flowers, 33% of pistils had at least one pollen tube reaching the ovary, implying that 'Fengtangli' is partially self-compatible. Pollen sources affected 'Fengtangli' fruit size, weight, pulp thickness, soluble solids, and sugar content. Transcriptome analysis of 'Siyueli'-pollinated and 'Yinhongli'-pollinated fruits revealed 2762 and 1018 differentially expressed genes (DEGs) involved in the response to different pollen sources. DEGs were enriched in plant hormone signal transduction, starch and sucrose metabolism, and MAPK signaling pathways. Our findings provide a reference for the selection of suitable pollinizers for 'Fengtangli' plum and promote future research on the metaxenia effect at the molecular level.
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Affiliation(s)
| | | | | | | | | | | | | | | | | | | | - Zhihui Wang
- College of Horticulture, Sichuan Agricultural University, Chengdu 611130, China
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14
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Huth S, Schwarz LM, Gorb SN. Quantifying the Influence of Pollen Aging on the Adhesive Properties of Hypochaeris radicata Pollen. INSECTS 2022; 13:811. [PMID: 36135512 PMCID: PMC9501020 DOI: 10.3390/insects13090811] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/06/2022] [Revised: 08/13/2022] [Accepted: 08/23/2022] [Indexed: 06/16/2023]
Abstract
Although pollination is one of the most crucial biological processes that ensures plant reproduction, its mechanisms are poorly understood. Especially in insect-mediated pollination, a pollen undergoes several attachment and detachment cycles when being transferred from anther to insect and from insect to stigma. The influence of the properties of pollen, insect and floral surfaces on the adhesion forces that mediate pollen transfer have been poorly studied. Here, we investigate the adhesive properties of Hypochaeris radicata pollen and their dependence on pollen aging by quantifying the pull-off forces from glass slides using centrifugation and atomic force microscopy. We found that the properties of the pollenkitt-the viscous, lipid liquid on the surface of most pollen grains-influences the forces necessary to detach a pollen from hydrophilic surfaces. Our results show that aged H. radicata pollen form weaker adhesions to hydrophilic glass than fresh ones. On the other hand, when a pollen grain ages in contact with glass, the adhesion between the two surfaces increases over time. This study shows for the first time the pollen aging effect on the pollination mechanism.
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Affiliation(s)
- Steven Huth
- Zoological Institute, Kiel University, Am Botanischen Garten 1-9, 24118 Kiel, Germany
| | - Lisa-Maricia Schwarz
- Grassland Ecology & Grassland Management, Department of Plant Nutrition, Institute of Crop Science and Resource Conservation (INRES), University of Bonn, Karlrobert-Kreiten-Str. 13, 53115 Bonn, Germany
- Biodiversity Research and Systematic Botany, Institute of Biochemistry and Biology, University of Potsdam, Maulbeerallee 1, 14469 Potsdam, Germany
| | - Stanislav N. Gorb
- Zoological Institute, Kiel University, Am Botanischen Garten 1-9, 24118 Kiel, Germany
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15
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Lin X, Zhang N, Song H, Lin K, Pang E. Population-specific, recent positive selection signatures in cultivated Cucumis sativus L. (cucumber). G3 GENES|GENOMES|GENETICS 2022; 12:6585339. [PMID: 35554526 PMCID: PMC9258548 DOI: 10.1093/g3journal/jkac119] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/17/2022] [Accepted: 05/03/2022] [Indexed: 11/13/2022]
Abstract
Population-specific, positive selection promotes the diversity of populations and drives local adaptations in the population. However, little is known about population-specific, recent positive selection in the populations of cultivated cucumber (Cucumis sativus L.). Based on a genomic variation map of individuals worldwide, we implemented a Fisher’s combination method by combining 4 haplotype-based approaches: integrated haplotype score (iHS), number of segregating sites by length (nSL), cross-population extended haplotype homozygosity (XP-EHH), and Rsb. Overall, we detected 331, 2,147, and 3,772 population-specific, recent positive selective sites in the East Asian, Eurasian, and Xishuangbanna populations, respectively. Moreover, we found that these sites were related to processes for reproduction, response to abiotic and biotic stress, and regulation of developmental processes, indicating adaptations to their microenvironments. Meanwhile, the selective genes associated with traits of fruits were also observed, such as the gene related to the shorter fruit length in the Eurasian population and the gene controlling flesh thickness in the Xishuangbanna population. In addition, we noticed that soft sweeps were common in the East Asian and Xishuangbanna populations. Genes involved in hard or soft sweeps were related to developmental regulation and abiotic and biotic stress resistance. Our study offers a comprehensive candidate dataset of population-specific, selective signatures in cultivated cucumber populations. Our methods provide guidance for the analysis of population-specific, positive selection. These findings will help explore the biological mechanisms of adaptation and domestication of cucumber.
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Affiliation(s)
- Xinrui Lin
- MOE Key Laboratory for Biodiversity Science and Ecological Engineering and Beijing Key Laboratory of Gene Resource and Molecular Development, College of Life Sciences, Beijing Normal University , Beijing 100875, China
| | - Ning Zhang
- MOE Key Laboratory for Biodiversity Science and Ecological Engineering and Beijing Key Laboratory of Gene Resource and Molecular Development, College of Life Sciences, Beijing Normal University , Beijing 100875, China
| | - Hongtao Song
- MOE Key Laboratory for Biodiversity Science and Ecological Engineering and Beijing Key Laboratory of Gene Resource and Molecular Development, College of Life Sciences, Beijing Normal University , Beijing 100875, China
| | - Kui Lin
- MOE Key Laboratory for Biodiversity Science and Ecological Engineering and Beijing Key Laboratory of Gene Resource and Molecular Development, College of Life Sciences, Beijing Normal University , Beijing 100875, China
| | - Erli Pang
- MOE Key Laboratory for Biodiversity Science and Ecological Engineering and Beijing Key Laboratory of Gene Resource and Molecular Development, College of Life Sciences, Beijing Normal University , Beijing 100875, China
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16
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de Souza LA, Souza B, Vasconcelos Pereira R, Morales MN, G. V. Peñaflor MF. Leaf beetle herbivory shapes the subsequent flower-visiting insect community and impacts plant reproduction. ECOSCIENCE 2022. [DOI: 10.1080/11956860.2022.2043004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
| | - Brígida Souza
- Department of Entomology, Universidade Federal de Lavras (UFLA), Lavras, Brazil
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17
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Cogni R, Quental TB, Guimarães PR. Ehrlich and Raven escape and radiate coevolution hypothesis at different levels of organization: Past and future perspectives. Evolution 2022; 76:1108-1123. [PMID: 35262199 DOI: 10.1111/evo.14456] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2021] [Revised: 02/02/2022] [Accepted: 02/22/2022] [Indexed: 01/21/2023]
Abstract
The classic paper by Ehrlich and Raven on coevolution will soon be 60 years old. Although they were not the first to develop the idea of coevolution, their thought-provoking paper certainly popularized this idea and inspired several generations of scientists interested in coevolution. Here, we describe some of their main contributions, quantitatively measure the impact of their seminal paper on different fields of research, and discuss how ideas related to their original paper might push the study of coevolution forward. To guide our discussion, we explore their original hypothesis into three research fields that are associated with distinct scales/levels of organization: (1) the genetic mechanisms underlying coevolutionary interactions; (2) the potential association between coevolutionary diversification and the organization of ecological networks; and (3) the micro- and macroevolutionary mechanisms and expected patterns under their hypothesis. By doing so, we discuss potentially overlooked aspects and future directions for the study of coevolutionary dynamics and diversification.
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Affiliation(s)
- Rodrigo Cogni
- Department of Ecology, University of São Paulo, São Paulo, SP, 05508-900, Brazil
| | - Tiago B Quental
- Department of Ecology, University of São Paulo, São Paulo, SP, 05508-900, Brazil
| | - Paulo R Guimarães
- Department of Ecology, University of São Paulo, São Paulo, SP, 05508-900, Brazil
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18
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Narbona E, del Valle JC, Arista M, Buide ML, Ortiz PL. Major Flower Pigments Originate Different Colour Signals to Pollinators. Front Ecol Evol 2021. [DOI: 10.3389/fevo.2021.743850] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022] Open
Abstract
Flower colour is mainly due to the presence and type of pigments. Pollinator preferences impose selection on flower colour that ultimately acts on flower pigments. Knowing how pollinators perceive flowers with different pigments becomes crucial for a comprehensive understanding of plant-pollinator communication and flower colour evolution. Based on colour space models, we studied whether main groups of pollinators, specifically hymenopterans, dipterans, lepidopterans and birds, differentially perceive flower colours generated by major pigment groups. We obtain reflectance data and conspicuousness to pollinators of flowers containing one of the pigment groups more frequent in flowers: chlorophylls, carotenoids and flavonoids. Flavonoids were subsequently classified in UV-absorbing flavonoids, aurones-chalcones and the anthocyanins cyanidin, pelargonidin, delphinidin, and malvidin derivatives. We found that flower colour loci of chlorophylls, carotenoids, UV-absorbing flavonoids, aurones-chalcones, and anthocyanins occupied different regions of the colour space models of these pollinators. The four groups of anthocyanins produced a unique cluster of colour loci. Interestingly, differences in colour conspicuousness among the pigment groups were almost similar in the bee, fly, butterfly, and bird visual space models. Aurones-chalcones showed the highest chromatic contrast values, carotenoids displayed intermediate values, and chlorophylls, UV-absorbing flavonoids and anthocyanins presented the lowest values. In the visual model of bees, flowers with UV-absorbing flavonoids (i.e., white flowers) generated the highest achromatic contrasts. Ours findings suggest that in spite of the almost omnipresence of floral anthocyanins in angiosperms, carotenoids and aurones-chalcones generates higher colour conspicuousness for main functional groups of pollinators.
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19
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Ke L, Wang Y, Schäfer M, Städler T, Zeng R, Fabian J, Pulido H, De Moraes CM, Song Y, Xu S. Transcriptomic Profiling Reveals Shared Signalling Networks Between Flower Development and Herbivory-Induced Responses in Tomato. FRONTIERS IN PLANT SCIENCE 2021; 12:722810. [PMID: 34630470 PMCID: PMC8493932 DOI: 10.3389/fpls.2021.722810] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2021] [Accepted: 08/18/2021] [Indexed: 06/02/2023]
Abstract
Most flowering plants must defend themselves against herbivores for survival and attract pollinators for reproduction. Although traits involved in plant defence and pollinator attraction are often localised in leaves and flowers, respectively, they will show a diffuse evolution if they share the same molecular machinery and regulatory networks. We performed RNA-sequencing to characterise and compare transcriptomic changes involved in herbivory-induced defences and flower development, in tomato leaves and flowers, respectively. We found that both the herbivory-induced responses and flower development involved alterations in jasmonic acid signalling, suppression of primary metabolism and reprogramming of secondary metabolism. We identified 411 genes that were involved in both processes, a number significantly higher than expected by chance. Genetic manipulation of key regulators of induced defences also led to the expression changes in the same genes in both leaves and flowers. Targeted metabolomic analysis showed that among closely related tomato species, jasmonic acid and α-tomatine are correlated in flower buds and herbivory-induced leaves. These findings suggest that herbivory-induced responses and flower development share a common molecular machinery and likely have coevolved in nature.
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Affiliation(s)
- Lanlan Ke
- Key Laboratory of Ministry of Education for Genetics, Breeding and Multiple Utilization of Crops, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou, China
- Institute for Evolution and Biodiversity, University of Münster, Münster, Germany
| | - Yangzi Wang
- Institute for Evolution and Biodiversity, University of Münster, Münster, Germany
| | - Martin Schäfer
- Institute for Evolution and Biodiversity, University of Münster, Münster, Germany
| | - Thomas Städler
- Plant Ecological Genetics Group, Institute of Integrative Biology, ETH Zürich, Zürich, Switzerland
| | - Rensen Zeng
- Key Laboratory of Ministry of Education for Genetics, Breeding and Multiple Utilization of Crops, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Jörg Fabian
- Institute for Pharmaceutical and Medicinal Chemistry, University of Münster, Münster, Germany
| | - Hannier Pulido
- Department of Environmental Systems Sciences, ETH Zürich, Zürich, Switzerland
| | | | - Yuanyuan Song
- Key Laboratory of Ministry of Education for Genetics, Breeding and Multiple Utilization of Crops, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Shuqing Xu
- Institute for Evolution and Biodiversity, University of Münster, Münster, Germany
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20
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Colicchio JM, Hamm LN, Verdonk HE, Kooyers NJ, Blackman BK. Adaptive and nonadaptive causes of heterogeneity in genetic differentiation across the Mimulus guttatus genome. Mol Ecol 2021; 30:6486-6507. [PMID: 34289200 DOI: 10.1111/mec.16087] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2020] [Revised: 07/08/2021] [Accepted: 07/19/2021] [Indexed: 11/29/2022]
Abstract
Genetic diversity becomes structured among populations over time due to genetic drift and divergent selection. Although population structure is often treated as a uniform underlying factor, recent resequencing studies of wild populations have demonstrated that diversity in many regions of the genome may be structured quite dissimilar to the genome-wide pattern. Here, we explored the adaptive and nonadaptive causes of such genomic heterogeneity using population-level, whole genome resequencing data obtained from annual Mimulus guttatus individuals collected across a rugged environment landscape. We found substantial variation in how genetic differentiation is structured both within and between chromosomes, although, in contrast to other studies, known inversion polymorphisms appear to serve only minor roles in this heterogeneity. In addition, much of the genome can be clustered into eight among-population genetic differentiation patterns, but only two of these clusters are particularly consistent with patterns of isolation by distance. By performing genotype-environment association analysis, we also identified genomic intervals where local adaptation to specific climate factors has accentuated genetic differentiation among populations, and candidate genes in these windows indicate climate adaptation may proceed through changes affecting specialized metabolism, drought resistance, and development. Finally, by integrating our findings with previous studies, we show that multiple aspects of plant reproductive biology may be common targets of balancing selection and that variants historically involved in climate adaptation among populations have probably also fuelled rapid adaptation to microgeographic environmental variation within sites.
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Affiliation(s)
- Jack M Colicchio
- Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, California, USA
| | - Lauren N Hamm
- Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, California, USA
| | - Hannah E Verdonk
- Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, California, USA
| | - Nicholas J Kooyers
- Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, California, USA.,Department of Biology, University of Virginia, Charlottesville, Virginia, USA.,Department of Biology, University of Louisiana, Lafayette, Lafayette, Louisiana, USA
| | - Benjamin K Blackman
- Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, California, USA.,Department of Biology, University of Virginia, Charlottesville, Virginia, USA
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21
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Yamagishi M. High promoter sequence variation in subgroup 6 members of R2R3-MYB genes is involved in different floral anthocyanin color patterns in Lilium spp. Mol Genet Genomics 2021; 296:1005-1015. [PMID: 34052932 DOI: 10.1007/s00438-021-01799-6] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2021] [Accepted: 05/25/2021] [Indexed: 11/26/2022]
Abstract
The spatially and temporally distinct expression of R2R3-MYB positive regulators is among the major mechanisms that create various anthocyanin color patterns in many flowers. However, we do not know how these positive regulators have gained different expression profiles. In the Asiatic hybrid lily 'Lollypop' (derived from the crosses of species belonging to Sinomartagon/Daurolirion section), MYB12 and MYB19S regulate the pigmentation at whole tepals and raised tepal spots, respectively. In the Oriental hybrid lily 'Sorbonne' (derived from the crosses of species belonging to the Archelirion section), MYB12 regulates both whole tepal and raised spot pigmentation. The genes have similar amino acid sequences with similar protein functions but exhibit different expression profiles in lily flowers. As promoters are among the most significant factors affecting gene expression profiles, their promoter sequences were determined in this study. The three genes had very different promoter sequences, and putative cis-regulatory elements were not conserved in numbers or order. To further confirm the promoter functions, tobacco plants were transformed with native promoter-driven MYB12 or MYB19S genes of 'Lollypop.' Expression levels of MYB12 were higher in corolla tubes than in lobes, while those of MYB19S were higher in corolla lobes than in tubes. Thus, the diverse promoter functions were likely to be the leading causes of their different expression profiles and generation of unique color patterns. Finally, the history of R2R3-MYB gene establishment during lily evolution was estimated using sequence data.
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Affiliation(s)
- Masumi Yamagishi
- Research Faculty of Agriculture, Hokkaido University, N9W9, Kita-ku, Sapporo, 060-8589, Japan.
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22
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Frachon L, Stirling SA, Schiestl FP, Dudareva N. Combining biotechnology and evolution for understanding the mechanisms of pollinator attraction. Curr Opin Biotechnol 2021; 70:213-219. [PMID: 34217123 DOI: 10.1016/j.copbio.2021.06.004] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2021] [Revised: 06/04/2021] [Accepted: 06/07/2021] [Indexed: 11/15/2022]
Abstract
Many flowering plants rely on pollinators for their reproductive success. Plant-pollinator interactions usually depend on a complex combination of traits based on a fine-tuned biosynthetic machinery, with many structural and regulatory genes involved. Yet, the physiological mechanisms in plants are the product of evolutionary processes. While evolution has been modifying flowers through millions of years, it is also a rapid process that can change plant traits within few generations. Here we discuss both mechanistic and evolutionary aspects of pollinator attraction. We also propose how latest advances in biotechnology and evolutionary studies, and their combination, will improve the elucidation of molecular mechanisms and evolutionary dynamics of pollinator attraction in changing environments.
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Affiliation(s)
- Léa Frachon
- Department of Systematic and Evolutionary Botany, University of Zurich, Zollikerstrasse 107, 8008, Zurich, Switzerland
| | - Shannon A Stirling
- Department of Biochemistry, Purdue University, 175 South University St., West Lafayette, IN 47907-2063, USA
| | - Florian P Schiestl
- Department of Systematic and Evolutionary Botany, University of Zurich, Zollikerstrasse 107, 8008, Zurich, Switzerland.
| | - Natalia Dudareva
- Department of Biochemistry, Purdue University, 175 South University St., West Lafayette, IN 47907-2063, USA; Purdue Center for Plant Biology, Purdue University, West Lafayette, IN 47907, USA.
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23
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Torices R, DeSoto L, Narbona E, Gómez JM, Pannell JR. Effects of the Relatedness of Neighbours on Floral Colour. Front Ecol Evol 2021. [DOI: 10.3389/fevo.2021.589781] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
The reproductive success of plants depends both on their phenotype and the local neighbourhood in which they grow. Animal-pollinated plants may benefit from increased visitation when surrounded by attractive conspecific individuals, via a “magnet effect.” Group attractiveness is thus potentially a public good that can be exploited by individuals, with selfish exploitation predicted to depend on genetic relatedness within the group. Petal colour is a potentially costly trait involved in floral signalling and advertising to pollinators. Here, we assessed whether petal colour was plastically sensitive to the relatedness of neighbours in the annual herb Moricandia moricandioides, which produces purple petals through anthocyanin pigment accumulation. We also tested whether petal colour intensity was related to nectar volume and sugar content in a context-dependent manner. Although both petal colour and petal anthocyanin concentration did not significantly vary with the neighbourhood configuration, plants growing with kin made a significantly higher investment in petal anthocyanin pigments as a result of the greater number and larger size of their flowers. Moreover the genetic relatedness of neighbours significantly modified the relationship between floral signalling and reward quantity: while focal plants growing with non-kin showed a positive relationship between petal colour and nectar production, plants growing with kin showed a positive relationship between number of flowers and nectar volume, and sugar content. The observed plastic response to group relatedness might have important effects on pollinator behaviour and visitation, with direct and indirect effects on plant reproductive success and mating patterns, at least in those plant species with patchy and genetically structured populations.
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24
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Byers KJRP, Bradshaw HD. Rational Design of a Novel Hawkmoth Pollinator Interaction in Mimulus Section Erythranthe. Front Ecol Evol 2021. [DOI: 10.3389/fevo.2021.658710] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Diversification of theca. 275,000 extant flowering plant species has been driven in large part by coevolution with animal pollinators. A recurring pattern of pollinator shifts from hummingbird to hawkmoth pollination has characterized plant speciation in many western North American plant taxa, but in the genusMimulus(monkeyflowers) sectionErythranthethe evolution of hawkmoth pollination from hummingbird-pollinated ancestors has not occurred. We manipulated two flower color loci and tested the attractiveness of the resulting four color phenotypes (red, yellow, pink, and white) to naïve hawkmoths (Manduca sexta). Hawkmoths strongly prefer derived colors (yellow, pink, white) over the ancestral red when choosing an initial flower to visit, and generally preferred derived colors when total visits and total visit time were considered, with no hawkmoth preferring ancestral red over derived colors. The simple flower color genetics underlying this innate pollinator preference suggests a potential path for speciation into an unfilled hawkmoth-pollinated niche inMimulussectionErythranthe, and the deliberate design of a hawkmoth-pollinated flower demonstrates a new, predictive method for studying pollination syndrome evolution.
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Xu B, Taylor L, Pucker B, Feng T, Glover BJ, Brockington SF. The land plant-specific MIXTA-MYB lineage is implicated in the early evolution of the plant cuticle and the colonization of land. THE NEW PHYTOLOGIST 2021; 229:2324-2338. [PMID: 33051877 DOI: 10.1111/nph.16997] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2020] [Accepted: 10/02/2020] [Indexed: 06/11/2023]
Abstract
The evolution of a lipid-based cuticle on aerial plant surfaces that protects against dehydration is considered a fundamental innovation in the colonization of the land by the green plants. However, key evolutionary steps in the early regulation of cuticle synthesis are still poorly understood, owing to limited studies in early-diverging land plant lineages. Here, we characterize a land plant specific subgroup 9 R2R3 MYB transcription factor MpSBG9, in the early-diverging land plant model Marchantia polymorpha, that is homologous to MIXTA proteins in vascular plants. The MpSBG9 functions as a key regulator of cuticle biosynthesis by preferentially regulating expression of orthologous genes for cutin formation, but not wax biosynthesis genes. The MpSBG9 also promotes the formation of papillate cells on the adaxial surface of M. polymorpha, which is consisitent with its canonical role in vascular plants. Our observations imply conserved MYB transcriptional regulation in the control of the cutin biosynthesis pathway as a core genetic network in the common ancestor of all land plants, implicating the land plant-specific MIXTA MYB lineage in the early origin and evolution of the cuticle.
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Affiliation(s)
- Bo Xu
- State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
- Department of Plant Sciences, University of Cambridge, Cambridge, CB2 3EA, UK
| | - Lin Taylor
- Department of Plant Sciences, University of Cambridge, Cambridge, CB2 3EA, UK
| | - Boas Pucker
- Department of Plant Sciences, University of Cambridge, Cambridge, CB2 3EA, UK
- Genetics and Genomics of Plants, Center for Biotechnology & Faculty of Biology, Bielefeld University, Bielefeld, 33615, Germany
- Molecular Genetics and Physiology of Plants, Faculty of Biology and Biotechnology, Ruhr-University Bochum, Universitätsstraße, Bochum, 44801, Germany
| | - Tao Feng
- CAS Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, 430047, China
| | - Beverley J Glover
- Department of Plant Sciences, University of Cambridge, Cambridge, CB2 3EA, UK
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Yamagishi M, Sakai M. The MicroRNA828/MYB12 Module Mediates Bicolor Pattern Development in Asiatic Hybrid Lily ( Lilium spp.) Flowers. FRONTIERS IN PLANT SCIENCE 2020; 11:590791. [PMID: 33193545 PMCID: PMC7661471 DOI: 10.3389/fpls.2020.590791] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/03/2020] [Accepted: 10/08/2020] [Indexed: 05/06/2023]
Abstract
Some Asiatic hybrid lily cultivars develop bicolor tepals, which consist of anthocyanin-pigmented upper halves and un-pigmented lower halves. MYB12, a subgroup 6 member of R2R3-MYB that positively regulates anthocyanin biosynthesis, is downregulated in the lower halves. However, MYB12 is usually expressed over entire tepal regions in numerous lily cultivars. Why MYB12 of bicolor cultivars exhibits variable expression spatially in a single tepal remains unclear. Since the lily MYB12 mRNA harbored a binding site for microRNA828 (miR828), the involvement of miR828 in variable spatial accumulation of MYB12 transcripts was evaluated. We analyzed the cleavage of MYB12 mRNA, mature miR828 accumulation, and MYB12 transcript-derived siRNA generation (microRNA-seq). In the bicolor tepals, mature miR828 was more highly accumulated in the lower halves than in the upper halves, and miR828-directed cleavage of MYB12 transcripts was observed predominantly in the lower halves. Moreover, the cleavage triggered the production of secondary siRNA from MYB12 transcripts, and the siRNAs were accumulated predominantly in the lower halves. Consequently, miR828 suppressed MYB12 transcript accumulation in the white region, and the miR828/MYB12 module participated in the development of bicolor patterns in lily flowers. The results present the first example of a microRNA mediating flower color patterns. Finally, we discuss the potential of miR828 creating flower color variations through suppressing the activity of subgroup 6 R2R3-MYB positive regulators in other species.
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Affiliation(s)
- Masumi Yamagishi
- Research Faculty of Agriculture, Graduate School of Agriculture, Hokkaido University, Sapporo, Japan
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