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Li H, Chen S, Wang M, Shi S, Zhao W, Xiong G, Zhou J, Qu J. Phosphate solubilization and plant growth properties are promoted by a lactic acid bacterium in calcareous soil. Appl Microbiol Biotechnol 2024; 108:24. [PMID: 38159115 DOI: 10.1007/s00253-023-12850-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2023] [Revised: 09/19/2023] [Accepted: 10/03/2023] [Indexed: 01/03/2024]
Abstract
On the basis of good phosphate solubilization ability of a lactic acid bacteria (LAB) strain Limosilactobacillus sp. LF-17, bacterial agent was prepared and applied to calcareous soil to solubilize phosphate and promote the growth of maize seedlings in this study. A pot experiment showed that the plant growth indicators, phosphorus content, and related enzyme activity of the maize rhizospheric soils in the LF treatment (treated with LAB) were the highest compared with those of the JP treatment (treated with phosphate solubilizing bacteria, PSB) and the blank control (CK). The types of organic acids in maize rhizospheric soil were determined through LC-MS, and 12 acids were detected in all the treatments. The abundant microbes belonged to the genera of Lysobacter, Massilia, Methylbacillus, Brevundimonas, and Limosilactobacillus, and they were beneficial to dissolving phosphate or secreting growth-promoting phytohormones, which were obviously higher in the LF and JP treatments than in CK as analyzed by high-throughput metagenomic sequencing methods. In addition, the abundance values of several enzymes, Kyoto Encyclopedia of Genes and Genomes (KEGG) orthology, and Carbohydrate-Active Enzymes (CAZys), which were related to substrate assimilation and metabolism, were the highest in the LF treatment. Therefore, aside from phosphate-solubilizing microorganisms, LAB can be used as environmentally friendly crop growth promoters in agriculture and provide another viable option for microbial fertilizers. KEY POINTS: • The inoculation of LAB strain effectively promoted the growth and chlorophyll synthesis of maize seedlings. • The inoculation of LAB strain significantly increased the TP content of maize seedlings and the AP concentration of the rhizosphere soil. • The inoculation of LAB strain increased the abundances of the dominant beneficial functional microbes in the rhizosphere soil.
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Affiliation(s)
- Haifeng Li
- College of Biological Engineering, Henan University of Technology, Zhengzhou, 450001, China.
| | - Siyuan Chen
- College of Biological Engineering, Henan University of Technology, Zhengzhou, 450001, China
| | - Mengyu Wang
- College of Biological Engineering, Henan University of Technology, Zhengzhou, 450001, China
| | - Shuoshuo Shi
- College of Biological Engineering, Henan University of Technology, Zhengzhou, 450001, China
| | - Wenjian Zhao
- College of Biological Engineering, Henan University of Technology, Zhengzhou, 450001, China
| | - Guoyang Xiong
- College of Biological Engineering, Henan University of Technology, Zhengzhou, 450001, China
| | - Jia Zhou
- College of Biological Engineering, Henan University of Technology, Zhengzhou, 450001, China
| | - Jianhang Qu
- College of Biological Engineering, Henan University of Technology, Zhengzhou, 450001, China
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Li Q, Ji H, Zhang C, Cui Y, Peng C, Chang SX, Cao T, Shi M, Li Y, Wang X, Zhang J, Song X. Biochar amendment alleviates soil microbial nitrogen and phosphorus limitation and increases soil heterotrophic respiration under long-term nitrogen input in a subtropical forest. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 951:175867. [PMID: 39216751 DOI: 10.1016/j.scitotenv.2024.175867] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2024] [Revised: 08/19/2024] [Accepted: 08/27/2024] [Indexed: 09/04/2024]
Abstract
Nitrogen (N) and carbon (C) inputs substantially affect soil microbial functions. However, the influences of long-term N and C additions on soil microbial resource limitation and heterotrophic respiration-fundamental microbial functional traits-remain unclear, impeding the understanding of how soil C dynamics respond to global change. In this study, the responses of soil microbial resource limitation and heterotrophic respiration (Rh) to 7-year N and biochar (BC) additions in a subtropical Moso bamboo (Phyllostachys edulis) plantation were investigated. We used eight treatments: Control, no N and BC addition; N30, 30 kg N (ammonium nitrate)·hm-2·a-1; N60, 60 kg N·hm-2·a-1; N90, 90 kg N·hm-2·a-1; BC20, 20 t BC (originating from Moso bamboo chips) hm-2; N30 + BC20, 30 kg N·hm-2·a-1 + 20 t BC hm-2; N60 + BC20, 60 kg N·hm-2·a-1 + 20 t BC hm-2; and N90 + BC20, 90 kg N·hm-2·a-1 + 20 t BC hm-2. Soil microbes were co-limited by N and phosphorus (P) and not limited by C in the control treatments. Long-term N addition enhanced soil microbial N and P limitation but significantly reduced soil Rh by 15.1 %-20.0 % relative to that in the control treatments. BC amendment alleviated soil microbial N and P limitation and significantly decreased C use efficiency by 10.9 %-42.1 % but increased Rh by 33.6 %-91.6 % in the long-term N-free and N-supplemented treatments (P < 0.05). Soil C- and N-acquisition enzyme activities were the dominant drivers of soil microbial resource limitation. Furthermore, microbial resource limitation was a more reliable predictor of Rh than soil resources or microbial biomass. The results suggested that long-term N and BC additions affect Rh by regulating microbial resource limitation, highlighting its significance in understanding soil C cycling under environmental change.
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Affiliation(s)
- Quan Li
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou 311300, China
| | - Hangxiang Ji
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou 311300, China
| | - Chao Zhang
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou 311300, China
| | - Yongxing Cui
- Institute of Biology, Freie Universität Berlin, Berlin 14195, Germany
| | - Changhui Peng
- Institute of Environment Sciences, Department of Biology Sciences, University of Quebec at Montreal, Montreal H3C3P8, Canada
| | - Scott X Chang
- Department of Renewable Resources, University of Alberta, Edmonton T6G2E3, Canada
| | - Tingting Cao
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou 311300, China
| | - Man Shi
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou 311300, China
| | - Yongfu Li
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou 311300, China
| | - Xiao Wang
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou 311300, China
| | - Junbo Zhang
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou 311300, China
| | - Xinzhang Song
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou 311300, China.
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Feng WL, Yang JL, Xu LG, Zhang GL. The spatial variations and driving factors of C, N, P stoichiometric characteristics of plant and soil in the terrestrial ecosystem. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 951:175543. [PMID: 39153619 DOI: 10.1016/j.scitotenv.2024.175543] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2024] [Revised: 07/30/2024] [Accepted: 08/13/2024] [Indexed: 08/19/2024]
Abstract
Carbon(C), nitrogen(N), and phosphorus(P) are crucial elements in the element cycling in the terrestrial ecosystems. In the past decades, the spatial patterns and driving mechanisms of plant and soil ecological stoichiometry have been hot topics in ecological geography. So far, many studies at different spatial and ecological scales have been conducted, but systematic review has not been reported to summarize the research status. In this paper, we tried to fill this gap by reviewing both the spatial variations and driving factors of C, N, P stoichiometric characteristics of plant and soil at regional to large scale. Additionally, we synthesized researches on the relationships between plant and soil C, N and P stoichiometric characteristics. At the global scale, plant C, N, P stoichiometric characteristics exhibited some trends along latitude and temperature gradient. Plant taxonomic classification was the main factor controlling the spatial variations of plant C, N and P stoichiometric characteristics. Climate factor and soil properties showed varying impacts on the spatial variations of plant C, N, P stoichiometric characteristics across different spatial scales. Soil C, N, P stoichiometric characteristics also varied along climate gradient at large scale. Their spatial variations resulted from the combined effects of climate, topography, soil properties, and vegetation characteristics at regional scale. The spatial pattern of soil C, N, P stoichiometric characteristics and the driving effects from environmental factors could be notably different among different ecosystems and vegetation types. Plant C:N:P was obviously higher than that of soil, and there existed a positive correlation between plant and soil C:N:P. Their trends along longitude and latitude were similar, but this correlation varied significantly among different vegetation types. Finally, based on the issues identified in this paper, we highlighted eight potential research themes for the future studies.
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Affiliation(s)
- Wen-Lan Feng
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Jin-Ling Yang
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Li-Gang Xu
- University of Chinese Academy of Sciences, Beijing 100049, China; Key Laboratory of Watershed Geographic Sciences, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing 210008, China
| | - Gan-Lin Zhang
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China; Key Laboratory of Watershed Geographic Sciences, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing 210008, China.
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Lian J, Li G, Zhang J, Massart S. Nitrogen fertilization affected microbial carbon use efficiency and microbial resource limitations via root exudates. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 950:174933. [PMID: 39043302 DOI: 10.1016/j.scitotenv.2024.174933] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2024] [Revised: 07/18/2024] [Accepted: 07/19/2024] [Indexed: 07/25/2024]
Abstract
Root exudation and its mediated nutrient cycling process driven by nitrogen (N) fertilizer can stimulate the plant availability of various soil nutrients, which is essential for microbial nutrient acquisition. However, the response of soil microbial resource limitations to long-term N fertilizer application rates in greenhouse vegetable systems has rarely been investigated. Therefore, we selected a 15-year greenhouse vegetable system, and investigated how N fertilizer application amount impacts on root carbon and nitrogen exudation rates, microbial resource limitations and microbial carbon use efficiency (CUEST). Four N treatments were determined: high (N3), medium (N2), low (N1), and a control without N fertilization (N0). Compared to the control (N0), the results showed that the root C exudation rates decreased significantly by 42.9 %, 57.3 % and 33.6 %, and the root N exudation rates decreased significantly by 29.7 %, 42.6 %, and 24.1 % under N1, N2, and N3 treatments, respectively. Interactions between fertilizer and plant roots altered microbial C, N, P limitations and CUEST; Microbial C and N/P limitations were positively correlated with root C and N exudation rates, negatively correlated with microbial CUEST. Random Forest analysis revealed that the root C and N exudation rates were key factors for soil microbial resource limitations and microbial CUEST. Through the structural equation model (SEM) analysis, soil NH4+ content had significant direct effects on the root exudation rates after long-term N fertilizer application. An increase in root exudation rates led to enhanced microbial resource limitations in the rhizosphere soils, potentially due to increased competition. This enhancement may reduce microbial carbon use efficiency (CUE), that is, microbial C turnover, thereby reducing soil C sequestration. Overall, this study highlights the critical role of root exudation rates in microbial resource limitations and CUE changes in plant-soil systems, and further improves our understanding of plant-microbial interactions.
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Affiliation(s)
- Jinshan Lian
- State Key Laboratory of Efficient Utilization of Arid and Semi-arid Arable Land in Northern China, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing 100081, China; Laboratory of Integrated and Urban Phytopathology, Gembloux Agro-Bio Tech, University of Liège, Passage des déportés 2, 5030 Gembloux, Belgium; National Center of Technology Innovation for Comprehensive Utilization of Saline-Alkali Land, Innovation for Comprehensive Utilization of Saline-Alkali Land, Shandong 257000, China
| | - Guihua Li
- State Key Laboratory of Efficient Utilization of Arid and Semi-arid Arable Land in Northern China, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing 100081, China; National Center of Technology Innovation for Comprehensive Utilization of Saline-Alkali Land, Innovation for Comprehensive Utilization of Saline-Alkali Land, Shandong 257000, China.
| | - Jianfeng Zhang
- State Key Laboratory of Efficient Utilization of Arid and Semi-arid Arable Land in Northern China, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing 100081, China; National Center of Technology Innovation for Comprehensive Utilization of Saline-Alkali Land, Innovation for Comprehensive Utilization of Saline-Alkali Land, Shandong 257000, China.
| | - Sébastien Massart
- Laboratory of Integrated and Urban Phytopathology, Gembloux Agro-Bio Tech, University of Liège, Passage des déportés 2, 5030 Gembloux, Belgium
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Zeng J, Li X, Song R, Xie H, Li X, Liu W, Liu H, Du Y, Xu M, Ren C, Yang G, Han X. Mechanisms of litter input changes on soil organic carbon dynamics: a microbial carbon use efficiency-based perspective. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 949:175092. [PMID: 39079645 DOI: 10.1016/j.scitotenv.2024.175092] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2024] [Revised: 07/23/2024] [Accepted: 07/25/2024] [Indexed: 08/03/2024]
Abstract
Plant litter is an important source of soil organic carbon (SOC) in terrestrial ecosystems, and the pattern of litter inputs is also influenced by global change and human activities. However, the current understanding of the impact of changes in litter inputs on SOC dynamics remains contentious, and the mechanisms by which changes in litter inputs affect SOC have rarely been investigated from the perspective of microbial carbon use efficiency (CUE). We conducted a 1-year experiment with litter treatments (no aboveground litter (NL), natural aboveground litter (CK), and double aboveground litter (DL)) in Robinia pseudoacacia plantation forest on the Loess Plateau. The objective was to assess how changes in litter input affect SOC accumulation in forest soils from the perspective of microbial CUE. Results showed that NL increased soil microbial C limitation by 77.11 % (0-10 cm) compared to CK, while it had a negligible effect on nitrogen and phosphorus limitation. In contrast, DL had no significant effect on soil microbial nutrient limitation. Furthermore, NL was found to significantly increase microbial CUE and decrease microbial metabolic quotient (QCO2), while the opposite was observed with DL. It is noteworthy that NL significantly contributed to an increase in SOC of 30.72 %, while DL had no significant effect on SOC. Correlation analysis showed that CUE was directly proportional to SOC and inversely proportional to QCO2. The partial least squares pathway model indicated that NL indirectly regulated the accumulation of SOC, mainly through two pathways: promoting microbial CUE increase and reducing QCO2. Overall, this study elucidates the mechanism and novel insights regarding SOC accumulation under changes in litter input from the perspective of microbial CUE. These findings are critical for further comprehension of soil carbon dynamics and the terrestrial C-cycle.
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Affiliation(s)
- Jia Zeng
- College of Agronomy, Northwest Agriculture & Forestry University, Yangling 712100, Shaanxi, PR China; Shaanxi Engineering Research Center of Circular Agriculture, Yangling 712100, Shaanxi, PR China
| | - Xiangyang Li
- College of Agronomy, Northwest Agriculture & Forestry University, Yangling 712100, Shaanxi, PR China; Shaanxi Engineering Research Center of Circular Agriculture, Yangling 712100, Shaanxi, PR China
| | - Rui Song
- College of Agronomy, Northwest Agriculture & Forestry University, Yangling 712100, Shaanxi, PR China
| | - Haoxuan Xie
- College of Agronomy, Northwest Agriculture & Forestry University, Yangling 712100, Shaanxi, PR China
| | - Xiangnan Li
- College of Agronomy, Northwest Agriculture & Forestry University, Yangling 712100, Shaanxi, PR China
| | - Weichao Liu
- College of Agronomy, Northwest Agriculture & Forestry University, Yangling 712100, Shaanxi, PR China; Shaanxi Engineering Research Center of Circular Agriculture, Yangling 712100, Shaanxi, PR China
| | - Hanyu Liu
- College of Agronomy, Northwest Agriculture & Forestry University, Yangling 712100, Shaanxi, PR China; Shaanxi Engineering Research Center of Circular Agriculture, Yangling 712100, Shaanxi, PR China
| | - Yaoyao Du
- College of Agronomy, Northwest Agriculture & Forestry University, Yangling 712100, Shaanxi, PR China
| | - Miaoping Xu
- Institute of Soil and Water Conservation, Northwest A&F University, Yangling 712100, Shaanxi, PR China
| | - Chengjie Ren
- College of Agronomy, Northwest Agriculture & Forestry University, Yangling 712100, Shaanxi, PR China; Shaanxi Engineering Research Center of Circular Agriculture, Yangling 712100, Shaanxi, PR China
| | - Gaihe Yang
- College of Agronomy, Northwest Agriculture & Forestry University, Yangling 712100, Shaanxi, PR China; Shaanxi Engineering Research Center of Circular Agriculture, Yangling 712100, Shaanxi, PR China
| | - Xinhui Han
- College of Agronomy, Northwest Agriculture & Forestry University, Yangling 712100, Shaanxi, PR China.
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Li G, Ma Z, Wei L, Wu C, Chen H, Guo B, Ge T, Wang J, Li J. Long-term agricultural cultivation decreases microbial nutrient limitation in coastal saline soils. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 949:175005. [PMID: 39053542 DOI: 10.1016/j.scitotenv.2024.175005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/25/2024] [Revised: 07/12/2024] [Accepted: 07/22/2024] [Indexed: 07/27/2024]
Abstract
Soil enzyme activities are pivotal for diverse biochemical processes and are sensitive to land use changes. They can indicate soil microbial nutrient limitations. Nonetheless, the mechanism governing the response of soil microbial nutrient limitation to land use alterations in coastal regions remains elusive. We assessed soil nutrients, microbial biomass, and extracellular enzyme activities across various land use types-natural (wasteland and woodland) and agricultural (farmland and orchard)-in the Hangzhou Bay area, China. All four land use types experience co-limitation by carbon (C) and phosphorus (P). However, the extent of microbial resource limitations varies among them. Long-term agricultural practices diminish microbial C and P limitations in farmland and orchard soils compared to natural soils, as evidenced by lower ecoenzymatic C:N ratios and vector lengths, alongside higher microbial carbon use efficiency (CUE). Soil nutrient stoichiometric ratios and CUE are primary factors influencing microbial C and P limitations. Thus, fostering appropriate land use and management practices proves imperative to regulate soil nutrient cycles and foster the sustainable management of coastal areas.
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Affiliation(s)
- Guanjun Li
- School of Ecology and Nature Conservation, Beijing Forestry University, Beijing 100083, China; State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Key Laboratory of Biotechnology in Plant Protection of Ministry of Agriculture and Zhejiang Province, Institute of Plant Virology, Ningbo University, Ningbo 315211, China
| | - Zhi Ma
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Key Laboratory of Biotechnology in Plant Protection of Ministry of Agriculture and Zhejiang Province, Institute of Plant Virology, Ningbo University, Ningbo 315211, China
| | - Liang Wei
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Key Laboratory of Biotechnology in Plant Protection of Ministry of Agriculture and Zhejiang Province, Institute of Plant Virology, Ningbo University, Ningbo 315211, China
| | - Cuiyan Wu
- School of Materials and Chemical Engineering, Ningbo University of Technology, Ningbo 315211, China.
| | - Hao Chen
- State Key Laboratory of Biocontrol, School of Ecology, Shenzhen Campus of Sun Yat-sen University, Shenzhen 518107, China
| | - Bin Guo
- Institute of Environment, Resource, Soil and Fertilizer, Zhejiang Academy of Agricultural Sciences, Hangzhou 311300, China
| | - Tida Ge
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Key Laboratory of Biotechnology in Plant Protection of Ministry of Agriculture and Zhejiang Province, Institute of Plant Virology, Ningbo University, Ningbo 315211, China
| | - Jianming Wang
- School of Ecology and Nature Conservation, Beijing Forestry University, Beijing 100083, China
| | - Jingwen Li
- School of Ecology and Nature Conservation, Beijing Forestry University, Beijing 100083, China.
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Lu Q, An Z, Zhang B, Lu X, Mao X, Li J, Chang SX, Liu Y, Fu X. Optimizing tradeoff strategies of soil microbial community between metabolic efficiency and resource acquisition along a natural regeneration chronosequence. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 946:174337. [PMID: 38964388 DOI: 10.1016/j.scitotenv.2024.174337] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/02/2024] [Revised: 05/09/2024] [Accepted: 06/26/2024] [Indexed: 07/06/2024]
Abstract
The tradeoff between community-level soil microbial metabolic efficiency and resource acquisition strategies during natural regeneration remains unclear. Herein, we examined variations in soil extracellular enzyme activity, microbial metabolic quotient (qCO2), and microbial carbon use efficiency (CUE) along a chronosequence of natural regeneration by sampling secondary forests at 1, 10, 20, 30, 40, and 100 years after rubber plantation (RP) clearance. The results showed that the natural logarithms of carbon (C)-, nitrogen (N)-, and phosphorus (P)-acquiring enzyme activities were 1:1.68:1.37 and 1:1.54:1.38 in the RP and secondary forests, respectively, thus demonstrating that microbial metabolism was co-limited by N and P. Moreover, the soil microbial C limitation initially increased (1-40 years) and later decreased (100 years). Overall, the qCO2 increased, decreased, and then increased again in the initial (< 10 years), middle (10-40 years), and late (100 years) successional stages, respectively. Except for specific P-acquiring enzyme activities, the changes in other indicators with natural regeneration were consistent in the dry and wet seasons. Both qCO2 and CUE were mainly predicted by microbial community composition and physiological traits. These results indicate that soil microbial communities could employ tradeoff strategies between metabolic efficiency and resource acquisition to cope with variations in resources. Our findings provide new information on tradeoff strategies between metabolic efficiency and resource acquisition during natural regeneration.
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Affiliation(s)
- Qiang Lu
- State Environmental Protection Key Laboratory of Biodiversity and Biosafety, Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment, Nanjing 210042, China; Co-Innovation Center for Sustainable Forestry in Southern China, College of Forestry, Nanjing Forestry University, Nanjing 210037, China; Department of Renewable Resources, University of Alberta, Edmonton, AB T6G 2E3, Canada
| | - Zhengfeng An
- Department of Renewable Resources, University of Alberta, Edmonton, AB T6G 2E3, Canada
| | - Beibei Zhang
- Co-Innovation Center for Sustainable Forestry in Southern China, College of Forestry, Nanjing Forestry University, Nanjing 210037, China
| | - Xiaoqiang Lu
- State Environmental Protection Key Laboratory of Biodiversity and Biosafety, Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment, Nanjing 210042, China
| | - Xia Mao
- Jiangsu Vocational College of Agriculture and Forestry, Zhenjiang 212400, China
| | - Jiaqi Li
- State Environmental Protection Key Laboratory of Biodiversity and Biosafety, Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment, Nanjing 210042, China
| | - Scott X Chang
- Department of Renewable Resources, University of Alberta, Edmonton, AB T6G 2E3, Canada
| | - Yan Liu
- State Environmental Protection Key Laboratory of Biodiversity and Biosafety, Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment, Nanjing 210042, China.
| | - Xiangxiang Fu
- Co-Innovation Center for Sustainable Forestry in Southern China, College of Forestry, Nanjing Forestry University, Nanjing 210037, China.
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Jin J, Zhao D, Wang J, Wang Y, Zhu H, Wu Y, Fang L, Bing H. Fungal community determines soil multifunctionality during vegetation restoration in metallic tailing reservoir. JOURNAL OF HAZARDOUS MATERIALS 2024; 478:135438. [PMID: 39116750 DOI: 10.1016/j.jhazmat.2024.135438] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/28/2024] [Revised: 07/15/2024] [Accepted: 08/05/2024] [Indexed: 08/10/2024]
Abstract
Microorganisms are pivotal in sustaining soil functions, yet the specific contributions of bacterial and fungal succession on the functions during vegetation restoration in metallic tailing reservoirs remains elusive. Here, we explored bacterial and fungal succession and their impacts on soil multifunctionality along a ∼50-year vegetation restoration chronosequence in China's largest vanadium titano-magnetite tailing reservoir. We found a significant increase in soil multifunctionality, an index comprising factors pertinent to soil fertility and microbially mediated nutrient cycling, along the chronosequence. Despite increasing heavy metal levels, both bacterial and fungal communities exhibited significant increase in richness and network complexity over time. However, fungi demonstrated a slower succession rate and more consistent composition than bacteria, indicating their relatively higher resilience to environmental changes. Soil multifunctionality was intimately linked to bacterial and fungal richness or complexity. Nevertheless, when scrutinizing both richness and complexity concurrently, the correlations disappeared for bacteria but remained robust for fungi. This persistence reveals the critical role of the fungal community resilience in sustaining soil multifunctionality, particularly through their stable interactions with powerful core taxa. Our findings highlight the importance of fungal succession in enhancing soil multifunctionality during vegetation restoration in metallic tailing reservoirs, and manipulating fungal community may expedite ecological recovery of areas polluted with heavy metals.
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Affiliation(s)
- Jiyuan Jin
- Institute of Mountain Hazards and Environment, Chinese Academy of Sciences, Chengdu 610299, China; School of Geographic and Oceanographic Sciences, Nanjing University, Nanjing 210093, China
| | - Dongyan Zhao
- Institute of Mountain Hazards and Environment, Chinese Academy of Sciences, Chengdu 610299, China; College of Ecology and Environment, Chengdu University of Technology, Chengdu 610059, China
| | - Jipeng Wang
- CAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China
| | - Yuhan Wang
- Institute of Mountain Hazards and Environment, Chinese Academy of Sciences, Chengdu 610299, China; Hubei Key Laboratory of Mineral Resources Processing and Environment, Wuhan University of Technology, Wuhan 430070, China
| | - He Zhu
- Institute of Mountain Hazards and Environment, Chinese Academy of Sciences, Chengdu 610299, China
| | - Yanhong Wu
- Institute of Mountain Hazards and Environment, Chinese Academy of Sciences, Chengdu 610299, China
| | - Linchuan Fang
- Hubei Key Laboratory of Mineral Resources Processing and Environment, Wuhan University of Technology, Wuhan 430070, China
| | - Haijian Bing
- Institute of Mountain Hazards and Environment, Chinese Academy of Sciences, Chengdu 610299, China.
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Cummins CS, Rosemond AD, Tomczyk NJ, Wenger SJ, Bumpers PM, Gulis V, Helton AM, Benstead JP. Temperature dependence of leaf breakdown in streams differs between organismal groups and leaf species. Ecology 2024; 105:e4405. [PMID: 39245911 DOI: 10.1002/ecy.4405] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/08/2023] [Revised: 05/16/2024] [Accepted: 06/27/2024] [Indexed: 09/10/2024]
Abstract
Increased temperatures are altering rates of organic matter (OM) breakdown in stream ecosystems with implications for carbon (C) cycling in the face of global change. The metabolic theory of ecology (MTE) provides a framework for predicting temperature effects on OM breakdown, but differences in the temperature dependence of breakdown driven by different organismal groups (i.e., microorganisms vs. invertebrate detritivores) and litter species remain unresolved. Over two years, we conducted 12 60-day leaf litterbag incubations in 20 headwater streams in the southern Appalachian Mountains (USA). We compared temperature dependence (as activation energy, Ea) between microbial and detritivore-mediated breakdown, and between a highly recalcitrant (Rhododendron maximum) and a relatively labile (Acer rubrum) leaf species. Detritivore-mediated breakdown had a higher Ea than microbial breakdown for both leaf species (Rhododendron: 1.48 > 0.56 eV; Acer: 0.97 > 0.29 eV), and Rhododendron breakdown had a higher Ea than Acer breakdown for both organismal groups. Similarly, the Ea of total (coarse-mesh) Rhododendron breakdown was higher than the Ea of total Acer breakdown (0.89 > 0.52 eV). These effects for total breakdown were large, implying that the number of days to 95% mass loss would decline by 40% for Rhododendron and 26% for Acer between 12°C (our mean temperature value) and 16°C (+4°C, reflecting projected increases in global surface temperature due to climate change). Despite patterns in Ea, overall breakdown rates were higher for microbes than detritivores, and for Acer than Rhododendron over most of our temperature gradient. Additionally, the Ea for a subset of the microbial breakdown data declined from 0.40 to 0.22 eV when fungal biomass was included as a model predictor, highlighting the key role of fungi in determining the temperature dependence of litter breakdown. Our results imply that, as streams warm, routing of leaf litter C to detritivore-mediated fates will increase faster than predicted by previous studies and MTE, especially for labile litter. As temperatures rise, earlier depletion of autumn-shed, labile leaf litter combined with rapid breakdown rates of recalcitrant litter could exacerbate seasonal resource limitation and alter carbon storage and transport dynamics in temperate headwater stream networks.
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Affiliation(s)
| | - Amy D Rosemond
- Odum School of Ecology, University of Georgia, Athens, Georgia, USA
| | - Nathan J Tomczyk
- Odum School of Ecology, University of Georgia, Athens, Georgia, USA
| | - Seth J Wenger
- Odum School of Ecology, University of Georgia, Athens, Georgia, USA
| | | | - Vladislav Gulis
- Department of Biology, Coastal Carolina University, Conway, South Carolina, USA
| | - Ashley M Helton
- Department of Natural Resources and the Environment and the Center for Environmental Sciences and Engineering, University of Connecticut, Storrs, Connecticut, USA
| | - Jonathan P Benstead
- Department of Biological Sciences, University of Alabama, Tuscaloosa, Alabama, USA
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10
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He P, Ye Q, Yu K, Wang H, Xu H, Yin Q, Yue M, Liang X, Wang W, You Z, Zhong Y, Liu H. Growing-Season Precipitation Is a Key Driver of Plant Leaf Area to Sapwood Area Ratio at the Global Scale. PLANT, CELL & ENVIRONMENT 2024. [PMID: 39327871 DOI: 10.1111/pce.15169] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/28/2024] [Revised: 09/05/2024] [Accepted: 09/09/2024] [Indexed: 09/28/2024]
Abstract
Leaf area to sapwood area ratio (AL/AS) influences carbon sequestration, community composition, and ecosystem functioning in terrestrial vegetation and is closely related to leaf economics and hydraulics. However, critical predictors of AL/AS are not well understood. We compiled an AL/AS data set with 1612 species-site combinations (1137 species from 285 sites worldwide) from our field experiments and published literature. We found the global mean AL/AS to be 0.63 m2 cm-2, with its variation largely driven by growing-season precipitation (Pgs), which accounted for 18% of the variation in AL/AS. Species in tropical rainforests exhibited the highest AL/AS (0.82 m2 cm-2), whereas desert species showed the lowest AL/AS (0.16 m2 cm-2). Soil factors such as soil nitrogen and soil organic carbon exhibited positive effects on AL/AS, whereas soil pH was negatively correlated with AL/AS. Tree density accounted for 7% of the variation in AL/AS. All biotic and abiotic predictors collectively explained up to 45% of the variation in AL/AS. Additionally, AL/AS was positively correlated to the net primary productivity (NPP) of the ecosystem. Our study provides insights into the driving factors of AL/AS at the global scale and highlights the importance of AL/AS in ecosystem productivity. Given that Pgs is the most critical driver of AL/AS, alterations in global precipitation belts, particularly seasonal precipitation, may induce changes in plant leaf area on the branches.
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Affiliation(s)
- Pengcheng He
- Guangdong Provincial Key Laboratory of Applied Botany, Key Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
| | - Qing Ye
- Guangdong Provincial Key Laboratory of Applied Botany, Key Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
- College of Life Sciences, Gannan Normal University, Ganzhou, China
| | - Kailiang Yu
- Princeton Environmental Institute, Princeton University, Princeton, New Jersey, USA
| | - Han Wang
- Ministry of Education Key Laboratory for Earth System Modeling, Department of Earth System Science, Tsinghua University, Beijing, China
| | - Huiying Xu
- Ministry of Education Key Laboratory for Earth System Modeling, Department of Earth System Science, Tsinghua University, Beijing, China
- Department of Geography, University of Exeter, Exeter, UK
| | - Qiulong Yin
- Shaanxi Key Laboratory of Qinling Ecological Intelligent Monitoring and Protection, School of Ecology and Environment, Northwestern Polytechnical University, Xi'an, China
| | - Ming Yue
- Key Laboratory of Resource Biology and Biotechnology in Western China, Northwest University, Xi'an, China
| | - Xingyun Liang
- Guangdong Provincial Key Laboratory of Applied Botany, Key Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
| | - Weiren Wang
- Guangdong Provincial Key Laboratory of Applied Botany, Key Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
| | - Zhangtian You
- Guangdong Provincial Key Laboratory of Applied Botany, Key Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
| | - Yi Zhong
- College of Life and Environmental Sciences, Minzu University of China, Beijing, China
| | - Hui Liu
- Guangdong Provincial Key Laboratory of Applied Botany, Key Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
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11
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Chavez-Ortiz P, Larsen J, Olmedo-Alvarez G, García-Oliva F. Control of inorganic and organic phosphorus molecules on microbial activity, and the stoichiometry of nutrient cycling in soils in an arid, agricultural ecosystem. PeerJ 2024; 12:e18140. [PMID: 39329143 PMCID: PMC11426319 DOI: 10.7717/peerj.18140] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2024] [Accepted: 08/30/2024] [Indexed: 09/28/2024] Open
Abstract
Background The dynamics of carbon (C), nitrogen (N), and phosphorus (P) in soils determine their fertility and crop growth in agroecosystems. These dynamics depend on microbial metabolism, which in turn depends on nutrient availability. Farmers typically apply either mineral or organic fertilizers to increase the availability of nutrients in soils. Phosphorus, which usually limits plant growth, is one of the most applied nutrients. Our knowledge is limited regarding how different forms of P impact the ability of microbes in soils to produce the enzymes required to release nutrients, such as C, N and P from different substrates. Methods In this study, we used the arable layer of a calcareous soil obtained from an alfalfa cropland in Cuatro Cienegas, México, to perform an incubation experiment, where five different phosphate molecules were added as treatments substrates: three organic molecules (RNA, adenine monophosphate (AMP) and phytate) and two inorganic molecules (calcium phosphate and ammonium phosphate). Controls did not receive added phosphorus. We measured nutrient dynamics and soil microbial activity after 19 days of incubation. Results Different P molecules affected potential microbial C mineralization (CO2-C) and enzyme activities, specifically in the organic treatments. P remained immobilized in the microbial biomass (Pmic) regardless of the source of P, suggesting that soil microorganisms were limited by phosphorus. Higher mineralization rates in soil amended with organic P compounds depleted dissolved organic carbon and increased nitrification. The C:N:P stoichiometry of the microbial biomass implied a change in the microbial community which affected the carbon use efficiency (CUE), threshold elemental ratio (TER), and homeostasis. Conclusion Different organic and inorganic sources of P affect soil microbial community structure and metabolism. This modifies the dynamics of soil C, N and P. These results highlight the importance of considering the composition of organic matter and phosphate compounds used in agriculture since their impact on the microbial activity of the soil can also affect plant productivity.
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Affiliation(s)
- Pamela Chavez-Ortiz
- Instituto de Investigaciones en Ecosistemas y Sustentabilidad, Universidad Nacional Autónoma de México, Morelia, Michoacán, Mexico
- Posgrado en Ciencias Biológicas, Universidad Nacional Autónoma de México, Mexico, Ciudad de México, Mexico
| | - John Larsen
- Instituto de Investigaciones en Ecosistemas y Sustentabilidad, Universidad Nacional Autónoma de México, Morelia, Michoacán, Mexico
| | - Gabriela Olmedo-Alvarez
- Departamento de Ingeniería Genética, Centro de Investigación y de Estudios Avanzados del I.P.N., Irapuato, Guanajuato, Mexico
| | - Felipe García-Oliva
- Instituto de Investigaciones en Ecosistemas y Sustentabilidad, Universidad Nacional Autónoma de México, Morelia, Michoacán, Mexico
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12
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Anwar F, Sanaullah M, Ali HM, Hussain S, Mahmood F, Zahid Z, Shahzad T. Effect of combined application of inorganic nitrogen and phosphorus to an organic-matter poor soil on soil organic matter cycling. PeerJ 2024; 12:e17984. [PMID: 39247545 PMCID: PMC11380837 DOI: 10.7717/peerj.17984] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2024] [Accepted: 08/06/2024] [Indexed: 09/10/2024] Open
Abstract
Background Sequestering carbon dioxide (CO2) in agricultural soils promises climate change mitigation as well as sustainable ecosystem services. In order to stabilize crop residues as soil carbon (C), addition of mineral nutrients in excess to crop needs is suggested as an inevitable practice. However, the effect of two macronutrients i.e., nitrogen (N) & phosphorus (P), on C cycling has been found contradictory. Mineral N usually decreases whereas mineral P increases the soil organic C (SOC) mineralization and microbial biomass. How the addition of these macronutrients in inorganic form to an organic-matter poor soil affect C cycling remains to be investigated. Methods To reconcile this contradiction, we tested the effect of mineral N (120 kg N ha-1) and/or P (60 kg N ha-1) in presence or absence of maize litter (1 g C kg-1 soil) on C cycling in an organic-matter poor soil (0.87% SOC) in a laboratory incubation. Soil respiration was measured periodically during the incubation whereas various soil variables were measured at the end of the incubation. Results Contrary to literature, P addition stimulated soil C mineralization very briefly at start of incubation period and released similar total cumulative CO2-C as in control soil. We attributed this to low organic C content of the soil as P addition could desorb very low amounts of labile C for microbial use. Adding N with litter built up the largest microbial biomass (144% higher) without inducing any further increase in CO2-C release compared to litter only addition. However, adding P with litter did not induce any increase in microbial biomass. Co-application of inorganic N and P significantly increased C mineralization in presence (19% with respect to only litter amended) as well as absence (41% with respect to control soil) of litter. Overall, our study indicates that the combined application of inorganic N and P stabilizes added organic matter while depletes the already unamended soil.
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Affiliation(s)
- Faiza Anwar
- Department of Environmental Sciences, Government College University, Faisalabad, Faisalabad, Punjab, Pakistan
| | - Muhammad Sanaullah
- Institute of Soil and Environmental Sciences, University of Agriculture Faisalabad, Faisalabad, Punjab, Pakistan
| | - Hayssam M Ali
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Sabir Hussain
- Department of Environmental Sciences, Government College University, Faisalabad, Faisalabad, Punjab, Pakistan
| | - Faisal Mahmood
- Department of Environmental Sciences, Government College University, Faisalabad, Faisalabad, Punjab, Pakistan
| | - Zubda Zahid
- Department of Agroenvironmental Chemistry and Plant Nutrition, Faculty of Agrobiology, Food, and Natural Resources, Czech University of Life Sciences Prague, Prague, Czech Republic
| | - Tanvir Shahzad
- Department of Environmental Sciences, Government College University, Faisalabad, Faisalabad, Punjab, Pakistan
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13
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Cui Y, Hu J, Peng S, Delgado-Baquerizo M, Moorhead DL, Sinsabaugh RL, Xu X, Geyer KM, Fang L, Smith P, Peñuelas J, Kuzyakov Y, Chen J. Limiting Resources Define the Global Pattern of Soil Microbial Carbon Use Efficiency. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2024; 11:e2308176. [PMID: 39024521 PMCID: PMC11425281 DOI: 10.1002/advs.202308176] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/27/2023] [Revised: 06/30/2024] [Indexed: 07/20/2024]
Abstract
Microbial carbon (C) use efficiency (CUE) delineates the proportion of organic C used by microorganisms for anabolism and ultimately influences the amount of C sequestered in soils. However, the key factors controlling CUE remain enigmatic, leading to considerable uncertainty in understanding soil C retention and predicting its responses to global change factors. Here, we investigate the global patterns of CUE estimate by stoichiometric modeling in surface soils of natural ecosystems, and examine its associations with temperature, precipitation, plant-derived C and soil nutrient availability. We found that CUE is determined by the most limiting resource among these four basic environmental resources within specific climate zones (i.e., tropical, temperate, arid, and cold zones). Higher CUE is common in arid and cold zones and corresponds to limitations in temperature, water, and plant-derived C input, while lower CUE is observed in tropical and temperate zones with widespread limitation of nutrients (e.g., nitrogen or phosphorus) in soil. The contrasting resource limitations among climate zones led to an apparent increase in CUE with increasing latitude. The resource-specific dependence of CUE implies that soils in high latitudes with arid and cold environments may retain less organic C in the future, as warming and increased precipitation can reduce CUE. In contrast, oligotrophic soils in low latitudes may increase organic C retention, as CUE could be increased with concurrent anthropogenic nutrient inputs. The findings underscore the importance of resource limitations for CUE and suggest asymmetric responses of organic C retention in soils across latitudes to global change factors.
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Affiliation(s)
- Yongxing Cui
- Institute of Biology, Freie Universität Berlin, 14195, Berlin, Germany
- Department of Agroecology, Aarhus University, Tjele, 8830, Denmark
- Sino-French Institute for Earth System Science, College of Urban and Environmental Sciences, Peking University, Beijing, 100871, China
| | - Junxi Hu
- College of Forestry, Sichuan Agricultural University, Chengdu, 611130, China
| | - Shushi Peng
- Sino-French Institute for Earth System Science, College of Urban and Environmental Sciences, Peking University, Beijing, 100871, China
| | - Manuel Delgado-Baquerizo
- Laboratorio de Biodiversidad y Funcionamiento Ecosistémico. Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), CSIC, Av. Reina Mercedes 10, Sevilla, E-41012, Spain
| | - Daryl L Moorhead
- Department of Environmental Sciences, University of Toledo, Toledo, OH, 43606, USA
| | - Robert L Sinsabaugh
- Department of Biology, University of New Mexico, Albuquerque, NM, 87131, USA
| | - Xiaofeng Xu
- Biology Department, San Diego State University, San Diego, CA, 92182, USA
| | - Kevin M Geyer
- Department of Biology, Young Harris College, Young Harris, GA, 30582, USA
| | - Linchuan Fang
- School of Resource and Environmental Engineering, Wuhan University of Technology, Wuhan, 430070, China
| | - Pete Smith
- Institute of Biological and Environmental Sciences, University of Aberdeen, 23 St. Machar Drive, Aberdeen, AB24 3UU, UK
| | - Josep Peñuelas
- CSIC, Global Ecology Unit CREAF-CSIC-UAB, Bellaterra, Barcelona, Catalonia, 08913, Spain
- CREAF, 08913 Cerdanyola del Vallès, Barcelona, Catalonia, 08193, Spain
| | - Yakov Kuzyakov
- Department of Soil Science of Temperate Ecosystems, Department of Agricultural Soil Science, University of Goettingen, 37077, Göttingen, Germany
- Peoples Friendship University of Russia (RUDN University), Moscow, 117198, Russia
| | - Ji Chen
- Department of Agroecology, Aarhus University, Tjele, 8830, Denmark
- State Key Laboratory of Loess and Quaternary Geology, Institute of Earth Environment, Chinese Academy of Sciences, Xi'an, 710061, China
- Institute of Global Environmental Change, Department of Earth and Environmental Science, School of Human Settlements and Civil Engineering, Xi'an Jiaotong University, Xi'an, Shaanxi Province, 710049, China
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14
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Hu Z, Fernández-Martínez M, He Q, Xu Z, Jiang L, Zhou G, Chen J, Nie M, Yu Q, Feng H, Huang Z, Michaletz ST. Fungal composition associated with host tree identity mediates nutrient addition effects on wood microbial respiration. Ecology 2024; 105:e4375. [PMID: 38924062 DOI: 10.1002/ecy.4375] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/18/2023] [Revised: 03/03/2024] [Accepted: 05/17/2024] [Indexed: 06/28/2024]
Abstract
Fungi are key decomposers of deadwood, but the impact of anthropogenic changes in nutrients and temperature on fungal community and its consequences for wood microbial respiration are not well understood. Here, we examined how nitrogen and phosphorus additions (field experiment) and warming (laboratory experiment) together influence fungal composition and microbial respiration from decomposing wood of angiosperms and gymnosperms in a subtropical forest. Nutrient additions significantly increased wood microbial respiration via fungal composition, but effects varied with nutrient types and taxonomic groups. Specifically, phosphorus addition significantly increased wood microbial respiration (65%) through decreased acid phosphatase activity and increased abundance of fast-decaying fungi (e.g., white rot), while nitrogen addition marginally increased it (30%). Phosphorus addition caused a greater increase in microbial respiration in gymnosperms than in angiosperms (83.3% vs. 46.9%), which was associated with an increase in Basidiomycota:Ascomycota operational taxonomic unit abundance in gymnosperms but a decrease in angiosperms. The temperature dependencies of microbial respiration were remarkably constant across nutrient levels, consistent with metabolic scaling theory hypotheses. This is because there was no significant interaction between temperature and wood phosphorus availability or fungal composition, or the interaction among the three factors. Our results highlight the key role of tree identity in regulating nutrient response of wood microbial respiration through controlling fungal composition. Given that the range of angiosperm species may expand under climate warming and forest management, our data suggest that expansion will decrease nutrient effects on forest carbon cycling in forests previously dominated by gymnosperm species.
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Affiliation(s)
- Zhenhong Hu
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, College of Soil and Water Conservation Science and Engineering (Institute of Soil and Water Conservation), Northwest A&F University, Yangling, Shaanxi, China
- Northwest A&F University Shenzhen Research Institute, Shenzhen, Guangdong, China
- CREAF, Bellaterra (Cerdanyola del Vallès), Catalonia, Spain
| | - Marcos Fernández-Martínez
- CREAF, Bellaterra (Cerdanyola del Vallès), Catalonia, Spain
- BEECA-UB, Department of Evolutionary Biology, Ecology and Environmental Sciences, University of Barcelona, Barcelona, Catalonia, Spain
| | - Qinsi He
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, College of Soil and Water Conservation Science and Engineering (Institute of Soil and Water Conservation), Northwest A&F University, Yangling, Shaanxi, China
- School of Life Sciences, University of Technology Sydney, Sydney, New South Wales, Australia
| | - Zhiyuan Xu
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, College of Soil and Water Conservation Science and Engineering (Institute of Soil and Water Conservation), Northwest A&F University, Yangling, Shaanxi, China
- Key Laboratory of Low-carbon Green Agriculture in Northwestern China, Ministry of Agriculture and Rural Affairs of China, College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi, China
| | - Lin Jiang
- School of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia, USA
| | - Guiyao Zhou
- Laboratorio de Biodiversidad y Funcionamiento Ecosistémico, Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), CSIC, Sevilla, Spain
| | - Ji Chen
- State Key Laboratory of Loess and Quaternary Geology, Institute of Earth Environment, Chinese Academy of Sciences, Xi'an, China
- Guanzhong Plain Ecological Environment Change and Comprehensive Treatment National Observation and Research Station, Xi'an, China
| | - Ming Nie
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, Institute of Eco-Chongming, School of Life Sciences, Fudan University, Shanghai, China
| | - Qiang Yu
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, College of Soil and Water Conservation Science and Engineering (Institute of Soil and Water Conservation), Northwest A&F University, Yangling, Shaanxi, China
| | - Hao Feng
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, College of Soil and Water Conservation Science and Engineering (Institute of Soil and Water Conservation), Northwest A&F University, Yangling, Shaanxi, China
| | - Zhiqun Huang
- Key Laboratory of Humid Subtropical Eco-Geographical Process of Ministry of Education, Fuzhou, China
- School of Geographical Science, Fujian Normal University, Fuzhou, China
| | - Sean T Michaletz
- Department of Botany and Biodiversity Research Centre, University of British Columbia, Vancouver, British Columbia, Canada
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15
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Guseva K, Mohrlok M, Alteio L, Schmidt H, Pollak S, Kaiser C. Bacteria face trade-offs in the decomposition of complex biopolymers. PLoS Comput Biol 2024; 20:e1012320. [PMID: 39116194 PMCID: PMC11364420 DOI: 10.1371/journal.pcbi.1012320] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2023] [Revised: 08/30/2024] [Accepted: 07/12/2024] [Indexed: 08/10/2024] Open
Abstract
Although depolymerization of complex carbohydrates is a growth-limiting bottleneck for microbial decomposers, we still lack understanding about how the production of different types of extracellular enzymes affect individual microbes and in turn the performance of whole decomposer communities. In this work we use a theoretical model to evaluate the potential trade-offs faced by microorganisms in biopolymer decomposition which arise due to the varied biochemistry of different depolymerizing enzyme classes. We specifically consider two broad classes of depolymerizing extracellular enzymes, which are widespread across microbial taxa: exo-enzymes that cleave small units from the ends of polymer chains and endo-enzymes that act at random positions generating degradation products of varied sizes. Our results demonstrate a fundamental trade-off in the production of these enzymes, which is independent of system's complexity and which appears solely from the intrinsically different temporal depolymerization dynamics. As a consequence, specialists that produce either exo- or only endo-enzymes limit their growth to high or low substrate conditions, respectively. Conversely, generalists that produce both enzymes in an optimal ratio expand their niche and benefit from the synergy between the two enzymes. Finally, our results show that, in spatially-explicit environments, consortia composed of endo- and exo-specialists can only exist under oligotrophic conditions. In summary, our analysis demonstrates that the (evolutionary or ecological) selection of a depolymerization pathway will affect microbial fitness under low or high substrate conditions, with impacts on the ecological dynamics of microbial communities. It provides a possible explanation why many polysaccharide degraders in nature show the genetic potential to produce both of these enzyme classes.
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Affiliation(s)
- Ksenia Guseva
- Centre for Microbiology and Ecosystem Science, University of Vienna, Vienna, Austria
| | - Moritz Mohrlok
- Centre for Microbiology and Ecosystem Science, University of Vienna, Vienna, Austria
| | - Lauren Alteio
- Centre for Microbiology and Ecosystem Science, University of Vienna, Vienna, Austria
- FFoQSI GmbH - Austrian Competence Centre for Feed and Food Quality, Safety and innovation, Tulln, Austria
| | - Hannes Schmidt
- Centre for Microbiology and Ecosystem Science, University of Vienna, Vienna, Austria
| | - Shaul Pollak
- Centre for Microbiology and Ecosystem Science, University of Vienna, Vienna, Austria
| | - Christina Kaiser
- Centre for Microbiology and Ecosystem Science, University of Vienna, Vienna, Austria
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16
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Duan S, Guo J, Zhang Y, Liu L, Wang R, Zheng R. Rhizosphere effects and microbial N limitations drive the root N limitations in the rhizosphere during secondary succession in a Pinus tabuliformis forest in North China. FRONTIERS IN PLANT SCIENCE 2024; 15:1392934. [PMID: 39139727 PMCID: PMC11319129 DOI: 10.3389/fpls.2024.1392934] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/28/2024] [Accepted: 06/27/2024] [Indexed: 08/15/2024]
Abstract
Introduction Rhizosphere effects (REs) have recently been identified as important regulators of root and microbial nutrient acquisition and are positively involved in nutrient cycling of belowground carbon (C), nitrogen (N), and phosphorus (P). Nutrient conditions of the fine roots and soil N are likely to influence REs. Still, it is unclear how REs of soil nutrients themselves variably impact the supply of nutrients to plants in terms of the responses to soil N due to succession. Methods In this study, we applied both fine roots and extracellular enzymes for vector analysis and stoichiometry of N:P to explore the metabolic limitations of roots and rhizospheric soil microbes and their relationships with REs across five levels of soil N (0, 5, 10, 15, and 20 kg N m-2 year-1) along successional age classes of 42, 55, and 65 years in a Pinus tabuliformis forest. Results Overall, the metabolism of root and rhizospheric soil microbes was mediated by soil N. N limitation of roots initially decreased before increasing, whereas that of microbes demonstrated opposite trends to the N levels owing to competition for inorganic N between them by REs of NO3 --N. However, N limitations of both roots and microbes were alleviated in young stands and increased with succession after the application of N. In addition, root N limitations were manipulated by REs of three different soil N-related indicators, i.e., total N, NH4 +-N, and NO3 --N. Rhizospheric soil microbial N limitation was almost unaffected by REs due to their strong homeostasis but was an important driver in the regulation of root N limitation. Discussion Our results indicated that successional age was the most critical driver that directly and indirectly affected root N metabolism. However, the level of N application had a slight effect on root N limitation. Microbial N limitation and variations in the REs of N indicators regulated root N limitation in the rhizosphere. As a result, roots utilized REs to sequester N to alleviate N limitations. These findings contribute to novel mechanistic perspectives on the sustainability of N nutrition by regulating N cycling in a system of plant-soil-microbes in the rhizosphere to adapt to global N deposition or the heterogeneous distribution of bioavailable soil N with succession.
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Affiliation(s)
| | - Jinping Guo
- College of Forestry, Shanxi Agricultural University, Jinzhong, China
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17
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Zhao D, Bol R, Wang J, Jin J, Wang Y, Wang T, Zhu H, Wu Y, Fang L, Bing H. Soil heavy metal pollution promotes extracellular enzyme production by mediating microbial community structure during vegetation restoration of metallic tailing reservoir. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 948:174783. [PMID: 39009168 DOI: 10.1016/j.scitotenv.2024.174783] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2024] [Revised: 06/25/2024] [Accepted: 07/12/2024] [Indexed: 07/17/2024]
Abstract
Vegetation restoration in metallic tailing reservoirs is imperative to restore the post-mining degraded ecosystems. Extracellular enzymes determine microbial resource acquisition in soils, yet the mechanisms controlling the enzyme activity and stoichiometry during vegetation restoration in metallic tailing reservoirs remain elusive. Here, we investigated the variations and drivers of C-, N- and P-acquiring enzymes together with microbial community along a 50-year vegetation restoration chronosequence in the China's largest vanadium titano-magnetite tailing reservoir. We found a parabolic pattern in the enzyme activity and efficiency along the chronosequence, peaking at the middle restoration stage (∼30 years) with approximately six-fold increase relative to the initial 1-year site. The enzyme ratios of C:P and N:P decreased by 33 % and 68 % along the chronosequence, respectively, indicating a higher microbial demand of C and N at the early stage and a higher demand of P at the later stage. Soil nutrients directly determined the enzyme activities and stoichiometry, whereas microbial biomass and community structure regulated the temporal pattern of the enzyme efficiency. Surprisingly, increased heavy metal pollution imposed a positive effect on the enzyme efficiency indirectly by altering microbial community structure. This was evidenced by the increased microbial diversity and the conversion of copiotrophic to oligotrophic and stress-tolerant taxa along the chronosequence. Our findings provide new insights into microbial functioning in soil nutrient dynamics during vegetation restoration under increasing heavy metal pollution.
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Affiliation(s)
- Dongyan Zhao
- Institute of Mountain Hazards and Environment, Chinese Academy of Sciences, 610299 Chengdu, China; College of Ecology and Environment, Chengdu University of Technology, 610059 Chengdu, China
| | - Roland Bol
- Institute of Bio- and Geosciences, Agrosphere (IBG-3), Forschungszentrum Jülich GmbH, Wilhelm-Johnen-Straße, 52428 Jülich, Germany
| | - Jipeng Wang
- College of Ecology and Environment, Chengdu University of Technology, 610059 Chengdu, China; Chengdu Institute of Biology, Chinese Academy of Sciences, 610041 Chengdu, China
| | - Jiyuan Jin
- Institute of Mountain Hazards and Environment, Chinese Academy of Sciences, 610299 Chengdu, China
| | - Yuhan Wang
- Institute of Mountain Hazards and Environment, Chinese Academy of Sciences, 610299 Chengdu, China; Hubei Key Laboratory of Mineral Resources Processing and Environment, Wuhan University of Technology, 430070 Wuhan, China
| | - Tianxin Wang
- Institute of Mountain Hazards and Environment, Chinese Academy of Sciences, 610299 Chengdu, China
| | - He Zhu
- Institute of Mountain Hazards and Environment, Chinese Academy of Sciences, 610299 Chengdu, China
| | - Yanhong Wu
- Institute of Mountain Hazards and Environment, Chinese Academy of Sciences, 610299 Chengdu, China
| | - Linchuan Fang
- Hubei Key Laboratory of Mineral Resources Processing and Environment, Wuhan University of Technology, 430070 Wuhan, China
| | - Haijian Bing
- Institute of Mountain Hazards and Environment, Chinese Academy of Sciences, 610299 Chengdu, China.
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18
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Gao B, Gao F, Zhang X, Li Y, Yao H. Effects of different sizes of microplastic particles on soil respiration, enzyme activities, microbial communities, and seed germination. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 933:173100. [PMID: 38735330 DOI: 10.1016/j.scitotenv.2024.173100] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2024] [Revised: 04/17/2024] [Accepted: 05/07/2024] [Indexed: 05/14/2024]
Abstract
Microplastics (MPs) are emerging pollutants of terrestrial ecosystems. The impacts of MP particle size on terrestrial systems remain unclear. The current study aimed to investigate the effects of six particle sizes (i.e., 4500, 1500, 500, 50, 5, and 0.5 μm) of polyethylene (PE) and polyvinyl chloride (PVC) on soil respiration, enzyme activity, bacteria, fungi, protists, and seed germination. MPs significantly promoted soil respiration, and the stimulating effects of PE were the strongest for medium and small-sized (0.5-1500 μm) particles, while those of PVC were the strongest for small particle sizes (0.5-50 μm). Large-sized (4500 μm) PE and all sizes of PVC significantly improved soil urease activity, while medium-sized (1500 μm) PVC significantly improved soil invertase activity. MPs altered the soil microbial community diversity, and the effects were especially pronounced for medium and small-sized (0.5-1500 μm) particles of PE and PVC on bacteria and fungi and small-sized (0.5 μm) particles of PE on protists. The impacts of MPs on bacteria and fungi were greater than on protists. The seed germination rate of Brassica chinensis decreased gradually with the decrease in PE MPs particle size. Therefore, to reduce the impact of MPs on soil ecosystems, effective measures should be taken to avoid the transformation of MPs into smaller particles in soil environmental management.
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Affiliation(s)
- Bo Gao
- Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, People's Republic of China; College of Tourism & Landscape Architecture, Guilin University of Technology, Guilin 541004, People's Republic of China; University of Chinese Academy of Sciences, Beijing 100049, People's Republic of China; Zhejiang Key Laboratory of Urban Environmental Processes and Pollution Control, CAS Haixi Industrial Technology Innovation Center in Beilun, Ningbo 315830, People's Republic of China
| | - Fuyun Gao
- Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, People's Republic of China; University of Chinese Academy of Sciences, Beijing 100049, People's Republic of China; Zhejiang Key Laboratory of Urban Environmental Processes and Pollution Control, CAS Haixi Industrial Technology Innovation Center in Beilun, Ningbo 315830, People's Republic of China
| | - Xingfeng Zhang
- College of Tourism & Landscape Architecture, Guilin University of Technology, Guilin 541004, People's Republic of China
| | - Yaying Li
- Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, People's Republic of China; Zhejiang Key Laboratory of Urban Environmental Processes and Pollution Control, CAS Haixi Industrial Technology Innovation Center in Beilun, Ningbo 315830, People's Republic of China
| | - Huaiying Yao
- Research Center for Environmental Ecology and Engineering, School of Environmental Ecology and Biological Engineering, Wuhan Institute of Technology, 206 Guanggu 1st road, Wuhan 430205, People's Republic of China.
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19
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Yuan X, Ma S, Geng H, Cao M, Chen H, Zhou B, Yuan R, Luo S, Sun K, Wang F. Joint effect of black carbon deriving from wheat straw burning and plastic mulch film debris on the soil biochemical properties, bacterial and fungal communities. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 947:174522. [PMID: 38981545 DOI: 10.1016/j.scitotenv.2024.174522] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2024] [Revised: 07/02/2024] [Accepted: 07/03/2024] [Indexed: 07/11/2024]
Abstract
Black carbon (BC) formed after straw burning remains in farmland soil and coexists with plastic mulch film (PMF) debris. It is unclear how BC influences soil multifunctionality in the presence of PMF debris. In this study, we determined the joint effects of BC and PMF debris on soil biochemical properties and microbial communities. We conducted a soil microcosm experiment by adding BC formed by direct burning of wheat straw and PMF debris (polyethylene (PE) and biodegradable PMF (BP)) into soil at the dosages of 1 %, and soils were sampled on the 15th, 30th, and 100th day of soil incubation for high-throughput sequencing. The results showed that the degradation of PMF debris was accompanied by the release of microplastics (MPs). BC decreased NH4+-N (PE: 68.63 %; BP: 58.97 %) and NO3--N (PE: 12.83 %; BP: 51.37 %) and increased available phosphorus (AP) (PE: 79.12 %; BP: 26.09 %) in soil containing PMF debris. There were significant differences in enzyme activity among all the treatments. High-throughput sequencing indicated that BC reduced bacterial and fungal richness and fungal diversity in PMF debris-exposed soil, whereas PMF debris and BC resulted in significant changes in the proportion of dominant phyla and genera of bacteria and fungi, which were affected by incubation time. Furthermore, BC affected microorganisms by influencing soil properties, and pH and N content were the main influencing factors. In addition, FAPRPTAX analysis indicated that BC and PMF debris affected soil C and N cycling. These findings provide new insights into the response of soil multifunctionality to BC and PMF debris.
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Affiliation(s)
- Xiaoyan Yuan
- School of Energy & Environmental Engineering, University of Science and Technology Beijing, 30 Xueyuan Road, Haidian District, Beijing, 100083, China; School of Environment, Beijing Normal University, No.19, Xinjiekouwai St, Haidian District, Beijing, 100875, PR China
| | - Shuai Ma
- School of Environment, Beijing Normal University, No.19, Xinjiekouwai St, Haidian District, Beijing, 100875, PR China.
| | - Huanhuan Geng
- School of Energy & Environmental Engineering, University of Science and Technology Beijing, 30 Xueyuan Road, Haidian District, Beijing, 100083, China
| | - Manman Cao
- School of Environment, Beijing Normal University, No.19, Xinjiekouwai St, Haidian District, Beijing, 100875, PR China
| | - Huilun Chen
- School of Energy & Environmental Engineering, University of Science and Technology Beijing, 30 Xueyuan Road, Haidian District, Beijing, 100083, China
| | - Beihai Zhou
- School of Energy & Environmental Engineering, University of Science and Technology Beijing, 30 Xueyuan Road, Haidian District, Beijing, 100083, China
| | - Rongfang Yuan
- School of Energy & Environmental Engineering, University of Science and Technology Beijing, 30 Xueyuan Road, Haidian District, Beijing, 100083, China
| | - Shuai Luo
- School of Energy & Environmental Engineering, University of Science and Technology Beijing, 30 Xueyuan Road, Haidian District, Beijing, 100083, China
| | - Ke Sun
- School of Environment, Beijing Normal University, No.19, Xinjiekouwai St, Haidian District, Beijing, 100875, PR China
| | - Fei Wang
- School of Environment, Beijing Normal University, No.19, Xinjiekouwai St, Haidian District, Beijing, 100875, PR China.
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20
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Wang X, Li S, Wu D, Fan A, Yao X, Lyu M, Chen G, Yang Y. Soil microbes deal with the nitrogen deposition enhanced phosphorus limitation by shifting community structure in an old-growth subtropical forest. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 928:172530. [PMID: 38631644 DOI: 10.1016/j.scitotenv.2024.172530] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/31/2023] [Revised: 03/27/2024] [Accepted: 04/14/2024] [Indexed: 04/19/2024]
Abstract
Elevated atmospheric nitrogen (N) deposition potentially enhances the degree of phosphorus (P) limitation in tropical and subtropical forests. However, it remains elusive that how soil microorganisms deal with the N deposition-enhanced P limitation. We collected soils experienced 9 years of manipulative N input at various rates (0, 40, and 80 kg N ha-1 y-1) in an old-growth subtropical natural forest. We measured soil total and available carbon (C), N and P, microbial biomass C, N and P, enzyme activities involved in C, N and P acquisition, microbial community structure, as well as net N and P mineralization. Additionally, we calculated element use efficiency and evaluated microbial homeostasis index. Our findings revealed that N input increased microbial biomass C:P (MBC:P) and N:P (MBN:P) ratios. The homeostasis indexes of MBC:P and MBN:P were 0.68 and 0.75, respectively, indicating stoichiometric flexibility. Interestingly, MBC:P and MBN:P correlated significantly with the fungi:bacteria ratio (F:B), not with N and P use efficiencies, net N and P mineralization, and enzyme C:P (EEAC:P) and N:P (EEAN:P) ratios. Furthermore, EEAC:P and EEAN:P correlated positively with F:B but did not negatively correlate with the C:P and N:P ratios of available resources and microbial biomass. The effects of N deposition on MBC:P, MBN:P and EEAN:P became insignificant when including F:B as a covariate. These findings suggest that microbes flexibly adapted to the N deposition enhanced P limitation by changing microbial community structure, which not only alter microbial biomass C:N:P stoichiometry, but also the enzyme production strategy. In summary, our research advances our understanding of how soil microorganisms deal with the N deposition-enhanced soil P limitation in subtropical forests.
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Affiliation(s)
- Xiaohong Wang
- Key Laboratory of Humid Subtropical Eco-geographical Process of Ministry of Education, School of Geographical Sciences, Fujian Normal University, Fuzhou 350117, China; Fujian Sanming Forest Ecosystem National Observation and Research Station, Fujian Normal University, Fuzhou 350117, China; State Key Laboratory of Humid Subtropical Mountain Ecology, Ministry of Science and Technology and Fujian Province Funded, Fuzhou 350117, China
| | - Shiyining Li
- Key Laboratory of Humid Subtropical Eco-geographical Process of Ministry of Education, School of Geographical Sciences, Fujian Normal University, Fuzhou 350117, China; Fujian Sanming Forest Ecosystem National Observation and Research Station, Fujian Normal University, Fuzhou 350117, China; State Key Laboratory of Humid Subtropical Mountain Ecology, Ministry of Science and Technology and Fujian Province Funded, Fuzhou 350117, China
| | - Dongmei Wu
- Key Laboratory of Humid Subtropical Eco-geographical Process of Ministry of Education, School of Geographical Sciences, Fujian Normal University, Fuzhou 350117, China; Fujian Sanming Forest Ecosystem National Observation and Research Station, Fujian Normal University, Fuzhou 350117, China; State Key Laboratory of Humid Subtropical Mountain Ecology, Ministry of Science and Technology and Fujian Province Funded, Fuzhou 350117, China
| | - Ailian Fan
- Key Laboratory of Humid Subtropical Eco-geographical Process of Ministry of Education, School of Geographical Sciences, Fujian Normal University, Fuzhou 350117, China; Fujian Sanming Forest Ecosystem National Observation and Research Station, Fujian Normal University, Fuzhou 350117, China; State Key Laboratory of Humid Subtropical Mountain Ecology, Ministry of Science and Technology and Fujian Province Funded, Fuzhou 350117, China
| | - Xiaodong Yao
- Key Laboratory of Humid Subtropical Eco-geographical Process of Ministry of Education, School of Geographical Sciences, Fujian Normal University, Fuzhou 350117, China; Fujian Sanming Forest Ecosystem National Observation and Research Station, Fujian Normal University, Fuzhou 350117, China; State Key Laboratory of Humid Subtropical Mountain Ecology, Ministry of Science and Technology and Fujian Province Funded, Fuzhou 350117, China
| | - Maokui Lyu
- Key Laboratory of Humid Subtropical Eco-geographical Process of Ministry of Education, School of Geographical Sciences, Fujian Normal University, Fuzhou 350117, China; Fujian Sanming Forest Ecosystem National Observation and Research Station, Fujian Normal University, Fuzhou 350117, China; State Key Laboratory of Humid Subtropical Mountain Ecology, Ministry of Science and Technology and Fujian Province Funded, Fuzhou 350117, China
| | - Guangshui Chen
- Key Laboratory of Humid Subtropical Eco-geographical Process of Ministry of Education, School of Geographical Sciences, Fujian Normal University, Fuzhou 350117, China; Fujian Sanming Forest Ecosystem National Observation and Research Station, Fujian Normal University, Fuzhou 350117, China; State Key Laboratory of Humid Subtropical Mountain Ecology, Ministry of Science and Technology and Fujian Province Funded, Fuzhou 350117, China.
| | - Yusheng Yang
- Key Laboratory of Humid Subtropical Eco-geographical Process of Ministry of Education, School of Geographical Sciences, Fujian Normal University, Fuzhou 350117, China; Fujian Sanming Forest Ecosystem National Observation and Research Station, Fujian Normal University, Fuzhou 350117, China; State Key Laboratory of Humid Subtropical Mountain Ecology, Ministry of Science and Technology and Fujian Province Funded, Fuzhou 350117, China
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21
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Zhou X, Chen X, Yang K, Guo X, Liu G, Zhuang G, Zheng G, Fortin D, Ma A. Vegetation restoration in an alpine meadow: Insights from soil microbial communities and resource limitation across soil depth. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 360:121129. [PMID: 38749128 DOI: 10.1016/j.jenvman.2024.121129] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2024] [Revised: 05/01/2024] [Accepted: 05/08/2024] [Indexed: 06/05/2024]
Abstract
Aboveground vegetation restoration shapes the soil microbial community structure and affects microbial resource acquisition. However, the changes in soil microbial resource limitation in subsoil during vegetation restoration are still unclear. In this study, the microbial community structure and resource limitation in an alpine meadow soil profile that had undergone natural restoration for short-term (4-year) and long-term (10-year) restoration in response to vegetation restoration were explored through high-throughput sequencing analysis and extracellular enzyme stoichiometry (EES). There was no significant difference in microbial composition and α diversity between short- and long-term restoration soils. Soil microorganisms in this alpine meadow were mainly limited by phosphorus. Carbon limitation of soil microorganisms was significantly decreased in each layer (0-15, 15-30, 30-45, 45-60, and 60-80 cm corresponding to L1, L2, L3, L4, and L5, respectively) of long-term restoration soils when compared to that of the short-term restoration soil layers, while phosphorus limitation of microorganisms in subsoil (60-80 cm) was significantly increased by 17.38%. Soil nutrients, pH, moisture content, and microbial composition are the main drivers of microbial resource limitation in restoration, and their effects on microbial resource limitation were different in short- and long-term restoration. Meanwhile, key microbial taxa have a significant impact on microbial resource limitation, especially in short-term restoration soils. This study suggested that vegetation restoration significantly affected soil microbial resource limitation, and could alleviate microbial resource limitations by adding nutrients, thus accelerating the process of vegetation restoration in alpine ecosystems.
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Affiliation(s)
- Xiaorong Zhou
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Xianke Chen
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, 100049, China; Sino-Danish College, University of Chinese Academy of Sciences, Beijing, 101400, China; Sino-Danish Center for Education and Research, Beijing, 101400, China
| | - Kang Yang
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Xiaowei Guo
- Key Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, 810008, China
| | - Guohua Liu
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Guoqiang Zhuang
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Guodong Zheng
- School of Environmental Studies, China University of Geosciences, Wuhan, 430078, China
| | | | - Anzhou Ma
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, 100049, China.
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22
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Liao J, Dou Y, Wang B, Gunina A, Yang Y, An S, Chang SX. Soil stoichiometric imbalances constrain microbial-driven C and N dynamics in grassland. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 924:171655. [PMID: 38492605 DOI: 10.1016/j.scitotenv.2024.171655] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/28/2023] [Revised: 03/07/2024] [Accepted: 03/09/2024] [Indexed: 03/18/2024]
Abstract
Grassland restoration leads to excessive soils with carbon (C) and nitrogen (N) contents that are inadequate to fulfill the requirements of microorganisms. The differences in the stoichiometric ratios of these elements could limit the activity of microorganisms, which ultimately affects the microbial C, N use efficiencies (CUE, NUE) and the dynamics of soil C and N. The present study was aimed at quantifying the soil microbial nutrient limitation and exploring the mechanisms underlying microbial-induced C and N dynamics in chrono-sequence of restored grasslands. It was revealed that grassland restoration increased microbial C, N content, microbial C, N uptake, and microbial CUE and NUE, while the threshold elemental ratio (the C:N ratio) decreased, which is mainly due to the synergistic effect of the microbial biomass and enzymatic stoichiometry imbalance after grassland restoration. Finally, we present a framework for the nutrient limitation strategies that stoichiometric imbalances constrain microbial-driven C and N dynamics. These results are the direct evidence of causal relations between stoichiometric ratios, microbial responses, and soil C, N cycling.
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Affiliation(s)
- Jiaojiao Liao
- State Key Laboratory of Loess and Quaternary Geology, Institute of Earth Environment, Chinese Academy of Sciences, Xi'an 710061, China; State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation, Ministry of Water Resources, CAS, Yangling 712100, China
| | - Yanxing Dou
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation, Ministry of Water Resources, CAS, Yangling 712100, China.
| | - Baorong Wang
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation, Ministry of Water Resources, CAS, Yangling 712100, China
| | - Anna Gunina
- Department of Environmental Chemistry, University of Kassel, Witzenhausen, Germany
| | - Yang Yang
- State Key Laboratory of Loess and Quaternary Geology, Institute of Earth Environment, Chinese Academy of Sciences, Xi'an 710061, China; National Observation and Research Station of Earth Critical Zone on the Loess Plateau, Xi'an, Shaanxi 710061, China.
| | - Shaoshan An
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation, Ministry of Water Resources, CAS, Yangling 712100, China.
| | - Scott X Chang
- Department of Renewable Resources, University of Alberta, Edmonton T6G 2E3, Canada.
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Liu X, Jia Q, Sun D, Zhang J, Zheng H, Chen Y. Influence of nitrogen substitution at an equivalent total nitrogen level on bacterial and fungal communities, as well as enzyme activities of the ditch bottom soil in a rice-fish coculture system. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2024; 104:4206-4217. [PMID: 38436513 DOI: 10.1002/jsfa.13302] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2023] [Revised: 12/23/2023] [Accepted: 12/26/2023] [Indexed: 03/05/2024]
Abstract
BACKGROUND Rice-fish coculture system (RFS) operates through effectively utilizing water and land resources in a complementary form, but it requires more efficient utilization of fertilizer and feed without compromising rice yield. However, the knowledge of how to regulate the proportion of nitrogen (N) supplied from fertilizer and feed at an equivalent total N level to improve the benefits of RFS remains limited. Therefore, four treatments (S0: RFS with 0% N from fertilizer and 100% N from feed; S25: RFS with 25% N from fertilizer and 75% N from feed; S50: RFS with 50% N from fertilizer and 50% N from feed; S75: RFS with 75% N from fertilizer and 25% N from feed) were conducted to assess the variation of ditch bottom soil properties, microbial communities and enzyme activities, as well as to obtain the optimal ratio of N supplied from fish feed and fertilizer. RESULTS The experiments showed that the contents of soil organic matter, total carbon and total N, and the activities of urease, N-acetyl-β-D-glucosaminidase, protease, β-1,4-glucosidase and catalase in the ditch bottom soil significantly reduced in S25 treatment, compared with the other three treatments. Ammonium N content decreased with increasing percentage of the basal fertilizer, whereas nitrate N content and pH value showed an adverse trend. However, the bacterial and fungal communities were unaffected by the ratio shifts between fertilizer-N and feed-N, but their dominant phyla were influenced by the ditch bottom soil N level. Moreover, the bacterial community composition was positively related to nitrate N, whereas fungal diversity was positively correlated with pH, ammonium N and nitrate N, and urease. We also found that the treatment of N input with 25% N from fertilizer and 75% N from feed can reduce N deposition in the ditch bottom soil in the rice-fish coculture system. CONCLUSION Our findings indicate that under the equivalent total N input level, the relative higher ratio of N from fish feed increased (S0 treatment) or reduced (S25 treatment) the deposition of N in the ditch bottom soil, and improved fish production, but decreased rice yield; while the higher ratio of N from basal fertilizer increased the transportation of nutrients into the ditch bottom soil and rice yield, but reduced fish production. So when considering multi-balance and multiple benefits, we recommend that a selective substitution ratio within 50% ~ 75% from fish feed to substitute for the basal fertilizer under the equivalent total N input may achieve a good balance of rice and fish production improvement, and reduce nutrients wastage to the ditch bottom, as well as alleviate the potential of non-point source pollution. This study also provides an evidence for regulating and optimizing the ratio of N supplied from fertilizer and fish feed at an equivalent total N level through monitoring the nutrient accumulation in ditch bottom soil in the rice-fish coculture system. © 2024 Society of Chemical Industry.
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Affiliation(s)
- Xing Liu
- Guangdong Engineering Technology Research Center of Modern Eco-agriculture and Circular Agriculture, South China Agricultural University, Guangzhou, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangdong Provincial Key Laboratory of Eco-circular Agriculture, South China Agricultural University, Guangzhou, China
- Department of Ecology, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, China
| | - Qi Jia
- Guangdong Engineering Technology Research Center of Modern Eco-agriculture and Circular Agriculture, South China Agricultural University, Guangzhou, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangdong Provincial Key Laboratory of Eco-circular Agriculture, South China Agricultural University, Guangzhou, China
- Department of Ecology, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, China
| | - Daolin Sun
- Guangdong Engineering Technology Research Center of Modern Eco-agriculture and Circular Agriculture, South China Agricultural University, Guangzhou, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangdong Provincial Key Laboratory of Eco-circular Agriculture, South China Agricultural University, Guangzhou, China
- Department of Ecology, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, China
| | - Jiaen Zhang
- Guangdong Engineering Technology Research Center of Modern Eco-agriculture and Circular Agriculture, South China Agricultural University, Guangzhou, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangdong Provincial Key Laboratory of Eco-circular Agriculture, South China Agricultural University, Guangzhou, China
- Department of Ecology, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, China
- Key Laboratory of Agro-Environment in the Tropics, Ministry of Agriculture and Rural Affairs, South China Agricultural University, Guangzhou, China
| | - Hongjun Zheng
- Guangdong Engineering Technology Research Center of Modern Eco-agriculture and Circular Agriculture, South China Agricultural University, Guangzhou, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangdong Provincial Key Laboratory of Eco-circular Agriculture, South China Agricultural University, Guangzhou, China
- Department of Ecology, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, China
| | - Yuting Chen
- Guangdong Engineering Technology Research Center of Modern Eco-agriculture and Circular Agriculture, South China Agricultural University, Guangzhou, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangdong Provincial Key Laboratory of Eco-circular Agriculture, South China Agricultural University, Guangzhou, China
- Department of Ecology, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, China
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24
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Zhao H, Zhang S, Yang W, Xia F, Guo H, Tan Q. Coupling and decoupling of soil carbon and nutrients cycles at different salinity levels in a mangrove wetland: Insights from CUE and enzymatic stoichiometry. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 922:171039. [PMID: 38369143 DOI: 10.1016/j.scitotenv.2024.171039] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2023] [Revised: 01/17/2024] [Accepted: 02/15/2024] [Indexed: 02/20/2024]
Abstract
Soil carbon (C), nitrogen (N), and phosphorus (P) cycling, in conjunction with microbial metabolism, varies significantly with salinity in coastal areas. However, microbial metabolism limitation on salinity levels has received limited attention. Based on soil microbial carbon use efficiency and enzymatic stoichiometry, microbial nutrient limitation characteristics of soil microbial communities in different salinity levels (4.45 mS·cm-1 - 17.25 mS·cm-1) in a subtropical mangrove wetland were investigated. Compared to low-salinity levels, the activity of soil C-acquiring enzyme activities, enzymatic C:N ratios and enzymatic C:P ratios decreased with medium salinity levels and high salinity levels. Soil microbial metabolism was primarily constrained by C and N at different salinity levels. Boosted regression tree analysis revealed that abiotic factors had the greatest influence on C and N limitation of microbial metabolism at different salinity levels. This study underscores the significance of salinity in microbial metabolic processes and enhances our understanding of how future salinity changes induced by rising sea levels will affect soil carbon and nutrient cycling in coastal wetlands.
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Affiliation(s)
- Haixiao Zhao
- Guangdong Provincial Key Laboratory of Water Quality Improvement and Ecological Restoration for Watersheds, School of Ecology, Environment and Resources, Guangdong University of Technology, Guangzhou 510006, China
| | - Sibo Zhang
- Guangdong Provincial Key Laboratory of Water Quality Improvement and Ecological Restoration for Watersheds, School of Ecology, Environment and Resources, Guangdong University of Technology, Guangzhou 510006, China
| | - Wei Yang
- Department of Ecological Sciences and Engineering, Chongqing University, Chongqing 400045, PR China
| | - Feiyang Xia
- Guangdong Provincial Key Laboratory of Water Quality Improvement and Ecological Restoration for Watersheds, School of Ecology, Environment and Resources, Guangdong University of Technology, Guangzhou 510006, China
| | - Hongjiang Guo
- Guangdong Provincial Key Laboratory of Water Quality Improvement and Ecological Restoration for Watersheds, School of Ecology, Environment and Resources, Guangdong University of Technology, Guangzhou 510006, China
| | - Qian Tan
- Guangdong Provincial Key Laboratory of Water Quality Improvement and Ecological Restoration for Watersheds, School of Ecology, Environment and Resources, Guangdong University of Technology, Guangzhou 510006, China.
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Song Y, Song T, An Y, Shan L, Su X, Yu S. Soil ecoenzyme activities coupled with soil properties and plant biomass strongly influence the variation in soil organic carbon components in semi-arid degraded wetlands. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 922:171361. [PMID: 38428614 DOI: 10.1016/j.scitotenv.2024.171361] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/17/2023] [Revised: 02/17/2024] [Accepted: 02/27/2024] [Indexed: 03/03/2024]
Abstract
Wetland degradation can induce alterations in plant biomass, soil properties, and soil ecoenzyme activities, consequently influencing soil organic carbon components. Despite extensive investigations into the relationships among plant characteristics, soil properties, and soil organic carbon components, the enzymatic mechanisms underlying changes in soil organic carbon components, particularly the impact and contribution of ecoenzyme activities, remain poorly understood. This study compared the soil organic carbon components at a depth of 0-20 cm in wetlands in the semi-arid western Songnen Plain under different degradation levels and explored plant biomass, soil properties, and soil ecoenzyme activities. The results showed that the soil total organic carbon, labile organic carbon, and recalcitrant organic carbon contents in the degraded wetlands were generally lower than those in the non-degraded wetlands. Furthermore, the soil nutrient contents and soil β-1,4-glucosidase, L-leucine aminopeptidase, and acid phosphatase activities were also lower in the degraded wetlands than in the non-degraded wetlands. Vector analysis of enzymatic stoichiometry revealed that wetland degradation did not increase microbial carbon limitation. The soil organic carbon components showed significant positive correlations with plant biomass, soil water content, soil total nitrogen, soil total phosphorus, as well as soil ecoenzyme activities. Variation partitioning analysis revealed that plant biomass, soil properties, soil ecoenzyme activities collectively accounted for 78.5 % variation in soil organic carbon components, among which plant biomass, soil properties, soil ecoenzyme activities, and their interactions explaining 4.2 %, 8.0 %, 7.9 %, and 24.5 % of the variation, respectively. Therefore, the impact of soil ecoenzyme activities and soil properties on soil organic carbon component changes was greater than that of plant biomass, with the interaction of these three factors playing a crucial role in soil organic carbon formation. This study provides a theoretical basis for scientifically evaluating the carbon sink function of degraded wetland soil and preserving the wetland soil carbon pool.
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Affiliation(s)
- Yazhi Song
- Key Laboratory of Groundwater Resources and Environment (Jilin University), Ministry of Education, Changchun 130026, China; Jilin Provincial Key Laboratory of Water Resources and Environment, Jilin University, Changchun 130026, China
| | - Tiejun Song
- Key Laboratory of Groundwater Resources and Environment (Jilin University), Ministry of Education, Changchun 130026, China; Jilin Provincial Key Laboratory of Water Resources and Environment, Jilin University, Changchun 130026, China.
| | - Yu An
- Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China
| | - Liping Shan
- Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China
| | - Xiaosi Su
- Key Laboratory of Groundwater Resources and Environment (Jilin University), Ministry of Education, Changchun 130026, China; Jilin Provincial Key Laboratory of Water Resources and Environment, Jilin University, Changchun 130026, China
| | - Shuiduo Yu
- Key Laboratory of Groundwater Resources and Environment (Jilin University), Ministry of Education, Changchun 130026, China; Jilin Provincial Key Laboratory of Water Resources and Environment, Jilin University, Changchun 130026, China
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26
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Li Y, Yan Q, Wang J, Shao M, Li Z, Jia H. Biodegradable plastics fragments induce positive effects on the decomposition of soil organic matter. JOURNAL OF HAZARDOUS MATERIALS 2024; 468:133820. [PMID: 38382339 DOI: 10.1016/j.jhazmat.2024.133820] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Revised: 02/05/2024] [Accepted: 02/15/2024] [Indexed: 02/23/2024]
Abstract
The escalating accumulation of plastic waste in ecosystems poses a significant health concern to soil environment, yet the environmental effects of plastics remains largely unexplored. Biodegradable plastics could offer a viable alternative to conventional persistent plastics, but our understanding of their potential benefits or detrimental effects on the decomposition of plant debris by soil biomass is limited. In this study, we conducted a year-long field experiment to examine the environmental response and impact on plant debris decomposition in the presence of varying quantities of persistent versus biodegradable plastics. Our findings indicate that the decomposition rate decreased by 2.8-4.9% for persistent plastics, while it increased by 1.3-4.2% for biodegradable plastics. Persistent plastics primarily induced adverse effects, including a reduction in soil nutrients, microbial diversity, bioturbation, enzyme activity, easily decomposable carbon, and microbial biomass carbon in plant debris. In contrast, biodegradable plastics resulted in beneficial effects such as an increase in enzyme activity, microbial biomass carbon, and easily decomposable carbon. We also observed that the decomposition rate of plant residues and nutrient release are closely associated with changes in the organic carbon chemical structure induced by different plastic film fragments. A significant shift in alkoxy carbon content facilitated the release of nutrients and soluble carbon, while modifications in carboxyl and aromatic carbon content hindered their release. Overall, our study reveals over one year that biodegradable plastics primarily induce positive effects on the decomposition of soil organic matter.
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Affiliation(s)
- Yanpei Li
- Key Laboratory of Low-carbon Green Agriculture in Northwestern China, Ministry of Agriculture and Rural Affairs, College of Natural Resources and Environment, Northwest A & F University, Yangling 712100, China
| | - Qing Yan
- Key Laboratory of Low-carbon Green Agriculture in Northwestern China, Ministry of Agriculture and Rural Affairs, College of Natural Resources and Environment, Northwest A & F University, Yangling 712100, China
| | - Jiao Wang
- CAS Engineering Laboratory for Yellow River Delta Modern Agriculture, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing 100101, China
| | - Ming'an Shao
- CAS Engineering Laboratory for Yellow River Delta Modern Agriculture, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing 100101, China
| | - Ziyan Li
- Key Laboratory of Low-carbon Green Agriculture in Northwestern China, Ministry of Agriculture and Rural Affairs, College of Natural Resources and Environment, Northwest A & F University, Yangling 712100, China
| | - Hanzhong Jia
- Key Laboratory of Low-carbon Green Agriculture in Northwestern China, Ministry of Agriculture and Rural Affairs, College of Natural Resources and Environment, Northwest A & F University, Yangling 712100, China.
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27
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Gargallo-Garriga A, Sardans J, Llusià J, Peguero G, Ayala-Roque M, Courtois EA, Stahl C, Urban O, Klem K, Nolis P, Pérez-Trujillo M, Parella T, Richter A, Janssens IA, Peñuelas J. Different profiles of soil phosphorous compounds depending on tree species and availability of soil phosphorus in a tropical rainforest in French Guiana. BMC PLANT BIOLOGY 2024; 24:278. [PMID: 38609866 PMCID: PMC11010349 DOI: 10.1186/s12870-024-04907-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2023] [Accepted: 03/13/2024] [Indexed: 04/14/2024]
Abstract
BACKGROUND The availability of soil phosphorus (P) often limits the productivities of wet tropical lowland forests. Little is known, however, about the metabolomic profile of different chemical P compounds with potentially different uses and about the cycling of P and their variability across space under different tree species in highly diverse tropical rainforests. RESULTS We hypothesised that the different strategies of the competing tree species to retranslocate, mineralise, mobilise, and take up P from the soil would promote distinct soil 31P profiles. We tested this hypothesis by performing a metabolomic analysis of the soils in two rainforests in French Guiana using 31P nuclear magnetic resonance (NMR). We analysed 31P NMR chemical shifts in soil solutions of model P compounds, including inorganic phosphates, orthophosphate mono- and diesters, phosphonates, and organic polyphosphates. The identity of the tree species (growing above the soil samples) explained > 53% of the total variance of the 31P NMR metabolomic profiles of the soils, suggesting species-specific ecological niches and/or species-specific interactions with the soil microbiome and soil trophic web structure and functionality determining the use and production of P compounds. Differences at regional and topographic levels also explained some part of the the total variance of the 31P NMR profiles, although less than the influence of the tree species. Multivariate analyses of soil 31P NMR metabolomics data indicated higher soil concentrations of P biomolecules involved in the active use of P (nucleic acids and molecules involved with energy and anabolism) in soils with lower concentrations of total soil P and higher concentrations of P-storing biomolecules in soils with higher concentrations of total P. CONCLUSIONS The results strongly suggest "niches" of soil P profiles associated with physical gradients, mostly topographic position, and with the specific distribution of species along this gradient, which is associated with species-specific strategies of soil P mineralisation, mobilisation, use, and uptake.
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Affiliation(s)
- Albert Gargallo-Garriga
- Global Change Research Institute, The Czech Academy of Sciences, Belidla 986/4a, Brno, CZ-60300, Czech Republic.
- Universitat Autònoma de Barcelona, Bellaterra, 08193, Spain.
| | - Jordi Sardans
- Global Ecology Unit, CSIC, CREAF-CSIC-UAB, Bellaterra, 08193, Catalonia, Spain
- CREAF, Cerdanyola del vallès, Barcelona, Catalonia, 08193, Spain
| | - Joan Llusià
- Global Ecology Unit, CSIC, CREAF-CSIC-UAB, Bellaterra, 08193, Catalonia, Spain
- CREAF, Cerdanyola del vallès, Barcelona, Catalonia, 08193, Spain
| | - Guille Peguero
- Global Ecology Unit, CSIC, CREAF-CSIC-UAB, Bellaterra, 08193, Catalonia, Spain
- CREAF, Cerdanyola del vallès, Barcelona, Catalonia, 08193, Spain
| | | | - Elodie A Courtois
- Centre of Excellence PLECO (Plants and Ecosystems), Department of Biology, University of Antwerp, Wilrijk, Belgium
- Laboratoire écologie, évolution, Interactions des Systèmes Amazoniens (LEEISA), Université de Guyane, CNRS, IFREMER, Cayenne, France
| | - Clément Stahl
- UMR ECOFOG - Ecologie des forêts de Guyane, Kourou cedex, 97379, France
| | - Otmar Urban
- Global Ecology Unit, CSIC, CREAF-CSIC-UAB, Bellaterra, 08193, Catalonia, Spain
| | - Karel Klem
- Global Ecology Unit, CSIC, CREAF-CSIC-UAB, Bellaterra, 08193, Catalonia, Spain
| | - Pau Nolis
- Servei de Ressonància Magnètica Nuclear, Universitat Autònoma de Barcelona, Bellaterra, 08193, Spain
| | - Miriam Pérez-Trujillo
- Servei de Ressonància Magnètica Nuclear, Universitat Autònoma de Barcelona, Bellaterra, 08193, Spain
| | - Teodor Parella
- Servei de Ressonància Magnètica Nuclear, Universitat Autònoma de Barcelona, Bellaterra, 08193, Spain
| | - Andreas Richter
- Centre for Microbiology and Environmental Systems Science, University of Vienna, Althanstr. 14, Vienna, 1090, Austria
| | - Ivan A Janssens
- Centre of Excellence PLECO (Plants and Ecosystems), Department of Biology, University of Antwerp, Wilrijk, Belgium
| | - Josep Peñuelas
- Global Ecology Unit, CSIC, CREAF-CSIC-UAB, Bellaterra, 08193, Catalonia, Spain
- CREAF, Cerdanyola del vallès, Barcelona, Catalonia, 08193, Spain
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28
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Shi J, Du Y, Zou J, Ma S, Mao S, Li W, Yu C. Mechanisms of microbial-driven changes in soil ecological stoichiometry around gold mines. JOURNAL OF HAZARDOUS MATERIALS 2024; 465:133239. [PMID: 38118202 DOI: 10.1016/j.jhazmat.2023.133239] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2023] [Revised: 11/04/2023] [Accepted: 12/10/2023] [Indexed: 12/22/2023]
Abstract
In this study, we used soils with different pollution and nutrient levels (non-polluted S1, highly polluted low-nutrient S2, and highly polluted high nutrient S3) around the gold mine tailing ponds, and combined with metabolic limitation modeling and macro-genomics approaches, aiming to investigate the relationship between soil microbial composition and soil eco-chemometrics characteristics under heavy metal stress. The results showed that heavy pollution resulted in reduced SOC, TN, microbial biomass, and with C- and P- acquisition (BG, CBH, ALP) as well as nitrogen limitation of soil microbial metabolism in soils (S2, S3). Further analysis by macrogenomics showed that heavy metal contamination led to an increase in α-microbial diversity and altered the composition of microbial communities in the soil. The cycling of C, N, and P nutrients was altered by affecting the relative abundance of Anaeromyxobacter, Steroidobacter, Bradyrhizobium, Acidobacterium, Limnochorda (predominantly in the Ascomycetes and Acidobacteria phyla), with the most pronounced effect on the composition of microorganisms synthesizing C-acquiring enzymes, and heavy metals and pH were the main influences on ecological stoichiometry. The results of this study are useful for understanding the sustainability of ecological remediation in heavy metal contaminated areas and for developing ecological restoration strategies.
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Affiliation(s)
- Jinshuai Shi
- School of Chemical & Environmental Engineering, China University of Mining and Technology (Beijing), Beijing 100083, China
| | - Yanbin Du
- School of Chemical & Environmental Engineering, China University of Mining and Technology (Beijing), Beijing 100083, China
| | - Jiacheng Zou
- School of Chemical & Environmental Engineering, China University of Mining and Technology (Beijing), Beijing 100083, China
| | - Suya Ma
- School of Chemical & Environmental Engineering, China University of Mining and Technology (Beijing), Beijing 100083, China
| | - Shuaixian Mao
- School of Chemical & Environmental Engineering, China University of Mining and Technology (Beijing), Beijing 100083, China
| | - Wenyao Li
- School of Chemical & Environmental Engineering, China University of Mining and Technology (Beijing), Beijing 100083, China
| | - Caihong Yu
- School of Chemical & Environmental Engineering, China University of Mining and Technology (Beijing), Beijing 100083, China.
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29
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Cui H, He C, Zheng W, Jiang Z, Yang J. Effects of nitrogen addition on rhizosphere priming: The role of stoichiometric imbalance. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 914:169731. [PMID: 38163589 DOI: 10.1016/j.scitotenv.2023.169731] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2023] [Revised: 12/24/2023] [Accepted: 12/26/2023] [Indexed: 01/03/2024]
Abstract
Nitrogen (N) input has a significant impact on the availability of carbon (C), nitrogen (N), and phosphorus (P) in the rhizosphere, leading to an imbalanced stoichiometry in microbial demands. This imbalance can result in energy or nutrient limitations, which, in turn, affect C dynamics during plant growth. However, the precise influence of N addition on the C:N:P imbalance ratio and its subsequent effects on rhizosphere priming effects (RPEs) remain unclear. To address this gap, we conducted a 75-day microcosm experiment, varying N addition rates (0, 150, 300 kg N ha-1), to examine how microbes regulate RPE by adapting to stoichiometry and maintaining homeostasis in response to N addition, using the 13C natural method. Our result showed that N input induced a stoichiometric imbalance in C:N:P, leading to P or C limitation for microbes during plant growth. Microbes responded by adjusting enzymatic stoichiometry and functional taxa to preserve homeostasis, thereby modifying the threshold element ratios (TERs) to cope with the C:N:P imbalance. Microbes adapted to the stoichiometric imbalance by reducing TER, which was attributed to a reduction in carbon use efficiency. Consequently, we observed higher RPE under P limitation, whereas the opposite trend was observed under C or N limitation. These results offer novel insights into the microbial regulation of RPE variation under different soil nutrient conditions and contribute to a better understanding of soil C dynamics.
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Affiliation(s)
- Hao Cui
- Institute of Environment Pollution Control and Treatment, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, Zhejiang, China
| | - Chao He
- Institute of Environment Pollution Control and Treatment, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, Zhejiang, China
| | - Weiwei Zheng
- Institute of Environment Pollution Control and Treatment, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, Zhejiang, China
| | - Zhenhui Jiang
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou 311300, Zhejiang, China.
| | - Jingping Yang
- Institute of Environment Pollution Control and Treatment, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, Zhejiang, China.
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30
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Abay P, Gong L, Luo Y, Zhu H, Ding Z. Soil extracellular enzyme stoichiometry reveals the nutrient limitations in soil microbial metabolism under different carbon input manipulations. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 913:169793. [PMID: 38181962 DOI: 10.1016/j.scitotenv.2023.169793] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2023] [Revised: 12/26/2023] [Accepted: 12/28/2023] [Indexed: 01/07/2024]
Abstract
Changes in the quality and quantity of litter and root inputs due to climate change and human activities can influence below-ground biogeochemical processes in forest ecosystems. However, it is unclear whether and how much aboveground litter and root inputs affect soil microbial metabolism and nutrient limitation mechanisms. In this study, according to a 4-years field manipulation experiment, litter and root manipulations (control (CK), double litter input (DL), no litter (NL), no root (NR), and no inputs (NI)) were set up to analyze the extracellular enzyme activities and stoichiometric ratios characteristics of 0-10 cm and 10-20 cm soils, explore the metabolic limitations of microorganisms, and clarify the main driving factors restricting nutrient limitation. The results showed that the enzyme activities associated with the C cycling (β-1,4-glucosidase (BG), cellulose disaccharide hydrolase (CBH)) and N cycling (β-1,4-N-acetylglucosaminidase (NAG), leucine aminopeptidase (LAP)) in DL treatment were significantly higher than those in NR treatment. Moreover, enzyme activities related to P cycling are significantly higher in comparison to other treatments. The acid phosphatase (AP), which is related to the P cycle, showed the highest activity under NR treatment. In addition, there was no significant difference in soil microbial metabolic limitation by the different carbon inputs, which did not change the original nutrient limitation pattern. The main drivers of microbial nutrient metabolic limitation included soil physicochemical properties, soil total nutrients, and available nutrients, among which soil SWC and pH presented the greatest influence on microbial C limitation and soil total nutrients showed the greatest influence on microbial N limitation. Changes in soil carbon input altered soil extracellular enzyme activities and their stoichiometric ratios by affecting soil physicochemical properties, total nutrients. This study provides data for the understanding of material cycling in forest ecosystems under environmental change.
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Affiliation(s)
- Peryzat Abay
- College of Ecology and Environment, Xinjiang University, Urumqi, China; Key Laboratory of Oasis Ecology, Ministry of Education, Urumqi, China
| | - Lu Gong
- College of Ecology and Environment, Xinjiang University, Urumqi, China; Key Laboratory of Oasis Ecology, Ministry of Education, Urumqi, China.
| | - Yan Luo
- College of Ecology and Environment, Xinjiang University, Urumqi, China; Key Laboratory of Oasis Ecology, Ministry of Education, Urumqi, China
| | - Haiqiang Zhu
- College of Ecology and Environment, Xinjiang University, Urumqi, China; Key Laboratory of Oasis Ecology, Ministry of Education, Urumqi, China
| | - Zhaolong Ding
- College of Ecology and Environment, Xinjiang University, Urumqi, China; Key Laboratory of Oasis Ecology, Ministry of Education, Urumqi, China
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31
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Okada KI, Yokoyama D, Aiba SI, Kitayama K. Exploration capacity versus specific enzymatic activity of ectomycorrhizas in response to primary productivity and soil phosphorus availability in Bornean tropical rainforests. Sci Rep 2024; 14:2842. [PMID: 38310149 PMCID: PMC10838334 DOI: 10.1038/s41598-024-53234-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2023] [Accepted: 01/30/2024] [Indexed: 02/05/2024] Open
Abstract
Ectomycorrhizal (ECM) fungi are functionally important in biogeochemical cycles in tropical ecosystems. Extracellular enzymatic activity of ECM on a ground-area basis is the product of two attributes; exploration capacity (ECM surface-area) and specific enzymatic activity. Here, we elucidated which attribute better explained the ECM enzymatic activity in response to different levels of soil phosphorus (P) and Nitrogen (N) availability in five Bornean tropical rainforests. We determined the surface area of ECM root tips as well as the enzymatic activities per ECM surface area for carbon (C), N and P degrading enzymes in each site. We evaluated the relationship of ECM enzyme activities with the resource availabilities of C (Above-ground net primary production; ANPP), N, and P of ECM by a generalized linear mixed model. The ECM enzymatic activities on a ground-area basis were more significantly determined by specific enzymatic activity than by the exploration capacity. Specific enzymatic activities were generally negatively affected by C (ANPP) and soil P availability. ECM fungi enhance the specific enzyme activity rather than the exploration capacity to maintain the capacity of nutrient acquisition. The less dependence of ECM fungi on the exploration capacity in these forests may be related to the limitation of C supply from host trees. We highlighted the adaptive mechanisms of ECM fungi on nutrient acquisition in tropical ecosystems through the response of enzymatic activity to nutrient availability across the elements.
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Affiliation(s)
- Kei-Ichi Okada
- Faculty of Bioindustry, Tokyo University of Agriculture, Abashiri, Japan.
- Graduate School of Environment and Information Sciences, Yokohama National University, Yokohama, Japan.
- Graduate School of Agriculture, Kyoto University, Kyoto, Japan.
| | - Daiki Yokoyama
- Graduate School of Agriculture, Kyoto University, Kyoto, Japan
- Center for Sustainable Resource Science, RIKEN, Yokohama, Japan
| | - Shin-Ichiro Aiba
- Faculty of Environmental Earth Science, Hokkaido University, Sapporo, Japan
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32
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Chen Y, Li Y, Wang L, Duan Y, Cao W, Wang X, Li Y. Heterogeneity of leaf stoichiometry of different life forms along environmental transects in typical ecologically fragile areas of China. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 910:168495. [PMID: 37977372 DOI: 10.1016/j.scitotenv.2023.168495] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2023] [Revised: 10/20/2023] [Accepted: 11/09/2023] [Indexed: 11/19/2023]
Abstract
The coupling between carbon (C):nitrogen (N):phosphorus (P) stoichiometry in plant leaves is closely related to ecological functions such as photosynthesis, growth, and biogeochemical cycling. To explore the biogeographic patterns, nutrient limitations, and the relationships between leaf and soil stoichiometry, as well as the factors influencing leaf stoichiometry, we quantified community-level leaf C:N:P stoichiometry in trees, shrubs, and herbs along transects with a total length of about 4300 km. The leaf C:N:P ratios of trees, shrubs, and herbs were approximately 349:13:1, 267:14:1, and 226:12:1, respectively. Leaf C:N:P stoichiometry differed significantly (p < 0.05) among the life forms. Compared with global and Chinese scales, the C, N, and P concentrations were higher and C:N, C:P, and N:P ratios were lower. The leaf C:N:P stoichiometry patterns along a latitude gradient differed among life forms. There was no significant correlation between leaf N and soil total N, whereas leaf P of all three life forms increased significantly with increasing soil total P. Those results suggested a community-level N limitation for trees, shrubs, and herbs growth. Environmental factors explained 43.9, 26.5, and 6.1 % of leaf stoichiometric variations for trees, shrubs, and herbs, respectively. However, the key environmental driving factors gradually changed from climatic factors for trees and shrubs to soil factors for herbs. The results provide new insights into community-level biogeographical patterns and potential factors of leaf stoichiometry among plant life forms.
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Affiliation(s)
- Yun Chen
- Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; Naiman Desertification Research Station, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Tongliao 028300, China
| | - Yuqiang Li
- Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; Naiman Desertification Research Station, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Tongliao 028300, China; University of Chinese Academy of Sciences, Beijing 100049, China; Key Laboratory of Strategic Mineral Resources of the Upper Yellow River, Ministry of Natural Resources, Lanzhou 730000, China.
| | - Lilong Wang
- Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; Naiman Desertification Research Station, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Tongliao 028300, China
| | - Yulong Duan
- Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; Naiman Desertification Research Station, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Tongliao 028300, China
| | - Wenjie Cao
- Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; Naiman Desertification Research Station, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Tongliao 028300, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Xuyang Wang
- Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; Naiman Desertification Research Station, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Tongliao 028300, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yulin Li
- Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; Naiman Desertification Research Station, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Tongliao 028300, China
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33
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Xing W, Hu N, Li Z, Feng L, Zhang W, Du Preez G, Zhang H, Li D, Lu S, Chang SX, Zhang Q, Lou Y. Soil enzyme profile analysis for indicating decomposer micro-food web. IMETA 2024; 3:e161. [PMID: 38868509 PMCID: PMC10989158 DOI: 10.1002/imt2.161] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/29/2023] [Revised: 10/19/2023] [Accepted: 10/28/2023] [Indexed: 06/14/2024]
Abstract
Highly diverse exoenzymes mediate the energy flow from substrates to the multitrophic microbiota within the soil decomposer micro-food web. Here, we used a "soil enzyme profile analysis" approach to establish a series of enzyme profile indices; those indices were hypothesized to reflect micro-food web features. We systematically evaluated the shifts in enzyme profile indices in relation to the micro-food web features in the restoration of an abandoned cropland to a natural area. We found that enzymatic C:N stoichiometry and decomposability index were significantly associated with substrate availability. Furthermore, the higher Shannon diversity index in the exoenzyme profile, especially for the C-degrading hydrolase, corresponded to a greater microbiota community diversity. The increased complexity and stability of the exoenzyme network reflected similar changes with the micro-food web networks. In addition, the gross activity of the enzyme profile as a parameter for soil multifunctionality, effectively predicted the substrate content, microbiota community size, diversity, and network complexity. Ultimately, the proposed enzymic channel index was closely associated with the traditional decomposition channel indices derived from microorganisms and nematodes. Our results showed that soil enzyme profile analysis reflected very well the decomposer food web features. Our study has important implications for projecting future climate change or anthropogenic disturbance impacts on soil decomposer micro-food web features by using soil enzyme profile analysis.
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Affiliation(s)
- Wen Xing
- Guangxi Key Laboratory of Health Care Food Science and Technology, School of Food and Biological EngineeringHezhou UniversityHezhouChina
- Institute of Environment and Sustainable Development in AgricultureChinese Academy of Agricultural SciencesBeijingChina
| | - Ning Hu
- Guangxi Key Laboratory of Health Care Food Science and Technology, School of Food and Biological EngineeringHezhou UniversityHezhouChina
| | - Zhongfang Li
- Guangxi Key Laboratory of Health Care Food Science and Technology, School of Food and Biological EngineeringHezhou UniversityHezhouChina
| | | | - Weidong Zhang
- Institute of Applied EcologyChinese Academy of SciencesShenyangChina
| | - Gerhard Du Preez
- Unit for Environmental Sciences and ManagementNorth‐West UniversityPotchefstroomSouth Africa
| | - Huimin Zhang
- Institute of Agricultural Resources and Regional PlanningChinese Academy of Agricultural SciencesBeijingChina
| | - Dongchu Li
- Institute of Agricultural Resources and Regional PlanningChinese Academy of Agricultural SciencesBeijingChina
| | | | - Scott X. Chang
- Department of Renewable ResourcesUniversity of AlbertaEdmontonAlbertaCanada
| | - Qingwen Zhang
- Institute of Environment and Sustainable Development in AgricultureChinese Academy of Agricultural SciencesBeijingChina
| | - Yilai Lou
- Institute of Environment and Sustainable Development in AgricultureChinese Academy of Agricultural SciencesBeijingChina
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Michaletz ST, Garen JC. Hotter is not (always) better: Embracing unimodal scaling of biological rates with temperature. Ecol Lett 2024; 27:e14381. [PMID: 38332503 DOI: 10.1111/ele.14381] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2023] [Revised: 01/15/2024] [Accepted: 01/21/2024] [Indexed: 02/10/2024]
Abstract
Rate-temperature scaling relationships have fascinated biologists for nearly two centuries and are increasingly important in our era of global climate change. These relationships are hypothesized to originate from the temperature-dependent kinetics of rate-limiting biochemical reactions of metabolism. Several prominent theories have formalized this hypothesis using the Arrhenius model, which characterizes a monotonic temperature dependence using an activation energy E. However, the ubiquitous unimodal nature of biological temperature responses presents important theoretical, methodological, and conceptual challenges that restrict the promise for insight, prediction, and progress. Here we review the development of key hypotheses and methods for the temperature-scaling of biological rates. Using simulations, we examine the constraints of monotonic models, illustrating their sensitivity to data nuances such as temperature range and noise, and their tendency to yield variable and underestimated E, with critical consequences for climate change predictions. We also evaluate the behaviour of two prominent unimodal models when applied to incomplete and noisy datasets. We conclude with recommendations for resolving these challenges in future research, and advocate for a shift to unimodal models that better characterize the full range of biological temperature responses.
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Affiliation(s)
- Sean T Michaletz
- Department of Botany, The University of British Columbia, Vancouver, British Columbia, Canada
- Biodiversity Research Centre, The University of British Columbia, Vancouver, British Columbia, Canada
| | - Josef C Garen
- Department of Botany, The University of British Columbia, Vancouver, British Columbia, Canada
- Biodiversity Research Centre, The University of British Columbia, Vancouver, British Columbia, Canada
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Yang H, Zhang X, Yan C, Zhou R, Li J, Liu S, Wang Z, Zhou J, Zhu L, Jia H. Novel Insights into the Promoted Accumulation of Nitro-Polycyclic Aromatic Hydrocarbons in the Roots of Legume Plants. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2024; 58:2058-2068. [PMID: 38230546 DOI: 10.1021/acs.est.3c08255] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/18/2024]
Abstract
Substituted polycyclic aromatic hydrocarbons (sub-PAHs) are receiving increased attention due to their high toxicity and ubiquitous presence. However, the accumulation behaviors of sub-PAHs in crop roots remain unclear. In this study, the accumulation mechanism of sub-PAHs in crop roots was systematically disclosed by hydroponic experiments from the perspectives of utilization, uptake, and elimination. The obtained results showed an interesting phenomenon that despite not having the strongest hydrophobicity among the five sub-PAHs, nitro-PAHs (including 9-nitroanthracene and 1-nitropyrene) displayed the strongest accumulation potential in the roots of legume plants, including mung bean and soybean. The nitrogen-deficient experiments, inhibitor experiments, and transcriptomics analysis reveal that nitro-PAHs could be utilized by legumes as a nitrogen source, thus being significantly absorbed by active transport, which relies on amino acid transporters driven by H+-ATPase. Molecular docking simulation further demonstrates that the nitro group is a significant determinant of interaction with an amino acid transporter. Moreover, the depuration experiments indicate that the nitro-PAHs may enter the root cells, further slowing their elimination rates and enhancing the accumulation potential in legume roots. Our results shed light on a previously unappreciated mechanism for root accumulation of sub-PAHs, which may affect their biogeochemical processes in soils.
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Affiliation(s)
- Huiqiang Yang
- College of Natural Resources and Environment, Northwest A&F University, Yangling 712100, China
- Key Laboratory of Low-Carbon Green Agriculture in Northwestern China, Ministry of Agriculture and Rural Affairs, Yangling 712100, China
| | - Xianglei Zhang
- College of Natural Resources and Environment, Northwest A&F University, Yangling 712100, China
- Key Laboratory of Low-Carbon Green Agriculture in Northwestern China, Ministry of Agriculture and Rural Affairs, Yangling 712100, China
| | - Chenghe Yan
- College of Natural Resources and Environment, Northwest A&F University, Yangling 712100, China
- Key Laboratory of Low-Carbon Green Agriculture in Northwestern China, Ministry of Agriculture and Rural Affairs, Yangling 712100, China
| | - Run Zhou
- College of Natural Resources and Environment, Northwest A&F University, Yangling 712100, China
- Key Laboratory of Low-Carbon Green Agriculture in Northwestern China, Ministry of Agriculture and Rural Affairs, Yangling 712100, China
| | - Jiahui Li
- College of Natural Resources and Environment, Northwest A&F University, Yangling 712100, China
- Key Laboratory of Low-Carbon Green Agriculture in Northwestern China, Ministry of Agriculture and Rural Affairs, Yangling 712100, China
| | - Siqian Liu
- College of Natural Resources and Environment, Northwest A&F University, Yangling 712100, China
- Key Laboratory of Low-Carbon Green Agriculture in Northwestern China, Ministry of Agriculture and Rural Affairs, Yangling 712100, China
| | - Zhiqiang Wang
- College of Natural Resources and Environment, Northwest A&F University, Yangling 712100, China
- Key Laboratory of Low-Carbon Green Agriculture in Northwestern China, Ministry of Agriculture and Rural Affairs, Yangling 712100, China
| | - Jian Zhou
- College of Natural Resources and Environment, Northwest A&F University, Yangling 712100, China
- Key Laboratory of Low-Carbon Green Agriculture in Northwestern China, Ministry of Agriculture and Rural Affairs, Yangling 712100, China
| | - Lingyan Zhu
- College of Natural Resources and Environment, Northwest A&F University, Yangling 712100, China
- Key Laboratory of Low-Carbon Green Agriculture in Northwestern China, Ministry of Agriculture and Rural Affairs, Yangling 712100, China
- Key Laboratory of Pollution Processes and Environmental Criteria, Ministry of Education, Tianjin Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai University, Tianjin 300071, China
| | - Hanzhong Jia
- College of Natural Resources and Environment, Northwest A&F University, Yangling 712100, China
- Key Laboratory of Low-Carbon Green Agriculture in Northwestern China, Ministry of Agriculture and Rural Affairs, Yangling 712100, China
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36
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Zhang Z, Wang W, Liu J, Wu H. Discrepant responses of bacterial community and enzyme activities to conventional and biodegradable microplastics in paddy soil. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 909:168513. [PMID: 37977392 DOI: 10.1016/j.scitotenv.2023.168513] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2023] [Revised: 11/09/2023] [Accepted: 11/09/2023] [Indexed: 11/19/2023]
Abstract
The prevalence of microplastics in soil ecosystems has raised concerns about their potential effects on soil properties. As promising alternatives to conventional plastics, biodegradable plastics have been increasingly applied in agricultural activities, which may release microplastics into the soil due to incomplete degradation. Compared to conventional microplastics, biodegradable microplastics in soil may induce different impacts on soil microbial properties, which have yet to be well studied. Through a 41-day microcosm experiment, we evaluated the differential effects of conventional (polypropylene, PP) and biodegradable (polylactic acid, PLA) microplastics on the geochemical properties, enzyme activities, and microbial community structure in paddy soil. Adding PLA or PP microplastics into soil significantly increased pH values and altered the contents of carbon and nitrogen nutrients. Exposure to microplastics significantly increased the activity of fluorescein diacetate hydrolase, but had varying effects on the activities of urease, sucrase, and alkaline phosphatase depending on microplastic types and doses. The addition of microplastics also influenced the structure of soil bacterial community, with Proteobacteria, Actinobacteriota, and Acidobacteriota being the dominant phyla. Significant differences in the genera of Pseudarthrobacter, Acidothermus, Bacillus, Aquisphaera, and Massilia were observed between treatments. Results of structural equation modeling (SEM) demonstrated that changes in soil carbon and nitrogen nutrients and pH values positively affected the bacterial community, while soil bacterial community as a whole exerted a negative impact on enzyme activities. FAPRPTAX analysis showed that the addition of microplastics altered the relative abundances of functional genes related to the metabolism of cellulose decomposition and ureolysis in paddy soil. Findings of this study clearly suggest that microplastic impacts on soil geochemical and microbial properties should be an integral part of future risk assessment and that to evaluate microplastic impacts, both the concentration and polymer type must be taken into account.
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Affiliation(s)
- Zhiyu Zhang
- State Key Laboratory of Black Soils Conservation and Utilization, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, 4888 Shengbei Street, Changchun 130012, China; Key Laboratory of Wetland Ecology and Environment, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, 4888 Shengbei Street, Changchun 130012, China; Jilin Normal University, 1301 Haifeng Street, Siping 136000, China
| | - Wenfeng Wang
- State Key Laboratory of Black Soils Conservation and Utilization, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, 4888 Shengbei Street, Changchun 130012, China; Key Laboratory of Wetland Ecology and Environment, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, 4888 Shengbei Street, Changchun 130012, China.
| | - Jiping Liu
- Jilin Normal University, 1301 Haifeng Street, Siping 136000, China
| | - Haitao Wu
- State Key Laboratory of Black Soils Conservation and Utilization, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, 4888 Shengbei Street, Changchun 130012, China; Key Laboratory of Wetland Ecology and Environment, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, 4888 Shengbei Street, Changchun 130012, China.
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37
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Qin W, Feng J, Zhang Q, Yuan X, Zhou H, Zhu B. Nitrogen and phosphorus addition mediate soil priming effects via affecting microbial stoichiometric balance in an alpine meadow. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 908:168350. [PMID: 37935262 DOI: 10.1016/j.scitotenv.2023.168350] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2023] [Revised: 11/02/2023] [Accepted: 11/03/2023] [Indexed: 11/09/2023]
Abstract
Priming effect (PE) plays a crucial role in regulating the decomposition of soil organic matter (SOM). Multiple empirical results have shown that nitrogen (N) and phosphorus (P) addition can significantly alter the direction and intensity of PE, which may significantly affect carbon turnover in grasslands, especially in alpine meadows that are sensitive to N and P enrichment. To evaluate the PE responses to N and/or P addition, we conducted an incubation experiment by adding 13C-labeled glucose and nutrient additions (+N, +P, and +NP) in soils collected from an alpine meadow. The soils were incubated for 30 days and soil/microbial properties and enzyme activities were measured. Partial correlation and linear regression analyses were then performed to investigate their correlations with PE. The results showed that mean PE intensity among all treatments was 0.61 mg C g-1 soil or 1.35 (ratio). Nitrogen addition increased PE intensity, which was attributed to the better match between soil resources and microbial demands and enhanced enzyme activities. However, the PE intensity in P-addition soils was lower than that in control soils. This discrepancy may be related to the P-induced decrease of N availability and stronger microbial C/N imbalance. No significant response of PE intensity to NP addition was detected, and this could be explained by the offset of positive N effects and negative P effects on microbial decomposition. In this experiment, N or P addition altered the PE intensity by mediating the match between soil C:N:P ratio and microbial demands, which supported the stoichiometric decomposition hypothesis. Overall, our study highlights the importance of considering the C, N and P coupling in regulating PE, and underscores the need for further investigation into the effects of soil P on microbial activity and SOM decomposition.
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Affiliation(s)
- Wenkuan Qin
- Institute of Ecology, College of Urban and Environmental Sciences, Key Laboratory for Earth Surface Processes of the Ministry of Education, Peking University, Beijing 100871, China
| | - Jiguang Feng
- Institute of Ecology, College of Urban and Environmental Sciences, Key Laboratory for Earth Surface Processes of the Ministry of Education, Peking University, Beijing 100871, China
| | - Qiufang Zhang
- School of Geographical Sciences, Fujian Normal University, Fuzhou 350117, China
| | - Xia Yuan
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou 311121, China
| | - Huakun Zhou
- Qinghai Provincial Key Laboratory of Restoration Ecology of Cold Area, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining 810008, China
| | - Biao Zhu
- Institute of Ecology, College of Urban and Environmental Sciences, Key Laboratory for Earth Surface Processes of the Ministry of Education, Peking University, Beijing 100871, China.
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38
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Gao G, Li G, Liu M, Li P, Liu J, Ma S, Li D, Petropoulos E, Wu M, Li Z. Changes in soil stoichiometry, soil organic carbon mineralization and bacterial community assembly processes across soil profiles. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 903:166408. [PMID: 37597539 DOI: 10.1016/j.scitotenv.2023.166408] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2023] [Revised: 08/16/2023] [Accepted: 08/16/2023] [Indexed: 08/21/2023]
Abstract
Soil organic carbon (SOC) mineralization is essential to biogeochemical recycling in terrestrial ecosystem. However, the microbial mechanisms underlying the nutrient-induced SOC mineralization remain uncertain. Here, we investigated how SOC mineralization was linked to microbial assembly processes as well as soil nutrient availability and stoichiometric ratio in a paddy rice ecosystem at four soil profile levels. Our results showed a sharp decrease in SOC mineralization from topsoil (112.61-146.34 mg CO2 kg-1 day-1) to subsoil (33.51-61.41 mg CO2 kg-1 day-1). High-throughput sequencing showed that both abundance and diversity of specialist microorganisms (Chao1: 1244.30-1341.35) significantly increased along the soil profile, while the generalist microorganisms (Chao1: 427.67-616.15; Shannon: 7.46-7.97) showed the opposite trend. Correspondingly, the proportion of deterministic processes that regulate specialist (9.64-21.59 %) and generalist microorganisms (21.17-53.53 %) increased and decreased from topsoil to subsoil, respectively. Linear regression modeling and partial least squares path modeling indicated that SOC mineralization was primarily controlled by the assembly processes of specialist microorganisms, which was significantly mediated by available soil C:N:P stoichiometry. This study highlighted the importance of soil stoichiometry-mediated bacterial community assembly processes in regulating SOC mineralization. Our results have an important implication for the integration of bacterial community assembly processes into the prediction of SOC dynamics.
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Affiliation(s)
- Guozhen Gao
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Guilong Li
- Soil and Fertilizer & Resources and Environment Institute, Jiangxi Academy of Agricultural Sciences, Nanchang 330200, China
| | - Ming Liu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China; National Engineering and Technology Research Center for Red Soil Improvement, Ecological Experimental Station of Red Soil Academia Sinica, Yingtan 335211, China
| | - Pengfa Li
- Department of Microbiology, Key Lab of Microbiology for Agricultural Environment, Ministry of Agriculture, College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Jia Liu
- Soil and Fertilizer & Resources and Environment Institute, Jiangxi Academy of Agricultural Sciences, Nanchang 330200, China
| | - Shiyu Ma
- College of Life Sciences, Henan Agricultural University, Zhengzhou 450046, China
| | - Daming Li
- Jiangxi Institute Red Soil, Jinxian 331700, China
| | | | - Meng Wu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China; National Engineering and Technology Research Center for Red Soil Improvement, Ecological Experimental Station of Red Soil Academia Sinica, Yingtan 335211, China.
| | - Zhongpei Li
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China.
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39
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He C, Harindintwali JD, Cui H, Cui Y, Chen P, Mo C, Zhu Q, Zheng W, Alessi DS, Wang F, Jiang Z, Yang J. Deciphering the dual role of bacterial communities in stabilizing rhizosphere priming effect under intra-annual change of growing seasons. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 903:166777. [PMID: 37660826 DOI: 10.1016/j.scitotenv.2023.166777] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2023] [Revised: 08/31/2023] [Accepted: 08/31/2023] [Indexed: 09/05/2023]
Abstract
The rhizosphere priming effect (RPE) is a widely observed phenomenon affecting carbon (C) turnover in plant-soil systems. While multiple cropping and seasonal changes can have significant impacts on RPE, the mechanisms driving these processes are complex and not yet fully understood. Here, we planted maize in paddy soil during two growing seasons having substantial temperature differences [May-August (warm season, 26.6 °C) and September-November (cool season, 23.1 °C)] within the same calendar year in southern China to examine how seasonal changes affect RPEs and soil C. We identified sources of C emissions by quantifying the natural abundance of 13C and determined microbial metabolic limitations or efficiency and functional genes related to C cycling using an enzyme-based biogeochemical equilibrium model and high-throughput quantitative PCR-based chip technology, respectively. Results showed that microbial metabolism was mainly limited by phosphorus in the warm season, but by C in the cool season, resulting in positive RPEs in both growing seasons, but no significant differences (9.02 vs. 6.27 mg C kg-1 soil day-1). The RPE intensity remained stable as temperature increased (warm season compared to a cool season), which can be largely explained by the simultaneous increase in the abundance of functional genes related to both C degradation and fixation. Our study highlights the simultaneous response and adaptation of microbial communities to seasonal changes and hence contributes to an understanding and prediction of microbially mediated soil C turnover under multiple cropping systems.
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Affiliation(s)
- Chao He
- Institute of Environment Pollution Control and Treatment, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, Zhejiang, China
| | - Jean Damascene Harindintwali
- CAS Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Hao Cui
- Institute of Environment Pollution Control and Treatment, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, Zhejiang, China
| | - Yongxing Cui
- Sino-French Institute for Earth System Science, College of Urban and Environmental Sciences, Peking University, Beijing 100871, China
| | - Pengfei Chen
- Institute of Environment Pollution Control and Treatment, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, Zhejiang, China
| | - Chaoyang Mo
- Institute of Environment Pollution Control and Treatment, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, Zhejiang, China
| | - Qingyang Zhu
- State Key Laboratory of Plant Physiology and Biochemistry, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Weiwei Zheng
- Institute of Environment Pollution Control and Treatment, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, Zhejiang, China
| | - Daniel S Alessi
- Department of Earth and Atmospheric Sciences, University of Alberta, Edmonton, Alberta T6G 2E3, Canada
| | - Fang Wang
- CAS Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Zhenhui Jiang
- Institute of Environment Pollution Control and Treatment, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, Zhejiang, China.
| | - Jingping Yang
- Institute of Environment Pollution Control and Treatment, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, Zhejiang, China.
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40
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Keithley AE, Gomez-Alvarez V, Williams D, Ryu H, Lytle DA. Depth profiles of biological aerated contactors: Characterizing microbial activity treating reduced contaminants. JOURNAL OF WATER PROCESS ENGINEERING 2023; 56:1-11. [PMID: 38357328 PMCID: PMC10866302 DOI: 10.1016/j.jwpe.2023.104360] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/16/2024]
Abstract
The biological treatment process consisting of an aerated contactor and filter is effective for groundwaters containing elevated ammonia and other reduced contaminants, including iron, manganese, arsenic, and methane. Depth profiles characterizing microbial activity across aerated contactors are lacking. A 1-year pilot study comparing gravel- and ceramic-packed contactors was conducted, and media depth profile samples were collected at the conclusion of the study. Media and water samples also were collected from pilot-scale aerated contactors at 4 other water systems. Water quality, media surface metals concentrations, and a suite of biofilm parameters were analyzed. Media surface metals concentrations were greatest at the influent end. ATP concentrations, extracellular polymeric substances, and extracellular enzyme activities tended to be similar across depth. Bacteria and functional genes involved in contaminant oxidation co-occurred and tended to decrease across depth, but were not correlated to the media metals concentration. Microbial community composition changed with depth, and the diversity either decreased or remained similar. The microbial activity profiles through aerated contactors differed from what is typically reported for groundwater biofilters, suggesting that the different reactor flow and dissolved oxygen profiles impacted the microbial community.
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Affiliation(s)
- Asher E. Keithley
- U.S. Environmental Protection Agency, ORD, CESER, WID, Cincinnati, OH 45268, United States
| | - Vicente Gomez-Alvarez
- U.S. Environmental Protection Agency, ORD, CESER, WID, Cincinnati, OH 45268, United States
| | - Daniel Williams
- U.S. Environmental Protection Agency, ORD, CESER, WID, Cincinnati, OH 45268, United States
| | - Hodon Ryu
- U.S. Environmental Protection Agency, ORD, CESER, WID, Cincinnati, OH 45268, United States
| | - Darren A. Lytle
- U.S. Environmental Protection Agency, ORD, CESER, WID, Cincinnati, OH 45268, United States
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Huang Z, Zhang X, Peñuelas J, Sardans J, Jin Q, Wang C, Yang L, Fang Y, Li Z, Wang W. Industrial and agricultural waste amendments interact with microorganism activities to enhance P availability in rice-paddy soils. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 901:166364. [PMID: 37597547 DOI: 10.1016/j.scitotenv.2023.166364] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2023] [Revised: 08/15/2023] [Accepted: 08/15/2023] [Indexed: 08/21/2023]
Abstract
Adding industrial and agricultural wastes to farmland can increase soil available phosphorus (P) pool and boost crop production, but the process affecting soil P transformation and bioavailability is still poorly understood. We studied the effects of straw (ST), biochar (BC) and Si-modified biochar (Si-BC) amendments on the available-P content and its fraction transformation in rice-paddy soils. Our results showed that these three soil amendments significantly increased the concentrations of both microbial biomass carbon (MBC) and microbial biomass-P (MBP) during the first rice season; by contrast, the effects of ST and BC application were relatively poor on acid-phosphatase (ACP) activity, which was increased by 24 % under ST and 14 % under BC. Soil total P concentrations did not differ significantly, although the concentration and percentage of each P-fraction were altered significantly among treatments. Although all three applications increase soil available-P concentration by promoting the transformation of organic-P (Po) components to inorganic-P (Pi), there are differences in the transformation efficiency of the soil P fraction between these amendments. Redundancy analysis results also showed significant clustering of soil P-fraction transformations after ST and BC treatments. Structural equation model analysis further indicated that all amendments regulated microbial processes by changing soil pH and dissolved organic carbon (DOC), thereby promoting soil P transformation and improving P efficiency. Sodium bicarbonate-extractable Po (NaHCO3-Po) contributed most to soil available-P under the different amendments. Compared to ST and Si-BC, BC application improved more soil microbial status and the transformation of soil unavailable-P into available-P, therefore the application of BC in rice fields is the most beneficial method to promote phosphorus use and production sustainability in rice. These findings helped to understand the effects of using industrial and agricultural waste (e.g. straw, biochar and Si-modified biochar) on soil P-fractions and so provided a reference for sustainable resource use and green production in rice-paddy ecosystems.
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Affiliation(s)
- Zhuang Huang
- Key Laboratory of Humid Subtropical Eco-geographical Process, Ministry of Education, Fujian Normal University, Fuzhou 350117, China; Institute of Geography, Fujian Normal University, Fuzhou 350117, China
| | - Xiaoqing Zhang
- Key Laboratory of Humid Subtropical Eco-geographical Process, Ministry of Education, Fujian Normal University, Fuzhou 350117, China; Institute of Geography, Fujian Normal University, Fuzhou 350117, China
| | - Josep Peñuelas
- CSIC, Global Ecology Unit, CREAF-CSIC-UAB, Bellaterra, 08193 Barcelona, Catalonia, Spain; CREAF, Cerdanyola del Vallès 08193, Catalonia, Spain
| | - Jordi Sardans
- CSIC, Global Ecology Unit, CREAF-CSIC-UAB, Bellaterra, 08193 Barcelona, Catalonia, Spain; CREAF, Cerdanyola del Vallès 08193, Catalonia, Spain
| | - Qiang Jin
- College of Resources and Environmental Science and Engineering, Hubei University of Science and Technology, Xianning 437100, China
| | - Chun Wang
- Key Laboratory of Humid Subtropical Eco-geographical Process, Ministry of Education, Fujian Normal University, Fuzhou 350117, China; Institute of Geography, Fujian Normal University, Fuzhou 350117, China.
| | - Liuming Yang
- Key Laboratory of Humid Subtropical Eco-geographical Process, Ministry of Education, Fujian Normal University, Fuzhou 350117, China; Institute of Geography, Fujian Normal University, Fuzhou 350117, China.
| | - Yunying Fang
- Australian Rivers Institute and School of Environment and Science, Griffith University, Nathan Campus, Queensland 4111, Australia
| | - Zimin Li
- Earth and Life Institute, Soil Science, Université Catholique de Louvain (UCLouvain), Croix du Sud 2, L7.05.10, 1348 Louvain-La-Neuve, Belgium
| | - Weiqi Wang
- Key Laboratory of Humid Subtropical Eco-geographical Process, Ministry of Education, Fujian Normal University, Fuzhou 350117, China; Institute of Geography, Fujian Normal University, Fuzhou 350117, China
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42
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Qi S, Wang G, Li W, Zhou S. Exploring the competitive dynamic enzyme allocation scheme through enzyme cost minimization. ISME COMMUNICATIONS 2023; 3:121. [PMID: 37985704 PMCID: PMC10662282 DOI: 10.1038/s43705-023-00331-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/21/2023] [Revised: 11/07/2023] [Accepted: 11/09/2023] [Indexed: 11/22/2023]
Abstract
Enzyme allocation (or synthesis) is a crucial microbial trait that mediates soil biogeochemical cycles and their responses to climate change. However, few microbial ecological models address this trait, particularly concerning multiple enzyme functional groups that regulate complex biogeochemical processes. Here, we aim to fill this gap by developing a COmpetitive Dynamic Enzyme ALlocation (CODEAL) scheme for six enzyme groups that act as indicators of inorganic nitrogen (N) transformations in the Microbial-ENzyme Decomposition (MEND) model. This allocation scheme employs time-variant allocation coefficients for each enzyme group, fostering mutual competition among the multiple groups. We show that the principle of enzyme cost minimization is achieved by using the substrate's saturation level as the factor for enzyme allocation, resulting in an enzyme-efficient pathway with minimal enzyme cost per unit metabolic flux. It suggests that the relative substrate availability affects the trade-off between enzyme production and metabolic flux. Our research has the potential to give insights into the nuanced dynamics of the N cycle and inspire the evolving landscape of enzyme-mediated biogeochemical processes in microbial ecological modeling, which is gaining increasing attention.
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Affiliation(s)
- Shanshan Qi
- State Key Laboratory of Water Resources Engineering and Management, Wuhan University, Wuhan, 430072, China
- Institute for Water-Carbon Cycles and Carbon Neutrality, School of Water Resources and Hydropower Engineering, Wuhan University, Wuhan, 430072, China
| | - Gangsheng Wang
- State Key Laboratory of Water Resources Engineering and Management, Wuhan University, Wuhan, 430072, China.
- Institute for Water-Carbon Cycles and Carbon Neutrality, School of Water Resources and Hydropower Engineering, Wuhan University, Wuhan, 430072, China.
| | - Wanyu Li
- State Key Laboratory of Water Resources Engineering and Management, Wuhan University, Wuhan, 430072, China
- Institute for Water-Carbon Cycles and Carbon Neutrality, School of Water Resources and Hydropower Engineering, Wuhan University, Wuhan, 430072, China
| | - Shuhao Zhou
- State Key Laboratory of Water Resources Engineering and Management, Wuhan University, Wuhan, 430072, China
- Institute for Water-Carbon Cycles and Carbon Neutrality, School of Water Resources and Hydropower Engineering, Wuhan University, Wuhan, 430072, China
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43
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Tang Y, Li G, Iqbal B, Tariq M, Rehman A, Khan I, Du D. Soil nutrient levels regulate the effect of soil microplastic contamination on microbial element metabolism and carbon use efficiency. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2023; 267:115640. [PMID: 37922780 DOI: 10.1016/j.ecoenv.2023.115640] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/07/2023] [Revised: 10/11/2023] [Accepted: 10/26/2023] [Indexed: 11/07/2023]
Abstract
Microplastics (MPs) are emerging environmental contaminants in soil ecosystems that disrupt the soil carbon (C) pool. Therefore, the response of microbial metabolism to MP-contaminated soil is crucial for soil-C stabilization. We undertook factorial experiments in a greenhouse with three types of soil microplastics with three levels of soil nutrients and undertook soil physiochemical analyses after 60 days. The present study revealed how the presence of degradable polylactic acid (PLA) and non-degradable polyethylene (PE) MPs affects soil microbial nutrient limitation and C use efficiency (CUE) at varying nutrient concentrations. The presence of PLA in soil with low nutrient levels led to a significant increase (29%) in the activities of nitrogen (N)-acquiring enzymes. In contrast, the presence of MPs had no effect on C- and N-acquiring enzymes. The occurrence of PE caused a 41% reduction in microbial C limitation in high-nutrient soils, and microbial nutrient metabolism was limited by the occurrence of MPs in soils amended with nutrients. A strong positive correlation between microbial C and nutrient limitation in the soil indicates that addressing C limitation followed by amendment of soil with MPs could potentially intensify microbial N limitation in soils with varying nutrients. In comparison, the microbial CUE increased by 10% with the application of degradable MPs (PLA) to soils with a low nutrient status. These findings highlight the significant influence of both degradable PLA and non-degradable PE MPs on soil microbial processes and C dynamics. In conclusion, PLA enhances metabolic efficiency in nutrient-rich soils, potentially aiding C utilization, whereas PE reduces microbial C limitation, offering promise for soil C sequestration strategies. Our findings underscore the importance of considering MPs in soil ecosystem studies and in broader sustainability efforts.
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Affiliation(s)
- Yi Tang
- School of Emergency Management, Institute of Environmental Health and Ecological Security, School of Environment and Safety Engineering, Jiangsu Province Engineering Research Center of Green Technology and Contingency Management for Emerging Pollutants, Jiangsu University, Zhenjiang 212013, People's Republic of China
| | - Guanlin Li
- School of Emergency Management, Institute of Environmental Health and Ecological Security, School of Environment and Safety Engineering, Jiangsu Province Engineering Research Center of Green Technology and Contingency Management for Emerging Pollutants, Jiangsu University, Zhenjiang 212013, People's Republic of China; Department of Environmental Science and Ecological Engineering, Korea University, Seoul 02841, Republic of Korea; Jiangsu Collaborative Innovation Center of Technology and Material of Water Treatment, Suzhou University of Science and Technology, Suzhou 215009, People's Republic of China.
| | - Babar Iqbal
- School of Emergency Management, Institute of Environmental Health and Ecological Security, School of Environment and Safety Engineering, Jiangsu Province Engineering Research Center of Green Technology and Contingency Management for Emerging Pollutants, Jiangsu University, Zhenjiang 212013, People's Republic of China; Jiangsu Collaborative Innovation Center of Technology and Material of Water Treatment, Suzhou University of Science and Technology, Suzhou 215009, People's Republic of China
| | - Muhammad Tariq
- School of Emergency Management, Institute of Environmental Health and Ecological Security, School of Environment and Safety Engineering, Jiangsu Province Engineering Research Center of Green Technology and Contingency Management for Emerging Pollutants, Jiangsu University, Zhenjiang 212013, People's Republic of China
| | - Abdul Rehman
- Department of Agronomy, Faculty of Agriculture and Environment, The Islamia University of Bahawalpur, 63100 Bahawalpur, Pakistan
| | - Ismail Khan
- School of Emergency Management, Institute of Environmental Health and Ecological Security, School of Environment and Safety Engineering, Jiangsu Province Engineering Research Center of Green Technology and Contingency Management for Emerging Pollutants, Jiangsu University, Zhenjiang 212013, People's Republic of China; Jiangsu Collaborative Innovation Center of Technology and Material of Water Treatment, Suzhou University of Science and Technology, Suzhou 215009, People's Republic of China.
| | - Daolin Du
- School of Emergency Management, Institute of Environmental Health and Ecological Security, School of Environment and Safety Engineering, Jiangsu Province Engineering Research Center of Green Technology and Contingency Management for Emerging Pollutants, Jiangsu University, Zhenjiang 212013, People's Republic of China
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44
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Piton G, Allison SD, Bahram M, Hildebrand F, Martiny JBH, Treseder KK, Martiny AC. Life history strategies of soil bacterial communities across global terrestrial biomes. Nat Microbiol 2023; 8:2093-2102. [PMID: 37798477 DOI: 10.1038/s41564-023-01465-0] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2022] [Accepted: 08/08/2023] [Indexed: 10/07/2023]
Abstract
The life history strategies of soil microbes determine their metabolic potential and their response to environmental changes. Yet these strategies remain poorly understood. Here we use shotgun metagenomes from terrestrial biomes to characterize overarching covariations of the genomic traits that capture dominant life history strategies in bacterial communities. The emerging patterns show a triangle of life history strategies shaped by two trait dimensions, supporting previous theoretical and isolate-based studies. The first dimension ranges from streamlined genomes with simple metabolisms to larger genomes and expanded metabolic capacities. As metabolic capacities expand, bacterial communities increasingly differentiate along a second dimension that reflects a trade-off between increasing capacities for environmental responsiveness or for nutrient recycling. Random forest analyses show that soil pH, C:N ratio and precipitation patterns together drive the dominant life history strategy of soil bacterial communities and their biogeographic distribution. Our findings provide a trait-based framework to compare life history strategies of soil bacteria.
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Affiliation(s)
- Gabin Piton
- Department of Earth System Science, University of California, Irvine, Irvine, CA, USA.
- Eco&Sols, University Montpellier, CIRAD, INRAE, Institut Agro, IRD, Montpellier, France.
| | - Steven D Allison
- Department of Earth System Science, University of California, Irvine, Irvine, CA, USA
- Department of Ecology and Evolutionary Biology, University of California, Irvine, Irvine, CA, USA
| | - Mohammad Bahram
- Department of Ecology, Swedish University of Agricultural Sciences, Uppsala, Sweden
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Falk Hildebrand
- Gut Microbes and Health, Quadram Institute Bioscience, Norwich Research Park, Norwich, Norfolk, UK
- Digital Biology, Earlham Institute, Norwich Research Park, Norwich, Norfolk, UK
| | - Jennifer B H Martiny
- Department of Ecology and Evolutionary Biology, University of California, Irvine, Irvine, CA, USA
| | - Kathleen K Treseder
- Department of Ecology and Evolutionary Biology, University of California, Irvine, Irvine, CA, USA
| | - Adam C Martiny
- Department of Earth System Science, University of California, Irvine, Irvine, CA, USA
- Department of Ecology and Evolutionary Biology, University of California, Irvine, Irvine, CA, USA
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45
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Tureţcaia AB, Garayburu-Caruso VA, Kaufman MH, Danczak RE, Stegen JC, Chu RK, Toyoda JG, Cardenas MB, Graham EB. Rethinking Aerobic Respiration in the Hyporheic Zone under Variation in Carbon and Nitrogen Stoichiometry. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2023; 57:15499-15510. [PMID: 37795960 PMCID: PMC10586321 DOI: 10.1021/acs.est.3c04765] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2023] [Revised: 09/07/2023] [Accepted: 09/08/2023] [Indexed: 10/06/2023]
Abstract
Hyporheic zones (HZs)─zones of groundwater-surface water mixing─are hotspots for dissolved organic matter (DOM) and nutrient cycling that can disproportionately impact aquatic ecosystem functions. However, the mechanisms affecting DOM metabolism through space and time in HZs remain poorly understood. To resolve this gap, we investigate a recently proposed theory describing trade-offs between carbon (C) and nitrogen (N) limitations as a key regulator of HZ metabolism. We propose that throughout the extent of the HZ, a single process like aerobic respiration (AR) can be limited by both DOM thermodynamics and N content due to highly variable C/N ratios over short distances (centimeter scale). To investigate this theory, we used a large flume, continuous optode measurements of dissolved oxygen (DO), and spatially and temporally resolved molecular analysis of DOM. Carbon and N limitations were inferred from changes in the elemental stoichiometric ratio. We show sequential, depth-stratified relationships of DO with DOM thermodynamics and organic N that change across centimeter scales. In the shallow HZ with low C/N, DO was associated with the thermodynamics of DOM, while deeper in the HZ with higher C/N, DO was associated with inferred biochemical reactions involving organic N. Collectively, our results suggest that there are multiple competing processes that limit AR in the HZ. Resolving this spatiotemporal variation could improve predictions from mechanistic models, either via more highly resolved grid cells or by representing AR colimitation by DOM thermodynamics and organic N.
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Affiliation(s)
- Anna B. Tureţcaia
- Department
of Earth and Planetary Sciences, The University
of Texas at Austin, Austin, Texas 78712, United States
| | | | - Matthew H. Kaufman
- Pacific
Northwest National Laboratory, Richland, Washington 99352, United States
- Department
of Earth, Environment, and Physics, Worcester
State University, Worcester, Massachusetts 01602, United States
| | - Robert E. Danczak
- Pacific
Northwest National Laboratory, Richland, Washington 99352, United States
| | - James C. Stegen
- Pacific
Northwest National Laboratory, Richland, Washington 99352, United States
- School
of the Environment, Washington State University, Pullman, Washington 99164, United States
| | - Rosalie K. Chu
- Environmental
Molecular Sciences Laboratory, Richland, Washington 99352, United States
| | - Jason G. Toyoda
- Environmental
Molecular Sciences Laboratory, Richland, Washington 99352, United States
| | - M. Bayani Cardenas
- Department
of Earth and Planetary Sciences, The University
of Texas at Austin, Austin, Texas 78712, United States
| | - Emily B. Graham
- Pacific
Northwest National Laboratory, Richland, Washington 99352, United States
- School
of Biological Sciences, Washington State
University, Pullman, Washington 99164, United States
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46
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Fang C, He Y, Yang Y, Fu B, Pan S, Jiao F, Wang J, Yang H. Laboratory tidal microcosm deciphers responses of sediment archaeal and bacterial communities to microplastic exposure. JOURNAL OF HAZARDOUS MATERIALS 2023; 458:131813. [PMID: 37339576 DOI: 10.1016/j.jhazmat.2023.131813] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2023] [Revised: 05/24/2023] [Accepted: 06/07/2023] [Indexed: 06/22/2023]
Abstract
Microplastics (MPs) are 1-5 mm plastic particles that are serious global contaminants distributed throughout marine ecosystems. However, their impact on intertidal sediment microbial communities is poorly understood. In this study, we conducted a 30-day laboratory tidal microcosm experiment to investigate the effects of MPs on microbial communities. Specifically, we used the biodegradable polymers polylactic acid (PLA) and polybutylene succinate (PBS), as well as the conventional polymers polyethylene terephthalate (PET), polycarbonate (PC), and polyethylene (PE). Treatments with different concentrations (1-5%, w/w) of PLA- and PE-MPs were also included. We analyzed taxonomic variations in archaeal and bacterial communities using 16S rRNA high-throughput sequencing. PLA-MPs at concentrations of 1% (w/w) rapidly altered microbiome composition. Total organic carbon and nitrite nitrogen were the key physicochemical factors and urease was the major enzyme shaping MP-exposed sediment microbial communities. Stochastic processes predominated in microbial assembly and the addition of biodegradable MPs enhanced the contribution of ecological selections. The major keystone taxa of archaea and bacteria were Nitrososphaeria and Alphaproteobacteria, respectively. MPs exposure had less effect on archaeal functions while nitrogen cycling decreased in PLA-MPs treatments. These findings expanded the current understanding of the mechanism and pattern that MPs affect sediment microbial communities.
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Affiliation(s)
- Chang Fang
- College of Marine Sciences, South China Agricultural University, Guangzhou 510642, China; Zhongshan Innovation Center of South China Agricultural University, Zhongshan 528400, China
| | - Yinglin He
- College of Marine Sciences, South China Agricultural University, Guangzhou 510642, China; Zhongshan Innovation Center of South China Agricultural University, Zhongshan 528400, China
| | - Yuting Yang
- College of Marine Sciences, South China Agricultural University, Guangzhou 510642, China; Zhongshan Innovation Center of South China Agricultural University, Zhongshan 528400, China
| | - Bing Fu
- College of Marine Sciences, South China Agricultural University, Guangzhou 510642, China; Zhongshan Innovation Center of South China Agricultural University, Zhongshan 528400, China
| | - Sentao Pan
- College of Marine Sciences, South China Agricultural University, Guangzhou 510642, China; Zhongshan Innovation Center of South China Agricultural University, Zhongshan 528400, China
| | - Fang Jiao
- College of Marine Sciences, South China Agricultural University, Guangzhou 510642, China; Zhongshan Innovation Center of South China Agricultural University, Zhongshan 528400, China
| | - Jun Wang
- College of Marine Sciences, South China Agricultural University, Guangzhou 510642, China
| | - Huirong Yang
- College of Marine Sciences, South China Agricultural University, Guangzhou 510642, China; Zhongshan Innovation Center of South China Agricultural University, Zhongshan 528400, China.
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47
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Pan X, Ullah A, Feng YX, Tian P, Yu XZ. Proline-mediated activation of glyoxalase II improve methylglyoxal detoxification in Oryza sativa L. under chromium injury: Clarification via vector analysis of enzymatic activities and gene expression. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2023; 201:107867. [PMID: 37393860 DOI: 10.1016/j.plaphy.2023.107867] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/04/2023] [Revised: 06/19/2023] [Accepted: 06/26/2023] [Indexed: 07/04/2023]
Abstract
Environmental factors affect plants in several ways including the excessive accumulation of methylglyoxal (MG), resulting in dysfunctions of many biological processes. Exogenous proline (Pro) application is one of the successful strategies to increase plant tolerance against various environmental stresses, including chromium (Cr). This study highlights the alleviation role of exogenous Pro on MG detoxification in rice plants induced by Cr(Vl) through modifying the expression of glyoxalase I (Gly I)- and glyoxalase II (Gly II)-related genes. The MG content in rice roots was significantly reduced by Pro application under Cr(VI) stress, however, there was little effect on the MG content in shoots. In this connection, the vector analysis was used to compare the involvement of Gly l and Gly II on MG detoxification in 'Cr(VI)' and 'Pro+Cr(VI)' treatments. Results exhibited that vector strength in rice roots increased with an increase in Cr concentrations, while there was a negligible difference in the shoots. The comparative analysis demonstrated that the vector strengths in roots under 'Pro+Cr(VI)' treatments were higher than 'Cr(VI)' treatments, suggesting that Pro improved Gly II activity more efficiently to reduce MG content in roots. Calculation of the gene expression variation factors (GEFs) indicated a positive effect of Pro application on the expression of Gly I and Gly ll-related genes, wherein a stronger impact was in roots than the shoots. Together, the vector analysis and gene expression data reveal that exogenous Pro chiefly improved Gly ll activity in rice roots which subsequently enhanced MG detoxification under Cr(VI) stress.
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Affiliation(s)
- Xingren Pan
- College of Environmental Science & Engineering, Guilin University of Technology, Guilin, 541004, People's Republic of China
| | - Abid Ullah
- College of Environmental Science & Engineering, Guilin University of Technology, Guilin, 541004, People's Republic of China
| | - Yu-Xi Feng
- College of Environmental Science & Engineering, Guilin University of Technology, Guilin, 541004, People's Republic of China
| | - Peng Tian
- College of Environmental Science & Engineering, Guilin University of Technology, Guilin, 541004, People's Republic of China
| | - Xiao-Zhang Yu
- College of Environmental Science & Engineering, Guilin University of Technology, Guilin, 541004, People's Republic of China.
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48
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Cui Y, Peng S, Delgado-Baquerizo M, Rillig MC, Terrer C, Zhu B, Jing X, Chen J, Li J, Feng J, He Y, Fang L, Moorhead DL, Sinsabaugh RL, Peñuelas J. Microbial communities in terrestrial surface soils are not widely limited by carbon. GLOBAL CHANGE BIOLOGY 2023; 29:4412-4429. [PMID: 37277945 DOI: 10.1111/gcb.16765] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2022] [Revised: 04/03/2023] [Accepted: 04/04/2023] [Indexed: 06/07/2023]
Abstract
Microbial communities in soils are generally considered to be limited by carbon (C), which could be a crucial control for basic soil functions and responses of microbial heterotrophic metabolism to climate change. However, global soil microbial C limitation (MCL) has rarely been estimated and is poorly understood. Here, we predicted MCL, defined as limited availability of substrate C relative to nitrogen and/or phosphorus to meet microbial metabolic requirements, based on the thresholds of extracellular enzyme activity across 847 sites (2476 observations) representing global natural ecosystems. Results showed that only about 22% of global sites in terrestrial surface soils show relative C limitation in microbial community. This finding challenges the conventional hypothesis of ubiquitous C limitation for soil microbial metabolism. The limited geographic extent of C limitation in our study was mainly attributed to plant litter, rather than soil organic matter that has been processed by microbes, serving as the dominant C source for microbial acquisition. We also identified a significant latitudinal pattern of predicted MCL with larger C limitation at mid- to high latitudes, whereas this limitation was generally absent in the tropics. Moreover, MCL significantly constrained the rates of soil heterotrophic respiration, suggesting a potentially larger relative increase in respiration at mid- to high latitudes than low latitudes, if climate change increases primary productivity that alleviates MCL at higher latitudes. Our study provides the first global estimates of MCL, advancing our understanding of terrestrial C cycling and microbial metabolic feedback under global climate change.
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Affiliation(s)
- Yongxing Cui
- Sino-French Institute for Earth System Science, College of Urban and Environmental Sciences, Peking University, Beijing, China
| | - Shushi Peng
- Sino-French Institute for Earth System Science, College of Urban and Environmental Sciences, Peking University, Beijing, China
| | - Manuel Delgado-Baquerizo
- Laboratorio de Biodiversidad y Funcionamiento Ecosistémico, Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), CSIC, Sevilla, Spain
- Unidad Asociada CSIC-UPO (BioFun). Universidad Pablo de Olavide, Sevilla, Spain
| | | | - César Terrer
- Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Boston, Massachusetts, USA
| | - Biao Zhu
- Institute of Ecology, College of Urban and Environmental Sciences, and Key Laboratory for Earth Surface Processes of the Ministry of Education, Peking University, Beijing, China
| | - Xin Jing
- State Key Laboratory of Grassland Agro-Ecosystems, and College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou, Gansu, China
| | - Ji Chen
- Department of Agroecology, Aarhus University, Tjele, Denmark
| | - Jinquan Li
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, Institute of Biodiversity Science and Institute of Eco-Chongming, School of Life Sciences, Fudan University, Shanghai, China
| | - Jiao Feng
- College of Resources and Environment, Huazhong Agricultural University, Wuhan, China
| | - Yue He
- Sino-French Institute for Earth System Science, College of Urban and Environmental Sciences, Peking University, Beijing, China
| | - Linchuan Fang
- School of Resource and Environmental Engineering, Wuhan University of Technology, Wuhan, China
| | - Daryl L Moorhead
- Department of Environmental Sciences, University of Toledo, Toledo, Ohio, USA
| | - Robert L Sinsabaugh
- Department of Biology, University of New Mexico, Albuquerque, New Mexico, USA
| | - Josep Peñuelas
- CSIC, Global Ecology Unit CREAF-CSIC-UAB, Bellaterra, Catalonia, Spain
- CREAF, Cerdanyola del Vallès, Catalonia, Spain
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49
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Yang R, Yang Z, Yang S, Chen LL, Xin J, Xu L, Zhang X, Zhai B, Wang Z, Zheng W, Li Z. Nitrogen inhibitors improve soil ecosystem multifunctionality by enhancing soil quality and alleviating microbial nitrogen limitation. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 880:163238. [PMID: 37011677 DOI: 10.1016/j.scitotenv.2023.163238] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2023] [Revised: 03/28/2023] [Accepted: 03/29/2023] [Indexed: 05/27/2023]
Abstract
Soil quality (SQI) is a comprehensive indicator reflecting the agricultural productivity of soil, and soil ecosystem multifunctionality (performing multiple functions simultaneously; EMF) can reflect complex biogeochemical processes. However, the effects of enhanced efficiency nitrogen fertilizers (EENFs; urease inhibitors (NBPT), nitrification inhibitors (DCD), and coated controlled-release urea (RCN)) application on the SQI and soil EMF and their relationships are still unclear. Therefore, we conducted a field experiment to study the effects of different EENFs on the SQI, enzyme stoichiometry and soil EMF in semiarid areas of Northwest China (Gansu, Ningxia, Shaanxi, Shanxi). Across the four study sites, DCD and NBPT increased SQI by 7.61-16.80 % and 2.61 %-23.20 % compared to mineral fertilizer, respectively. N fertilizer application (N200 and EENFs) alleviated microbial N limitation, and EENFs alleviated microbial N and C limitations to a greater extent in Gansu and Shanxi. Moreover, nitrogen inhibitors (Nis; DCD and NBPT) improved the soil EMF to a greater extent than N200 and RCN, DCD increased by 205.82-340.00 % and 145.00-215.47 % in Gansu and Shanxi, respectively; NBPT increased by 332.75-778.59 % and 364.44-929.62 % in Ningxia and Shanxi, respectively. A random forest model showed that the microbial biomass carbon (MBC), microbial biomass nitrogen (MBN) and soil water content (SWC) of the SQI factors were the main driving forces of soil EMF. Moreover, SQI improvement could alleviate microbial C and N limitations and promote the improvement of soil EMF. It is worth noting that soil EMF was mainly affected by microbial N limitation rather than C limitation. Overall, NIs application is an effective way to improve the SQI and soil EMF in the semiarid region of Northwest China.
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Affiliation(s)
- Ruizhe Yang
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, PR China; Key Laboratory of Plant Nutrition and the Agri-environment in Northwest China, Ministry of Agriculture, Yangling, Shaanxi 712100, PR China
| | - Ze Yang
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, PR China; Key Laboratory of Plant Nutrition and the Agri-environment in Northwest China, Ministry of Agriculture, Yangling, Shaanxi 712100, PR China
| | - Shilong Yang
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, PR China
| | - Lan-Lan Chen
- College of Resources and Environmental Sciences, Gansu Agricultural University/Gansu Provincial Key Laboratory of Arid-land Crop Science, Lanzhou 730070, PR China
| | - Jia Xin
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Changshu National Agro-Ecosystem Observation and Research Station, Chinese Academy of Sciences, Nanjing 210008, PR China
| | - Lingying Xu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Changshu National Agro-Ecosystem Observation and Research Station, Chinese Academy of Sciences, Nanjing 210008, PR China
| | - Xuechen Zhang
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, PR China; Key Laboratory of Plant Nutrition and the Agri-environment in Northwest China, Ministry of Agriculture, Yangling, Shaanxi 712100, PR China
| | - Bingnian Zhai
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, PR China; Key Laboratory of Plant Nutrition and the Agri-environment in Northwest China, Ministry of Agriculture, Yangling, Shaanxi 712100, PR China
| | - Zhaohui Wang
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, PR China; Key Laboratory of Plant Nutrition and the Agri-environment in Northwest China, Ministry of Agriculture, Yangling, Shaanxi 712100, PR China
| | - Wei Zheng
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, PR China; Key Laboratory of Plant Nutrition and the Agri-environment in Northwest China, Ministry of Agriculture, Yangling, Shaanxi 712100, PR China.
| | - Ziyan Li
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, PR China; Key Laboratory of Plant Nutrition and the Agri-environment in Northwest China, Ministry of Agriculture, Yangling, Shaanxi 712100, PR China.
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50
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Liu WS, Wei YX, Deng PP, Oladele OP, N'Dri Bohoussou Y, Dang YP, Zhao X, Zhang HL. Conservation tillage increases surface soil organic carbon stock by altering fungal communities and enzyme activity. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:80901-80915. [PMID: 37311861 DOI: 10.1007/s11356-023-28062-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2023] [Accepted: 05/30/2023] [Indexed: 06/15/2023]
Abstract
Fungal communities play a key role in the decomposition of crop residues and affect soil organic carbon (SOC) dynamics. Conservation tillage enhances SOC sequestration and mitigate global climate change. However, the impact of long-term tillage practices on fungal community diversity and its relation to SOC stock remains unclear. The objectives of this study were to evaluate the relationship between extracellular enzyme activities and fungal community diversity and SOC stock under different tillage practices. A field experiment was conducted with four tillage practices: (i) no-tillage with straw removal (NT0), (ii) no-tillage with straw retention (NTSR, conservation tillage), (iii) plough tillage with straw retention (PTSR), and (iv) rotary tillage with straw retention (RTSR). The results showed that the SOC stock in NTSR was higher than other treatments in the 0-10 cm soil layer. Compared to NT0, NTSR significantly increased soil β-glucosidase, xylosidase, cellobiohydrolase, and chitinase activities at 0-10 cm soil depth (P < 0.05). However, different tillage methods with straw returning had no significant effects on enzyme activity at 0-10 cm soil depth. The observed species and Chao1 index of the fungal communities under NTSR were 22.8% and 32.1% lower than under RTSR in the 0-10 cm soil layer, respectively. The composition, structure, and co-occurrence network of fungal communities differed across tillage practices. A partial least squares path model (PLS-PM) analysis indicated that C-related enzymes were the most influential factors associated with SOC stock. Soil physicochemical properties and fungal communities affected extracellular enzyme activities. Overall, conservation tillage can promote surface SOC stock, which was associated with increased enzyme activity.
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Affiliation(s)
- Wen-Sheng Liu
- College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100193, People's Republic of China
- Key Laboratory of Farming System, Ministry of Agriculture and Rural Affairs of China, Beijing, 100193, People's Republic of China
| | - Yu-Xin Wei
- College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100193, People's Republic of China
- Key Laboratory of Farming System, Ministry of Agriculture and Rural Affairs of China, Beijing, 100193, People's Republic of China
| | - Ping-Ping Deng
- College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100193, People's Republic of China
- Key Laboratory of Farming System, Ministry of Agriculture and Rural Affairs of China, Beijing, 100193, People's Republic of China
| | - Olatunde Pelumi Oladele
- College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100193, People's Republic of China
- Key Laboratory of Farming System, Ministry of Agriculture and Rural Affairs of China, Beijing, 100193, People's Republic of China
| | - Yves N'Dri Bohoussou
- College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100193, People's Republic of China
- Key Laboratory of Farming System, Ministry of Agriculture and Rural Affairs of China, Beijing, 100193, People's Republic of China
| | - Yash Pal Dang
- School of Agriculture and Food Sciences, The University of Queensland, St Lucia, 4072, Australia
| | - Xin Zhao
- College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100193, People's Republic of China
- Key Laboratory of Farming System, Ministry of Agriculture and Rural Affairs of China, Beijing, 100193, People's Republic of China
| | - Hai-Lin Zhang
- College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100193, People's Republic of China.
- Key Laboratory of Farming System, Ministry of Agriculture and Rural Affairs of China, Beijing, 100193, People's Republic of China.
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