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Moffett AT, Halpern SD, Weissman GE. The effect of a post-bronchodilator FEV 1/FVC < 0.7 on COPD diagnosis and treatment: a regression discontinuity design. Respir Res 2025; 26:122. [PMID: 40170167 PMCID: PMC11963470 DOI: 10.1186/s12931-025-03198-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2024] [Accepted: 03/20/2025] [Indexed: 04/03/2025] Open
Abstract
BACKGROUND Global Initiative for Chronic Obstructive Lung Disease (GOLD) guidelines recommend the diagnosis of chronic obstructive pulmonary disease (COPD) only in patients with a post-bronchodilator forced expiratory volume in 1 s to forced vital capacity ratio (FEV1/FVC) less than 0.7. However the impact of this recommendation on clinical practice is unknown. OBJECTIVE To estimate the effect of a documented post-bronchodilator FEV1/FVC < 0.7 on the diagnosis and treatment of COPD. DESIGN We used a regression discontinuity design to measure the effect of a post-bronchodilator FEV1/FVC < 0.7 on COPD diagnosis and treatment. PARTICIPANTS Patients included in a national electronic health record database who were 18 years of age and older and had a clinical encounter between 2007 and 2022 in which a post-bronchodilator FEV1/FVC value was documented. MAIN MEASURES An encounter was associated with a COPD diagnosis if an international classification of disease code for COPD was assigned, and was associated with COPD treatment if a prescription for a medication commonly used to treat COPD was filled within 90 days. RESULTS Among 27,817 clinical encounters, involving 18,991 patients, a post-bronchodilator FEV1/FVC < 0.7 was present in 14,876 (53.4%). The presence of a documented post-bronchodilator FEV1/FVC < 0.7 increased the probability of a COPD diagnosis by 6.0% (95% confidence interval [CI] 1.1-10.9%) from 38.0% just above the 0.7 cutoff to 44.0% just below this cutoff. The presence of a documented post-bronchodilator FEV1/FVC < 0.7 had no effect on the probability of COPD treatment (-2.1%, 95% CI -7.2 to 3.0%). CONCLUSIONS The presence of a documented post-bronchodilator FEV1/FVC < 0.7 had only a small effect on the diagnosis of COPD and no effect on corresponding treatment decisions.
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Affiliation(s)
- Alexander T Moffett
- Division of Pulmonary, Allergy, and Critical Care Medicine, Department of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
- Palliative and Advanced Illness Research (PAIR) Center, University of Pennsylvania, Philadelphia, PA, USA.
- Leonard Davis Institute of Health Economics, University of Pennsylvania, Philadelphia, PA, USA.
- Division of Pulmonary, Allergy, and Critical Care Medicine, Hospital of the University of Pennsylvania, 3400 Spruce Street, Philadelphia, PA, 19104, USA.
| | - Scott D Halpern
- Division of Pulmonary, Allergy, and Critical Care Medicine, Department of Medicine, University of Pennsylvania, Philadelphia, PA, USA
- Palliative and Advanced Illness Research (PAIR) Center, University of Pennsylvania, Philadelphia, PA, USA
- Leonard Davis Institute of Health Economics, University of Pennsylvania, Philadelphia, PA, USA
- Department of Biostatistics, Epidemiology and Informatics, University of Pennsylvania, Philadelphia, PA, USA
- Department of Medical Ethics and Health Policy, University of Pennsylvania, Philadelphia, PA, USA
| | - Gary E Weissman
- Division of Pulmonary, Allergy, and Critical Care Medicine, Department of Medicine, University of Pennsylvania, Philadelphia, PA, USA
- Palliative and Advanced Illness Research (PAIR) Center, University of Pennsylvania, Philadelphia, PA, USA
- Leonard Davis Institute of Health Economics, University of Pennsylvania, Philadelphia, PA, USA
- Department of Biostatistics, Epidemiology and Informatics, University of Pennsylvania, Philadelphia, PA, USA
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Samak ZA. Multi-type stroke lesion segmentation: comparison of single-stage and hierarchical approach. Med Biol Eng Comput 2025; 63:975-986. [PMID: 39549224 DOI: 10.1007/s11517-024-03243-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2024] [Accepted: 11/02/2024] [Indexed: 11/18/2024]
Abstract
Stroke, a major cause of death and disability worldwide, can be haemorrhagic or ischaemic depending on the type of bleeding in the brain. Rapid and accurate identification of stroke type and lesion segmentation is critical for timely and effective treatment. However, existing research primarily focuses on segmenting a single stroke type, potentially limiting their clinical applicability. This study addresses this gap by exploring multi-type stroke lesion segmentation using deep learning methods. Specifically, we investigate two distinct approaches: a single-stage approach that directly segments all tissue types in one model and a hierarchical approach that first classifies stroke types and then utilises specialised segmentation models for each subtype. Recognising the importance of accurate stroke classification for the hierarchical approach, we evaluate ResNet, ResNeXt and ViT networks, incorporating focal loss and oversampling techniques to mitigate the impact of class imbalance. We further explore the performance of U-Net, U-Net++ and DeepLabV3 models for segmentation within each approach. We use a comprehensive dataset of 6650 images provided by the Ministry of Health of the Republic of Türkiye. This dataset includes 1130 ischaemic strokes, 1093 haemorrhagic strokes and 4427 non-stroke cases. In our comparative experiments, we achieve an AUC score of 0.996 when classifying stroke and non-stroke slices. For lesion segmentation task, while the performance of different architectures is comparable, the hierarchical training approach outperforms the single-stage approach in terms of intersection over union (IoU). The performance of the U-Net model increased significantly from an IoU of 0.788 to 0.875 when the hierarchical approach is used. This comparative analysis aims to identify the most effective approach and deep learning model for multi-type stroke lesion segmentation in brain CT scans, potentially leading to improved clinical decision-making, treatment efficiency and outcomes.
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Affiliation(s)
- Zeynel A Samak
- Department of Computer Engineering, Adiyaman University, Adiyaman, 02040, Türkiye.
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3
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Wu Q, Guo H, Li R, Han J. Deep learning and machine learning in CT-based COPD diagnosis: Systematic review and meta-analysis. Int J Med Inform 2025; 196:105812. [PMID: 39891985 DOI: 10.1016/j.ijmedinf.2025.105812] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2024] [Revised: 01/19/2025] [Accepted: 01/23/2025] [Indexed: 02/03/2025]
Abstract
BACKGROUND With advancements in medical technology and science, chronic obstructive pulmonary disease (COPD), one of the world's three major chronic diseases, has seen numerous remarkable outcomes when combined with artificial intelligence, particularly in disease diagnosis. However, the diagnostic performance of these AI models still lacks comprehensive evidence. Therefore, this study quantitatively analyzed the diagnostic performance of AI models in CT images of COPD patients, aiming to promote the development of related research in the future. METHODS PubMed, Cochrane Library, Web of Science, and Embase were retrieved up to September 1, 2024. The QUADAS-2 evaluation tool was used to assess the quality of the included studies. Meta-analysis of the included researches was performed using Stata18, RevMan 5.4, and Meta-Disc 1.4 software to merge sensitivity, specificity and plot a summary receiver operating characteristic curve (SROC). Heterogeneity was assessed using the Q statistic, and sources of inter-study heterogeneity were explored through meta-regression analysis. RESULTS Twenty-two of 3280 identified studies were eligible. Meta-analysis was performed on 15 of these studies, encompassing a total of 22,817 patients for which statistical metrics were reported or could be calculated. Seven studies were based on deep learning (DL) model, three on machine learning (ML) model, and five on DL model with multiple-instance learning (MIL) mechanisms. One study evaluated both DL and ML models. The meta-analysis results showed that the pooled sensitivity of all DL and ML models was 86 % (95 %CI 78-91 %), specificity was 87 % (95 %CI 83-91 %), and area under the curve was 93 % (95 %CI 90-95 %). Subgroup analyses revealed no significant difference in diagnostic sensitivity and specificity between DL and ML models (sensitivity 82 % (95 %CI 76-87 %), 93 % (95 %CI 85-97 %); specificity 87 % (95 %CI 79-91 %), 84 % (95 %CI 79-88 %), and the DL model with MIL (sensitivity 87 % (95 %CI 61-96 %); specificity 89 % (95 %CI 78-95 %) improved the performance of DL model, but this improvement was not statistically significant (p > 0.05). CONCLUSION Both DL and ML models for diagnosing COPD using CT images exhibited high accuracy. There was no significant difference in diagnostic efficacy between the two types of AI models, and the addition of the MIL mechanism may enhance the performance of the DL model.
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Affiliation(s)
- Qian Wu
- Department of Medical Imaging Center, The Fourth Clinical Medical College of Xinjiang Medical University, Urumqi, Xinjian 830000, China
| | - Hui Guo
- Department of Medical Imaging Center, The Fourth Clinical Medical College of Xinjiang Medical University, Urumqi, Xinjian 830000, China.
| | - Ruihan Li
- Department of Medical Imaging Center, The Fourth Clinical Medical College of Xinjiang Medical University, Urumqi, Xinjian 830000, China
| | - Jinhuan Han
- Department of Medical Imaging Center, The Fourth Clinical Medical College of Xinjiang Medical University, Urumqi, Xinjian 830000, China
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4
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Dorosti T, Schultheiss M, Hofmann F, Thalhammer J, Kirchner L, Urban T, Pfeiffer F, Schaff F, Lasser T, Pfeiffer D. Optimizing convolutional neural networks for Chronic Obstructive Pulmonary Disease detection in clinical computed tomography imaging. Comput Biol Med 2025; 185:109533. [PMID: 39705795 DOI: 10.1016/j.compbiomed.2024.109533] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2024] [Revised: 12/03/2024] [Accepted: 12/03/2024] [Indexed: 12/23/2024]
Abstract
We aim to optimize the binary detection of Chronic Obstructive Pulmonary Disease (COPD) based on emphysema presence in the lung with convolutional neural networks (CNN) by exploring manually adjusted versus automated window-setting optimization (WSO) on computed tomography (CT) images. 7194 contrast-enhanced CT images (3597 with COPD; 3597 healthy controls) from 78 subjects were selected retrospectively (01.2018-12.2021) and preprocessed. For each image, intensity values were manually clipped to the emphysema window setting and a baseline 'full-range' window setting. Class-balanced train, validation, and test sets contained 3392, 1114, and 2688 images. The network backbone was optimized by comparing various CNN architectures. Furthermore, automated WSO was implemented by adding a customized layer to the model. The image-level area under the Receiver Operating Characteristics curve (AUC) [lower, upper limit 95% confidence] was utilized to compare model variations. Repeated inference (n = 7) on the test set showed that the DenseNet was the most efficient backbone and achieved a mean AUC of 0.80 [0.76, 0.85] without WSO. Comparably, with input images manually adjusted to the emphysema window, the DenseNet model predicted COPD with a mean AUC of 0.86 [0.82, 0.89]. By adding a customized WSO layer to the DenseNet, an optimal window in the proximity of the emphysema window setting was learned automatically, and a mean AUC of 0.82 [0.78, 0.86] was achieved. Detection of COPD with DenseNet models was improved by WSO of CT data to the emphysema window setting range.
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Affiliation(s)
- Tina Dorosti
- Chair of Biomedical Physics, Department of Physics, School of Natural Sciences, Technical University of Munich, Garching, 85748, Bavaria, Germany; Munich Institute of Biomedical Engineering, Technical University of Munich, Garching, 85748, Bavaria, Germany; Department of Diagnostic and Interventional Radiology, School of Medicine and Health, Klinikum rechts der Isar, Technical University of Munich, Munich, 81675, Bavaria, Germany.
| | - Manuel Schultheiss
- Chair of Biomedical Physics, Department of Physics, School of Natural Sciences, Technical University of Munich, Garching, 85748, Bavaria, Germany; Munich Institute of Biomedical Engineering, Technical University of Munich, Garching, 85748, Bavaria, Germany; Department of Diagnostic and Interventional Radiology, School of Medicine and Health, Klinikum rechts der Isar, Technical University of Munich, Munich, 81675, Bavaria, Germany
| | - Felix Hofmann
- Department of Diagnostic and Interventional Radiology, School of Medicine and Health, Klinikum rechts der Isar, Technical University of Munich, Munich, 81675, Bavaria, Germany
| | - Johannes Thalhammer
- Chair of Biomedical Physics, Department of Physics, School of Natural Sciences, Technical University of Munich, Garching, 85748, Bavaria, Germany; Munich Institute of Biomedical Engineering, Technical University of Munich, Garching, 85748, Bavaria, Germany; Department of Diagnostic and Interventional Radiology, School of Medicine and Health, Klinikum rechts der Isar, Technical University of Munich, Munich, 81675, Bavaria, Germany; Institute for Advanced Study, Technical University of Munich, Garching, 85748, Bavaria, Germany
| | - Luisa Kirchner
- Department of Diagnostic and Interventional Radiology, School of Medicine and Health, Klinikum rechts der Isar, Technical University of Munich, Munich, 81675, Bavaria, Germany
| | - Theresa Urban
- Chair of Biomedical Physics, Department of Physics, School of Natural Sciences, Technical University of Munich, Garching, 85748, Bavaria, Germany; Munich Institute of Biomedical Engineering, Technical University of Munich, Garching, 85748, Bavaria, Germany; Department of Diagnostic and Interventional Radiology, School of Medicine and Health, Klinikum rechts der Isar, Technical University of Munich, Munich, 81675, Bavaria, Germany
| | - Franz Pfeiffer
- Chair of Biomedical Physics, Department of Physics, School of Natural Sciences, Technical University of Munich, Garching, 85748, Bavaria, Germany; Munich Institute of Biomedical Engineering, Technical University of Munich, Garching, 85748, Bavaria, Germany; Department of Diagnostic and Interventional Radiology, School of Medicine and Health, Klinikum rechts der Isar, Technical University of Munich, Munich, 81675, Bavaria, Germany; Institute for Advanced Study, Technical University of Munich, Garching, 85748, Bavaria, Germany
| | - Florian Schaff
- Chair of Biomedical Physics, Department of Physics, School of Natural Sciences, Technical University of Munich, Garching, 85748, Bavaria, Germany; Munich Institute of Biomedical Engineering, Technical University of Munich, Garching, 85748, Bavaria, Germany
| | - Tobias Lasser
- Munich Institute of Biomedical Engineering, Technical University of Munich, Garching, 85748, Bavaria, Germany; Computational Imaging and Inverse Problems, Department of Computer Science, School of Computation, Information, and Technology, Technical University of Munich, Garching, 85748, Bavaria, Germany
| | - Daniela Pfeiffer
- Department of Diagnostic and Interventional Radiology, School of Medicine and Health, Klinikum rechts der Isar, Technical University of Munich, Munich, 81675, Bavaria, Germany; Institute for Advanced Study, Technical University of Munich, Garching, 85748, Bavaria, Germany
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5
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Alqahtani MM, Alanazi AMM, Algarni SS, Aljohani H, Alenezi FK, F Alotaibi T, Alotaibi M, K Alqahtani M, Alahmari M, S Alwadeai K, M Alghamdi S, Almeshari MA, Alshammari TF, Mumenah N, Al Harbi E, Al Nufaiei ZF, Alhuthail E, Alzahrani E, Alahmadi H, Alarifi A, Zaidan A, T Ismaeil T. Unveiling the Influence of AI on Advancements in Respiratory Care: Narrative Review. Interact J Med Res 2024; 13:e57271. [PMID: 39705080 PMCID: PMC11699506 DOI: 10.2196/57271] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2024] [Revised: 09/22/2024] [Accepted: 10/28/2024] [Indexed: 12/21/2024] Open
Abstract
BACKGROUND Artificial intelligence is experiencing rapid growth, with continual innovation and advancements in the health care field. OBJECTIVE This study aims to evaluate the application of artificial intelligence technologies across various domains of respiratory care. METHODS We conducted a narrative review to examine the latest advancements in the use of artificial intelligence in the field of respiratory care. The search was independently conducted by respiratory care experts, each focusing on their respective scope of practice and area of interest. RESULTS This review illuminates the diverse applications of artificial intelligence, highlighting its use in areas associated with respiratory care. Artificial intelligence is harnessed across various areas in this field, including pulmonary diagnostics, respiratory care research, critical care or mechanical ventilation, pulmonary rehabilitation, telehealth, public health or health promotion, sleep clinics, home care, smoking or vaping behavior, and neonates and pediatrics. With its multifaceted utility, artificial intelligence can enhance the field of respiratory care, potentially leading to superior health outcomes for individuals under this extensive umbrella. CONCLUSIONS As artificial intelligence advances, elevating academic standards in the respiratory care profession becomes imperative, allowing practitioners to contribute to research and understand artificial intelligence's impact on respiratory care. The permanent integration of artificial intelligence into respiratory care creates the need for respiratory therapists to positively influence its progression. By participating in artificial intelligence development, respiratory therapists can augment their clinical capabilities, knowledge, and patient outcomes.
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Affiliation(s)
- Mohammed M Alqahtani
- Department of Respiratory Therapy, College of Applied Medical Sciences, King Saud bin Abdulaziz University for Health Sciences, Riyadh, Saudi Arabia
- King Abdullah International Medical Research Center, Riyadh, Saudi Arabia
- Department of Respiratory Services, King Abdulaziz Medical City, Ministry of National Guard Health Affairs, Riyadh, Saudi Arabia
| | - Abdullah M M Alanazi
- Department of Respiratory Therapy, College of Applied Medical Sciences, King Saud bin Abdulaziz University for Health Sciences, Riyadh, Saudi Arabia
- King Abdullah International Medical Research Center, Riyadh, Saudi Arabia
- Department of Respiratory Services, King Abdulaziz Medical City, Ministry of National Guard Health Affairs, Riyadh, Saudi Arabia
| | - Saleh S Algarni
- Department of Respiratory Therapy, College of Applied Medical Sciences, King Saud bin Abdulaziz University for Health Sciences, Riyadh, Saudi Arabia
- King Abdullah International Medical Research Center, Riyadh, Saudi Arabia
- Department of Respiratory Services, King Abdulaziz Medical City, Ministry of National Guard Health Affairs, Riyadh, Saudi Arabia
| | - Hassan Aljohani
- Department of Respiratory Therapy, College of Applied Medical Sciences, King Saud bin Abdulaziz University for Health Sciences, Riyadh, Saudi Arabia
- King Abdullah International Medical Research Center, Riyadh, Saudi Arabia
- Department of Respiratory Services, King Abdulaziz Medical City, Ministry of National Guard Health Affairs, Riyadh, Saudi Arabia
| | - Faraj K Alenezi
- King Abdullah International Medical Research Center, Riyadh, Saudi Arabia
- Anesthesia Technology Department, College of Applied Medical Sciences, King Saud Bin Abdul-Aziz University for Health Sciences, Riyadh, Saudi Arabia
| | - Tareq F Alotaibi
- Department of Respiratory Therapy, College of Applied Medical Sciences, King Saud bin Abdulaziz University for Health Sciences, Riyadh, Saudi Arabia
- King Abdullah International Medical Research Center, Riyadh, Saudi Arabia
- Department of Respiratory Services, King Abdulaziz Medical City, Ministry of National Guard Health Affairs, Riyadh, Saudi Arabia
| | - Mansour Alotaibi
- Department of Physical Therapy, Northern Border University, Arar, Saudi Arabia
| | - Mobarak K Alqahtani
- Department of Respiratory Therapy, College of Applied Medical Sciences, King Saud bin Abdulaziz University for Health Sciences, Riyadh, Saudi Arabia
- King Abdullah International Medical Research Center, Riyadh, Saudi Arabia
- Department of Respiratory Services, King Abdulaziz Medical City, Ministry of National Guard Health Affairs, Riyadh, Saudi Arabia
| | - Mushabbab Alahmari
- Department of Respiratory Therapy, College of Applied Medical Sciences, University of Bisha, Bisha, Saudi Arabia
- Health and Humanities Research Center, University of Bisha, Bisha, Saudi Arabia
| | - Khalid S Alwadeai
- Department of Rehabilitation Science, College of Applied Medical Sciences, King Saud University, Riyadh, Saudi Arabia
| | - Saeed M Alghamdi
- Clinical Technology Department, Respiratory Care Program, Faculty of Applied Medical Sciences, Umm Al-Qura University, Mekkah, Saudi Arabia
| | - Mohammed A Almeshari
- Department of Rehabilitation Science, College of Applied Medical Sciences, King Saud University, Riyadh, Saudi Arabia
| | | | - Noora Mumenah
- Department of Respiratory Therapy, College of Applied Medical Sciences, King Saud bin Abdulaziz University for Health Sciences, Riyadh, Saudi Arabia
- King Abdullah International Medical Research Center, Riyadh, Saudi Arabia
- Department of Respiratory Services, King Abdulaziz Medical City, Ministry of National Guard Health Affairs, Riyadh, Saudi Arabia
| | - Ebtihal Al Harbi
- Department of Respiratory Therapy, College of Applied Medical Sciences, King Saud bin Abdulaziz University for Health Sciences, Riyadh, Saudi Arabia
- King Abdullah International Medical Research Center, Riyadh, Saudi Arabia
- Department of Respiratory Services, King Abdulaziz Medical City, Ministry of National Guard Health Affairs, Riyadh, Saudi Arabia
| | - Ziyad F Al Nufaiei
- Department of Respiratory Therapy, College of Applied Medical Sciences, King Saud bin Abdulaziz University for Health Sciences, Jeddah, Saudi Arabia
- King Abdullah International Medical Research Center, Jeddah, Saudi Arabia
| | - Eyas Alhuthail
- King Abdullah International Medical Research Center, Riyadh, Saudi Arabia
- Basic Sciences Department, College of Sciences and Health Professions, King Saud bin Abdulaziz University for Health Sciences, Riyadh, Saudi Arabia
| | - Esam Alzahrani
- Department of Computer Engineering, Al-Baha University, Alaqiq, Saudi Arabia
| | - Husam Alahmadi
- Department of Respiratory Therapy, Faculty of Medical Rehabilitation Sciences, King Abdulaziz University, Jeddah, Saudi Arabia
| | - Abdulaziz Alarifi
- King Abdullah International Medical Research Center, Riyadh, Saudi Arabia
- Basic Sciences Department, College of Sciences and Health Professions, King Saud bin Abdulaziz University for Health Sciences, Riyadh, Saudi Arabia
| | - Amal Zaidan
- King Abdullah International Medical Research Center, Riyadh, Saudi Arabia
- Department of Public Health, College of Public Health and Health Informatics, King Saud bin Abdulaziz University for Health Sciences, Riyadh, Saudi Arabia
| | - Taha T Ismaeil
- Department of Respiratory Therapy, College of Applied Medical Sciences, King Saud bin Abdulaziz University for Health Sciences, Riyadh, Saudi Arabia
- King Abdullah International Medical Research Center, Riyadh, Saudi Arabia
- Department of Respiratory Services, King Abdulaziz Medical City, Ministry of National Guard Health Affairs, Riyadh, Saudi Arabia
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Lee AN, Hsiao A, Hasenstab KA. Evaluating the Cumulative Benefit of Inspiratory CT, Expiratory CT, and Clinical Data for COPD Diagnosis and Staging through Deep Learning. Radiol Cardiothorac Imaging 2024; 6:e240005. [PMID: 39665633 PMCID: PMC11683208 DOI: 10.1148/ryct.240005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2024]
Abstract
Purpose To measure the benefit of single-phase CT, inspiratory-expiratory CT, and clinical data for convolutional neural network (CNN)-based chronic obstructive pulmonary disease (COPD) staging. Materials and Methods This retrospective study included inspiratory and expiratory lung CT images and spirometry measurements acquired between November 2007 and April 2011 from 8893 participants (mean age, 59.6 years ± 9.0 [SD]; 53.3% [4738 of 8893] male) in the COPDGene phase I cohort (ClinicalTrials.gov: NCT00608764). CNNs were trained to predict spirometry measurements (forced expiratory volume in 1 second [FEV1], FEV1 percent predicted, and ratio of FEV1 to forced vital capacity [FEV1/FVC]) using clinical data and either single-phase or multiphase CT. Spirometry predictions were then used to predict Global Initiative for Chronic Obstructive Lung Disease (GOLD) stage. Agreement between CNN-predicted and reference standard spirometry measurements and GOLD stage was assessed using intraclass correlation coefficient (ICC) and compared using bootstrapping. Accuracy for predicting GOLD stage, within-one GOLD stage, and GOLD 0 versus 1-4 was calculated. Results CNN-predicted and reference standard spirometry measurements showed moderate to good agreement (ICC, 0.66-0.79), which improved by inclusion of clinical data (ICC, 0.70-0.85; P ≤ .04), except for FEV1/FVC in the inspiratory-phase CNN model with clinical data (P = .35) and FEV1 in the expiratory-phase CNN model with clinical data (P = .33). Single-phase CNN accuracies for GOLD stage, within-one stage, and diagnosis ranged from 59.8% to 84.1% (682-959 of 1140), with moderate to good agreement (ICC, 0.68-0.70). Accuracies of CNN models using inspiratory and expiratory images ranged from 60.0% to 86.3% (684-984 of 1140), with moderate to good agreement (ICC, 0.72). Inclusion of clinical data improved agreement and accuracy for both the single-phase CNNs (ICC, 0.72; P ≤ .001; accuracy, 65.2%-85.8% [743-978 of 1140]) and inspiratory-expiratory CNNs (ICC, 0.77-0.78; P ≤ .001; accuracy, 67.6%-88.0% [771-1003 of 1140]), except expiratory CNN with clinical data (no change in GOLD stage ICC; P = .08). Conclusion CNN-based COPD diagnosis and staging using single-phase CT provides comparable accuracy with inspiratory-expiratory CT when provided clinical data relevant to staging. Keywords: Convolutional Neural Network, Chronic Obstructive Pulmonary Disease, CT, Severity Staging, Attention Map Supplemental material is available for this article. © RSNA, 2024.
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Affiliation(s)
- Amanda N Lee
- From the Computational Science Research Center, San Diego State University, San Diego, Calif (A.N.L.); Department of Radiology, University of California San Diego, La Jolla, Calif (A.H.); and Department of Mathematics and Statistics, San Diego State University, 5500 Campanile Dr, San Diego, CA 92182 (K.A.H.)
| | - Albert Hsiao
- From the Computational Science Research Center, San Diego State University, San Diego, Calif (A.N.L.); Department of Radiology, University of California San Diego, La Jolla, Calif (A.H.); and Department of Mathematics and Statistics, San Diego State University, 5500 Campanile Dr, San Diego, CA 92182 (K.A.H.)
| | - Kyle A Hasenstab
- From the Computational Science Research Center, San Diego State University, San Diego, Calif (A.N.L.); Department of Radiology, University of California San Diego, La Jolla, Calif (A.H.); and Department of Mathematics and Statistics, San Diego State University, 5500 Campanile Dr, San Diego, CA 92182 (K.A.H.)
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7
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Li X, Lv J, Xue J, Zhang R, Li D. Challenges of AI-based pulmonary function estimation from chest x-rays. Lancet Digit Health 2024; 6:e880. [PMID: 39613372 DOI: 10.1016/s2589-7500(24)00247-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2024] [Revised: 10/18/2024] [Accepted: 11/01/2024] [Indexed: 12/01/2024]
Affiliation(s)
- Xinyu Li
- Department of Plastic and Reconstructive Surgery, Shanghai Ninth People's Hospital, Shanghai Jiao Tong University, Shanghai, 200011, China; Department of Vascular Surgery, Shanghai Ninth People's Hospital, Shanghai Jiao Tong University, Shanghai, 200011, China
| | - Jiajie Lv
- Department of Plastic and Reconstructive Surgery, Shanghai Ninth People's Hospital, Shanghai Jiao Tong University, Shanghai, 200011, China; Department of Vascular Surgery, Shanghai Ninth People's Hospital, Shanghai Jiao Tong University, Shanghai, 200011, China
| | - Jiajia Xue
- Department of Vascular Surgery, Shanghai Ninth People's Hospital, Shanghai Jiao Tong University, Shanghai, 200011, China
| | - Ruhong Zhang
- Department of Plastic and Reconstructive Surgery, Shanghai Ninth People's Hospital, Shanghai Jiao Tong University, Shanghai, 200011, China
| | - Datao Li
- Department of Plastic and Reconstructive Surgery, Shanghai Ninth People's Hospital, Shanghai Jiao Tong University, Shanghai, 200011, China.
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8
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Zhang H, Liang H, Wenjia G, Jing M, Gang S, Hongbing M. ACL-DUNet: A tumor segmentation method based on multiple attention and densely connected breast ultrasound images. PLoS One 2024; 19:e0307916. [PMID: 39485757 PMCID: PMC11530038 DOI: 10.1371/journal.pone.0307916] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2024] [Accepted: 07/13/2024] [Indexed: 11/03/2024] Open
Abstract
Breast cancer is the most common cancer in women. Breast masses are one of the distinctive signs for diagnosing breast cancer, and ultrasound is widely used for screening as a non-invasive and effective method for breast examination. In this study, we used the Mendeley and BUSI datasets, comprising 250 images (100 benign, 150 malignant) and 780 images (133 normal, 487 benign, 210 malignant), respectively. The datasets were split into 80% for training and 20% for validation. The accurate measurement and characterization of different breast tumors play a crucial role in guiding clinical decision-making. The area and shape of the different breast tumors detected are critical for clinicians to make accurate diagnostic decisions. In this study, a deep learning method for mass segmentation in breast ultrasound images is proposed, which uses densely connected U-net with attention gates (AGs) as well as channel attention modules and scale attention modules for accurate breast tumor segmentation.The densely connected network is employed in the encoding stage to enhance the network's feature extraction capabilities. Three attention modules are integrated in the decoding stage to better capture the most relevant features. After validation on the Mendeley and BUSI datasets, the experimental results demonstrate that our method achieves a Dice Similarity Coefficient (DSC) of 0.8764 and 0.8313, respectively, outperforming other deep learning approaches. The source code is located at github.com/zhanghaoCV/plos-one.
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Affiliation(s)
- Hao Zhang
- School of Computer Science and Technology, Xinjiang University, Urumqi, Xinjiang, China
| | - He Liang
- Department of Electronic Engineering, and Beijing National Research Center for Information Science and Technology, Tsinghua University, Beijing, China
| | - Guo Wenjia
- Cancer Institute, Affiliated Cancer Hospital of Xinjiang Medical University, Urumqi, Xinjiang, China
| | - Ma Jing
- School of Computer Science and Technology, Xinjiang University, Urumqi, Xinjiang, China
| | - Sun Gang
- Department of Breast and Thyroid Surgery, The Affiliated Cancer Hospital of Xinjiang Medical University, Urumqi, Xinjiang, P.R. China
- Xinjiang Cancer Center/Key Laboratory of Oncology of Xinjiang Uyghur Autonomous Region, Urumqi, Xinjiang, P.R. China
| | - Ma Hongbing
- Department of Electronic Engineering, and Beijing National Research Center for Information Science and Technology, Tsinghua University, Beijing, China
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9
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Soliman-Aboumarie H, Geers J, Lowcock D, Suji T, Kok K, Cameli M, Galiatsou E. Artificial intelligence-assisted focused cardiac ultrasound training: A survey among undergraduate medical students. ULTRASOUND (LEEDS, ENGLAND) 2024:1742271X241287923. [PMID: 39555149 PMCID: PMC11563526 DOI: 10.1177/1742271x241287923] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2024] [Accepted: 09/05/2024] [Indexed: 11/19/2024]
Abstract
Objectives Focused cardiac ultrasound (FoCUS) is increasingly applied in many specialities, and adequate education and training of physicians is therefore mandatory. This study aimed to assess the impact of artificial intelligence (AI)-assisted interactive focused cardiac ultrasound (FoCUS) teaching session on undergraduate medical students' confidence level and knowledge in cardiac ultrasound. Methods The AI-assisted interactive FoCUS teaching session was held during the 9th National Undergraduate Cardiovascular Conference in London in March 2023 and all undergraduate medical students were invited to attend, and 79 students enrolled and attended the training. Two workshops were conducted each over 3-hour period. Each workshop consisted of a theoretical lecture followed by a supervised hands-on session by experts, first workshop trained 39 students and the second workshop trained 40 students. The students' pre- and post-session knowledge and confidence levels were assessed by Likert-type-scale questionnaires filled in by the students before and immediately after the workshop. Results A total of 61 pre-session and 52 post-session questionnaires were completed. Confidence level in ultrasound skills increased significantly for all six domains after the workshop, with the greatest improvement seen in obtaining basic cardiac views (p < 0.001 for all six domains). Students strongly agreed about the effectiveness of the teaching session and supported the integration of ultrasound training into their medical curriculum. Conclusions AI-assisted interactive FoCUS training can be an effective and powerful tool to increase ultrasound skills and confidence levels of undergraduate medical students. Integration of such ultrasound courses into the medical curriculum should therefore be considered.
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Affiliation(s)
- Hatem Soliman-Aboumarie
- Department of Anaesthetics and Critical Care, Harefield Hospital, Royal Brompton and Harefield Hospitals, London, UK
- School of Cardiovascular and Metabolic Medicine & Sciences, King’s College London, London, UK
| | - Jolien Geers
- Department of Cardiology, The Brussels University Hospital, Brussels, Belgium
| | - Dominic Lowcock
- Department of Anaesthetics and Critical Care, Harefield Hospital, Royal Brompton and Harefield Hospitals, London, UK
| | - Trisha Suji
- School of Cardiovascular and Metabolic Medicine & Sciences, King’s College London, London, UK
| | - Kimberley Kok
- Department of Anaesthetics and Critical Care, Harefield Hospital, Royal Brompton and Harefield Hospitals, London, UK
| | - Matteo Cameli
- School of Cardiovascular Medicine, University of Siena, Siena, Italy
| | - Eftychia Galiatsou
- Department of Anaesthetics and Critical Care, Harefield Hospital, Royal Brompton and Harefield Hospitals, London, UK
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10
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Park H, Kang WY, Woo OH, Lee J, Yang Z, Oh S. Automated deep learning-based bone mineral density assessment for opportunistic osteoporosis screening using various CT protocols with multi-vendor scanners. Sci Rep 2024; 14:25014. [PMID: 39443535 PMCID: PMC11499650 DOI: 10.1038/s41598-024-73709-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2024] [Accepted: 09/20/2024] [Indexed: 10/25/2024] Open
Abstract
This retrospective study examined the diagnostic efficacy of automated deep learning-based bone mineral density (DL-BMD) measurements for osteoporosis screening using 422 CT datasets from four vendors in two medical centers, encompassing 159 chest, 156 abdominal, and 107 lumbar spine datasets. DL-BMD values on L1 and L2 vertebral bodies were compared with manual BMD (m-BMD) measurements using Pearson's correlation and intraclass correlation coefficients. Strong agreement was found between m-BMD and DL-BMD in total CT scans (r = 0.953, p < 0.001). The diagnostic performance of DL-BMD was assessed using receiver operating characteristic analysis for osteoporosis and low BMD by dual-energy x-ray absorptiometry (DXA) and m-BMD. Compared to DXA, DL-BMD demonstrated an AUC of 0.790 (95% CI 0.733-0.839) for low BMD and 0.769 (95% CI 0.710-0.820) for osteoporosis, with sensitivity, specificity, and accuracy of 80.8% (95% CI 74.2-86.3%), 56.3% (95% CI 43.4-68.6%), and 74.3% (95% CI 68.3-79.7%) for low BMD and 65.4% (95% CI 50.9-78.0%), 70.9% (95% CI 63.8-77.3%), and 69.7% (95% CI 63.5-75.4%) for osteoporosis, respectively. Compared to m-BMD, DL-BMD showed an AUC of 0.983 (95% CI 0.973-0.993) for low BMD and 0.972 (95% CI 0.958-0.987) for osteoporosis, with sensitivity, specificity, and accuracy of 97.3% (95% CI 94.5-98.9%), 85.2% (95% CI 78.8-90.3%), and 92.7% (95% CI 89.7-95.0%) for low BMD and 94.4% (95% CI 88.3-97.9%), 89.5% (95% CI 85.6-92.7%), and 90.8% (95% CI 87.6-93.4%) for osteoporosis, respectively. The DL-based method can provide accurate and reliable BMD assessments across diverse CT protocols and scanners.
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Affiliation(s)
- Heejun Park
- Department of Radiology, Guro Hospital, Korea University Medical Center, Seoul, Republic of Korea
| | - Woo Young Kang
- Department of Radiology, Guro Hospital, Korea University Medical Center, Seoul, Republic of Korea.
| | - Ok Hee Woo
- Department of Radiology, Guro Hospital, Korea University Medical Center, Seoul, Republic of Korea
| | - Jemyoung Lee
- ClariPi Inc, Seoul, Republic of Korea
- Department of Applied Bioengineering, Seoul National University, Seoul, Republic of Korea
| | - Zepa Yang
- Department of Radiology, Guro Hospital, Korea University Medical Center, Seoul, Republic of Korea
| | - Sangseok Oh
- Department of Radiology, Guro Hospital, Korea University Medical Center, Seoul, Republic of Korea
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11
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Zhang Z, Wu F, Zhou Y, Yu D, Sun C, Xiong X, Situ Z, Liu Z, Gu A, Huang X, Zheng Y, Deng Z, Zhao N, Rong Z, He J, Xie G, Ran P. Detection of chronic obstructive pulmonary disease with deep learning using inspiratory and expiratory chest computed tomography and clinical information. J Thorac Dis 2024; 16:6101-6111. [PMID: 39444883 PMCID: PMC11494531 DOI: 10.21037/jtd-24-367] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2024] [Accepted: 08/02/2024] [Indexed: 10/25/2024]
Abstract
Background In recent years, more and more patients with chronic obstructive pulmonary disease (COPD) have remained undiagnosed despite having undergone medical examination. This study aimed to develop a convolutional neural network (CNN) model for automatically detecting COPD using double-phase (inspiratory and expiratory) chest computed tomography (CT) images and clinical information. Methods A total of 2,047 participants, including never-smokers, ex-smokers, and current smokers, were prospectively recruited from three hospitals. The double-phase CT images and clinical information of each participant were collected for training the proposed CNN model which integrated a sequence of residual feature extracting blocks network (RFEBNet) for extracting CT image features and a fully connected feed-forward network (FCNet) for extracting clinical features. In addition, the RFEBNet utilizing double- or single-phase CT images and the FCNet using clinical information were conducted for comparison. Results The proposed CNN model, which utilized double-phase CT images and clinical information, outperformed other models in detecting COPD with an area under the receiver operating characteristic curve (AUC) of 0.930 [95% confidence interval (CI): 0.913-0.951] on an internal test set (n=307). The AUC was higher than the RFEBNet using double-phase CT images (AUC =0.912, 95% CI: 0.891-0.932), single inspiratory CT images (AUC =0.888, 95% CI: 0.863-0.915), single expiratory CT images (AUC =0.897, 95% CI: 0.874-0.925), and FCNet using clinical information (AUC =0.805, 95% CI: 0.777-0.841). The proposed model also achieved the best performance on an external test (n=516) with an AUC of 0.896 (95% CI: 0.871-0.931). Conclusions The proposed CNN model using double-phase CT images and clinical information can automatically detect COPD with high accuracy.
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Affiliation(s)
- Zhuoneng Zhang
- School of Biomedical Engineering, Guangzhou Medical University, Guangzhou, China
| | - Fan Wu
- Guangzhou Institute of Respiratory Health & State Key Laboratory of Respiratory Disease & National Center for Respiratory Medicine & National Clinical Research Center for Respiratory Disease, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, China
- Guangzhou National Laboratory, Guangzhou, China
| | - Yumin Zhou
- Guangzhou Institute of Respiratory Health & State Key Laboratory of Respiratory Disease & National Center for Respiratory Medicine & National Clinical Research Center for Respiratory Disease, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, China
- Guangzhou National Laboratory, Guangzhou, China
| | - Donglin Yu
- School of Biomedical Engineering, Guangzhou Medical University, Guangzhou, China
| | - Chuanqi Sun
- School of Biomedical Engineering, Guangzhou Medical University, Guangzhou, China
| | - Xiangyu Xiong
- School of Biomedical Engineering, Guangzhou Medical University, Guangzhou, China
| | - Zhiquan Situ
- School of Biomedical Engineering, Guangzhou Medical University, Guangzhou, China
| | - Zeping Liu
- School of Biomedical Engineering, Guangzhou Medical University, Guangzhou, China
| | - Anyan Gu
- School of Biomedical Engineering, Guangzhou Medical University, Guangzhou, China
| | - Xin Huang
- School of Biomedical Engineering, Guangzhou Medical University, Guangzhou, China
| | - Youlan Zheng
- Guangzhou Institute of Respiratory Health & State Key Laboratory of Respiratory Disease & National Center for Respiratory Medicine & National Clinical Research Center for Respiratory Disease, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, China
| | - Zhishan Deng
- Guangzhou Institute of Respiratory Health & State Key Laboratory of Respiratory Disease & National Center for Respiratory Medicine & National Clinical Research Center for Respiratory Disease, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, China
| | - Ningning Zhao
- Guangzhou Institute of Respiratory Health & State Key Laboratory of Respiratory Disease & National Center for Respiratory Medicine & National Clinical Research Center for Respiratory Disease, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, China
| | - Zhaowei Rong
- School of Biomedical Engineering, Guangzhou Medical University, Guangzhou, China
| | - Ji He
- School of Biomedical Engineering, Guangzhou Medical University, Guangzhou, China
| | - Guoxi Xie
- School of Biomedical Engineering, Guangzhou Medical University, Guangzhou, China
| | - Pixin Ran
- Guangzhou Institute of Respiratory Health & State Key Laboratory of Respiratory Disease & National Center for Respiratory Medicine & National Clinical Research Center for Respiratory Disease, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, China
- Guangzhou National Laboratory, Guangzhou, China
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12
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Wu Y, Xia S, Liang Z, Chen R, Qi S. Artificial intelligence in COPD CT images: identification, staging, and quantitation. Respir Res 2024; 25:319. [PMID: 39174978 PMCID: PMC11340084 DOI: 10.1186/s12931-024-02913-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2024] [Accepted: 07/09/2024] [Indexed: 08/24/2024] Open
Abstract
Chronic obstructive pulmonary disease (COPD) stands as a significant global health challenge, with its intricate pathophysiological manifestations often demanding advanced diagnostic strategies. The recent applications of artificial intelligence (AI) within the realm of medical imaging, especially in computed tomography, present a promising avenue for transformative changes in COPD diagnosis and management. This review delves deep into the capabilities and advancements of AI, particularly focusing on machine learning and deep learning, and their applications in COPD identification, staging, and imaging phenotypes. Emphasis is laid on the AI-powered insights into emphysema, airway dynamics, and vascular structures. The challenges linked with data intricacies and the integration of AI in the clinical landscape are discussed. Lastly, the review casts a forward-looking perspective, highlighting emerging innovations in AI for COPD imaging and the potential of interdisciplinary collaborations, hinting at a future where AI doesn't just support but pioneers breakthroughs in COPD care. Through this review, we aim to provide a comprehensive understanding of the current state and future potential of AI in shaping the landscape of COPD diagnosis and management.
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Affiliation(s)
- Yanan Wu
- College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, China
- Key Laboratory of Intelligent Computing in Medical Image, Ministry of Education, Northeastern University, Shenyang, China
| | - Shuyue Xia
- Respiratory Department, Central Hospital Affiliated to Shenyang Medical College, Shenyang, China
- Key Laboratory of Medicine and Engineering for Chronic Obstructive Pulmonary Disease in Liaoning Province, Shenyang, China
| | - Zhenyu Liang
- State Key Laboratory of Respiratory Disease, National Clinical Research Center for Respiratory Disease, Guangzhou Institute of Respiratory Health, The National Center for Respiratory Medicine, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, China
| | - Rongchang Chen
- State Key Laboratory of Respiratory Disease, National Clinical Research Center for Respiratory Disease, Guangzhou Institute of Respiratory Health, The National Center for Respiratory Medicine, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, China
- Shenzhen Institute of Respiratory Disease, Shenzhen People's Hospital, Shenzhen, China
| | - Shouliang Qi
- College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, China.
- Key Laboratory of Intelligent Computing in Medical Image, Ministry of Education, Northeastern University, Shenyang, China.
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13
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D Almeida S, Norajitra T, Lüth CT, Wald T, Weru V, Nolden M, Jäger PF, von Stackelberg O, Heußel CP, Weinheimer O, Biederer J, Kauczor HU, Maier-Hein K. How do deep-learning models generalize across populations? Cross-ethnicity generalization of COPD detection. Insights Imaging 2024; 15:198. [PMID: 39112910 PMCID: PMC11306482 DOI: 10.1186/s13244-024-01781-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2024] [Accepted: 07/11/2024] [Indexed: 08/10/2024] Open
Abstract
OBJECTIVES To evaluate the performance and potential biases of deep-learning models in detecting chronic obstructive pulmonary disease (COPD) on chest CT scans across different ethnic groups, specifically non-Hispanic White (NHW) and African American (AA) populations. MATERIALS AND METHODS Inspiratory chest CT and clinical data from 7549 Genetic epidemiology of COPD individuals (mean age 62 years old, 56-69 interquartile range), including 5240 NHW and 2309 AA individuals, were retrospectively analyzed. Several factors influencing COPD binary classification performance on different ethnic populations were examined: (1) effects of training population: NHW-only, AA-only, balanced set (half NHW, half AA) and the entire set (NHW + AA all); (2) learning strategy: three supervised learning (SL) vs. three self-supervised learning (SSL) methods. Distribution shifts across ethnicity were further assessed for the top-performing methods. RESULTS The learning strategy significantly influenced model performance, with SSL methods achieving higher performances compared to SL methods (p < 0.001), across all training configurations. Training on balanced datasets containing NHW and AA individuals resulted in improved model performance compared to population-specific datasets. Distribution shifts were found between ethnicities for the same health status, particularly when models were trained on nearest-neighbor contrastive SSL. Training on a balanced dataset resulted in fewer distribution shifts across ethnicity and health status, highlighting its efficacy in reducing biases. CONCLUSION Our findings demonstrate that utilizing SSL methods and training on large and balanced datasets can enhance COPD detection model performance and reduce biases across diverse ethnic populations. These findings emphasize the importance of equitable AI-driven healthcare solutions for COPD diagnosis. CRITICAL RELEVANCE STATEMENT Self-supervised learning coupled with balanced datasets significantly improves COPD detection model performance, addressing biases across diverse ethnic populations and emphasizing the crucial role of equitable AI-driven healthcare solutions. KEY POINTS Self-supervised learning methods outperform supervised learning methods, showing higher AUC values (p < 0.001). Balanced datasets with non-Hispanic White and African American individuals improve model performance. Training on diverse datasets enhances COPD detection accuracy. Ethnically diverse datasets reduce bias in COPD detection models. SimCLR models mitigate biases in COPD detection across ethnicities.
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Affiliation(s)
- Silvia D Almeida
- Division of Medical Image Computing, German Cancer Research Center (DKFZ), Heidelberg, Germany.
- Translational Lung Research Center Heidelberg (TLRC), Member of the German Center for Lung Research (DZL), Heidelberg, Germany.
- Medical Faculty, Heidelberg University, Heidelberg, Germany.
- National Center for Tumor Diseases (NCT), NCT Heidelberg, a partnership between DKFZ and Heidelberg University Medical Center, Heidelberg, Germany.
| | - Tobias Norajitra
- Division of Medical Image Computing, German Cancer Research Center (DKFZ), Heidelberg, Germany
- Translational Lung Research Center Heidelberg (TLRC), Member of the German Center for Lung Research (DZL), Heidelberg, Germany
| | - Carsten T Lüth
- Interactive Machine Learning Group (IML), German Cancer Research Center (DKFZ), Heidelberg, Germany
- Helmholtz Imaging, German Cancer Research Center (DKFZ), Heidelberg, Germany
| | - Tassilo Wald
- Division of Medical Image Computing, German Cancer Research Center (DKFZ), Heidelberg, Germany
- Helmholtz Imaging, German Cancer Research Center (DKFZ), Heidelberg, Germany
| | - Vivienn Weru
- Division of Biostatistics, German Cancer Research Center (DKFZ), Heidelberg, Germany
| | - Marco Nolden
- Division of Medical Image Computing, German Cancer Research Center (DKFZ), Heidelberg, Germany
- Pattern Analysis and Learning Group, Radiation Oncology, Heidelberg University Hospital, Heidelberg, Germany
| | - Paul F Jäger
- Interactive Machine Learning Group (IML), German Cancer Research Center (DKFZ), Heidelberg, Germany
- Helmholtz Imaging, German Cancer Research Center (DKFZ), Heidelberg, Germany
| | - Oyunbileg von Stackelberg
- Translational Lung Research Center Heidelberg (TLRC), Member of the German Center for Lung Research (DZL), Heidelberg, Germany
- Diagnostic and Interventional Radiology, University Hospital, Heidelberg, Germany
| | - Claus Peter Heußel
- Translational Lung Research Center Heidelberg (TLRC), Member of the German Center for Lung Research (DZL), Heidelberg, Germany
- Diagnostic and Interventional Radiology, University Hospital, Heidelberg, Germany
- Diagnostic and Interventional Radiology with Nuclear Medicine, Thoraxklinik at University Hospital, Heidelberg, Germany
| | - Oliver Weinheimer
- Translational Lung Research Center Heidelberg (TLRC), Member of the German Center for Lung Research (DZL), Heidelberg, Germany
- Diagnostic and Interventional Radiology, University Hospital, Heidelberg, Germany
| | - Jürgen Biederer
- Translational Lung Research Center Heidelberg (TLRC), Member of the German Center for Lung Research (DZL), Heidelberg, Germany
- Diagnostic and Interventional Radiology, University Hospital, Heidelberg, Germany
- University of Latvia, Faculty of Medicine, Raina Bulvaris 19, Riga, LV-1586, Latvia
- Christian-Albrechts-Universität zu Kiel, Faculty of Medicine, D-24098, Kiel, Germany
| | - Hans-Ulrich Kauczor
- Translational Lung Research Center Heidelberg (TLRC), Member of the German Center for Lung Research (DZL), Heidelberg, Germany
- Diagnostic and Interventional Radiology, University Hospital, Heidelberg, Germany
| | - Klaus Maier-Hein
- Division of Medical Image Computing, German Cancer Research Center (DKFZ), Heidelberg, Germany
- Translational Lung Research Center Heidelberg (TLRC), Member of the German Center for Lung Research (DZL), Heidelberg, Germany
- National Center for Tumor Diseases (NCT), NCT Heidelberg, a partnership between DKFZ and Heidelberg University Medical Center, Heidelberg, Germany
- Helmholtz Imaging, German Cancer Research Center (DKFZ), Heidelberg, Germany
- Pattern Analysis and Learning Group, Radiation Oncology, Heidelberg University Hospital, Heidelberg, Germany
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14
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Moffett AT, Halpern SD, Weissman GE. The Effect of a Post-Bronchodilator FEV 1/FVC < 0.7 on COPD Diagnosis and Treatment: A Regression Discontinuity Design. MEDRXIV : THE PREPRINT SERVER FOR HEALTH SCIENCES 2024:2024.08.05.24311519. [PMID: 39148856 PMCID: PMC11326314 DOI: 10.1101/2024.08.05.24311519] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 08/17/2024]
Abstract
Background Global Initiative for Chronic Obstructive Lung Disease (GOLD) guidelines recommend the diagnosis of chronic obstructive pulmonary disease (COPD) only in patients with a post-bronchodilator forced expiratory volume in 1 second to forced vital capacity ratio (FEV1/FVC) less than 0.7. However the impact of this recommendation on clinical practice is unknown. Research Question What is the effect of a documented post-bronchodilator FEV1/FVC < 0.7 on the diagnosis and treatment of COPD? Study Design and Methods We used a national electronic health record database to identify clinical encounters between 2007 to 2022 with patients 18 years of age and older in which a post-bronchodilator FEV1/FVC value was documented. An encounter was associated with a COPD diagnosis if a diagnostic code for COPD was assigned, and was associated with COPD treatment if a prescription for a medication commonly used to treat COPD was filled within 90 days. We used a regression discontinuity design to measure the effect of a post-bronchodilator FEV1/FVC < 0.7 on COPD diagnosis and treatment. Results Among 27 817 clinical encounters, involving 18 991 patients, a post-bronchodilator FEV1/FVC < 0.7 was present in 14 876 (53.4%). The presence of a documented post-bronchodilator FEV1/FVC < 0.7 had a small effect on the probability of a COPD diagnosis, increasing by 6.0% (95% confidence interval [CI] 1.1% to 10.9%) from 38.0% just above the 0.7 cutoff to 44.0% just below this cutoff. The presence of a documented post-bronchodilator FEV1/FVC had no effect on the probability of COPD treatment (-2.1%, 95% CI -7.2% to 3.0%). Interpretation The presence of a documented post-bronchodilator FEV1/FVC < 0.7 has only a small effect on the probability that a clinician will make a guideline-concordant diagnosis of COPD and has no effect on corresponding treatment decisions.
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Affiliation(s)
- Alexander T. Moffett
- Division of Pulmonary, Allergy, and Critical Care Medicine, Department of Medicine, University of Pennsylvania, Philadelphia, PA, USA
- Palliative and Advanced Illness Research (PAIR) Center, University of Pennsylvania, Philadelphia, PA, USA
- Leonard Davis Institute of Health Economics, University of Pennsylvania, Philadelphia, PA, USA
| | - Scott D. Halpern
- Division of Pulmonary, Allergy, and Critical Care Medicine, Department of Medicine, University of Pennsylvania, Philadelphia, PA, USA
- Palliative and Advanced Illness Research (PAIR) Center, University of Pennsylvania, Philadelphia, PA, USA
- Leonard Davis Institute of Health Economics, University of Pennsylvania, Philadelphia, PA, USA
- Department of Biostatistics, Epidemiology and Informatics, University of Pennsylvania, Philadelphia, PA, USA
- Department of Medical Ethics and Health Policy, University of Pennsylvania, Philadelphia, PA, USA
| | - Gary E. Weissman
- Division of Pulmonary, Allergy, and Critical Care Medicine, Department of Medicine, University of Pennsylvania, Philadelphia, PA, USA
- Palliative and Advanced Illness Research (PAIR) Center, University of Pennsylvania, Philadelphia, PA, USA
- Leonard Davis Institute of Health Economics, University of Pennsylvania, Philadelphia, PA, USA
- Department of Biostatistics, Epidemiology and Informatics, University of Pennsylvania, Philadelphia, PA, USA
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15
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Labaki WW, Agusti A, Bhatt SP, Bodduluri S, Criner GJ, Fabbri LM, Halpin DMG, Lynch DA, Mannino DM, Miravitlles M, Papi A, Sin DD, Washko GR, Kazerooni EA, Han MK. Leveraging Computed Tomography Imaging to Detect Chronic Obstructive Pulmonary Disease and Concomitant Chronic Diseases. Am J Respir Crit Care Med 2024; 210:281-287. [PMID: 38843079 PMCID: PMC11348973 DOI: 10.1164/rccm.202402-0407pp] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2024] [Accepted: 06/04/2024] [Indexed: 08/02/2024] Open
Affiliation(s)
| | - Alvar Agusti
- Cathedra Salut Respiratoria, University of Barcelona, Barcelona, Spain
- Pulmonary Service, Respiratory Institute, Clinic Barcelona, Barcelona, Spain
- Fundació Clinic, Institut d’Investigacions Biomèdiques August Pi i Sunyer, Barcelona, Spain
- Centro de Investigación Biomédica en Red de Enfermedades Respiratorias, Barcelona, Spain
| | - Surya P. Bhatt
- Division of Pulmonary, Allergy and Critical Care Medicine, University of Alabama at Birmingham, Birmingham, Alabama
| | - Sandeep Bodduluri
- Division of Pulmonary, Allergy and Critical Care Medicine, University of Alabama at Birmingham, Birmingham, Alabama
| | - Gerard J. Criner
- Department of Thoracic Medicine and Surgery, Lewis Katz School of Medicine at Temple University, Philadelphia, Pennsylvania
| | | | - David M. G. Halpin
- Respiratory Medicine, University of Exeter Medical School, Exeter, United Kingdom
| | - David A. Lynch
- Department of Radiology, National Jewish Health, Denver, Colorado
| | - David M. Mannino
- Department of Medicine, University of Kentucky, Lexington, Kentucky
| | - Marc Miravitlles
- Centro de Investigación Biomédica en Red de Enfermedades Respiratorias, Barcelona, Spain
- Neumología, Hospital Universitari Vall d’Hebron/Vall d’Hebron Institut de Recerca, Barcelona, Spain
| | - Alberto Papi
- Section of Respiratory Medicine, University of Ferrara, Ferrara, Italy
| | - Don D. Sin
- Centre for Heart Lung Innovation, St. Paul’s Hospital and University of British Columbia, Vancouver, British Columbia, Canada
- Division of Respiratory Medicine, University of British Columbia, Vancouver, British Columbia, Canada
| | - George R. Washko
- Division of Pulmonary and Critical Care Medicine and
- Applied Chest Imaging Laboratory, Brigham and Women’s Hospital, Harvard Medical School, Boston, Massachusetts
| | - Ella A. Kazerooni
- Division of Pulmonary and Critical Care Medicine and
- Department of Radiology, University of Michigan, Ann Arbor, Michigan
| | - MeiLan K. Han
- Division of Pulmonary and Critical Care Medicine and
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Chang JY, Makary MS. Evolving and Novel Applications of Artificial Intelligence in Thoracic Imaging. Diagnostics (Basel) 2024; 14:1456. [PMID: 39001346 PMCID: PMC11240935 DOI: 10.3390/diagnostics14131456] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2024] [Revised: 07/01/2024] [Accepted: 07/06/2024] [Indexed: 07/16/2024] Open
Abstract
The advent of artificial intelligence (AI) is revolutionizing medicine, particularly radiology. With the development of newer models, AI applications are demonstrating improved performance and versatile utility in the clinical setting. Thoracic imaging is an area of profound interest, given the prevalence of chest imaging and the significant health implications of thoracic diseases. This review aims to highlight the promising applications of AI within thoracic imaging. It examines the role of AI, including its contributions to improving diagnostic evaluation and interpretation, enhancing workflow, and aiding in invasive procedures. Next, it further highlights the current challenges and limitations faced by AI, such as the necessity of 'big data', ethical and legal considerations, and bias in representation. Lastly, it explores the potential directions for the application of AI in thoracic radiology.
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Affiliation(s)
- Jin Y Chang
- Department of Radiology, The Ohio State University College of Medicine, Columbus, OH 43210, USA
| | - Mina S Makary
- Department of Radiology, The Ohio State University College of Medicine, Columbus, OH 43210, USA
- Division of Vascular and Interventional Radiology, Department of Radiology, The Ohio State University Wexner Medical Center, Columbus, OH 43210, USA
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17
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Yun C, Tang F, Gao Z, Wang W, Bai F, Miller JD, Liu H, Lee Y, Lou Q. Construction of Risk Prediction Model of Type 2 Diabetic Kidney Disease Based on Deep Learning. Diabetes Metab J 2024; 48:771-779. [PMID: 38685670 PMCID: PMC11307115 DOI: 10.4093/dmj.2023.0033] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/03/2023] [Accepted: 05/27/2023] [Indexed: 05/02/2024] Open
Abstract
BACKGRUOUND This study aimed to develop a diabetic kidney disease (DKD) prediction model using long short term memory (LSTM) neural network and evaluate its performance using accuracy, precision, recall, and area under the curve (AUC) of the receiver operating characteristic (ROC) curve. METHODS The study identified DKD risk factors through literature review and physician focus group, and collected 7 years of data from 6,040 type 2 diabetes mellitus patients based on the risk factors. Pytorch was used to build the LSTM neural network, with 70% of the data used for training and the other 30% for testing. Three models were established to examine the impact of glycosylated hemoglobin (HbA1c), systolic blood pressure (SBP), and pulse pressure (PP) variabilities on the model's performance. RESULTS The developed model achieved an accuracy of 83% and an AUC of 0.83. When the risk factor of HbA1c variability, SBP variability, or PP variability was removed one by one, the accuracy of each model was significantly lower than that of the optimal model, with an accuracy of 78% (P<0.001), 79% (P<0.001), and 81% (P<0.001), respectively. The AUC of ROC was also significantly lower for each model, with values of 0.72 (P<0.001), 0.75 (P<0.001), and 0.77 (P<0.05). CONCLUSION The developed DKD risk predictive model using LSTM neural networks demonstrated high accuracy and AUC value. When HbA1c, SBP, and PP variabilities were added to the model as featured characteristics, the model's performance was greatly improved.
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Affiliation(s)
- Chuan Yun
- Department of Endocrinology, The First Affiliated Hospital of Hainan Medical University, Haikou, China
| | - Fangli Tang
- International School of Nursing, Hainan Medical University, Haikou, China
| | - Zhenxiu Gao
- School of International Education, Nanjing Medical University, Nanjing, China
| | - Wenjun Wang
- Department of Endocrinology, The First Affiliated Hospital of Hainan Medical University, Haikou, China
| | - Fang Bai
- Nursing Department 531, The First Affiliated Hospital of Hainan Medical University, Haikou, China
| | - Joshua D. Miller
- Department of Medicine, Division of Endocrinology & Metabolism, Renaissance School of Medicine, Stony Brook University, Stony Brook, NY, USA
| | - Huanhuan Liu
- Department of Endocrinology, Hainan General Hospital, Haikou, China
| | | | - Qingqing Lou
- The First Affiliated Hospital of Hainan Medical University, Hainan Clinical Research Center for Metabolic Disease, Haikou, China
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Almeida SD, Norajitra T, Lüth CT, Wald T, Weru V, Nolden M, Jäger PF, von Stackelberg O, Heußel CP, Weinheimer O, Biederer J, Kauczor HU, Maier-Hein K. Prediction of disease severity in COPD: a deep learning approach for anomaly-based quantitative assessment of chest CT. Eur Radiol 2024; 34:4379-4392. [PMID: 38150075 PMCID: PMC11213737 DOI: 10.1007/s00330-023-10540-3] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2023] [Revised: 11/13/2023] [Accepted: 12/11/2023] [Indexed: 12/28/2023]
Abstract
OBJECTIVES To quantify regional manifestations related to COPD as anomalies from a modeled distribution of normal-appearing lung on chest CT using a deep learning (DL) approach, and to assess its potential to predict disease severity. MATERIALS AND METHODS Paired inspiratory/expiratory CT and clinical data from COPDGene and COSYCONET cohort studies were included. COPDGene data served as training/validation/test data sets (N = 3144/786/1310) and COSYCONET as external test set (N = 446). To differentiate low-risk (healthy/minimal disease, [GOLD 0]) from COPD patients (GOLD 1-4), the self-supervised DL model learned semantic information from 50 × 50 × 50 voxel samples from segmented intact lungs. An anomaly detection approach was trained to quantify lung abnormalities related to COPD, as regional deviations. Four supervised DL models were run for comparison. The clinical and radiological predictive power of the proposed anomaly score was assessed using linear mixed effects models (LMM). RESULTS The proposed approach achieved an area under the curve of 84.3 ± 0.3 (p < 0.001) for COPDGene and 76.3 ± 0.6 (p < 0.001) for COSYCONET, outperforming supervised models even when including only inspiratory CT. Anomaly scores significantly improved fitting of LMM for predicting lung function, health status, and quantitative CT features (emphysema/air trapping; p < 0.001). Higher anomaly scores were significantly associated with exacerbations for both cohorts (p < 0.001) and greater dyspnea scores for COPDGene (p < 0.001). CONCLUSION Quantifying heterogeneous COPD manifestations as anomaly offers advantages over supervised methods and was found to be predictive for lung function impairment and morphology deterioration. CLINICAL RELEVANCE STATEMENT Using deep learning, lung manifestations of COPD can be identified as deviations from normal-appearing chest CT and attributed an anomaly score which is consistent with decreased pulmonary function, emphysema, and air trapping. KEY POINTS • A self-supervised DL anomaly detection method discriminated low-risk individuals and COPD subjects, outperforming classic DL methods on two datasets (COPDGene AUC = 84.3%, COSYCONET AUC = 76.3%). • Our contrastive task exhibits robust performance even without the inclusion of expiratory images, while voxel-based methods demonstrate significant performance enhancement when incorporating expiratory images, in the COPDGene dataset. • Anomaly scores improved the fitting of linear mixed effects models in predicting clinical parameters and imaging alterations (p < 0.001) and were directly associated with clinical outcomes (p < 0.001).
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Affiliation(s)
- Silvia D Almeida
- Division of Medical Image Computing, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, 69120, Heidelberg, Germany.
- Translational Lung Research Center Heidelberg (TLRC), Member of the German Lung Research Center (DZL), Heidelberg, Germany.
- Medical Faculty, Heidelberg University, Heidelberg, Germany.
- National Center for Tumor Diseases (NCT), NCT Heidelberg, a partnership between DKFZ and Heidelberg University Medical Center, Heidelberg, Germany.
| | - Tobias Norajitra
- Division of Medical Image Computing, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, 69120, Heidelberg, Germany
- Translational Lung Research Center Heidelberg (TLRC), Member of the German Lung Research Center (DZL), Heidelberg, Germany
| | - Carsten T Lüth
- Interactive Machine Learning Group (IML), German Cancer Research Center (DKFZ), Heidelberg, Germany
- Helmholtz Imaging, German Cancer Research Center (DKFZ), Heidelberg, Germany
| | - Tassilo Wald
- Division of Medical Image Computing, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, 69120, Heidelberg, Germany
- Helmholtz Imaging, German Cancer Research Center (DKFZ), Heidelberg, Germany
| | - Vivienn Weru
- Division of Biostatistics, German Cancer Research Center (DKFZ), Heidelberg, Germany
| | - Marco Nolden
- Division of Medical Image Computing, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, 69120, Heidelberg, Germany
- Pattern Analysis and Learning Group, Radiation Oncology, Heidelberg University Hospital, Heidelberg, Germany
| | - Paul F Jäger
- Interactive Machine Learning Group (IML), German Cancer Research Center (DKFZ), Heidelberg, Germany
- Helmholtz Imaging, German Cancer Research Center (DKFZ), Heidelberg, Germany
| | - Oyunbileg von Stackelberg
- Pattern Analysis and Learning Group, Radiation Oncology, Heidelberg University Hospital, Heidelberg, Germany
- Department of Diagnostic and Interventional Radiology, Heidelberg University Hospital, Heidelberg, Germany
| | - Claus Peter Heußel
- Translational Lung Research Center Heidelberg (TLRC), Member of the German Lung Research Center (DZL), Heidelberg, Germany
- Department of Diagnostic and Interventional Radiology, Heidelberg University Hospital, Heidelberg, Germany
- Diagnostic and Interventional Radiology with Nuclear Medicine, Thoraxklinik at University Hospital, Heidelberg, Germany
| | - Oliver Weinheimer
- Translational Lung Research Center Heidelberg (TLRC), Member of the German Lung Research Center (DZL), Heidelberg, Germany
- Department of Diagnostic and Interventional Radiology, Heidelberg University Hospital, Heidelberg, Germany
| | - Jürgen Biederer
- Translational Lung Research Center Heidelberg (TLRC), Member of the German Lung Research Center (DZL), Heidelberg, Germany
- Department of Diagnostic and Interventional Radiology, Heidelberg University Hospital, Heidelberg, Germany
- Faculty of Medicine, University of Latvia, Raina Bulvaris 19, Riga, LV-1586, Latvia
- Faculty of Medicine, Christian-Albrechts-Universität zu Kiel, D-24098, Kiel, Germany
| | - Hans-Ulrich Kauczor
- Translational Lung Research Center Heidelberg (TLRC), Member of the German Lung Research Center (DZL), Heidelberg, Germany
- Department of Diagnostic and Interventional Radiology, Heidelberg University Hospital, Heidelberg, Germany
| | - Klaus Maier-Hein
- Division of Medical Image Computing, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, 69120, Heidelberg, Germany.
- Translational Lung Research Center Heidelberg (TLRC), Member of the German Lung Research Center (DZL), Heidelberg, Germany.
- National Center for Tumor Diseases (NCT), NCT Heidelberg, a partnership between DKFZ and Heidelberg University Medical Center, Heidelberg, Germany.
- Helmholtz Imaging, German Cancer Research Center (DKFZ), Heidelberg, Germany.
- Pattern Analysis and Learning Group, Radiation Oncology, Heidelberg University Hospital, Heidelberg, Germany.
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Grenier PA. COPD: artificial intelligence detects and quantifies anomalies on chest CT enabling prediction of disease severity. Eur Radiol 2024; 34:4376-4378. [PMID: 38253906 DOI: 10.1007/s00330-024-10601-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2024] [Revised: 01/08/2024] [Accepted: 01/11/2024] [Indexed: 01/24/2024]
Affiliation(s)
- Philippe A Grenier
- Department of Clinical Research and Innovation, Hôpital Foch, Suresnes, France.
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20
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Koh SY, Lee JH, Park H, Goo JM. Value of CT quantification in progressive fibrosing interstitial lung disease: a deep learning approach. Eur Radiol 2024; 34:4195-4205. [PMID: 38085286 DOI: 10.1007/s00330-023-10483-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2023] [Revised: 10/23/2023] [Accepted: 10/27/2023] [Indexed: 06/29/2024]
Abstract
OBJECTIVES To evaluate the relationship of changes in the deep learning-based CT quantification of interstitial lung disease (ILD) with changes in forced vital capacity (FVC) and visual assessments of ILD progression, and to investigate their prognostic implications. METHODS This study included ILD patients with CT scans at intervals of over 2 years between January 2015 and June 2021. Deep learning-based texture analysis software was used to segment ILD findings on CT images (fibrosis: reticular opacity + honeycombing cysts; total ILD extent: ground-glass opacity + fibrosis). Patients were grouped according to the absolute decline of predicted FVC (< 5%, 5-10%, and ≥ 10%) and ILD progression assessed by thoracic radiologists, and their quantification results were compared among these groups. The associations between quantification results and survival were evaluated using multivariable Cox regression analysis. RESULTS In total, 468 patients (239 men; 64 ± 9.5 years) were included. Fibrosis and total ILD extents more increased in patients with larger FVC decline (p < .001 in both). Patients with ILD progression had higher fibrosis and total ILD extent increases than those without ILD progression (p < .001 in both). Increases in fibrosis and total ILD extent were significant prognostic factors when adjusted for absolute FVC declines of ≥ 5% (hazard ratio [HR] 1.844, p = .01 for fibrosis; HR 2.484, p < .001 for total ILD extent) and ≥ 10% (HR 2.918, p < .001 for fibrosis; HR 3.125, p < .001 for total ILD extent). CONCLUSION Changes in ILD CT quantification correlated with changes in FVC and visual assessment of ILD progression, and they were independent prognostic factors in ILD patients. CLINICAL RELEVANCE STATEMENT Quantifying the CT features of interstitial lung disease using deep learning techniques could play a key role in defining and predicting the prognosis of progressive fibrosing interstitial lung disease. KEY POINTS • Radiologic findings on high-resolution CT are important in diagnosing progressive fibrosing interstitial lung disease. • Deep learning-based quantification results for fibrosis and total interstitial lung disease extents correlated with the decline in forced vital capacity and visual assessments of interstitial lung disease progression, and emerged as independent prognostic factors. • Deep learning-based interstitial lung disease CT quantification can play a key role in diagnosing and prognosticating progressive fibrosing interstitial lung disease.
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Affiliation(s)
- Seok Young Koh
- Department of Radiology, Seoul National University Hospital, 101, Daehak-ro, Jongno-gu, Seoul, 03080, South Korea
| | - Jong Hyuk Lee
- Department of Radiology, Seoul National University Hospital, 101, Daehak-ro, Jongno-gu, Seoul, 03080, South Korea
| | - Hyungin Park
- Department of Radiology, Seoul National University Hospital, 101, Daehak-ro, Jongno-gu, Seoul, 03080, South Korea
| | - Jin Mo Goo
- Department of Radiology, Seoul National University Hospital, 101, Daehak-ro, Jongno-gu, Seoul, 03080, South Korea.
- Department of Radiology, Seoul National University College of Medicine, 101, Daehak-ro, Jongno-gu, Seoul, 03080, South Korea.
- Institute of Radiation Medicine, Seoul National University Medical Research Center, 101, Daehak-ro, Jongno-gu, Seoul, 03080, South Korea.
- Cancer Research Institute, Seoul National University, 101, Daehak-ro, Jongno-gu, Seoul, 03080, South Korea.
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21
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Sharma M, Kirby M, Fenster A, McCormack DG, Parraga G. Machine learning and magnetic resonance image texture analysis predicts accelerated lung function decline in ex-smokers with and without chronic obstructive pulmonary disease. J Med Imaging (Bellingham) 2024; 11:046001. [PMID: 39035052 PMCID: PMC11259551 DOI: 10.1117/1.jmi.11.4.046001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2024] [Revised: 05/16/2024] [Accepted: 07/02/2024] [Indexed: 07/23/2024] Open
Abstract
Purpose Our objective was to train machine-learning algorithms on hyperpolarizedHe 3 magnetic resonance imaging (MRI) datasets to generate models of accelerated lung function decline in participants with and without chronic-obstructive-pulmonary-disease. We hypothesized that hyperpolarized gas MRI ventilation, machine-learning, and multivariate modeling could be combined to predict clinically-relevant changes in forced expiratory volume in 1 s (FEV 1 ) across 3 years. Approach HyperpolarizedHe 3 MRI was acquired using a coronal Cartesian fast gradient recalled echo sequence with a partial echo and segmented using a k-means clustering algorithm. A maximum entropy mask was used to generate a region-of-interest for texture feature extraction using a custom-developed algorithm and the PyRadiomics platform. The principal component and Boruta analyses were used for feature selection. Ensemble-based and single machine-learning classifiers were evaluated using area-under-the-receiver-operator-curve and sensitivity-specificity analysis. Results We evaluated 88 ex-smoker participants with 31 ± 7 months follow-up data, 57 of whom (22 females/35 males, 70 ± 9 years) had negligible changes inFEV 1 and 31 participants (7 females/24 males, 68 ± 9 years) with worseningFEV 1 ≥ 60 mL / year . In addition, 3/88 ex-smokers reported a change in smoking status. We generated machine-learning models to predictFEV 1 decline using demographics, spirometry, and texture features, with the later yielding the highest classification accuracy of 81%. The combined model (trained on all available measurements) achieved the overall best classification accuracy of 82%; however, it was not significantly different from the model trained on MRI texture features alone. Conclusion For the first time, we have employed hyperpolarizedHe 3 MRI ventilation texture features and machine-learning to identify ex-smokers with accelerated decline inFEV 1 with 82% accuracy.
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Affiliation(s)
- Maksym Sharma
- Robarts Research Institute, London, Ontario, Canada
- Western University, Department of Medical Biophysics, London, Ontario, Canada
| | - Miranda Kirby
- Toronto Metropolitan University, Department of Physics, Toronto, Ontario, Canada
| | - Aaron Fenster
- Robarts Research Institute, London, Ontario, Canada
- Western University, Department of Medical Biophysics, London, Ontario, Canada
- Western University, Department of Medical Imaging, London, Ontario, Canada
| | - David G. McCormack
- Western University, Division of Respirology, Department of Medicine, London, Ontario, Canada
| | - Grace Parraga
- Robarts Research Institute, London, Ontario, Canada
- Western University, Department of Medical Biophysics, London, Ontario, Canada
- Western University, Division of Respirology, Department of Medicine, London, Ontario, Canada
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22
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Zhao M, Wu Y, Li Y, Zhang X, Xia S, Xu J, Chen R, Liang Z, Qi S. Learning and depicting lobe-based radiomics feature for COPD Severity staging in low-dose CT images. BMC Pulm Med 2024; 24:294. [PMID: 38915049 PMCID: PMC11197240 DOI: 10.1186/s12890-024-03109-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2024] [Accepted: 06/19/2024] [Indexed: 06/26/2024] Open
Abstract
BACKGROUND Chronic obstructive pulmonary disease (COPD) is a prevalent and debilitating respiratory condition that imposes a significant healthcare burden worldwide. Accurate staging of COPD severity is crucial for patient management and treatment planning. METHODS The retrospective study included 530 hospital patients. A lobe-based radiomics method was proposed to classify COPD severity using computed tomography (CT) images. First, we segmented the lung lobes with a convolutional neural network model. Secondly, the radiomic features of each lung lobe are extracted from CT images, the features of the five lung lobes are merged, and the selection of features is accomplished through the utilization of a variance threshold, t-Test, least absolute shrinkage and selection operator (LASSO). Finally, the COPD severity was classified by a support vector machine (SVM) classifier. RESULTS 104 features were selected for staging COPD according to the Global initiative for chronic Obstructive Lung Disease (GOLD). The SVM classifier showed remarkable performance with an accuracy of 0.63. Moreover, an additional set of 132 features were selected to distinguish between milder (GOLD I + GOLD II) and more severe instances (GOLD III + GOLD IV) of COPD. The accuracy for SVM stood at 0.87. CONCLUSIONS The proposed method proved that the novel lobe-based radiomics method can significantly contribute to the refinement of COPD severity staging. By combining radiomic features from each lung lobe, it can obtain a more comprehensive and rich set of features and better capture the CT radiomic features of the lung than simply observing the lung as a whole.
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Affiliation(s)
- Meng Zhao
- College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, China
- Key Laboratory of Intelligent Computing in Medical Image, Ministry of Education, Northeastern University, Shenyang, China
| | - Yanan Wu
- College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, China
| | - Yifu Li
- College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, China
| | - Xiaoyu Zhang
- College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, China
| | - Shuyue Xia
- Respiratory Department, Central Hospital Affiliated to Shenyang Medical College, Shenyang, China
| | - Jiaxuan Xu
- State Key Laboratory of Respiratory Disease, National Clinical Research Center for Respiratory Disease, Guangzhou Institute of Respiratory Health, The National Center for Respiratory Medicine, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, China
| | - Rongchang Chen
- State Key Laboratory of Respiratory Disease, National Clinical Research Center for Respiratory Disease, Guangzhou Institute of Respiratory Health, The National Center for Respiratory Medicine, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, China
- Key Laboratory of Respiratory Disease of Shenzhen, Shenzhen Institute of Respiratory Disease, Shenzhen People's Hospital (Second Affiliated Hospital of Jinan University, First Affiliated Hospital of South University of Science and Technology of China), Shenzhen, China
| | - Zhenyu Liang
- State Key Laboratory of Respiratory Disease, National Clinical Research Center for Respiratory Disease, Guangzhou Institute of Respiratory Health, The National Center for Respiratory Medicine, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, China.
| | - Shouliang Qi
- College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, China.
- Key Laboratory of Intelligent Computing in Medical Image, Ministry of Education, Northeastern University, Shenyang, China.
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Zeng M, Wang X, Chen W. Worldwide research landscape of artificial intelligence in lung disease: A scientometric study. Heliyon 2024; 10:e31129. [PMID: 38826704 PMCID: PMC11141367 DOI: 10.1016/j.heliyon.2024.e31129] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2023] [Revised: 05/09/2024] [Accepted: 05/10/2024] [Indexed: 06/04/2024] Open
Abstract
Purpose To perform a comprehensive bibliometric analysis of the application of artificial intelligence (AI) in lung disease to understand the current status and emerging trends of this field. Materials and methods AI-based lung disease research publications were selected from the Web of Science Core Collection. Citespace, VOS viewer and Excel were used to analyze and visualize co-authorship, co-citation, and co-occurrence analysis of authors, keywords, countries/regions, references and institutions in this field. Results Our study included a total of 5210 papers. The number of publications on AI in lung disease showed explosive growth since 2017. China and the United States lead in publication numbers. The most productive author were Li, Weimin and Qian Wei, with Shanghai Jiaotong University as the most productive institution. Radiology was the most co-cited journal. Lung cancer and COVID-19 emerged as the most studied diseases. Deep learning, convolutional neural network, lung cancer, radiomics will be the focus of future research. Conclusions AI-based diagnosis and treatment of lung disease has become a research hotspot in recent years, yielding significant results. Future work should focus on establishing multimodal AI models that incorporate clinical, imaging and laboratory information. Enhanced visualization of deep learning, AI-driven differential diagnosis model for lung disease and the creation of international large-scale lung disease databases should also be considered.
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Affiliation(s)
| | | | - Wei Chen
- Department of Radiology, Southwest Hospital, Third Military Medical University, Chongqing, China
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24
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Zhang T, Wei D, Zhu M, Gu S, Zheng Y. Self-supervised learning for medical image data with anatomy-oriented imaging planes. Med Image Anal 2024; 94:103151. [PMID: 38527405 DOI: 10.1016/j.media.2024.103151] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2023] [Revised: 12/29/2023] [Accepted: 03/20/2024] [Indexed: 03/27/2024]
Abstract
Self-supervised learning has emerged as a powerful tool for pretraining deep networks on unlabeled data, prior to transfer learning of target tasks with limited annotation. The relevance between the pretraining pretext and target tasks is crucial to the success of transfer learning. Various pretext tasks have been proposed to utilize properties of medical image data (e.g., three dimensionality), which are more relevant to medical image analysis than generic ones for natural images. However, previous work rarely paid attention to data with anatomy-oriented imaging planes, e.g., standard cardiac magnetic resonance imaging views. As these imaging planes are defined according to the anatomy of the imaged organ, pretext tasks effectively exploiting this information can pretrain the networks to gain knowledge on the organ of interest. In this work, we propose two complementary pretext tasks for this group of medical image data based on the spatial relationship of the imaging planes. The first is to learn the relative orientation between the imaging planes and implemented as regressing their intersecting lines. The second exploits parallel imaging planes to regress their relative slice locations within a stack. Both pretext tasks are conceptually straightforward and easy to implement, and can be combined in multitask learning for better representation learning. Thorough experiments on two anatomical structures (heart and knee) and representative target tasks (semantic segmentation and classification) demonstrate that the proposed pretext tasks are effective in pretraining deep networks for remarkably boosted performance on the target tasks, and superior to other recent approaches.
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Affiliation(s)
- Tianwei Zhang
- School of Computer Science and Engineering, University of Electronic Science and Technology of China, Chengdu 611731, China
| | - Dong Wei
- Jarvis Research Center, Tencent YouTu Lab, Shenzhen 518057, China
| | - Mengmeng Zhu
- School of Computer Science and Engineering, University of Electronic Science and Technology of China, Chengdu 611731, China
| | - Shi Gu
- School of Computer Science and Engineering, University of Electronic Science and Technology of China, Chengdu 611731, China.
| | - Yefeng Zheng
- Jarvis Research Center, Tencent YouTu Lab, Shenzhen 518057, China
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Zhu Z, Zhao S, Li J, Wang Y, Xu L, Jia Y, Li Z, Li W, Chen G, Wu X. Development and application of a deep learning-based comprehensive early diagnostic model for chronic obstructive pulmonary disease. Respir Res 2024; 25:167. [PMID: 38637823 PMCID: PMC11027407 DOI: 10.1186/s12931-024-02793-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2023] [Accepted: 03/28/2024] [Indexed: 04/20/2024] Open
Abstract
BACKGROUND Chronic obstructive pulmonary disease (COPD) is a frequently diagnosed yet treatable condition, provided it is identified early and managed effectively. This study aims to develop an advanced COPD diagnostic model by integrating deep learning and radiomics features. METHODS We utilized a dataset comprising CT images from 2,983 participants, of which 2,317 participants also provided epidemiological data through questionnaires. Deep learning features were extracted using a Variational Autoencoder, and radiomics features were obtained using the PyRadiomics package. Multi-Layer Perceptrons were used to construct models based on deep learning and radiomics features independently, as well as a fusion model integrating both. Subsequently, epidemiological questionnaire data were incorporated to establish a more comprehensive model. The diagnostic performance of standalone models, the fusion model and the comprehensive model was evaluated and compared using metrics including accuracy, precision, recall, F1-score, Brier score, receiver operating characteristic curves, and area under the curve (AUC). RESULTS The fusion model exhibited outstanding performance with an AUC of 0.952, surpassing the standalone models based solely on deep learning features (AUC = 0.844) or radiomics features (AUC = 0.944). Notably, the comprehensive model, incorporating deep learning features, radiomics features, and questionnaire variables demonstrated the highest diagnostic performance among all models, yielding an AUC of 0.971. CONCLUSION We developed and implemented a data fusion strategy to construct a state-of-the-art COPD diagnostic model integrating deep learning features, radiomics features, and questionnaire variables. Our data fusion strategy proved effective, and the model can be easily deployed in clinical settings. TRIAL REGISTRATION Not applicable. This study is NOT a clinical trial, it does not report the results of a health care intervention on human participants.
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Affiliation(s)
- Zecheng Zhu
- Center of Clinical Big Data and Analytics of The Second Affiliated Hospital and Department of Big Data in Health Science School of Public Health, Zhejiang University School of Medicine, Hangzhou, Zhejiang, China
| | - Shunjin Zhao
- Department of Respiratory and Critical Care Medicine, The Second Affiliated Hospital of Zhejiang University School of Medicine, Lanxi Branch (Lanxi People's Hospital), Hangzhou, Zhejiang, China
| | - Jiahui Li
- Center of Clinical Big Data and Analytics of The Second Affiliated Hospital and Department of Big Data in Health Science School of Public Health, Zhejiang University School of Medicine, Hangzhou, Zhejiang, China
| | - Yuting Wang
- Center of Clinical Big Data and Analytics of The Second Affiliated Hospital and Department of Big Data in Health Science School of Public Health, Zhejiang University School of Medicine, Hangzhou, Zhejiang, China
| | - Luopiao Xu
- Center of Clinical Big Data and Analytics of The Second Affiliated Hospital and Department of Big Data in Health Science School of Public Health, Zhejiang University School of Medicine, Hangzhou, Zhejiang, China
| | - Yubing Jia
- Center of Clinical Big Data and Analytics of The Second Affiliated Hospital and Department of Big Data in Health Science School of Public Health, Zhejiang University School of Medicine, Hangzhou, Zhejiang, China
| | - Zihan Li
- Center of Clinical Big Data and Analytics of The Second Affiliated Hospital and Department of Big Data in Health Science School of Public Health, Zhejiang University School of Medicine, Hangzhou, Zhejiang, China
| | - Wenyuan Li
- Center of Clinical Big Data and Analytics of The Second Affiliated Hospital and Department of Big Data in Health Science School of Public Health, Zhejiang University School of Medicine, Hangzhou, Zhejiang, China
| | - Gang Chen
- College of Computer Science and Technology, Zhejiang University, Hangzhou, Zhejiang, China.
| | - Xifeng Wu
- Center of Clinical Big Data and Analytics of The Second Affiliated Hospital and Department of Big Data in Health Science School of Public Health, Zhejiang University School of Medicine, Hangzhou, Zhejiang, China.
- National Institute for Data Science in Health and Medicine, Zhejiang University, Hangzhou, Zhejiang, China.
- The Key Laboratory of Intelligent Preventive Medicine of Zhejiang Province, Hangzhou, Zhejiang, China.
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Chen X, Wang X, Huang S, Luo W, Luo Z, Chen Z. Study on Predicting Clinical Stage of Patients with Bronchial Asthma Based on CT Radiomics. J Asthma Allergy 2024; 17:291-303. [PMID: 38562252 PMCID: PMC10982665 DOI: 10.2147/jaa.s448064] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2023] [Accepted: 03/21/2024] [Indexed: 04/04/2024] Open
Abstract
Objective To explore the value of a new model based on CT radiomics in predicting the staging of patients with bronchial asthma (BA). Methods Patients with BA from 2018 to 2021 were retrospectively analyzed and underwent plain chest CT before treatment. According to the guidelines for the prevention and treatment of BA (2016 edition), they were divided into two groups: acute attack and non-acute attack. The images were processed as follows: using Lung Kit software for image standardization and segmentation, using AK software for image feature extraction, and using R language for data analysis and model construction (training set: test set = 7: 3). The efficacy and clinical effects of the constructed model were evaluated with ROC curve, sensitivity, specificity, calibration curve and decision curve. Results A total of 112 patients with BA were enrolled, including 80 patients with acute attack (range: 2-86 years old, mean: 53.89±17.306 years old, males of 33) and 32 patients with non-acute attack (range: 4-79 years old, mean: 57.38±19.223 years old, males of 18). A total of 10 imaging features are finally retained and used to construct model using multi-factor logical regression method. In the training group, the AUC, sensitivity and specificity of the model was 0.881 (95% CI:0.808-0.955), 0.804 and 0.818, separately; while in the test group, it was 0.792 (95% CI:0.608-0.976), 0.792 and 0.80, respectively. Conclusion The model constructed based on radiomics has a good effect on predicting the staging of patients with BA, which provides a new method for clinical diagnosis of staging in BA patients.
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Affiliation(s)
- Xiaodong Chen
- Radiology Imaging Center, Affiliated Hospital of Guangdong Medical University, Zhanjiang City, People’s Republic of China
| | - Xiangyuan Wang
- Radiology Imaging Center, Affiliated Hospital of Guangdong Medical University, Zhanjiang City, People’s Republic of China
| | - Shangqing Huang
- Radiology Imaging Center, Affiliated Hospital of Guangdong Medical University, Zhanjiang City, People’s Republic of China
| | - Wenxuan Luo
- Radiology Imaging Center, Affiliated Hospital of Guangdong Medical University, Zhanjiang City, People’s Republic of China
| | - Zebin Luo
- Radiology Imaging Center, Affiliated Hospital of Guangdong Medical University, Zhanjiang City, People’s Republic of China
| | - Zipan Chen
- Health Management Center, Affiliated Hospital of Guangdong Medical University, Zhanjiang City, People’s Republic of China
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Zou X, Ren Y, Yang H, Zou M, Meng P, Zhang L, Gong M, Ding W, Han L, Zhang T. Screening and staging of chronic obstructive pulmonary disease with deep learning based on chest X-ray images and clinical parameters. BMC Pulm Med 2024; 24:153. [PMID: 38532368 DOI: 10.1186/s12890-024-02945-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2023] [Accepted: 03/01/2024] [Indexed: 03/28/2024] Open
Abstract
BACKGROUND Chronic obstructive pulmonary disease (COPD) is underdiagnosed with the current gold standard measure pulmonary function test (PFT). A more sensitive and simple option for early detection and severity evaluation of COPD could benefit practitioners and patients. METHODS In this multicenter retrospective study, frontal chest X-ray (CXR) images and related clinical information of 1055 participants were collected and processed. Different deep learning algorithms and transfer learning models were trained to classify COPD based on clinical data and CXR images from 666 subjects, and validated in internal test set based on 284 participants. External test including 105 participants was also performed to verify the generalization ability of the learning algorithms in diagnosing COPD. Meanwhile, the model was further used to evaluate disease severity of COPD by predicting different grads. RESULTS The Ensemble model showed an AUC of 0.969 in distinguishing COPD by simultaneously extracting fusion features of clinical parameters and CXR images in internal test, better than models that used clinical parameters (AUC = 0.963) or images (AUC = 0.946) only. For the external test set, the AUC slightly declined to 0.934 in predicting COPD based on clinical parameters and CXR images. When applying the Ensemble model to determine disease severity of COPD, the AUC reached 0.894 for three-classification and 0.852 for five-classification respectively. CONCLUSION The present study used DL algorithms to screen COPD and predict disease severity based on CXR imaging and clinical parameters. The models showed good performance and the approach might be an effective case-finding tool with low radiation dose for COPD diagnosis and staging.
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Affiliation(s)
- XiaoLing Zou
- Department of Pulmonary and Critical Care Medicine, The Third Affiliated Hospital of Sun Yat-sen University, Institute of Respiratory Diseases of Sun Yat-Sen University, 600 Tianhe Road, Guangzhou, 510630, China
| | - Yong Ren
- Scientific research project department, Guangdong Artificial Intelligence and Digital Economy Laboratory (Guangzhou), Pazhou Lab, Guangzhou, China
- Shensi lab, Shenzhen Institute for Advanced Study, UESTC, Shenzhen, China
| | - HaiLing Yang
- Department of Pulmonary and Critical Care Medicine, The Third Affiliated Hospital of Sun Yat-sen University, Institute of Respiratory Diseases of Sun Yat-Sen University, 600 Tianhe Road, Guangzhou, 510630, China
| | - ManMan Zou
- Department of Pulmonary and Critical Care Medicine, Dongguan People's Hospital, Dongguan, China
| | - Ping Meng
- Department of Pulmonary and Critical Care Medicine, the Six Affiliated Hospital of Guangzhou Medical University, Qingyuan People's Hospital, Qingyuan, China
| | - LiYi Zhang
- Department of Pulmonary and Critical Care Medicine, The Third Affiliated Hospital of Sun Yat-sen University, Institute of Respiratory Diseases of Sun Yat-Sen University, 600 Tianhe Road, Guangzhou, 510630, China
| | - MingJuan Gong
- Department of Internal Medicine, Huazhou Hospital of Traditional Chinese Medicine, Huazhou, China
| | - WenWen Ding
- Department of Pulmonary and Critical Care Medicine, The Third Affiliated Hospital of Sun Yat-sen University, Institute of Respiratory Diseases of Sun Yat-Sen University, 600 Tianhe Road, Guangzhou, 510630, China
| | - LanQing Han
- Center for artificial intelligence in medicine, Research Institute of Tsinghua, Pearl River Delta, Guangzhou, China.
| | - TianTuo Zhang
- Department of Pulmonary and Critical Care Medicine, The Third Affiliated Hospital of Sun Yat-sen University, Institute of Respiratory Diseases of Sun Yat-Sen University, 600 Tianhe Road, Guangzhou, 510630, China.
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Almeida SD, Norajitra T, Lüth CT, Wald T, Weru V, Nolden M, Jäger PF, von Stackelberg O, Heußel CP, Weinheimer O, Biederer J, Kauczor HU, Maier-Hein K. Capturing COPD heterogeneity: anomaly detection and parametric response mapping comparison for phenotyping on chest computed tomography. Front Med (Lausanne) 2024; 11:1360706. [PMID: 38495118 PMCID: PMC10941845 DOI: 10.3389/fmed.2024.1360706] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2023] [Accepted: 02/20/2024] [Indexed: 03/19/2024] Open
Abstract
Background Chronic obstructive pulmonary disease (COPD) poses a substantial global health burden, demanding advanced diagnostic tools for early detection and accurate phenotyping. In this line, this study seeks to enhance COPD characterization on chest computed tomography (CT) by comparing the spatial and quantitative relationships between traditional parametric response mapping (PRM) and a novel self-supervised anomaly detection approach, and to unveil potential additional insights into the dynamic transitional stages of COPD. Methods Non-contrast inspiratory and expiratory CT of 1,310 never-smoker and GOLD 0 individuals and COPD patients (GOLD 1-4) from the COPDGene dataset were retrospectively evaluated. A novel self-supervised anomaly detection approach was applied to quantify lung abnormalities associated with COPD, as regional deviations. These regional anomaly scores were qualitatively and quantitatively compared, per GOLD class, to PRM volumes (emphysema: PRMEmph, functional small-airway disease: PRMfSAD) and to a Principal Component Analysis (PCA) and Clustering, applied on the self-supervised latent space. Its relationships to pulmonary function tests (PFTs) were also evaluated. Results Initial t-Distributed Stochastic Neighbor Embedding (t-SNE) visualization of the self-supervised latent space highlighted distinct spatial patterns, revealing clear separations between regions with and without emphysema and air trapping. Four stable clusters were identified among this latent space by the PCA and Cluster Analysis. As the GOLD stage increased, PRMEmph, PRMfSAD, anomaly score, and Cluster 3 volumes exhibited escalating trends, contrasting with a decline in Cluster 2. The patient-wise anomaly scores significantly differed across GOLD stages (p < 0.01), except for never-smokers and GOLD 0 patients. In contrast, PRMEmph, PRMfSAD, and cluster classes showed fewer significant differences. Pearson correlation coefficients revealed moderate anomaly score correlations to PFTs (0.41-0.68), except for the functional residual capacity and smoking duration. The anomaly score was correlated with PRMEmph (r = 0.66, p < 0.01) and PRMfSAD (r = 0.61, p < 0.01). Anomaly scores significantly improved fitting of PRM-adjusted multivariate models for predicting clinical parameters (p < 0.001). Bland-Altman plots revealed that volume agreement between PRM-derived volumes and clusters was not constant across the range of measurements. Conclusion Our study highlights the synergistic utility of the anomaly detection approach and traditional PRM in capturing the nuanced heterogeneity of COPD. The observed disparities in spatial patterns, cluster dynamics, and correlations with PFTs underscore the distinct - yet complementary - strengths of these methods. Integrating anomaly detection and PRM offers a promising avenue for understanding of COPD pathophysiology, potentially informing more tailored diagnostic and intervention approaches to improve patient outcomes.
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Affiliation(s)
- Silvia D. Almeida
- Division of Medical Image Computing, German Cancer Research Center (DKFZ), Heidelberg, Germany
- Translational Lung Research Center Heidelberg (TLRC), German Center for Lung Research (DZL), Heidelberg, Germany
- Medical Faculty, Heidelberg University, Heidelberg, Germany
- National Center for Tumor Diseases (NCT), NCT Heidelberg, A Partnership Between DKFZ and Heidelberg University Medical Center, Heidelberg, Germany
| | - Tobias Norajitra
- Division of Medical Image Computing, German Cancer Research Center (DKFZ), Heidelberg, Germany
- Translational Lung Research Center Heidelberg (TLRC), German Center for Lung Research (DZL), Heidelberg, Germany
| | - Carsten T. Lüth
- Interactive Machine Learning Group (IML), German Cancer Research Center (DKFZ), Heidelberg, Germany
- Helmholtz Imaging, German Cancer Research Center (DKFZ), Heidelberg, Germany
| | - Tassilo Wald
- Division of Medical Image Computing, German Cancer Research Center (DKFZ), Heidelberg, Germany
- Helmholtz Imaging, German Cancer Research Center (DKFZ), Heidelberg, Germany
| | - Vivienn Weru
- Division of Biostatistics, German Cancer Research Center (DKFZ), Heidelberg, Germany
| | - Marco Nolden
- Division of Medical Image Computing, German Cancer Research Center (DKFZ), Heidelberg, Germany
- Pattern Analysis and Learning Group, Radiation Oncology, Heidelberg University Hospital, Heidelberg, Germany
| | - Paul F. Jäger
- Interactive Machine Learning Group (IML), German Cancer Research Center (DKFZ), Heidelberg, Germany
- Helmholtz Imaging, German Cancer Research Center (DKFZ), Heidelberg, Germany
| | - Oyunbileg von Stackelberg
- Translational Lung Research Center Heidelberg (TLRC), German Center for Lung Research (DZL), Heidelberg, Germany
- Diagnostic and Interventional Radiology, Heidelberg University Hospital, Heidelberg, Germany
| | - Claus Peter Heußel
- Translational Lung Research Center Heidelberg (TLRC), German Center for Lung Research (DZL), Heidelberg, Germany
- Diagnostic and Interventional Radiology, Heidelberg University Hospital, Heidelberg, Germany
- Diagnostic and Interventional Radiology with Nuclear Medicine, Thoraxklinik at University Hospital, Heidelberg, Germany
| | - Oliver Weinheimer
- Translational Lung Research Center Heidelberg (TLRC), German Center for Lung Research (DZL), Heidelberg, Germany
- Diagnostic and Interventional Radiology, Heidelberg University Hospital, Heidelberg, Germany
| | - Jürgen Biederer
- Translational Lung Research Center Heidelberg (TLRC), German Center for Lung Research (DZL), Heidelberg, Germany
- Diagnostic and Interventional Radiology, Heidelberg University Hospital, Heidelberg, Germany
- Faculty of Medicine, University of Latvia, Riga, Latvia
- Faculty of Medicine, Christian-Albrechts-Universität zu Kiel, Kiel, Germany
| | - Hans-Ulrich Kauczor
- Translational Lung Research Center Heidelberg (TLRC), German Center for Lung Research (DZL), Heidelberg, Germany
- Diagnostic and Interventional Radiology, Heidelberg University Hospital, Heidelberg, Germany
| | - Klaus Maier-Hein
- Division of Medical Image Computing, German Cancer Research Center (DKFZ), Heidelberg, Germany
- Translational Lung Research Center Heidelberg (TLRC), German Center for Lung Research (DZL), Heidelberg, Germany
- National Center for Tumor Diseases (NCT), NCT Heidelberg, A Partnership Between DKFZ and Heidelberg University Medical Center, Heidelberg, Germany
- Helmholtz Imaging, German Cancer Research Center (DKFZ), Heidelberg, Germany
- Pattern Analysis and Learning Group, Radiation Oncology, Heidelberg University Hospital, Heidelberg, Germany
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Cheng W, Zhou A, Song Q, Zeng Y, Lin L, Liu C, Shi J, Zhou Z, Peng Y, Li J, Deng D, Yang M, Yang L, Chen Y, Cai S, Chen P. Development and validation of a nomogram model for mortality prediction in stable chronic obstructive pulmonary disease patients: A prospective observational study in the RealDTC cohort. J Glob Health 2024; 14:04049. [PMID: 38385363 PMCID: PMC10905054 DOI: 10.7189/jogh.14.04049] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/23/2024] Open
Abstract
Background Chronic obstructive pulmonary disease (COPD) is the third leading cause of death worldwide. There is no nomogram model available for mortality prediction of stable COPD. We intended to develop and validate a nomogram model to predict mortality risk in stable COPD patients for personalised prognostic assessment. Methods A prospective observational study was made of COPD outpatients registered in the RealDTC study between December 2016 and December 2019. Patients were randomly assigned to the training cohort and validation cohort in a ratio of 7:3. We used Lasso regression to screen predicted variables. Further, we evaluated the prognostic performance using the area under the time-dependent receiver operating characteristic curve (AUC) and calibration curve. We used the AUC, concordance index, and decision curve analysis to evaluate the net benefits and utility of the nomogram compared with three earlier prediction models. Results Of 2499 patients, the median follow-up was 38 months. The characteristics of the patients between the training cohort (n = 1743) and the validation cohort (n = 756) were similar. ABEODS nomogram model, combining age, body mass index, educational level, airflow obstruction, dyspnoea, and severe exacerbation in the first year, was constructed to predict mortality in stable COPD patients. In the integrative analysis of training and validation cohorts of the nomogram model, the three-year mortality prediction achieved AUC = 0.84; 95% confidence interval (CI) = 0.81, 0.88 and AUC = 0.80; 95% CI = 0.74, 0.86, respectively. The ABEODS nomogram model preserved excellent calibration in both the training cohort and validation cohort. The time-dependent AUC, concordance index, and net benefit of the nomogram model were higher than those of BODEx, updated ADO, and DOSE, respectively. Conclusions We developed and validated a prognostic nomogram model that accurately predicts mortality across the COPD severity spectrum. The proposed ABEODS nomogram model performed better than earlier models, including BODEx, updated ADO, and DOSE in Chinese patients with COPD. Registration ChiCTR-POC-17010431.
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Affiliation(s)
- Wei Cheng
- Department of Pulmonary and Critical Care Medicine, Second Xiangya Hospital; Research Unit of Respiratory Disease; Diagnosis and Treatment Centre of Respiratory Disease, Central South University, Changsha, Hunan, China
- Clinical Medical Research Centre for Respiratory and Critical Care Medicine in Hunan Province, China
| | - Aiyuan Zhou
- Department of Pulmonary and Critical Care Medicine, Xiangya Hospital, Central South University, Changsha, Hunan, China
| | - Qing Song
- Department of Pulmonary and Critical Care Medicine, Second Xiangya Hospital; Research Unit of Respiratory Disease; Diagnosis and Treatment Centre of Respiratory Disease, Central South University, Changsha, Hunan, China
- Clinical Medical Research Centre for Respiratory and Critical Care Medicine in Hunan Province, China
| | - Yuqin Zeng
- Department of Pulmonary and Critical Care Medicine, Second Xiangya Hospital; Research Unit of Respiratory Disease; Diagnosis and Treatment Centre of Respiratory Disease, Central South University, Changsha, Hunan, China
- Clinical Medical Research Centre for Respiratory and Critical Care Medicine in Hunan Province, China
| | - Ling Lin
- Department of Pulmonary and Critical Care Medicine, Second Xiangya Hospital; Research Unit of Respiratory Disease; Diagnosis and Treatment Centre of Respiratory Disease, Central South University, Changsha, Hunan, China
- Clinical Medical Research Centre for Respiratory and Critical Care Medicine in Hunan Province, China
| | - Cong Liu
- Department of Pulmonary and Critical Care Medicine, Second Xiangya Hospital; Research Unit of Respiratory Disease; Diagnosis and Treatment Centre of Respiratory Disease, Central South University, Changsha, Hunan, China
- Clinical Medical Research Centre for Respiratory and Critical Care Medicine in Hunan Province, China
| | - Jingcheng Shi
- Department of Epidemiology and Health Statistics, Xiangya School of Public Health, Central South University, Changsha, China
| | - Zijing Zhou
- Department of Pulmonary and Critical Care Medicine, Second Xiangya Hospital; Research Unit of Respiratory Disease; Diagnosis and Treatment Centre of Respiratory Disease, Central South University, Changsha, Hunan, China
- Clinical Medical Research Centre for Respiratory and Critical Care Medicine in Hunan Province, China
| | - Yating Peng
- Department of Pulmonary and Critical Care Medicine, Second Xiangya Hospital; Research Unit of Respiratory Disease; Diagnosis and Treatment Centre of Respiratory Disease, Central South University, Changsha, Hunan, China
- Clinical Medical Research Centre for Respiratory and Critical Care Medicine in Hunan Province, China
| | - Jing Li
- Department of Pulmonary and Critical Care Medicine, Second Xiangya Hospital; Research Unit of Respiratory Disease; Diagnosis and Treatment Centre of Respiratory Disease, Central South University, Changsha, Hunan, China
- Clinical Medical Research Centre for Respiratory and Critical Care Medicine in Hunan Province, China
| | - DingDing Deng
- Department of Respiratory Medicine, The First Affiliated People's Hospital, Shaoyang College, Shaoyang, Hunan, China
| | - Min Yang
- Department of Pulmonary and Critical Care Medicine, Second Xiangya Hospital; Research Unit of Respiratory Disease; Diagnosis and Treatment Centre of Respiratory Disease, Central South University, Changsha, Hunan, China
- Clinical Medical Research Centre for Respiratory and Critical Care Medicine in Hunan Province, China
| | - Lizhen Yang
- Department of Pulmonary and Critical Care Medicine, Second Xiangya Hospital; Research Unit of Respiratory Disease; Diagnosis and Treatment Centre of Respiratory Disease, Central South University, Changsha, Hunan, China
- Clinical Medical Research Centre for Respiratory and Critical Care Medicine in Hunan Province, China
| | - Yan Chen
- Department of Pulmonary and Critical Care Medicine, Second Xiangya Hospital; Research Unit of Respiratory Disease; Diagnosis and Treatment Centre of Respiratory Disease, Central South University, Changsha, Hunan, China
- Clinical Medical Research Centre for Respiratory and Critical Care Medicine in Hunan Province, China
| | - Shan Cai
- Department of Pulmonary and Critical Care Medicine, Second Xiangya Hospital; Research Unit of Respiratory Disease; Diagnosis and Treatment Centre of Respiratory Disease, Central South University, Changsha, Hunan, China
- Clinical Medical Research Centre for Respiratory and Critical Care Medicine in Hunan Province, China
| | - Ping Chen
- Department of Pulmonary and Critical Care Medicine, Second Xiangya Hospital; Research Unit of Respiratory Disease; Diagnosis and Treatment Centre of Respiratory Disease, Central South University, Changsha, Hunan, China
- Clinical Medical Research Centre for Respiratory and Critical Care Medicine in Hunan Province, China
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Grenier PA, Brun AL, Mellot F. [The contribution of artificial intelligence (AI) subsequent to the processing of thoracic imaging]. Rev Mal Respir 2024; 41:110-126. [PMID: 38129269 DOI: 10.1016/j.rmr.2023.12.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2023] [Accepted: 11/27/2023] [Indexed: 12/23/2023]
Abstract
The contribution of artificial intelligence (AI) to medical imaging is currently the object of widespread experimentation. The development of deep learning (DL) methods, particularly convolution neural networks (CNNs), has led to performance gains often superior to those achieved by conventional methods such as machine learning. Radiomics is an approach aimed at extracting quantitative data not accessible to the human eye from images expressing a disease. The data subsequently feed machine learning models and produce diagnostic or prognostic probabilities. As for the multiple applications of AI methods in thoracic imaging, they are undergoing evaluation. Chest radiography is a practically ideal field for the development of DL algorithms able to automatically interpret X-rays. Current algorithms can detect up to 14 different abnormalities present either in isolation or in combination. Chest CT is another area offering numerous AI applications. Various algorithms have been specifically formed and validated for the detection and characterization of pulmonary nodules and pulmonary embolism, as well as segmentation and quantitative analysis of the extent of diffuse lung diseases (emphysema, infectious pneumonias, interstitial lung disease). In addition, the analysis of medical images can be associated with clinical, biological, and functional data (multi-omics analysis), the objective being to construct predictive approaches regarding disease prognosis and response to treatment.
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Affiliation(s)
- P A Grenier
- Délégation à la recherche clinique et l'innovation, hôpital Foch, Suresnes, France.
| | - A L Brun
- Service de radiologie, hôpital Foch, Suresnes, France
| | - F Mellot
- Service de radiologie, hôpital Foch, Suresnes, France
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Yu K, Sun L, Chen J, Reynolds M, Chaudhary T, Batmanghelich K. DrasCLR: A self-supervised framework of learning disease-related and anatomy-specific representation for 3D lung CT images. Med Image Anal 2024; 92:103062. [PMID: 38086236 PMCID: PMC10872608 DOI: 10.1016/j.media.2023.103062] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2023] [Revised: 08/24/2023] [Accepted: 12/05/2023] [Indexed: 01/12/2024]
Abstract
Large-scale volumetric medical images with annotation are rare, costly, and time prohibitive to acquire. Self-supervised learning (SSL) offers a promising pre-training and feature extraction solution for many downstream tasks, as it only uses unlabeled data. Recently, SSL methods based on instance discrimination have gained popularity in the medical imaging domain. However, SSL pre-trained encoders may use many clues in the image to discriminate an instance that are not necessarily disease-related. Moreover, pathological patterns are often subtle and heterogeneous, requiring the ability of the desired method to represent anatomy-specific features that are sensitive to abnormal changes in different body parts. In this work, we present a novel SSL framework, named DrasCLR, for 3D lung CT images to overcome these challenges. We propose two domain-specific contrastive learning strategies: one aims to capture subtle disease patterns inside a local anatomical region, and the other aims to represent severe disease patterns that span larger regions. We formulate the encoder using conditional hyper-parameterized network, in which the parameters are dependant on the anatomical location, to extract anatomically sensitive features. Extensive experiments on large-scale datasets of lung CT scans show that our method improves the performance of many downstream prediction and segmentation tasks. The patient-level representation improves the performance of the patient survival prediction task. We show how our method can detect emphysema subtypes via dense prediction. We demonstrate that fine-tuning the pre-trained model can significantly reduce annotation efforts without sacrificing emphysema detection accuracy. Our ablation study highlights the importance of incorporating anatomical context into the SSL framework. Our codes are available at https://github.com/batmanlab/DrasCLR.
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Affiliation(s)
- Ke Yu
- School of Computing and Information, University of Pittsburgh, Pittsburgh, USA.
| | - Li Sun
- Department of Electrical and Computer Engineering, Boston University, Boston, USA
| | - Junxiang Chen
- Department of Biomedical Informatics, University of Pittsburgh, Pittsburgh, USA
| | - Maxwell Reynolds
- Department of Biomedical Informatics, University of Pittsburgh, Pittsburgh, USA
| | - Tigmanshu Chaudhary
- Department of Biomedical Informatics, University of Pittsburgh, Pittsburgh, USA
| | - Kayhan Batmanghelich
- Department of Electrical and Computer Engineering, Boston University, Boston, USA
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Robertson NM, Centner CS, Siddharthan T. Integrating Artificial Intelligence in the Diagnosis of COPD Globally: A Way Forward. CHRONIC OBSTRUCTIVE PULMONARY DISEASES (MIAMI, FLA.) 2024; 11:114-120. [PMID: 37828644 PMCID: PMC10913925 DOI: 10.15326/jcopdf.2023.0449] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 09/22/2023] [Indexed: 10/14/2023]
Abstract
The advancement of artificial intelligence (AI) capabilities has paved the way for a new frontier in medicine, which has the capability to reduce the burden of COPD globally. AI may reduce health care-associated expenses while potentially increasing diagnostic specificity, improving access to early COPD diagnosis, and monitoring COPD progression and subsequent disease management. We evaluated how AI can be integrated into COPD diagnosing globally and leveraged in resource-constrained settings.AI has been explored in diagnosing and phenotyping COPD through auscultation, pulmonary function testing, and imaging. Clinician collaboration with AI has increased the performance of COPD diagnosing and highlights the important role of clinical decision-making in AI integration. Likewise, AI analysis of computer tomography (CT) imaging in large population-based cohorts has increased diagnostic ability, severity classification, and prediction of outcomes related to COPD. Moreover, a multimodality approach with CT imaging, demographic data, and spirometry has been shown to improve machine learning predictions of the progression to COPD compared to each modality alone. Prior research has primarily been conducted in high-income country settings, which may lack generalization to a global population. AI is a World Health Organization priority with the potential to reduce health care barriers in low- and middle-income countries. We recommend a collaboration between clinicians and an AI-supported multimodal approach to COPD diagnosis as a step towards achieving this goal. We believe the interplay of CT imaging, spirometry, biomarkers, and sputum analysis may provide unique insights across settings that could provide a basis for clinical decision-making that includes early intervention for those diagnosed with COPD.
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Affiliation(s)
- Nicole M. Robertson
- Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, United States
| | - Connor S. Centner
- University of Louisville School of Medicine, Louisville, Kentucky, United States
- Department of Bioengineering, School of Engineering, University of Louisville, Louisville, Kentucky, United States
| | - Trishul Siddharthan
- Division of Pulmonary, Critical Care, and Sleep Medicine, University of Miami, Miami, Florida, United States
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Rojas-Quintero J, Ochsner SA, New F, Divakar P, Yang CX, Wu TD, Robinson J, Chandrashekar DS, Banovich NE, Rosas IO, Sauler M, Kheradmand F, Gaggar A, Margaroli C, San Jose Estepar R, McKenna NJ, Polverino F. Spatial Transcriptomics Resolve an Emphysema-Specific Lymphoid Follicle B Cell Signature in Chronic Obstructive Pulmonary Disease. Am J Respir Crit Care Med 2024; 209:48-58. [PMID: 37934672 PMCID: PMC10870877 DOI: 10.1164/rccm.202303-0507le] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2023] [Accepted: 10/15/2023] [Indexed: 11/09/2023] Open
Abstract
Rationale: Within chronic obstructive pulmonary disease (COPD), emphysema is characterized by a significant yet partially understood B cell immune component. Objectives: To characterize the transcriptomic signatures from lymphoid follicles (LFs) in ever-smokers without COPD and patients with COPD with varying degrees of emphysema. Methods: Lung sections from 40 patients with COPD and ever-smokers were used for LF proteomic and transcriptomic spatial profiling. Formalin- and O.C.T.-fixed lung samples obtained from biopsies or lung explants were assessed for LF presence. Emphysema measurements were obtained from clinical chest computed tomographic scans. High-confidence transcriptional target intersection analyses were conducted to resolve emphysema-induced transcriptional networks. Measurements and Main Results: Overall, 115 LFs from ever-smokers and Global Initiative for Chronic Obstructive Lung Disease (GOLD) 1-2 and GOLD 3-4 patients were analyzed. No LFs were found in never-smokers. Differential gene expression analysis revealed significantly increased expression of LF assembly and B cell marker genes in subjects with severe emphysema. High-confidence transcriptional analysis revealed activation of an abnormal B cell activity signature in LFs (q-value = 2.56E-111). LFs from patients with GOLD 1-2 COPD with emphysema showed significantly increased expression of genes associated with antigen presentation, inflammation, and B cell activation and proliferation. LFs from patients with GOLD 1-2 COPD without emphysema showed an antiinflammatory profile. The extent of centrilobular emphysema was significantly associated with genes involved in B cell maturation and antibody production. Protein-RNA network analysis showed that LFs in emphysema have a unique signature skewed toward chronic B cell activation. Conclusions: An off-targeted B cell activation within LFs is associated with autoimmune-mediated emphysema pathogenesis.
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Affiliation(s)
| | - Scott A. Ochsner
- Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas
| | - Felicia New
- Spatial Data Analysis Services, Nanostring Biotechnologies, Seattle, Washington
| | - Prajan Divakar
- Spatial Data Analysis Services, Nanostring Biotechnologies, Seattle, Washington
| | - Chen Xi Yang
- Center for Heart Lung Innovation, University of British Columbia, Vancouver, British Columbia, Canada
| | | | - Jerid Robinson
- Field Application Scientists, Nanostring Biotechnologies, Seattle, Washington
| | | | | | | | - Maor Sauler
- Pulmonary and Critical Care Medicine, Yale University, New Haven, Connecticut
| | - Farrah Kheradmand
- Pulmonary Division, Department of Medicine, and
- Michael E. DeBakey Veterans Affairs Medical Center, Houston, Texas
| | - Amit Gaggar
- Pulmonary and Critical Care Medicine, and
- Birmingham Veterans Affairs Medical Center, Birmingham, Alabama; and
| | - Camilla Margaroli
- Pathology – Division of Cellular and Molecular Pathology, University of Alabama at Birmingham, Birmingham, Alabama
| | - Raul San Jose Estepar
- Applied Chest Imaging Laboratory, Department of Radiology, Brigham and Women’s Hospital, Harvard Medical School, Boston, Massachusetts
| | - Neil J. McKenna
- Spatial Data Analysis Services, Nanostring Biotechnologies, Seattle, Washington
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Lidén M, Spahr A, Hjelmgren O, Bendazzoli S, Sundh J, Sköld M, Bergström G, Wang C, Thunberg P. Machine learning slice-wise whole-lung CT emphysema score correlates with airway obstruction. Eur Radiol 2024; 34:39-49. [PMID: 37552259 PMCID: PMC10791709 DOI: 10.1007/s00330-023-09985-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2023] [Revised: 04/18/2023] [Accepted: 05/29/2023] [Indexed: 08/09/2023]
Abstract
OBJECTIVES Quantitative CT imaging is an important emphysema biomarker, especially in smoking cohorts, but does not always correlate to radiologists' visual CT assessments. The objectives were to develop and validate a neural network-based slice-wise whole-lung emphysema score (SWES) for chest CT, to validate SWES on unseen CT data, and to compare SWES with a conventional quantitative CT method. MATERIALS AND METHODS Separate cohorts were used for algorithm development and validation. For validation, thin-slice CT stacks from 474 participants in the prospective cross-sectional Swedish CArdioPulmonary bioImage Study (SCAPIS) were included, 395 randomly selected and 79 from an emphysema cohort. Spirometry (FEV1/FVC) and radiologists' visual emphysema scores (sum-visual) obtained at inclusion in SCAPIS were used as reference tests. SWES was compared with a commercially available quantitative emphysema scoring method (LAV950) using Pearson's correlation coefficients and receiver operating characteristics (ROC) analysis. RESULTS SWES correlated more strongly with the visual scores than LAV950 (r = 0.78 vs. r = 0.41, p < 0.001). The area under the ROC curve for the prediction of airway obstruction was larger for SWES than for LAV950 (0.76 vs. 0.61, p = 0.007). SWES correlated more strongly with FEV1/FVC than either LAV950 or sum-visual in the full cohort (r = - 0.69 vs. r = - 0.49/r = - 0.64, p < 0.001/p = 0.007), in the emphysema cohort (r = - 0.77 vs. r = - 0.69/r = - 0.65, p = 0.03/p = 0.002), and in the random sample (r = - 0.39 vs. r = - 0.26/r = - 0.25, p = 0.001/p = 0.007). CONCLUSION The slice-wise whole-lung emphysema score (SWES) correlates better than LAV950 with radiologists' visual emphysema scores and correlates better with airway obstruction than do LAV950 and radiologists' visual scores. CLINICAL RELEVANCE STATEMENT The slice-wise whole-lung emphysema score provides quantitative emphysema information for CT imaging that avoids the disadvantages of threshold-based scores and is correlated more strongly with reference tests than LAV950 and reader visual scores. KEY POINTS • A slice-wise whole-lung emphysema score (SWES) was developed to quantify emphysema in chest CT images. • SWES identified visual emphysema and spirometric airflow limitation significantly better than threshold-based score (LAV950). • SWES improved emphysema quantification in CT images, which is especially useful in large-scale research.
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Affiliation(s)
- Mats Lidén
- Department of Radiology and Medical Physics, Faculty of Medicine and Health, Örebro University, 701 82, Örebro, Sweden.
| | - Antoine Spahr
- Department of Biomedical Engineering and Health Systems, KTH Royal Institute of Technology School of Technology and Health, Stockholm, Sweden
| | - Ola Hjelmgren
- Department of Molecular and Clinical Medicine, Institute of Medicine, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden
- Department of Clinical Physiology, Sahlgrenska University Hospital, Region Västra Götaland, Gothenburg, Sweden
| | - Simone Bendazzoli
- Department of Biomedical Engineering and Health Systems, KTH Royal Institute of Technology School of Technology and Health, Stockholm, Sweden
- Department of Clinical Science, Intervention and Technology - CLINTEC, Karolinska Institutet, Stockholm, Sweden
| | - Josefin Sundh
- Department of Respiratory Medicine, Faculty of Medicine and Health, Örebro University, Örebro, Sweden
| | - Magnus Sköld
- Department of Medicine Solna, Karolinska Institutet, Stockholm, Sweden
- Department of Respiratory Medicine and Allergy, Karolinska University Hospital, Stockholm, Sweden
| | - Göran Bergström
- Department of Molecular and Clinical Medicine, Institute of Medicine, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden
- Department of Clinical Physiology, Sahlgrenska University Hospital, Region Västra Götaland, Gothenburg, Sweden
| | - Chunliang Wang
- Department of Biomedical Engineering and Health Systems, KTH Royal Institute of Technology School of Technology and Health, Stockholm, Sweden
| | - Per Thunberg
- Department of Radiology and Medical Physics, Faculty of Medicine and Health, Örebro University, 701 82, Örebro, Sweden
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Chen C, Tang F, Herth FJF, Zuo Y, Ren J, Zhang S, Jian W, Tang C, Li S. Building and validating an artificial intelligence model to identify tracheobronchopathia osteochondroplastica by using bronchoscopic images. Ther Adv Respir Dis 2024; 18:17534666241253694. [PMID: 38803144 PMCID: PMC11131396 DOI: 10.1177/17534666241253694] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2023] [Accepted: 04/22/2024] [Indexed: 05/29/2024] Open
Abstract
BACKGROUND Given the rarity of tracheobronchopathia osteochondroplastica (TO), many young doctors in primary hospitals are unable to identify TO based on bronchoscopy findings. OBJECTIVES To build an artificial intelligence (AI) model for differentiating TO from other multinodular airway diseases by using bronchoscopic images. DESIGN We designed the study by comparing the imaging data of patients undergoing bronchoscopy from January 2010 to October 2022 by using EfficientNet. Bronchoscopic images of 21 patients with TO at Anhui Chest Hospital from October 2019 to October 2022 were collected for external validation. METHODS Bronchoscopic images of patients with multinodular airway lesions (including TO, amyloidosis, tumors, and inflammation) and without airway lesions in the First Affiliated Hospital of Guangzhou Medical University were collected. The images were randomized (4:1) into training and validation groups based on different diseases and utilized for deep learning by convolutional neural networks (CNNs). RESULTS We enrolled 201 patients with multinodular airway disease (38, 15, 75, and 73 patients with TO, amyloidosis, tumors, and inflammation, respectively) and 213 without any airway lesions. To find multinodular lesion images for deep learning, we utilized 2183 bronchoscopic images of multinodular lesions (including TO, amyloidosis, tumor, and inflammation) and compared them with images without any airway lesions (1733). The accuracy of multinodular lesion identification was 98.9%. Further, the accuracy of TO detection based on the bronchoscopic images of multinodular lesions was 89.2%. Regarding external validation (using images from 21 patients with TO), all patients could be diagnosed with TO; the accuracy was 89.8%. CONCLUSION We built an AI model that could differentiate TO from other multinodular airway diseases (mainly amyloidosis, tumors, and inflammation) by using bronchoscopic images. The model could help young physicians identify this rare airway disease.
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Affiliation(s)
- Chongxiang Chen
- State Key Laboratory of Respiratory Disease, National Clinical Research Center for Respiratory Disease, Guangzhou Institute of Respiratory Health, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, Guangdong Province, China
| | - Fei Tang
- Department of Interventional Pulmonary and Endoscopic Diagnosis and Treatment Center, Anhui Chest Hospital, Hefei, Anhui Province, China
| | - Felix J. F. Herth
- Department of Pneumology and Critical Care Medicine and Translational Research Unit, Thoraxklinik, University Hospital Heidelberg, Heidelberg, Germany
| | - Yingnan Zuo
- Guangzhou Tianpeng Computer Technology Co., Ltd. Guangzhou, Guangdong, China
| | - Jiangtao Ren
- School of Computer Science and Engineering, Guangdong Province Key Lab of Computational Science, Sun Yat-sen University, Guangzhou, Guangdong, China
| | - Shuaiqi Zhang
- School of Public Health, Sun Yat-sen University, Guangzhou, China
| | - Wenhua Jian
- State Key Laboratory of Respiratory Disease, National Clinical Research Center for Respiratory Disease, Guangzhou Institute of Respiratory Health, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, Guangdong Province, China
| | - Chunli Tang
- State Key Laboratory of Respiratory Disease, National Clinical Research Center for Respiratory Disease, Guangzhou Institute of Respiratory Health, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, Guangdong Province 510000, China
| | - Shiyue Li
- State Key Laboratory of Respiratory Disease, National Clinical Research Center for Respiratory Disease, Guangzhou Institute of Respiratory Health, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, Guangdong Province 510000, China
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Smith LA, Oakden-Rayner L, Bird A, Zeng M, To MS, Mukherjee S, Palmer LJ. Machine learning and deep learning predictive models for long-term prognosis in patients with chronic obstructive pulmonary disease: a systematic review and meta-analysis. Lancet Digit Health 2023; 5:e872-e881. [PMID: 38000872 DOI: 10.1016/s2589-7500(23)00177-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2023] [Revised: 06/26/2023] [Accepted: 08/29/2023] [Indexed: 11/26/2023]
Abstract
BACKGROUND Machine learning and deep learning models have been increasingly used to predict long-term disease progression in patients with chronic obstructive pulmonary disease (COPD). We aimed to summarise the performance of such prognostic models for COPD, compare their relative performances, and identify key research gaps. METHODS We conducted a systematic review and meta-analysis to compare the performance of machine learning and deep learning prognostic models and identify pathways for future research. We searched PubMed, Embase, the Cochrane Library, ProQuest, Scopus, and Web of Science from database inception to April 6, 2023, for studies in English using machine learning or deep learning to predict patient outcomes at least 6 months after initial clinical presentation in those with COPD. We included studies comprising human adults aged 18-90 years and allowed for any input modalities. We reported area under the receiver operator characteristic curve (AUC) with 95% CI for predictions of mortality, exacerbation, and decline in forced expiratory volume in 1 s (FEV1). We reported the degree of interstudy heterogeneity using Cochran's Q test (significant heterogeneity was defined as p≤0·10 or I2>50%). Reporting quality was assessed using the TRIPOD checklist and a risk-of-bias assessment was done using the PROBAST checklist. This study was registered with PROSPERO (CRD42022323052). FINDINGS We identified 3620 studies in the initial search. 18 studies were eligible, and, of these, 12 used conventional machine learning and six used deep learning models. Seven models analysed exacerbation risk, with only six reporting AUC and 95% CI on internal validation datasets (pooled AUC 0·77 [95% CI 0·69-0·85]) and there was significant heterogeneity (I2 97%, p<0·0001). 11 models analysed mortality risk, with only six reporting AUC and 95% CI on internal validation datasets (pooled AUC 0·77 [95% CI 0·74-0·80]) with significant degrees of heterogeneity (I2 60%, p=0·027). Two studies assessed decline in lung function and were unable to be pooled. Machine learning and deep learning models did not show significant improvement over pre-existing disease severity scores in predicting exacerbations (p=0·24). Three studies directly compared machine learning models against pre-existing severity scores for predicting mortality and pooled performance did not differ (p=0·57). Of the five studies that performed external validation, performance was worse than or equal to regression models. Incorrect handling of missing data, not reporting model uncertainty, and use of datasets that were too small relative to the number of predictive features included provided the largest risks of bias. INTERPRETATION There is limited evidence that conventional machine learning and deep learning prognostic models demonstrate superior performance to pre-existing disease severity scores. More rigorous adherence to reporting guidelines would reduce the risk of bias in future studies and aid study reproducibility. FUNDING None.
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Affiliation(s)
- Luke A Smith
- Australian Institute for Machine Learning, University of Adelaide, Adelaide, SA, Australia; School of Public Health, University of Adelaide, Adelaide, SA, Australia.
| | - Lauren Oakden-Rayner
- Australian Institute for Machine Learning, University of Adelaide, Adelaide, SA, Australia; School of Public Health, University of Adelaide, Adelaide, SA, Australia
| | - Alix Bird
- Australian Institute for Machine Learning, University of Adelaide, Adelaide, SA, Australia; School of Public Health, University of Adelaide, Adelaide, SA, Australia
| | - Minyan Zeng
- Australian Institute for Machine Learning, University of Adelaide, Adelaide, SA, Australia; School of Public Health, University of Adelaide, Adelaide, SA, Australia
| | - Minh-Son To
- Health Data and Clinical Trials, Flinders University, Bedford Park, SA, Australia; South Australia Medical Imaging, Flinders Medical Centre, Bedford Park, SA, Australia
| | - Sutapa Mukherjee
- Department of Respiratory and Sleep Medicine, Southern Adelaide Local Health Network (SALHN), Bedford Park, SA, Australia; Adelaide Institute for Sleep Health/Flinders Health and Medical Research Institute, College of Medicine and Public Health, Flinders University, Bedford Park, SA, Australia
| | - Lyle J Palmer
- Australian Institute for Machine Learning, University of Adelaide, Adelaide, SA, Australia; School of Public Health, University of Adelaide, Adelaide, SA, Australia
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Antão J, de Mast J, Marques A, Franssen FME, Spruit MA, Deng Q. Demystification of artificial intelligence for respiratory clinicians managing patients with obstructive lung diseases. Expert Rev Respir Med 2023; 17:1207-1219. [PMID: 38270524 DOI: 10.1080/17476348.2024.2302940] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2023] [Accepted: 01/04/2024] [Indexed: 01/26/2024]
Abstract
INTRODUCTION Asthma and chronic obstructive pulmonary disease (COPD) are leading causes of morbidity and mortality worldwide. Despite all available diagnostics and treatments, these conditions pose a significant individual, economic and social burden. Artificial intelligence (AI) promises to support clinical decision-making processes by optimizing diagnosis and treatment strategies of these heterogeneous and complex chronic respiratory diseases. Its capabilities extend to predicting exacerbation risk, disease progression and mortality, providing healthcare professionals with valuable insights for more effective care. Nevertheless, the knowledge gap between respiratory clinicians and data scientists remains a major constraint for wide application of AI and may hinder future progress. This narrative review aims to bridge this gap and encourage AI deployment by explaining its methodology and added value in asthma and COPD diagnosis and treatment. AREAS COVERED This review offers an overview of the fundamental concepts of AI and machine learning, outlines the key steps in building a model, provides examples of their applicability in asthma and COPD care, and discusses barriers to their implementation. EXPERT OPINION Machine learning can advance our understanding of asthma and COPD, enabling personalized therapy and better outcomes. Further research and validation are needed to ensure the development of clinically meaningful and generalizable models.
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Affiliation(s)
- Joana Antão
- Lab3R - Respiratory Research and Rehabilitation Laboratory, School of Health Sciences, University of Aveiro (ESSUA), Aveiro, Portugal
- iBiMED - Institute of Biomedicine, Department of Medical Sciences, University of Aveiro, Aveiro, Portugal
- Department of Research and Development, Ciro, Horn, The Netherlands
- Department of Respiratory Medicine, Maastricht University Medical Centre, NUTRIM School of Nutrition and Translational Research in Metabolism, Faculty of Health, Medicine and Life Sciences, Maastricht University, Maastricht, the Netherlands
| | - Jeroen de Mast
- Economics and Business, University of Amsterdam, Amsterdam, The Netherlands
| | - Alda Marques
- Lab3R - Respiratory Research and Rehabilitation Laboratory, School of Health Sciences, University of Aveiro (ESSUA), Aveiro, Portugal
- iBiMED - Institute of Biomedicine, Department of Medical Sciences, University of Aveiro, Aveiro, Portugal
| | - Frits M E Franssen
- Department of Research and Development, Ciro, Horn, The Netherlands
- Department of Respiratory Medicine, Maastricht University Medical Centre, NUTRIM School of Nutrition and Translational Research in Metabolism, Faculty of Health, Medicine and Life Sciences, Maastricht University, Maastricht, the Netherlands
| | - Martijn A Spruit
- Department of Research and Development, Ciro, Horn, The Netherlands
- Department of Respiratory Medicine, Maastricht University Medical Centre, NUTRIM School of Nutrition and Translational Research in Metabolism, Faculty of Health, Medicine and Life Sciences, Maastricht University, Maastricht, the Netherlands
| | - Qichen Deng
- Department of Research and Development, Ciro, Horn, The Netherlands
- Department of Respiratory Medicine, Maastricht University Medical Centre, NUTRIM School of Nutrition and Translational Research in Metabolism, Faculty of Health, Medicine and Life Sciences, Maastricht University, Maastricht, the Netherlands
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Zhang D, Luan J, Liu B, Yang A, Lv K, Hu P, Han X, Yu H, Shmuel A, Ma G, Zhang C. Comparison of MRI radiomics-based machine learning survival models in predicting prognosis of glioblastoma multiforme. Front Med (Lausanne) 2023; 10:1271687. [PMID: 38098850 PMCID: PMC10720716 DOI: 10.3389/fmed.2023.1271687] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2023] [Accepted: 11/15/2023] [Indexed: 12/17/2023] Open
Abstract
Objective To compare the performance of radiomics-based machine learning survival models in predicting the prognosis of glioblastoma multiforme (GBM) patients. Methods 131 GBM patients were included in our study. The traditional Cox proportional-hazards (CoxPH) model and four machine learning models (SurvivalTree, Random survival forest (RSF), DeepSurv, DeepHit) were constructed, and the performance of the five models was evaluated using the C-index. Results After the screening, 1792 radiomics features were obtained. Seven radiomics features with the strongest relationship with prognosis were obtained following the application of the least absolute shrinkage and selection operator (LASSO) regression. The CoxPH model demonstrated that age (HR = 1.576, p = 0.037), Karnofsky performance status (KPS) score (HR = 1.890, p = 0.006), radiomics risk score (HR = 3.497, p = 0.001), and radiomics risk level (HR = 1.572, p = 0.043) were associated with poorer prognosis. The DeepSurv model performed the best among the five models, obtaining C-index of 0.882 and 0.732 for the training and test set, respectively. The performances of the other four models were lower: CoxPH (0.663 training set / 0.635 test set), SurvivalTree (0.702/0.655), RSF (0.735/0.667), DeepHit (0.608/0.560). Conclusion This study confirmed the superior performance of deep learning algorithms based on radiomics relative to the traditional method in predicting the overall survival of GBM patients; specifically, the DeepSurv model showed the best predictive ability.
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Affiliation(s)
- Di Zhang
- Department of Radiology, Liaocheng People’s Hospital, Shandong First Medical University & Shandong Academy of Medical Sciences, Liaocheng, Shandong, China
| | - Jixin Luan
- China-Japan Friendship Hospital (Institute of Clinical Medical Sciences), Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
- Department of Radiology, China-Japan Friendship Hospital, Beijing, China
| | - Bing Liu
- China-Japan Friendship Hospital (Institute of Clinical Medical Sciences), Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
- Department of Radiology, China-Japan Friendship Hospital, Beijing, China
| | - Aocai Yang
- China-Japan Friendship Hospital (Institute of Clinical Medical Sciences), Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
- Department of Radiology, China-Japan Friendship Hospital, Beijing, China
| | - Kuan Lv
- Peking University China-Japan Friendship School of Clinical Medicine, Beijing, China
| | - Pianpian Hu
- Peking University China-Japan Friendship School of Clinical Medicine, Beijing, China
| | - Xiaowei Han
- Department of Radiology, The Affiliated Drum Tower Hospital of Nanjing University Medical School, Nanjing, China
| | - Hongwei Yu
- Department of Radiology, China-Japan Friendship Hospital, Beijing, China
| | - Amir Shmuel
- McConnell Brain Imaging Centre, Montreal Neurological Institute, McGill University, Montreal, QC, Canada
- Department of Neurology and Neurosurgery, McGill University, Montreal, QC, Canada
| | - Guolin Ma
- Department of Radiology, China-Japan Friendship Hospital, Beijing, China
| | - Chuanchen Zhang
- Department of Radiology, Liaocheng People’s Hospital, Shandong First Medical University & Shandong Academy of Medical Sciences, Liaocheng, Shandong, China
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Lu T, Diao YR, Tang XE, Fan F, Peng Z, Zhan MJ, Liu GF, Lin YS, Cheng ZQ, Yi X, Wang YJ, Chen H, Deng ZH. Deep learning enables automatic adult age estimation based on CT reconstruction images of the costal cartilage. Eur Radiol 2023; 33:7519-7529. [PMID: 37231070 DOI: 10.1007/s00330-023-09761-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2022] [Revised: 03/19/2023] [Accepted: 04/03/2023] [Indexed: 05/27/2023]
Abstract
OBJECTIVE Adult age estimation (AAE) is a challenging task. Deep learning (DL) could be a supportive tool. This study aimed to develop DL models for AAE based on CT images and compare their performance to the manual visual scoring method. METHODS Chest CT were reconstructed using volume rendering (VR) and maximum intensity projection (MIP) separately. Retrospective data of 2500 patients aged 20.00-69.99 years were obtained. The cohort was split into training (80%) and validation (20%) sets. Additional independent data from 200 patients were used as the test set and external validation set. Different modality DL models were developed accordingly. Comparisons were hierarchically performed by VR versus MIP, single-modality versus multi-modality, and DL versus manual method. Mean absolute error (MAE) was the primary parameter of comparison. RESULTS A total of 2700 patients (mean age = 45.24 years ± 14.03 [SD]) were evaluated. Of single-modality models, MAEs yielded by VR were lower than MIP. Multi-modality models generally yielded lower MAEs than the optimal single-modality model. The best-performing multi-modality model obtained the lowest MAEs of 3.78 in males and 3.40 in females. On the test set, DL achieved MAEs of 3.78 in males and 3.92 in females, which were far better than the MAEs of 8.90 and 6.42 respectively, for the manual method. For the external validation, MAEs were 6.05 in males and 6.68 in females for DL, and 6.93 and 8.28 for the manual method. CONCLUSIONS DL demonstrated better performance than the manual method in AAE based on CT reconstruction of the costal cartilage. CLINICAL RELEVANCE STATEMENT Aging leads to diseases, functional performance deterioration, and both physical and physiological damage over time. Accurate AAE may aid in diagnosing the personalization of aging processes. KEY POINTS • VR-based DL models outperformed MIP-based models with lower MAEs and higher R2 values. • All multi-modality DL models showed better performance than single-modality models in adult age estimation. • DL models achieved a better performance than expert assessments.
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Affiliation(s)
- Ting Lu
- West China School of Basic Medical Sciences & Forensic Medicine, Sichuan University, Chengdu, 610041, People's Republic of China
| | - Ya-Ru Diao
- College of Computer Science, Sichuan University, Chengdu, 610064, People's Republic of China
| | - Xian-E Tang
- West China School of Basic Medical Sciences & Forensic Medicine, Sichuan University, Chengdu, 610041, People's Republic of China
| | - Fei Fan
- West China School of Basic Medical Sciences & Forensic Medicine, Sichuan University, Chengdu, 610041, People's Republic of China
| | - Zhao Peng
- Department of Radiology, West China Hospital, Sichuan University, Chengdu, 610041, People's Republic of China
| | - Meng-Jun Zhan
- West China School of Basic Medical Sciences & Forensic Medicine, Sichuan University, Chengdu, 610041, People's Republic of China
| | - Guang-Feng Liu
- West China School of Basic Medical Sciences & Forensic Medicine, Sichuan University, Chengdu, 610041, People's Republic of China
| | - Yu-Shan Lin
- West China School of Basic Medical Sciences & Forensic Medicine, Sichuan University, Chengdu, 610041, People's Republic of China
| | - Zi-Qi Cheng
- West China School of Basic Medical Sciences & Forensic Medicine, Sichuan University, Chengdu, 610041, People's Republic of China
| | - Xu Yi
- Department of Radiology, Beidaihe Hospital, Qinhuangdao, Hebei, 066100, People's Republic of China
| | - Yu-Jun Wang
- Department of Radiology, Beidaihe Hospital, Qinhuangdao, Hebei, 066100, People's Republic of China
| | - Hu Chen
- College of Computer Science, Sichuan University, Chengdu, 610064, People's Republic of China.
| | - Zhen-Hua Deng
- West China School of Basic Medical Sciences & Forensic Medicine, Sichuan University, Chengdu, 610041, People's Republic of China.
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Saha PK, Nadeem SA, Comellas AP. A Survey on Artificial Intelligence in Pulmonary Imaging. WILEY INTERDISCIPLINARY REVIEWS. DATA MINING AND KNOWLEDGE DISCOVERY 2023; 13:e1510. [PMID: 38249785 PMCID: PMC10796150 DOI: 10.1002/widm.1510] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/18/2022] [Accepted: 06/21/2023] [Indexed: 01/23/2024]
Abstract
Over the last decade, deep learning (DL) has contributed a paradigm shift in computer vision and image recognition creating widespread opportunities of using artificial intelligence in research as well as industrial applications. DL has been extensively studied in medical imaging applications, including those related to pulmonary diseases. Chronic obstructive pulmonary disease, asthma, lung cancer, pneumonia, and, more recently, COVID-19 are common lung diseases affecting nearly 7.4% of world population. Pulmonary imaging has been widely investigated toward improving our understanding of disease etiologies and early diagnosis and assessment of disease progression and clinical outcomes. DL has been broadly applied to solve various pulmonary image processing challenges including classification, recognition, registration, and segmentation. This paper presents a survey of pulmonary diseases, roles of imaging in translational and clinical pulmonary research, and applications of different DL architectures and methods in pulmonary imaging with emphasis on DL-based segmentation of major pulmonary anatomies such as lung volumes, lung lobes, pulmonary vessels, and airways as well as thoracic musculoskeletal anatomies related to pulmonary diseases.
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Affiliation(s)
- Punam K Saha
- Departments of Radiology and Electrical and Computer Engineering, University of Iowa, Iowa City, IA, 52242
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Dai Q, Zhu X, Zhang J, Dong Z, Pompeo E, Zheng J, Shi J. The utility of quantitative computed tomography in cohort studies of chronic obstructive pulmonary disease: a narrative review. J Thorac Dis 2023; 15:5784-5800. [PMID: 37969311 PMCID: PMC10636446 DOI: 10.21037/jtd-23-1421] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2023] [Accepted: 09/27/2023] [Indexed: 11/17/2023]
Abstract
Background and Objective Chronic obstructive pulmonary disease (COPD) is a significant contributor to global morbidity and mortality. Quantitative computed tomography (QCT), a non-invasive imaging modality, offers the potential to assess lung structure and function in COPD patients. Amidst the coronavirus disease 2019 (COVID-19) pandemic, chest computed tomography (CT) scans have emerged as a viable alternative for assessing pulmonary function (e.g., spirometry), minimizing the risk of aerosolized virus transmission. However, the clinical application of QCT measurements is not yet widespread enough, necessitating broader validation to determine its usefulness in COPD management. Methods We conducted a search in the PubMed database in English from January 1, 2013 to April 20, 2023, using keywords and controlled vocabulary related to QCT, COPD, and cohort studies. Key Content and Findings Existing studies have demonstrated the potential of QCT in providing valuable information on lung volume, airway geometry, airway wall thickness, emphysema, and lung tissue density in COPD patients. Moreover, QCT values have shown robust correlations with pulmonary function tests, and can predict exacerbation risk and mortality in patients with COPD. QCT can even discern COPD subtypes based on phenotypic characteristics such as emphysema predominance, supporting targeted management and interventions. Conclusions QCT has shown promise in cohort studies related to COPD, since it can provide critical insights into the pathogenesis and progression of the disease. Further research is necessary to determine the clinical significance of QCT measurements for COPD management.
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Affiliation(s)
- Qi Dai
- School of Medicine, Tongji University, Shanghai, China
- Department of Radiology, Ningbo No.2 Hospitall, Ningbo, China
| | - Xiaoxiao Zhu
- Department of Respiratory and Critical Care Medicine, Ningbo No.2 Hospital, Ningbo, China
| | - Jingfeng Zhang
- Department of Radiology, Ningbo No.2 Hospitall, Ningbo, China
| | - Zhaoxing Dong
- Department of Respiratory and Critical Care Medicine, Ningbo No.2 Hospital, Ningbo, China
| | - Eugenio Pompeo
- Department of Thoracic Surgery, Policlinico Tor Vergata University, Rome, Italy
| | - Jianjun Zheng
- Department of Radiology, Ningbo No.2 Hospitall, Ningbo, China
| | - Jingyun Shi
- School of Medicine, Tongji University, Shanghai, China
- Department of Radiology, Shanghai Pulmonary Hospital, School of Medicine, Tongji University, Shanghai, China
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Ash SY, Choi B, Oh A, Lynch DA, Humphries SM. Deep Learning Assessment of Progression of Emphysema and Fibrotic Interstitial Lung Abnormality. Am J Respir Crit Care Med 2023; 208:666-675. [PMID: 37364281 PMCID: PMC10515569 DOI: 10.1164/rccm.202211-2098oc] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2022] [Accepted: 06/26/2023] [Indexed: 06/28/2023] Open
Abstract
Rationale: Although studies have evaluated emphysema and fibrotic interstitial lung abnormality individually, less is known about their combined progression. Objectives: To define clinically meaningful progression of fibrotic interstitial lung abnormality in smokers without interstitial lung disease and evaluate the effects of fibrosis and emphysema progression on mortality. Methods: Emphysema and pulmonary fibrosis were assessed on the basis of baseline and 5-year follow-up computed tomography scans of 4,450 smokers in the COPDGene Study using deep learning algorithms. Emphysema was classified as absent, trace, mild, moderate, confluent, or advanced destructive. Fibrosis was expressed as a percentage of lung volume. Emphysema progression was defined as an increase by at least one grade. A hybrid distribution and anchor-based method was used to determine the minimal clinically important difference in fibrosis. The relationship between progression and mortality was evaluated using multivariable shared frailty models using an age timescale. Measurements and Main Results: The minimal clinically important difference for fibrosis was 0.58%. On the basis of this threshold, 2,822 (63%) had progression of neither emphysema nor fibrosis, 841 (19%) had emphysema progression alone, 512 (12%) had fibrosis progression alone, and 275 (6.2%) had progression of both. Compared with nonprogressors, hazard ratios for mortality were 1.42 (95% confidence interval, 1.11-1.82) in emphysema progressors, 1.49 (1.14-1.94) in fibrosis progressors, and 2.18 (1.58-3.02) in those with progression of both emphysema and fibrosis. Conclusions: In smokers without known interstitial lung disease, small changes in fibrosis may be clinically significant, and combined progression of emphysema and fibrosis is associated with increased mortality.
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Affiliation(s)
- Samuel Y. Ash
- Department of Critical Care, South Shore Hospital, South Weymouth, Massachusetts
- Applied Chest Imaging Laboratory and
| | - Bina Choi
- Applied Chest Imaging Laboratory and
- Division of Pulmonary and Critical Care Medicine, Department of Medicine, Brigham and Women’s Hospital, Boston, Massachusetts
| | - Andrea Oh
- Department of Radiology, University of California, Los Angeles Health, Los Angeles, California; and
| | - David A. Lynch
- Department of Radiology, National Jewish Health, Denver, Colorado
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Raoof S, Shah M, Braman S, Agrawal A, Allaqaband H, Bowler R, Castaldi P, DeMeo D, Fernando S, Hall CS, Han MK, Hogg J, Humphries S, Lee HY, Lee KS, Lynch D, Machnicki S, Mehta A, Mehta S, Mina B, Naidich D, Naidich J, Ohno Y, Regan E, van Beek EJR, Washko G, Make B. Lung Imaging in COPD Part 2: Emerging Concepts. Chest 2023; 164:339-354. [PMID: 36907375 PMCID: PMC10475822 DOI: 10.1016/j.chest.2023.02.049] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2022] [Revised: 02/23/2023] [Accepted: 02/25/2023] [Indexed: 03/13/2023] Open
Abstract
The diagnosis, prognostication, and differentiation of phenotypes of COPD can be facilitated by CT scan imaging of the chest. CT scan imaging of the chest is a prerequisite for lung volume reduction surgery and lung transplantation. Quantitative analysis can be used to evaluate extent of disease progression. Evolving imaging techniques include micro-CT scan, ultra-high-resolution and photon-counting CT scan imaging, and MRI. Potential advantages of these newer techniques include improved resolution, prediction of reversibility, and obviation of radiation exposure. This article discusses important emerging techniques in imaging patients with COPD. The clinical usefulness of these emerging techniques as they stand today are tabulated for the benefit of the practicing pulmonologist.
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Affiliation(s)
- Suhail Raoof
- Northwell Health, Lenox Hill Hospital, New York, NY.
| | - Manav Shah
- Northwell Health, Lenox Hill Hospital, New York, NY
| | - Sidney Braman
- Icahn School of Medicine at Mount Sinai, New York, NY
| | | | | | | | | | - Dawn DeMeo
- Brigham and Women's Hospital, Boston, MA
| | | | | | | | - James Hogg
- University of British Columbia, Vancouver, BC, Canada
| | | | - Ho Yun Lee
- Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, South Korea; Department of Health Sciences and Technology, Sungkyunkwan University, ChangWon, South Korea
| | - Kyung Soo Lee
- Sungkyunkwan University School of Medicine, Samsung ChangWon Hospital, ChangWon, South Korea
| | | | | | | | | | - Bushra Mina
- Northwell Health, Lenox Hill Hospital, New York, NY
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Tan S, Saffar B, Wrobel J, Laycock A, Melsom S. Air trapping in small airway diseases: A review of imaging technique and findings with an overview of small airway diseases. J Med Imaging Radiat Oncol 2023; 67:499-508. [PMID: 37222171 DOI: 10.1111/1754-9485.13540] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2023] [Accepted: 05/05/2023] [Indexed: 05/25/2023]
Abstract
Air trapping is a common finding radiologists encounter on CT imaging of the thorax. This term is used when there are geographic areas of differing attenuation within the lung parenchyma. Most commonly, this is the result of abnormal retention of air due to complete or partial airway obstruction from small airway pathologies. Perfusional differences due to underlying vascular diseases could also result in these appearances, and hence, inspiratory and full expiratory phase CT studies are required to accurately diagnose air trapping. It is important to note that this can occasionally be present in healthy patients. Multiple diseases are associated with air trapping. Determining the aetiology relies on accurate patient history and concomitant findings on CT. There is currently no consensus on accurate assessment of the severity of air trapping. The ratio of mean lung density between expiration and inspiration on CT and the change in lung volume have demonstrated a positive correlation with the presence of small airway disease. Treatment and resultant patient outcome depend on the underlying aetiology, and hence, radiologists need to be familiar with the common causes of air trapping. This paper outlines the most common disease processes leading to air trapping, including Constrictive bronchiolitis, Hypersensitivity pneumonitis, DIPNECH, and Post-infectious (Swyer-James/Macleod). Various diseases result in the air trapping pattern seen on the expiratory phase CT scan of the thorax. Combining patient history with other concomitant imaging findings is essential for accurate diagnosis and to further guide management.
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Affiliation(s)
- Samantha Tan
- Department of Medical Imaging, Fiona Stanley Hospital, Perth, Western Australia, Australia
| | - Bann Saffar
- Department of Medical Imaging, Fiona Stanley Hospital, Perth, Western Australia, Australia
| | - Jeremy Wrobel
- Department of Respiratory Medicine, Fiona Stanley Hospital, Perth, Western Australia, Australia
| | - Andrew Laycock
- Department of Anatomical Pathology, Fiona Stanley Hospital, Perth, Western Australia, Australia
| | - Stephen Melsom
- Department of Medical Imaging, Fiona Stanley Hospital, Perth, Western Australia, Australia
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Zhang Z, Peng J. Clinical nursing and postoperative prediction of gastrointestinal cancer based on CT deep learning model. JOURNAL OF RADIATION RESEARCH AND APPLIED SCIENCES 2023. [DOI: 10.1016/j.jrras.2023.100561] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/03/2023]
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Long H, Li S, Chen Y. Digital health in chronic obstructive pulmonary disease. Chronic Dis Transl Med 2023; 9:90-103. [PMID: 37305103 PMCID: PMC10249197 DOI: 10.1002/cdt3.68] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2022] [Revised: 02/11/2023] [Accepted: 04/03/2023] [Indexed: 06/13/2023] Open
Abstract
Chronic obstructive pulmonary disease (COPD) can be prevented and treated through effective care, reducing exacerbations and hospitalizations. Early identification of individuals at high risk of COPD exacerbation is an opportunity for preventive measures. However, many patients struggle to follow their treatment plans because of a lack of knowledge about the disease, limited access to resources, and insufficient clinical support. The growth of digital health-which encompasses advancements in health information technology, artificial intelligence, telehealth, the Internet of Things, mobile health, wearable technology, and digital therapeutics-offers opportunities for improving the early diagnosis and management of COPD. This study reviewed the field of digital health in terms of COPD. The findings showed that despite significant advances in digital health, there are still obstacles impeding its effectiveness. Finally, we highlighted some of the major challenges and possibilities for developing and integrating digital health in COPD management.
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Affiliation(s)
- Huanyu Long
- Department of Pulmonary and Critical Care MedicinePeking University Third HospitalBeijingChina
| | - Shurun Li
- Peking University Health Science CenterBeijingChina
| | - Yahong Chen
- Department of Pulmonary and Critical Care MedicinePeking University Third HospitalBeijingChina
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Amudala Puchakayala PR, Sthanam VL, Nakhmani A, Chaudhary MFA, Kizhakke Puliyakote A, Reinhardt JM, Zhang C, Bhatt SP, Bodduluri S. Radiomics for Improved Detection of Chronic Obstructive Pulmonary Disease in Low-Dose and Standard-Dose Chest CT Scans. Radiology 2023; 307:e222998. [PMID: 37338355 PMCID: PMC10315520 DOI: 10.1148/radiol.222998] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2022] [Revised: 04/07/2023] [Accepted: 04/24/2023] [Indexed: 06/21/2023]
Abstract
Background Approximately half of adults with chronic obstructive pulmonary disease (COPD) remain undiagnosed. Chest CT scans are frequently acquired in clinical practice and present an opportunity to detect COPD. Purpose To assess the performance of radiomics features in COPD diagnosis using standard-dose and low-dose CT models. Materials and Methods This secondary analysis included participants enrolled in the Genetic Epidemiology of COPD, or COPDGene, study at baseline (visit 1) and 10 years after baseline (visit 3). COPD was defined by a forced expiratory volume in the 1st second of expiration to forced vital capacity ratio less than 0.70 at spirometry. The performance of demographics, CT emphysema percentage, radiomics features, and a combined feature set derived from inspiratory CT alone was evaluated. CatBoost (Yandex), a gradient boosting algorithm, was used to perform two classification experiments to detect COPD; the two models were trained and tested on standard-dose CT data from visit 1 (model I) and low-dose CT data from visit 3 (model II). Classification performance of the models was evaluated using area under the receiver operating characteristic curve (AUC) and precision-recall curve analysis. Results A total of 8878 participants (mean age, 57 years ± 9 [SD]; 4180 female, 4698 male) were evaluated. Radiomics features in model I achieved an AUC of 0.90 (95% CI: 0.88, 0.91) in the standard-dose CT test cohort versus demographics (AUC, 0.73; 95% CI: 0.71, 0.76; P < .001), emphysema percentage (AUC, 0.82; 95% CI 0.80, 0.84; P < .001), and combined features (AUC, 0.90; 95% CI: 0.89, 0.92; P = .16). Model II, trained on low-dose CT scans, achieved an AUC of 0.87 (95% CI: 0.83, 0.91) on the 20% held-out test set for radiomics features compared with demographics (AUC, 0.70; 95% CI: 0.64, 0.75; P = .001), emphysema percentage (AUC, 0.74; 95% CI: 0.69, 0.79; P = .002), and combined features (AUC, 0.88; 95% CI: 0.85, 0.92; P = .32). Density and texture features were the majority of the top 10 features in the standard-dose model, whereas shape features of lungs and airways were significant contributors in the low-dose CT model. Conclusion A combination of features representing parenchymal texture and lung and airway shape on inspiratory CT scans can be used to accurately detect COPD. ClinicalTrials.gov registration no. NCT00608764 © RSNA, 2023 Supplemental material is available for this article. See also the editorial by Vliegenthart in this issue.
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Affiliation(s)
- Praneeth Reddy Amudala Puchakayala
- From the UAB Lung Imaging Lab (P.R.A.P., V.L.S., A.N., A.K.P.,
S.P.B., S.B.), Department of Computer Science (P.R.A.P., C.Z.), Department of
Electrical and Computer Engineering (V.L.S., A.N.), and Division of Pulmonary,
Allergy and Critical Care Medicine (A.K.P., S.P.B., S.B.), University of Alabama
at Birmingham, 1720 2nd Ave S, THT 422, Birmingham, AL 35294; and The Roy
J. Carver Department of Biomedical Engineering, University of Iowa, Iowa City,
Iowa (M.F.A.C., J.M.R.)
| | - Venkata L. Sthanam
- From the UAB Lung Imaging Lab (P.R.A.P., V.L.S., A.N., A.K.P.,
S.P.B., S.B.), Department of Computer Science (P.R.A.P., C.Z.), Department of
Electrical and Computer Engineering (V.L.S., A.N.), and Division of Pulmonary,
Allergy and Critical Care Medicine (A.K.P., S.P.B., S.B.), University of Alabama
at Birmingham, 1720 2nd Ave S, THT 422, Birmingham, AL 35294; and The Roy
J. Carver Department of Biomedical Engineering, University of Iowa, Iowa City,
Iowa (M.F.A.C., J.M.R.)
| | - Arie Nakhmani
- From the UAB Lung Imaging Lab (P.R.A.P., V.L.S., A.N., A.K.P.,
S.P.B., S.B.), Department of Computer Science (P.R.A.P., C.Z.), Department of
Electrical and Computer Engineering (V.L.S., A.N.), and Division of Pulmonary,
Allergy and Critical Care Medicine (A.K.P., S.P.B., S.B.), University of Alabama
at Birmingham, 1720 2nd Ave S, THT 422, Birmingham, AL 35294; and The Roy
J. Carver Department of Biomedical Engineering, University of Iowa, Iowa City,
Iowa (M.F.A.C., J.M.R.)
| | - Muhammad F. A. Chaudhary
- From the UAB Lung Imaging Lab (P.R.A.P., V.L.S., A.N., A.K.P.,
S.P.B., S.B.), Department of Computer Science (P.R.A.P., C.Z.), Department of
Electrical and Computer Engineering (V.L.S., A.N.), and Division of Pulmonary,
Allergy and Critical Care Medicine (A.K.P., S.P.B., S.B.), University of Alabama
at Birmingham, 1720 2nd Ave S, THT 422, Birmingham, AL 35294; and The Roy
J. Carver Department of Biomedical Engineering, University of Iowa, Iowa City,
Iowa (M.F.A.C., J.M.R.)
| | - Abhilash Kizhakke Puliyakote
- From the UAB Lung Imaging Lab (P.R.A.P., V.L.S., A.N., A.K.P.,
S.P.B., S.B.), Department of Computer Science (P.R.A.P., C.Z.), Department of
Electrical and Computer Engineering (V.L.S., A.N.), and Division of Pulmonary,
Allergy and Critical Care Medicine (A.K.P., S.P.B., S.B.), University of Alabama
at Birmingham, 1720 2nd Ave S, THT 422, Birmingham, AL 35294; and The Roy
J. Carver Department of Biomedical Engineering, University of Iowa, Iowa City,
Iowa (M.F.A.C., J.M.R.)
| | - Joseph M. Reinhardt
- From the UAB Lung Imaging Lab (P.R.A.P., V.L.S., A.N., A.K.P.,
S.P.B., S.B.), Department of Computer Science (P.R.A.P., C.Z.), Department of
Electrical and Computer Engineering (V.L.S., A.N.), and Division of Pulmonary,
Allergy and Critical Care Medicine (A.K.P., S.P.B., S.B.), University of Alabama
at Birmingham, 1720 2nd Ave S, THT 422, Birmingham, AL 35294; and The Roy
J. Carver Department of Biomedical Engineering, University of Iowa, Iowa City,
Iowa (M.F.A.C., J.M.R.)
| | - Chengcui Zhang
- From the UAB Lung Imaging Lab (P.R.A.P., V.L.S., A.N., A.K.P.,
S.P.B., S.B.), Department of Computer Science (P.R.A.P., C.Z.), Department of
Electrical and Computer Engineering (V.L.S., A.N.), and Division of Pulmonary,
Allergy and Critical Care Medicine (A.K.P., S.P.B., S.B.), University of Alabama
at Birmingham, 1720 2nd Ave S, THT 422, Birmingham, AL 35294; and The Roy
J. Carver Department of Biomedical Engineering, University of Iowa, Iowa City,
Iowa (M.F.A.C., J.M.R.)
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Wang R, Huang C, Yang W, Wang C, Wang P, Guo L, Cao J, Huang L, Song H, Zhang C, Zhang Y, Shi G. Respiratory microbiota and radiomics features in the stable COPD patients. Respir Res 2023; 24:131. [PMID: 37173744 PMCID: PMC10176953 DOI: 10.1186/s12931-023-02434-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2022] [Accepted: 04/25/2023] [Indexed: 05/15/2023] Open
Abstract
BACKGROUNDS The respiratory microbiota and radiomics correlate with the disease severity and prognosis of chronic obstructive pulmonary disease (COPD). We aim to characterize the respiratory microbiota and radiomics features of COPD patients and explore the relationship between them. METHODS Sputa from stable COPD patients were collected for bacterial 16 S rRNA gene sequencing and fungal Internal Transcribed Spacer (ITS) sequencing. Chest computed tomography (CT) and 3D-CT analysis were conducted for radiomics information, including the percentages of low attenuation area below - 950 Hounsfield Units (LAA%), wall thickness (WT), and intraluminal area (Ai). WT and Ai were adjusted by body surface area (BSA) to WT/[Formula: see text] and Ai/BSA, respectively. Some key pulmonary function indicators were collected, which included forced expiratory volume in one second (FEV1), forced vital capacity (FVC), diffusion lung carbon monoxide (DLco). Differences and correlations of microbiomics with radiomics and clinical indicators between different patient subgroups were assessed. RESULTS Two bacterial clusters dominated by Streptococcus and Rothia were identified. Chao and Shannon indices were higher in the Streptococcus cluster than that in the Rothia cluster. Principal Co-ordinates Analysis (PCoA) indicated significant differences between their community structures. Higher relative abundance of Actinobacteria was detected in the Rothia cluster. Some genera were more common in the Streptococcus cluster, mainly including Leptotrichia, Oribacterium, Peptostreptococcus. Peptostreptococcus was positively correlated with DLco per unit of alveolar volume as a percentage of predicted value (DLco/VA%pred). The patients with past-year exacerbations were more in the Streptococcus cluster. Fungal analysis revealed two clusters dominated by Aspergillus and Candida. Chao and Shannon indices of the Aspergillus cluster were higher than that in the Candida cluster. PCoA showed distinct community compositions between the two clusters. Greater abundance of Cladosporium and Penicillium was found in the Aspergillus cluster. The patients of the Candida cluster had upper FEV1 and FEV1/FVC levels. In radiomics, the patients of the Rothia cluster had higher LAA% and WT/[Formula: see text] than those of the Streptococcus cluster. Haemophilus, Neisseria and Cutaneotrichosporon positively correlated with Ai/BSA, but Cladosporium negatively correlated with Ai/BSA. CONCLUSIONS Among respiratory microbiota in stable COPD patients, Streptococcus dominance was associated with an increased risk of exacerbation, and Rothia dominance was relevant to worse emphysema and airway lesions. Peptostreptococcus, Haemophilus, Neisseria and Cutaneotrichosporon probably affected COPD progression and potentially could be disease prediction biomarkers.
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Affiliation(s)
- Rong Wang
- Department of Pulmonary and Critical Care Medicine, the Affiliated Hospital of Kunming University of Science and Technology, the First People's Hospital of Yunnan Province, Kunming, 650032, People's Republic of China
- Medical School, Kunming University of Science and Technology, Kunming, 650500, People's Republic of China
- Department of Pulmonary and Critical Care Medicine, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine. Institute of Respiratory Diseases, Shanghai Jiao Tong University School of Medicine. Shanghai Key Laboratory of Emergency Prevention, Diagnosis and Treatment of Respiratory Infectious Diseases, Shanghai, 200025, People's Republic of China
| | - Chunrong Huang
- Department of Pulmonary and Critical Care Medicine, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine. Institute of Respiratory Diseases, Shanghai Jiao Tong University School of Medicine. Shanghai Key Laboratory of Emergency Prevention, Diagnosis and Treatment of Respiratory Infectious Diseases, Shanghai, 200025, People's Republic of China
| | - Wenjie Yang
- Department of Radiology, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, 200025, People's Republic of China
| | - Cui Wang
- Department of Pulmonary and Critical Care Medicine, the Third People's Hospital of Kunshan, Suzhou, 215300, People's Republic of China
| | - Ping Wang
- Department of Pulmonary and Critical Care Medicine, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine. Institute of Respiratory Diseases, Shanghai Jiao Tong University School of Medicine. Shanghai Key Laboratory of Emergency Prevention, Diagnosis and Treatment of Respiratory Infectious Diseases, Shanghai, 200025, People's Republic of China
| | - Leixin Guo
- Department of Pulmonary and Critical Care Medicine, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine. Institute of Respiratory Diseases, Shanghai Jiao Tong University School of Medicine. Shanghai Key Laboratory of Emergency Prevention, Diagnosis and Treatment of Respiratory Infectious Diseases, Shanghai, 200025, People's Republic of China
| | - Jin Cao
- Department of Pulmonary and Critical Care Medicine, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine. Institute of Respiratory Diseases, Shanghai Jiao Tong University School of Medicine. Shanghai Key Laboratory of Emergency Prevention, Diagnosis and Treatment of Respiratory Infectious Diseases, Shanghai, 200025, People's Republic of China
| | - Lin Huang
- Department of Pulmonary and Critical Care Medicine, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine. Institute of Respiratory Diseases, Shanghai Jiao Tong University School of Medicine. Shanghai Key Laboratory of Emergency Prevention, Diagnosis and Treatment of Respiratory Infectious Diseases, Shanghai, 200025, People's Republic of China
| | - Hejie Song
- Department of Pulmonary and Critical Care Medicine, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine. Institute of Respiratory Diseases, Shanghai Jiao Tong University School of Medicine. Shanghai Key Laboratory of Emergency Prevention, Diagnosis and Treatment of Respiratory Infectious Diseases, Shanghai, 200025, People's Republic of China
| | - Chenhong Zhang
- State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, 200240, People's Republic of China.
| | - Yunhui Zhang
- Department of Pulmonary and Critical Care Medicine, the Affiliated Hospital of Kunming University of Science and Technology, the First People's Hospital of Yunnan Province, Kunming, 650032, People's Republic of China.
| | - Guochao Shi
- Department of Pulmonary and Critical Care Medicine, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine. Institute of Respiratory Diseases, Shanghai Jiao Tong University School of Medicine. Shanghai Key Laboratory of Emergency Prevention, Diagnosis and Treatment of Respiratory Infectious Diseases, Shanghai, 200025, People's Republic of China.
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Yang X, Wu J, Chen X. Application of Artificial Intelligence to the Diagnosis and Therapy of Nasopharyngeal Carcinoma. J Clin Med 2023; 12:jcm12093077. [PMID: 37176518 PMCID: PMC10178972 DOI: 10.3390/jcm12093077] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2023] [Revised: 04/12/2023] [Accepted: 04/18/2023] [Indexed: 05/15/2023] Open
Abstract
Artificial intelligence (AI) is an interdisciplinary field that encompasses a wide range of computer science disciplines, including image recognition, machine learning, human-computer interaction, robotics and so on. Recently, AI, especially deep learning algorithms, has shown excellent performance in the field of image recognition, being able to automatically perform quantitative evaluation of complex medical image features to improve diagnostic accuracy and efficiency. AI has a wider and deeper application in the medical field of diagnosis, treatment and prognosis. Nasopharyngeal carcinoma (NPC) occurs frequently in southern China and Southeast Asian countries and is the most common head and neck cancer in the region. Detecting and treating NPC early is crucial for a good prognosis. This paper describes the basic concepts of AI, including traditional machine learning and deep learning algorithms, and their clinical applications of detecting and assessing NPC lesions, facilitating treatment and predicting prognosis. The main limitations of current AI technologies are briefly described, including interpretability issues, privacy and security and the need for large amounts of annotated data. Finally, we discuss the remaining challenges and the promising future of using AI to diagnose and treat NPC.
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Affiliation(s)
- Xinggang Yang
- Division of Biotherapy, Cancer Center, State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, Guoxue Road 37, Chengdu 610041, China
| | - Juan Wu
- Out-Patient Department, West China Hospital, Sichuan University, Guoxue Road 37, Chengdu 610041, China
| | - Xiyang Chen
- Division of Vascular Surgery, Department of General Surgery, West China Hospital, Sichuan University, Guoxue Road 37, Chengdu 610041, China
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50
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Díaz AA, Nardelli P, Wang W, San José Estépar R, Yen A, Kligerman S, Maselli DJ, Dolliver WR, Tsao A, Orejas JL, Aliberti S, Aksamit TR, Young KA, Kinney GL, Washko GR, Silverman EK, San José Estépar R. Artificial Intelligence-based CT Assessment of Bronchiectasis: The COPDGene Study. Radiology 2023; 307:e221109. [PMID: 36511808 PMCID: PMC10068886 DOI: 10.1148/radiol.221109] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2022] [Revised: 09/28/2022] [Accepted: 10/18/2022] [Indexed: 12/15/2022]
Abstract
Background CT is the standard method used to assess bronchiectasis. A higher airway-to-artery diameter ratio (AAR) is typically used to identify enlarged bronchi and bronchiectasis; however, current imaging methods are limited in assessing the extent of this metric in CT scans. Purpose To determine the extent of AARs using an artificial intelligence-based chest CT and assess the association of AARs with exacerbations over time. Materials and Methods In a secondary analysis of ever-smokers from the prospective, observational, multicenter COPDGene study, AARs were quantified using an artificial intelligence tool. The percentage of airways with AAR greater than 1 (a measure of airway dilatation) in each participant on chest CT scans was determined. Pulmonary exacerbations were prospectively determined through biannual follow-up (from July 2009 to September 2021). Multivariable zero-inflated regression models were used to assess the association between the percentage of airways with AAR greater than 1 and the total number of pulmonary exacerbations over follow-up. Covariates included demographics, lung function, and conventional CT parameters. Results Among 4192 participants (median age, 59 years; IQR, 52-67 years; 1878 men [45%]), 1834 had chronic obstructive pulmonary disease (COPD). During a 10-year follow-up and in adjusted models, the percentage of airways with AARs greater than 1 (quartile 4 vs 1) was associated with a higher total number of exacerbations (risk ratio [RR], 1.08; 95% CI: 1.02, 1.15; P = .01). In participants meeting clinical and imaging criteria of bronchiectasis (ie, clinical manifestations with ≥3% of AARs >1) versus those who did not, the RR was 1.37 (95% CI: 1.31, 1.43; P < .001). Among participants with COPD, the corresponding RRs were 1.10 (95% CI: 1.02, 1.18; P = .02) and 1.32 (95% CI: 1.26, 1.39; P < .001), respectively. Conclusion In ever-smokers with chronic obstructive pulmonary disease, artificial intelligence-based CT measures of bronchiectasis were associated with more exacerbations over time. Clinical trial registration no. NCT00608764 © RSNA, 2022 Supplemental material is available for this article. See also the editorial by Schiebler and Seo in this issue.
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Affiliation(s)
- Alejandro A. Díaz
- From the Division of Pulmonary and Critical Care Medicine (A.A.D.,
W.R.D., A.T., J.L.O., G.R.W.), Department of Radiology (P.N., Rubén San
José Estépar, Raúl San José Estépar),
Division of Sleep Medicine and Circadian Disorders (W.W.), and Channing Division
of Network Medicine (E.K.S.), Brigham and Women’s Hospital, Harvard
Medical School, 15 Francis St, Boston, MA 02115; Department of Radiology,
University of California–San Diego, San Diego, Calif (A.Y., S.K.);
Division of Pulmonary Diseases and Critical Care, University of Texas–San
Antonio, San Antonio, Tex (D.J.M.); Department of Biomedical Sciences, Humanitas
University, Milan, Italy (S.A.); Respiratory Unit, IRCCS Humanitas Research
Hospital, Milan, Italy (S.A.); Department of Pulmonary Disease and Critical Care
Medicine, Mayo Clinic, Rochester, Minn (T.R.A.); and Department of Epidemiology,
Colorado School of Public Health, University of Colorado, Aurora, Colo (K.A.Y.,
G.L.K.)
| | - Pietro Nardelli
- From the Division of Pulmonary and Critical Care Medicine (A.A.D.,
W.R.D., A.T., J.L.O., G.R.W.), Department of Radiology (P.N., Rubén San
José Estépar, Raúl San José Estépar),
Division of Sleep Medicine and Circadian Disorders (W.W.), and Channing Division
of Network Medicine (E.K.S.), Brigham and Women’s Hospital, Harvard
Medical School, 15 Francis St, Boston, MA 02115; Department of Radiology,
University of California–San Diego, San Diego, Calif (A.Y., S.K.);
Division of Pulmonary Diseases and Critical Care, University of Texas–San
Antonio, San Antonio, Tex (D.J.M.); Department of Biomedical Sciences, Humanitas
University, Milan, Italy (S.A.); Respiratory Unit, IRCCS Humanitas Research
Hospital, Milan, Italy (S.A.); Department of Pulmonary Disease and Critical Care
Medicine, Mayo Clinic, Rochester, Minn (T.R.A.); and Department of Epidemiology,
Colorado School of Public Health, University of Colorado, Aurora, Colo (K.A.Y.,
G.L.K.)
| | - Wei Wang
- From the Division of Pulmonary and Critical Care Medicine (A.A.D.,
W.R.D., A.T., J.L.O., G.R.W.), Department of Radiology (P.N., Rubén San
José Estépar, Raúl San José Estépar),
Division of Sleep Medicine and Circadian Disorders (W.W.), and Channing Division
of Network Medicine (E.K.S.), Brigham and Women’s Hospital, Harvard
Medical School, 15 Francis St, Boston, MA 02115; Department of Radiology,
University of California–San Diego, San Diego, Calif (A.Y., S.K.);
Division of Pulmonary Diseases and Critical Care, University of Texas–San
Antonio, San Antonio, Tex (D.J.M.); Department of Biomedical Sciences, Humanitas
University, Milan, Italy (S.A.); Respiratory Unit, IRCCS Humanitas Research
Hospital, Milan, Italy (S.A.); Department of Pulmonary Disease and Critical Care
Medicine, Mayo Clinic, Rochester, Minn (T.R.A.); and Department of Epidemiology,
Colorado School of Public Health, University of Colorado, Aurora, Colo (K.A.Y.,
G.L.K.)
| | - Rubén San José Estépar
- From the Division of Pulmonary and Critical Care Medicine (A.A.D.,
W.R.D., A.T., J.L.O., G.R.W.), Department of Radiology (P.N., Rubén San
José Estépar, Raúl San José Estépar),
Division of Sleep Medicine and Circadian Disorders (W.W.), and Channing Division
of Network Medicine (E.K.S.), Brigham and Women’s Hospital, Harvard
Medical School, 15 Francis St, Boston, MA 02115; Department of Radiology,
University of California–San Diego, San Diego, Calif (A.Y., S.K.);
Division of Pulmonary Diseases and Critical Care, University of Texas–San
Antonio, San Antonio, Tex (D.J.M.); Department of Biomedical Sciences, Humanitas
University, Milan, Italy (S.A.); Respiratory Unit, IRCCS Humanitas Research
Hospital, Milan, Italy (S.A.); Department of Pulmonary Disease and Critical Care
Medicine, Mayo Clinic, Rochester, Minn (T.R.A.); and Department of Epidemiology,
Colorado School of Public Health, University of Colorado, Aurora, Colo (K.A.Y.,
G.L.K.)
| | - Andrew Yen
- From the Division of Pulmonary and Critical Care Medicine (A.A.D.,
W.R.D., A.T., J.L.O., G.R.W.), Department of Radiology (P.N., Rubén San
José Estépar, Raúl San José Estépar),
Division of Sleep Medicine and Circadian Disorders (W.W.), and Channing Division
of Network Medicine (E.K.S.), Brigham and Women’s Hospital, Harvard
Medical School, 15 Francis St, Boston, MA 02115; Department of Radiology,
University of California–San Diego, San Diego, Calif (A.Y., S.K.);
Division of Pulmonary Diseases and Critical Care, University of Texas–San
Antonio, San Antonio, Tex (D.J.M.); Department of Biomedical Sciences, Humanitas
University, Milan, Italy (S.A.); Respiratory Unit, IRCCS Humanitas Research
Hospital, Milan, Italy (S.A.); Department of Pulmonary Disease and Critical Care
Medicine, Mayo Clinic, Rochester, Minn (T.R.A.); and Department of Epidemiology,
Colorado School of Public Health, University of Colorado, Aurora, Colo (K.A.Y.,
G.L.K.)
| | - Seth Kligerman
- From the Division of Pulmonary and Critical Care Medicine (A.A.D.,
W.R.D., A.T., J.L.O., G.R.W.), Department of Radiology (P.N., Rubén San
José Estépar, Raúl San José Estépar),
Division of Sleep Medicine and Circadian Disorders (W.W.), and Channing Division
of Network Medicine (E.K.S.), Brigham and Women’s Hospital, Harvard
Medical School, 15 Francis St, Boston, MA 02115; Department of Radiology,
University of California–San Diego, San Diego, Calif (A.Y., S.K.);
Division of Pulmonary Diseases and Critical Care, University of Texas–San
Antonio, San Antonio, Tex (D.J.M.); Department of Biomedical Sciences, Humanitas
University, Milan, Italy (S.A.); Respiratory Unit, IRCCS Humanitas Research
Hospital, Milan, Italy (S.A.); Department of Pulmonary Disease and Critical Care
Medicine, Mayo Clinic, Rochester, Minn (T.R.A.); and Department of Epidemiology,
Colorado School of Public Health, University of Colorado, Aurora, Colo (K.A.Y.,
G.L.K.)
| | - Diego J. Maselli
- From the Division of Pulmonary and Critical Care Medicine (A.A.D.,
W.R.D., A.T., J.L.O., G.R.W.), Department of Radiology (P.N., Rubén San
José Estépar, Raúl San José Estépar),
Division of Sleep Medicine and Circadian Disorders (W.W.), and Channing Division
of Network Medicine (E.K.S.), Brigham and Women’s Hospital, Harvard
Medical School, 15 Francis St, Boston, MA 02115; Department of Radiology,
University of California–San Diego, San Diego, Calif (A.Y., S.K.);
Division of Pulmonary Diseases and Critical Care, University of Texas–San
Antonio, San Antonio, Tex (D.J.M.); Department of Biomedical Sciences, Humanitas
University, Milan, Italy (S.A.); Respiratory Unit, IRCCS Humanitas Research
Hospital, Milan, Italy (S.A.); Department of Pulmonary Disease and Critical Care
Medicine, Mayo Clinic, Rochester, Minn (T.R.A.); and Department of Epidemiology,
Colorado School of Public Health, University of Colorado, Aurora, Colo (K.A.Y.,
G.L.K.)
| | - Wojciech R. Dolliver
- From the Division of Pulmonary and Critical Care Medicine (A.A.D.,
W.R.D., A.T., J.L.O., G.R.W.), Department of Radiology (P.N., Rubén San
José Estépar, Raúl San José Estépar),
Division of Sleep Medicine and Circadian Disorders (W.W.), and Channing Division
of Network Medicine (E.K.S.), Brigham and Women’s Hospital, Harvard
Medical School, 15 Francis St, Boston, MA 02115; Department of Radiology,
University of California–San Diego, San Diego, Calif (A.Y., S.K.);
Division of Pulmonary Diseases and Critical Care, University of Texas–San
Antonio, San Antonio, Tex (D.J.M.); Department of Biomedical Sciences, Humanitas
University, Milan, Italy (S.A.); Respiratory Unit, IRCCS Humanitas Research
Hospital, Milan, Italy (S.A.); Department of Pulmonary Disease and Critical Care
Medicine, Mayo Clinic, Rochester, Minn (T.R.A.); and Department of Epidemiology,
Colorado School of Public Health, University of Colorado, Aurora, Colo (K.A.Y.,
G.L.K.)
| | - Andrew Tsao
- From the Division of Pulmonary and Critical Care Medicine (A.A.D.,
W.R.D., A.T., J.L.O., G.R.W.), Department of Radiology (P.N., Rubén San
José Estépar, Raúl San José Estépar),
Division of Sleep Medicine and Circadian Disorders (W.W.), and Channing Division
of Network Medicine (E.K.S.), Brigham and Women’s Hospital, Harvard
Medical School, 15 Francis St, Boston, MA 02115; Department of Radiology,
University of California–San Diego, San Diego, Calif (A.Y., S.K.);
Division of Pulmonary Diseases and Critical Care, University of Texas–San
Antonio, San Antonio, Tex (D.J.M.); Department of Biomedical Sciences, Humanitas
University, Milan, Italy (S.A.); Respiratory Unit, IRCCS Humanitas Research
Hospital, Milan, Italy (S.A.); Department of Pulmonary Disease and Critical Care
Medicine, Mayo Clinic, Rochester, Minn (T.R.A.); and Department of Epidemiology,
Colorado School of Public Health, University of Colorado, Aurora, Colo (K.A.Y.,
G.L.K.)
| | - José L. Orejas
- From the Division of Pulmonary and Critical Care Medicine (A.A.D.,
W.R.D., A.T., J.L.O., G.R.W.), Department of Radiology (P.N., Rubén San
José Estépar, Raúl San José Estépar),
Division of Sleep Medicine and Circadian Disorders (W.W.), and Channing Division
of Network Medicine (E.K.S.), Brigham and Women’s Hospital, Harvard
Medical School, 15 Francis St, Boston, MA 02115; Department of Radiology,
University of California–San Diego, San Diego, Calif (A.Y., S.K.);
Division of Pulmonary Diseases and Critical Care, University of Texas–San
Antonio, San Antonio, Tex (D.J.M.); Department of Biomedical Sciences, Humanitas
University, Milan, Italy (S.A.); Respiratory Unit, IRCCS Humanitas Research
Hospital, Milan, Italy (S.A.); Department of Pulmonary Disease and Critical Care
Medicine, Mayo Clinic, Rochester, Minn (T.R.A.); and Department of Epidemiology,
Colorado School of Public Health, University of Colorado, Aurora, Colo (K.A.Y.,
G.L.K.)
| | - Stefano Aliberti
- From the Division of Pulmonary and Critical Care Medicine (A.A.D.,
W.R.D., A.T., J.L.O., G.R.W.), Department of Radiology (P.N., Rubén San
José Estépar, Raúl San José Estépar),
Division of Sleep Medicine and Circadian Disorders (W.W.), and Channing Division
of Network Medicine (E.K.S.), Brigham and Women’s Hospital, Harvard
Medical School, 15 Francis St, Boston, MA 02115; Department of Radiology,
University of California–San Diego, San Diego, Calif (A.Y., S.K.);
Division of Pulmonary Diseases and Critical Care, University of Texas–San
Antonio, San Antonio, Tex (D.J.M.); Department of Biomedical Sciences, Humanitas
University, Milan, Italy (S.A.); Respiratory Unit, IRCCS Humanitas Research
Hospital, Milan, Italy (S.A.); Department of Pulmonary Disease and Critical Care
Medicine, Mayo Clinic, Rochester, Minn (T.R.A.); and Department of Epidemiology,
Colorado School of Public Health, University of Colorado, Aurora, Colo (K.A.Y.,
G.L.K.)
| | - Timothy R. Aksamit
- From the Division of Pulmonary and Critical Care Medicine (A.A.D.,
W.R.D., A.T., J.L.O., G.R.W.), Department of Radiology (P.N., Rubén San
José Estépar, Raúl San José Estépar),
Division of Sleep Medicine and Circadian Disorders (W.W.), and Channing Division
of Network Medicine (E.K.S.), Brigham and Women’s Hospital, Harvard
Medical School, 15 Francis St, Boston, MA 02115; Department of Radiology,
University of California–San Diego, San Diego, Calif (A.Y., S.K.);
Division of Pulmonary Diseases and Critical Care, University of Texas–San
Antonio, San Antonio, Tex (D.J.M.); Department of Biomedical Sciences, Humanitas
University, Milan, Italy (S.A.); Respiratory Unit, IRCCS Humanitas Research
Hospital, Milan, Italy (S.A.); Department of Pulmonary Disease and Critical Care
Medicine, Mayo Clinic, Rochester, Minn (T.R.A.); and Department of Epidemiology,
Colorado School of Public Health, University of Colorado, Aurora, Colo (K.A.Y.,
G.L.K.)
| | - Kendra A. Young
- From the Division of Pulmonary and Critical Care Medicine (A.A.D.,
W.R.D., A.T., J.L.O., G.R.W.), Department of Radiology (P.N., Rubén San
José Estépar, Raúl San José Estépar),
Division of Sleep Medicine and Circadian Disorders (W.W.), and Channing Division
of Network Medicine (E.K.S.), Brigham and Women’s Hospital, Harvard
Medical School, 15 Francis St, Boston, MA 02115; Department of Radiology,
University of California–San Diego, San Diego, Calif (A.Y., S.K.);
Division of Pulmonary Diseases and Critical Care, University of Texas–San
Antonio, San Antonio, Tex (D.J.M.); Department of Biomedical Sciences, Humanitas
University, Milan, Italy (S.A.); Respiratory Unit, IRCCS Humanitas Research
Hospital, Milan, Italy (S.A.); Department of Pulmonary Disease and Critical Care
Medicine, Mayo Clinic, Rochester, Minn (T.R.A.); and Department of Epidemiology,
Colorado School of Public Health, University of Colorado, Aurora, Colo (K.A.Y.,
G.L.K.)
| | - Gregory L. Kinney
- From the Division of Pulmonary and Critical Care Medicine (A.A.D.,
W.R.D., A.T., J.L.O., G.R.W.), Department of Radiology (P.N., Rubén San
José Estépar, Raúl San José Estépar),
Division of Sleep Medicine and Circadian Disorders (W.W.), and Channing Division
of Network Medicine (E.K.S.), Brigham and Women’s Hospital, Harvard
Medical School, 15 Francis St, Boston, MA 02115; Department of Radiology,
University of California–San Diego, San Diego, Calif (A.Y., S.K.);
Division of Pulmonary Diseases and Critical Care, University of Texas–San
Antonio, San Antonio, Tex (D.J.M.); Department of Biomedical Sciences, Humanitas
University, Milan, Italy (S.A.); Respiratory Unit, IRCCS Humanitas Research
Hospital, Milan, Italy (S.A.); Department of Pulmonary Disease and Critical Care
Medicine, Mayo Clinic, Rochester, Minn (T.R.A.); and Department of Epidemiology,
Colorado School of Public Health, University of Colorado, Aurora, Colo (K.A.Y.,
G.L.K.)
| | - George R. Washko
- From the Division of Pulmonary and Critical Care Medicine (A.A.D.,
W.R.D., A.T., J.L.O., G.R.W.), Department of Radiology (P.N., Rubén San
José Estépar, Raúl San José Estépar),
Division of Sleep Medicine and Circadian Disorders (W.W.), and Channing Division
of Network Medicine (E.K.S.), Brigham and Women’s Hospital, Harvard
Medical School, 15 Francis St, Boston, MA 02115; Department of Radiology,
University of California–San Diego, San Diego, Calif (A.Y., S.K.);
Division of Pulmonary Diseases and Critical Care, University of Texas–San
Antonio, San Antonio, Tex (D.J.M.); Department of Biomedical Sciences, Humanitas
University, Milan, Italy (S.A.); Respiratory Unit, IRCCS Humanitas Research
Hospital, Milan, Italy (S.A.); Department of Pulmonary Disease and Critical Care
Medicine, Mayo Clinic, Rochester, Minn (T.R.A.); and Department of Epidemiology,
Colorado School of Public Health, University of Colorado, Aurora, Colo (K.A.Y.,
G.L.K.)
| | - Edwin K. Silverman
- From the Division of Pulmonary and Critical Care Medicine (A.A.D.,
W.R.D., A.T., J.L.O., G.R.W.), Department of Radiology (P.N., Rubén San
José Estépar, Raúl San José Estépar),
Division of Sleep Medicine and Circadian Disorders (W.W.), and Channing Division
of Network Medicine (E.K.S.), Brigham and Women’s Hospital, Harvard
Medical School, 15 Francis St, Boston, MA 02115; Department of Radiology,
University of California–San Diego, San Diego, Calif (A.Y., S.K.);
Division of Pulmonary Diseases and Critical Care, University of Texas–San
Antonio, San Antonio, Tex (D.J.M.); Department of Biomedical Sciences, Humanitas
University, Milan, Italy (S.A.); Respiratory Unit, IRCCS Humanitas Research
Hospital, Milan, Italy (S.A.); Department of Pulmonary Disease and Critical Care
Medicine, Mayo Clinic, Rochester, Minn (T.R.A.); and Department of Epidemiology,
Colorado School of Public Health, University of Colorado, Aurora, Colo (K.A.Y.,
G.L.K.)
| | - Raúl San José Estépar
- From the Division of Pulmonary and Critical Care Medicine (A.A.D.,
W.R.D., A.T., J.L.O., G.R.W.), Department of Radiology (P.N., Rubén San
José Estépar, Raúl San José Estépar),
Division of Sleep Medicine and Circadian Disorders (W.W.), and Channing Division
of Network Medicine (E.K.S.), Brigham and Women’s Hospital, Harvard
Medical School, 15 Francis St, Boston, MA 02115; Department of Radiology,
University of California–San Diego, San Diego, Calif (A.Y., S.K.);
Division of Pulmonary Diseases and Critical Care, University of Texas–San
Antonio, San Antonio, Tex (D.J.M.); Department of Biomedical Sciences, Humanitas
University, Milan, Italy (S.A.); Respiratory Unit, IRCCS Humanitas Research
Hospital, Milan, Italy (S.A.); Department of Pulmonary Disease and Critical Care
Medicine, Mayo Clinic, Rochester, Minn (T.R.A.); and Department of Epidemiology,
Colorado School of Public Health, University of Colorado, Aurora, Colo (K.A.Y.,
G.L.K.)
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