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For: Le TN, Schumann U, Smith NA, Tiwari S, Au PCK, Zhu QH, Taylor JM, Kazan K, Llewellyn DJ, Zhang R, Dennis ES, Wang MB. DNA demethylases target promoter transposable elements to positively regulate stress responsive genes in Arabidopsis. Genome Biol 2014;15:458. [PMID: 25228471 PMCID: PMC4189188 DOI: 10.1186/s13059-014-0458-3] [Citation(s) in RCA: 168] [Impact Index Per Article: 16.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2014] [Accepted: 09/01/2014] [Indexed: 11/12/2022]  Open
Number Cited by Other Article(s)
1
Rao X, Yang S, Lü S, Yang P. DNA Methylation Dynamics in Response to Drought Stress in Crops. PLANTS (BASEL, SWITZERLAND) 2024;13:1977. [PMID: 39065503 PMCID: PMC11280950 DOI: 10.3390/plants13141977] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2024] [Revised: 07/15/2024] [Accepted: 07/17/2024] [Indexed: 07/28/2024]
2
Marquez-Molins J, Cheng J, Corell-Sierra J, Juarez-Gonzalez VT, Villalba-Bermell P, Annacondia ML, Gomez G, Martinez G. Hop stunt viroid infection induces heterochromatin reorganization. THE NEW PHYTOLOGIST 2024. [PMID: 39030826 DOI: 10.1111/nph.19986] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2024] [Accepted: 06/26/2024] [Indexed: 07/22/2024]
3
Silva GCB, Camillo LR, Santos DB, Amorim MS, Gonçalves LP, Barbosa ACO, Rocha Junior DS, Alcântara GM, Costa MGC. Identification of DEMETER-like DNA demethylase gene family in citrus and their role in drought stress-adaptive responses. Comput Biol Chem 2024;112:108128. [PMID: 38905900 DOI: 10.1016/j.compbiolchem.2024.108128] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2024] [Revised: 05/17/2024] [Accepted: 06/10/2024] [Indexed: 06/23/2024]
4
Cao S, Chen ZJ. Transgenerational epigenetic inheritance during plant evolution and breeding. TRENDS IN PLANT SCIENCE 2024:S1360-1385(24)00112-2. [PMID: 38806375 DOI: 10.1016/j.tplants.2024.04.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2024] [Revised: 04/12/2024] [Accepted: 04/25/2024] [Indexed: 05/30/2024]
5
Doddavarapu B, Lata C, Shah JM. Epigenetic regulation influenced by soil microbiota and nutrients: Paving road to epigenome editing in plants. Biochim Biophys Acta Gen Subj 2024;1868:130580. [PMID: 38325761 DOI: 10.1016/j.bbagen.2024.130580] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2023] [Revised: 12/25/2023] [Accepted: 02/02/2024] [Indexed: 02/09/2024]
6
Mierziak J, Wojtasik W. Epigenetic weapons of plants against fungal pathogens. BMC PLANT BIOLOGY 2024;24:175. [PMID: 38443788 PMCID: PMC10916060 DOI: 10.1186/s12870-024-04829-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2023] [Accepted: 02/16/2024] [Indexed: 03/07/2024]
7
Li L, Liu Z, Pan X, Yao K, Wang Y, Yang T, Huang G, Liao W, Wang C. Genome-Wide Identification and Characterization of Tomato Fatty Acid β-Oxidase Family Genes KAT and MFP. Int J Mol Sci 2024;25:2273. [PMID: 38396949 PMCID: PMC10889323 DOI: 10.3390/ijms25042273] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2024] [Revised: 02/08/2024] [Accepted: 02/12/2024] [Indexed: 02/25/2024]  Open
8
Badet T, Tralamazza SM, Feurtey A, Croll D. Recent reactivation of a pathogenicity-associated transposable element is associated with major chromosomal rearrangements in a fungal wheat pathogen. Nucleic Acids Res 2024;52:1226-1242. [PMID: 38142443 PMCID: PMC10853768 DOI: 10.1093/nar/gkad1214] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2023] [Revised: 11/30/2023] [Accepted: 12/11/2023] [Indexed: 12/26/2023]  Open
9
Abdulraheem MI, Xiong Y, Moshood AY, Cadenas-Pliego G, Zhang H, Hu J. Mechanisms of Plant Epigenetic Regulation in Response to Plant Stress: Recent Discoveries and Implications. PLANTS (BASEL, SWITZERLAND) 2024;13:163. [PMID: 38256717 PMCID: PMC10820249 DOI: 10.3390/plants13020163] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2023] [Revised: 01/04/2024] [Accepted: 01/05/2024] [Indexed: 01/24/2024]
10
Wu Y, Hou J, Ren R, Chen Z, Yue M, Li L, Hou H, Zheng X, Li L. DNA methylation and lipid metabolism are involved in GA-induced maize aleurone layers PCD as revealed by transcriptome analysis. BMC PLANT BIOLOGY 2023;23:584. [PMID: 37993774 PMCID: PMC10664605 DOI: 10.1186/s12870-023-04565-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Accepted: 10/27/2023] [Indexed: 11/24/2023]
11
Kumar S, Seem K, Kumar S, Singh A, Krishnan SG, Mohapatra T. DNA methylome analysis provides insights into gene regulatory mechanism for better performance of rice under fluctuating environmental conditions: epigenomics of adaptive plasticity. PLANTA 2023;259:4. [PMID: 37993704 DOI: 10.1007/s00425-023-04272-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2023] [Accepted: 10/20/2023] [Indexed: 11/24/2023]
12
Bonnet DMV, Tirot L, Grob S, Jullien PE. Methylome Response to Proteasome Inhibition by Pseudomonas syringae Virulence Factor Syringolin A. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2023;36:693-704. [PMID: 37414416 DOI: 10.1094/mpmi-06-23-0080-r] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/08/2023]
13
Williams CJ, Dai D, Tran KA, Monroe JG, Williams BP. Dynamic DNA methylation turnover in gene bodies is associated with enhanced gene expression plasticity in plants. Genome Biol 2023;24:227. [PMID: 37828516 PMCID: PMC10571256 DOI: 10.1186/s13059-023-03059-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2022] [Accepted: 09/14/2023] [Indexed: 10/14/2023]  Open
14
Hsieh JWA, Chang P, Kuang LY, Hsing YIC, Chen PY. Rice transformation treatments leave specific epigenome changes beyond tissue culture. PLANT PHYSIOLOGY 2023;193:1297-1312. [PMID: 37394940 PMCID: PMC10517251 DOI: 10.1093/plphys/kiad382] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2023] [Revised: 05/16/2023] [Accepted: 05/16/2023] [Indexed: 07/04/2023]
15
Xie SS, Duan CG. Epigenetic regulation of plant immunity: from chromatin codes to plant disease resistance. ABIOTECH 2023;4:124-139. [PMID: 37581024 PMCID: PMC10423193 DOI: 10.1007/s42994-023-00101-z] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/17/2023] [Accepted: 03/01/2023] [Indexed: 08/16/2023]
16
Jiang Y, Zhang S, Chen K, Xia X, Tao B, Kong W. Impacts of DNA methylases and demethylases on the methylation and expression of Arabidopsis ethylene signal pathway genes. Funct Integr Genomics 2023;23:143. [PMID: 37127698 DOI: 10.1007/s10142-023-01069-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2022] [Revised: 04/21/2023] [Accepted: 04/24/2023] [Indexed: 05/03/2023]
17
Bennett M, Hawk TE, Lopes-Caitar VS, Adams N, Rice JH, Hewezi T. Establishment and maintenance of DNA methylation in nematode feeding sites. FRONTIERS IN PLANT SCIENCE 2023;13:1111623. [PMID: 36704169 PMCID: PMC9873351 DOI: 10.3389/fpls.2022.1111623] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/29/2022] [Accepted: 12/07/2022] [Indexed: 06/18/2023]
18
Mapuranga J, Chang J, Yang W. Combating powdery mildew: Advances in molecular interactions between Blumeria graminis f. sp. tritici and wheat. FRONTIERS IN PLANT SCIENCE 2022;13:1102908. [PMID: 36589137 PMCID: PMC9800938 DOI: 10.3389/fpls.2022.1102908] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/19/2022] [Accepted: 12/07/2022] [Indexed: 06/17/2023]
19
Xiang R, Ahmad B, Liang C, Shi X, Yang L, Du G, Wang L. Systematic genome-wide and expression analysis of RNA-directed DNA methylation pathway genes in grapes predicts their involvement in multiple biological processes. FRONTIERS IN PLANT SCIENCE 2022;13:1089392. [PMID: 36570893 PMCID: PMC9780290 DOI: 10.3389/fpls.2022.1089392] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/04/2022] [Accepted: 11/25/2022] [Indexed: 06/17/2023]
20
Drozda A, Kurpisz B, Guan Y, Arasimowicz-Jelonek M, Plich J, Jagodzik P, Kuźnicki D, Floryszak-Wieczorek J. Insights into the expression of DNA (de)methylation genes responsive to nitric oxide signaling in potato resistance to late blight disease. FRONTIERS IN PLANT SCIENCE 2022;13:1033699. [PMID: 36618647 PMCID: PMC9815718 DOI: 10.3389/fpls.2022.1033699] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/31/2022] [Accepted: 11/08/2022] [Indexed: 06/17/2023]
21
Zhang H, Gong Z, Zhu JK. Active DNA demethylation in plants: 20 years of discovery and beyond. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2022;64:2217-2239. [PMID: 36478523 DOI: 10.1111/jipb.13423] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2022] [Accepted: 12/05/2022] [Indexed: 06/17/2023]
22
Silva AC, Ruiz‐Ferrer V, Müller SY, Pellegrin C, Abril‐Urías P, Martínez‐Gómez Á, Gómez‐Rojas A, Berenguer E, Testillano PS, Andrés MF, Fenoll C, Eves‐van den Akker S, Escobar C. The DNA methylation landscape of the root-knot nematode-induced pseudo-organ, the gall, in Arabidopsis, is dynamic, contrasting over time, and critically important for successful parasitism. THE NEW PHYTOLOGIST 2022;236:1888-1907. [PMID: 35872574 PMCID: PMC9825882 DOI: 10.1111/nph.18395] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/15/2021] [Accepted: 07/01/2022] [Indexed: 06/15/2023]
23
Xiang G, Fu Q, Li G, Liu R, Liu G, Yin X, Chen T, Xu Y. The cytosolic iron-sulphur cluster assembly mechanism in grapevine is one target of a virulent Crinkler effector from Plasmopara viticola. MOLECULAR PLANT PATHOLOGY 2022;23:1792-1806. [PMID: 36071584 PMCID: PMC9644279 DOI: 10.1111/mpp.13266] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/18/2022] [Revised: 07/25/2022] [Accepted: 08/17/2022] [Indexed: 06/15/2023]
24
Arora H, Singh RK, Sharma S, Sharma N, Panchal A, Das T, Prasad A, Prasad M. DNA methylation dynamics in response to abiotic and pathogen stress in plants. PLANT CELL REPORTS 2022;41:1931-1944. [PMID: 35833989 DOI: 10.1007/s00299-022-02901-x] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2022] [Accepted: 06/27/2022] [Indexed: 06/15/2023]
25
Sečnik A, Štajner N, Radišek S, Kunej U, Križman M, Jakše J. Cytosine Methylation in Genomic DNA and Characterization of DNA Methylases and Demethylases and Their Expression Profiles in Viroid-Infected Hop Plants (Humulus lupulus Var. 'Celeia'). Cells 2022;11:cells11162592. [PMID: 36010668 PMCID: PMC9406385 DOI: 10.3390/cells11162592] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2022] [Revised: 08/08/2022] [Accepted: 08/16/2022] [Indexed: 11/16/2022]  Open
26
Chen K, Shi Z, Zhang S, Wang Y, Xia X, Jiang Y, Gull S, Chen L, Guo H, Wu T, Zhang H, Liu J, Kong W. Methylation and Expression of Rice NLR Genes after Low Temperature Stress. Gene 2022;845:146830. [PMID: 35995119 DOI: 10.1016/j.gene.2022.146830] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2022] [Revised: 07/17/2022] [Accepted: 08/16/2022] [Indexed: 11/04/2022]
27
Wu X, Chai M, Liu J, Jiang X, Yang Y, Guo Y, Li Y, Cheng X. Turnip mosaic virus manipulates DRM2 expression to regulate host CHH and CHG methylation for robust infection. STRESS BIOLOGY 2022;2:29. [PMID: 37676449 PMCID: PMC10441925 DOI: 10.1007/s44154-022-00052-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2022] [Accepted: 07/12/2022] [Indexed: 09/08/2023]
28
De Kort H, Toivainen T, Van Nieuwerburgh F, Andrés J, Hytönen TP, Honnay O. Signatures of polygenic adaptation align with genome-wide methylation patterns in wild strawberry plants. THE NEW PHYTOLOGIST 2022;235:1501-1514. [PMID: 35575945 DOI: 10.1111/nph.18225] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2021] [Accepted: 04/29/2022] [Indexed: 06/15/2023]
29
A review on CRISPR/Cas-based epigenetic regulation in plants. Int J Biol Macromol 2022;219:1261-1271. [DOI: 10.1016/j.ijbiomac.2022.08.182] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2021] [Revised: 04/13/2022] [Accepted: 08/29/2022] [Indexed: 01/09/2023]
30
Lv S, Yang Y, Yu G, Peng L, Zheng S, Singh SK, Vílchez JI, Kaushal R, Zi H, Yi D, Wang Y, Luo S, Wu X, Zuo Z, Huang W, Liu R, Du J, Macho AP, Tang K, Zhang H. Dysfunction of histone demethylase IBM1 in Arabidopsis causes autoimmunity and reshapes the root microbiome. THE ISME JOURNAL 2022;16:2513-2524. [PMID: 35908110 PMCID: PMC9561531 DOI: 10.1038/s41396-022-01297-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/01/2022] [Revised: 07/09/2022] [Accepted: 07/13/2022] [Indexed: 11/25/2022]
31
Nucleotide mismatches prevent intrinsic self-silencing of hpRNA transgenes to enhance RNAi stability in plants. Nat Commun 2022;13:3926. [PMID: 35798725 PMCID: PMC9263138 DOI: 10.1038/s41467-022-31641-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2021] [Accepted: 06/27/2022] [Indexed: 11/10/2022]  Open
32
Petrova DV, Permyakova NV, Grin IR, Zharkov DO. Characterization of demethylating DNA glycosylase ROS1 from Nicotiana tabacum L. Vavilovskii Zhurnal Genet Selektsii 2022;26:341-348. [PMID: 35860677 PMCID: PMC9257373 DOI: 10.18699/vjgb-22-41] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2021] [Revised: 02/24/2022] [Accepted: 04/06/2022] [Indexed: 11/19/2022]  Open
33
Giordano A, Santo Domingo M, Quadrana L, Pujol M, Martín-Hernández AM, Garcia-Mas J. CRISPR/Cas9 gene editing uncovers the roles of CONSTITUTIVE TRIPLE RESPONSE 1 and REPRESSOR OF SILENCING 1 in melon fruit ripening and epigenetic regulation. JOURNAL OF EXPERIMENTAL BOTANY 2022;73:4022-4033. [PMID: 35394503 DOI: 10.1093/jxb/erac148] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2022] [Accepted: 04/06/2022] [Indexed: 05/14/2023]
34
Tirnaz S, Miyaji N, Takuno S, Bayer PE, Shimizu M, Akter MA, Edwards D, Batley J, Fujimoto R. Whole-Genome DNA Methylation Analysis in Brassica rapa subsp. perviridis in Response to Albugo candida Infection. FRONTIERS IN PLANT SCIENCE 2022;13:849358. [PMID: 35812966 PMCID: PMC9261781 DOI: 10.3389/fpls.2022.849358] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/06/2022] [Accepted: 05/16/2022] [Indexed: 06/15/2023]
35
Pereira G, Pereira J, Santos RB, Figueiredo A. Uncovering the role of DNA methyltransferases in grapevine - Plasmopara viticola interaction: From genome-wide characterization to global methylation patterns. Gene 2022;837:146693. [PMID: 35738444 DOI: 10.1016/j.gene.2022.146693] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2021] [Revised: 05/10/2022] [Accepted: 06/17/2022] [Indexed: 11/04/2022]
36
Saha D, Shaw AK, Datta S, Mitra J, Kar G. DNA hypomethylation is the plausible driver of heat stress adaptation in Linum usitatissimum. PHYSIOLOGIA PLANTARUM 2022;174:e13689. [PMID: 35462427 DOI: 10.1111/ppl.13689] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2022] [Revised: 03/31/2022] [Accepted: 04/18/2022] [Indexed: 06/14/2023]
37
Saeed F, Chaudhry UK, Bakhsh A, Raza A, Saeed Y, Bohra A, Varshney RK. Moving Beyond DNA Sequence to Improve Plant Stress Responses. Front Genet 2022;13:874648. [PMID: 35518351 PMCID: PMC9061961 DOI: 10.3389/fgene.2022.874648] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2022] [Accepted: 03/31/2022] [Indexed: 01/25/2023]  Open
38
Williams BP, Bechen LL, Pohlmann DA, Gehring M. Somatic DNA demethylation generates tissue-specific methylation states and impacts flowering time. THE PLANT CELL 2022;34:1189-1206. [PMID: 34954804 PMCID: PMC8972289 DOI: 10.1093/plcell/koab319] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/03/2021] [Accepted: 12/21/2021] [Indexed: 05/29/2023]
39
Soudani S, Poza-Carrión C, De la Cruz Gómez N, González-Coloma A, Andrés MF, Berrocal-Lobo M. Essential Oils Prime Epigenetic and Metabolomic Changes in Tomato Defense Against Fusarium oxysporum. FRONTIERS IN PLANT SCIENCE 2022;13:804104. [PMID: 35422834 PMCID: PMC9002333 DOI: 10.3389/fpls.2022.804104] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/10/2021] [Accepted: 02/07/2022] [Indexed: 05/10/2023]
40
Biotic stress-induced epigenetic changes and transgenerational memory in plants. Biologia (Bratisl) 2022. [DOI: 10.1007/s11756-022-01053-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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Huang M, Zhang Y, Wang Y, Xie J, Cheng J, Fu Y, Jiang D, Yu X, Li B. Active DNA demethylation regulates MAMP-triggered immune priming in Arabidopsis. J Genet Genomics 2022;49:796-809. [DOI: 10.1016/j.jgg.2022.02.021] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2021] [Revised: 02/09/2022] [Accepted: 02/15/2022] [Indexed: 12/13/2022]
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Wen YX, Wang JY, Zhu HH, Han GH, Huang RN, Huang L, Hong YG, Zheng SJ, Yang JL, Chen WW. Potential Role of Domains Rearranged Methyltransferase7 in Starch and Chlorophyll Metabolism to Regulate Leaf Senescence in Tomato. FRONTIERS IN PLANT SCIENCE 2022;13:836015. [PMID: 35211145 PMCID: PMC8860812 DOI: 10.3389/fpls.2022.836015] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/15/2021] [Accepted: 01/10/2022] [Indexed: 06/14/2023]
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De Rosa V, Falchi R, Peressotti A, Vizzotto G. Expression patterns of DEMETER-like DNA demethylases homologs hint at potential involvement in grapevine dormancy release. BIO WEB OF CONFERENCES 2022. [DOI: 10.1051/bioconf/20224404001] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
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Shim S, Lee HG, Park OS, Shin H, Lee K, Lee H, Huh JH, Seo PJ. Dynamic changes in DNA methylation occur in TE regions and affect cell proliferation during leaf-to-callus transition in Arabidopsis. Epigenetics 2022;17:41-58. [PMID: 33406971 PMCID: PMC8812807 DOI: 10.1080/15592294.2021.1872927] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2020] [Revised: 12/07/2020] [Accepted: 12/28/2020] [Indexed: 12/13/2022]  Open
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Tossi VE, Martínez Tosar LJ, Laino LE, Iannicelli J, Regalado JJ, Escandón AS, Baroli I, Causin HF, Pitta-Álvarez SI. Impact of polyploidy on plant tolerance to abiotic and biotic stresses. FRONTIERS IN PLANT SCIENCE 2022;13:869423. [PMID: 36072313 PMCID: PMC9441891 DOI: 10.3389/fpls.2022.869423] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/04/2022] [Accepted: 07/25/2022] [Indexed: 05/04/2023]
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Ma Y, Chhapekar SS, Lu L, Yu X, Kim S, Lee SM, Gan TH, Choi GJ, Lim YP, Choi SR. QTL mapping for Fusarium wilt resistance based on the whole-genome resequencing and their association with functional genes in Raphanus sativus. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2021;134:3925-3940. [PMID: 34387712 DOI: 10.1007/s00122-021-03937-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/04/2021] [Accepted: 08/03/2021] [Indexed: 06/13/2023]
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Drosou V, Kapazoglou A, Letsiou S, Tsaftaris AS, Argiriou A. Drought induces variation in the DNA methylation status of the barley HvDME promoter. JOURNAL OF PLANT RESEARCH 2021;134:1351-1362. [PMID: 34510287 DOI: 10.1007/s10265-021-01342-z] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/21/2021] [Accepted: 08/31/2021] [Indexed: 06/13/2023]
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The Dynamism of Transposon Methylation for Plant Development and Stress Adaptation. Int J Mol Sci 2021;22:ijms222111387. [PMID: 34768817 PMCID: PMC8583499 DOI: 10.3390/ijms222111387] [Citation(s) in RCA: 29] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2021] [Revised: 10/13/2021] [Accepted: 10/19/2021] [Indexed: 02/06/2023]  Open
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Lloyd JPB, Lister R. Epigenome plasticity in plants. Nat Rev Genet 2021;23:55-68. [PMID: 34526697 DOI: 10.1038/s41576-021-00407-y] [Citation(s) in RCA: 57] [Impact Index Per Article: 19.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/26/2021] [Indexed: 01/29/2023]
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Bennett M, Cleaves K, Hewezi T. Expression Patterns of DNA Methylation and Demethylation Genes during Plant Development and in Response to Phytohormones. Int J Mol Sci 2021;22:ijms22189681. [PMID: 34575855 PMCID: PMC8470644 DOI: 10.3390/ijms22189681] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2021] [Revised: 09/02/2021] [Accepted: 09/06/2021] [Indexed: 01/02/2023]  Open
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