Uniconazole-induced starch accumulation in the bioenergy crop duckweed (Landoltia punctata) I: transcriptome analysis of the effects of uniconazole on chlorophyll and endogenous hormone biosynthesis

Transcriptomic and physiological analysis of the response of Spirodela polyrrhiza to sodium nitroprusside

BACKGROUND

Spirodela polyrrhiza is a simple floating aquatic plant with great potential in synthetic biology. Sodium nitroprusside (SNP) stimulates plant development and increases the biomass and flavonoid content in some plants. However, the molecular mechanism of SNP action is still unclear.

RESULTS

To determine the effect of SNP on growth and metabolic flux in S. polyrrhiza, the plants were treated with different concentrations of SNP. Our results showed an inhibition of growth, an increase in starch, soluble protein, and flavonoid contents, and enhanced antioxidant enzyme activity in plants after 0.025 mM SNP treatment. Differentially expressed transcripts were analysed in S. polyrrhiza after 0.025 mM SNP treatment. A total of 2776 differentially expressed genes (1425 upregulated and 1351 downregulated) were identified. The expression of some genes related to flavonoid biosynthesis and NO biosynthesis was upregulated, while the expression of some photosynthesis-related genes was downregulated. Moreover, SNP stress also significantly influenced the expression of transcription factors (TFs), such as ERF, BHLH, NAC, and WRKY TFs.

CONCLUSIONS

Taken together, these findings provide novel insights into the mechanisms of underlying the SNP stress response in S. polyrrhiza and show that the metabolic flux of fixed CO2 is redirected into the starch synthesis and flavonoid biosynthesis pathways after SNP treatment.

Transcriptomic and metabolomic analyses reveal the mechanism of uniconazole inducing hypocotyl dwarfing by suppressing BrbZIP39-BrPAL4 module mediating lignin biosynthesis in flowering Chinese cabbage

Uniconazole, a triazole plant growth regulator, is widely used to regulate plant height and prevent the overgrowth of seedlings. However, the underlying molecular mechanism of uniconazole in inhibiting the hypocotyl elongation of seedlings is still largely unclear, and there has been little research on the integration of transcriptomic and metabolomic data to investigate the mechanisms of hypocotyl elonga-tion. Herein we observed that the hypocotyl elongation of flowering Chinese cabbage seedings was significantly inhibited by uniconazole. Interestingly, based on combined transcriptome and metabolome analyses, we found that the "phenylpropanoid biosynthesis" pathway was significantly affected by uniconazole. In this pathway, only one member of the portal enzyme gene family, named BrPAL4, was remarkably downregulated, which was related to lignin biosynthesis. Furthermore, the yeast one-hybrid and dual-luciferase assays showed that BrbZIP39 could directly bind to the promoter region of BrPAL4 and activate its transcript. The virus-induced gene silencing system further demonstrated that BrbZIP39 could positively regulate hypocotyl elongation and the lignin biosynthesis of hypocotyl. Our findings provide a novel insight into the molecular regulatory mechanism of uniconazole inhibiting hypocotyl elongation in flowering Chinese cabbage and confirm, for the first time, that uniconazole decreases lignin content through repressing the BrbZIP39-BrPAL4 module-mediated phenylpropanoid biosynthesis, which leads to the hypocotyl dwarfing of flowering Chinese cabbage seedlings.

Effects of various spectral compositions on micro-polluted water purification and biofuel feedstock production using duckweed

The purification of micro-polluted water for drinking water can play an important role in solving water crisis. To investigate the effects of spectral composition on nutrient removal and biofuel feedstock production using duckweed, Landoltia punctata was cultivated in different spectral compositions in micro-polluted water. Results showed that the nitrogen and phosphorus removal efficiency were 99.4% and 93.5% at an recommended red and blue light photon intensity mixture ratio of 2:1. Meanwhile, maximum growth rate of duckweed (11.37 g/m2/day) was observed at red/blue = 2:1. In addition, maximum starch accumulation rate of duckweed was found to be 6.12 g/m2/day, with starch content of 36.63% at red/blue = 4:1, which was three times higher when compared to that of white light. Moreover, the recommended ratio of red and blue light was validated by economic efficiency analysis of energy consumptions. These findings provide a sustainable environmental restoration method to transform water micro-pollutants to available substances.

Transcriptomic analysis of Vigna radiata in response to chilling stress and uniconazole application

Background

Chilling injury of mung bean (Vigna radiata (L.)) during the blooming and podding stages is a major agricultural threat in Northeast China. Uniconazole (UNZ) can alleviate water deficit stress in soybean and waterlogging stress in mung bean. However, there has been no report on the effect of UNZ application on the growth and transcriptomic profile of mung bean under chilling stress.

Results

UNZ application before chilling stress at the R1 stage alleviated the decline in mung bean yield. UNZ delayed the decrease in leaf chlorophyll content under chilling stress at the R1 stage and accelerated the increase in leaf chlorophyll content during the recovery period. Eighteen separate RNA-Seq libraries were generated from RNA samples collected from leaves exposed to six different treatment schemes. The numbers of DEGs specific for UNZ treatment between D1 + S vs. D1 and D4 + S vs. D4 were 708 and 810, respectively. GO annotations showed that photosynthesis genes were obviously enriched among the genes affected by chilling stress and UNZ application. KEGG pathway enrichment analysis indicated that 4 pathways (cutin, suberin and wax biosynthesis; photosynthesis; porphyrin and chlorophyll metabolism; and ribosome) were downregulated, while plant–pathogen interaction was upregulated, by chilling stress. UNZ application effectively prevented the further downregulation of the gene expression of members of these 4 KEGG pathways under chilling stress.

Conclusions

UNZ application effectively delayed the decrease in photosynthetic pigment content under chilling stress and accelerated the increase in photosynthetic pigment content during the recovery period, thus effectively limiting the decline in mung bean yield. UNZ application effectively prevented the further downregulation of the gene expression of members of 4 KEGG pathways under chilling stress and increased mung bean tolerance to chilling stress.

Supplementary Information

The online version contains supplementary material available at 10.1186/s12864-022-08443-6.

Characterization of Various Subunit Combinations of ADP-Glucose Pyrophosphorylase in Duckweed (Landoltia punctata)

Background

Landoltia punctata can be used as renewable and sustainable biofuel feedstock because it can quickly accumulate high starch levels. ADP-glucose pyrophosphorylase (AGPase) catalyzes the first committed step during starch biosynthesis in higher plants. The heterotetrameric structure of plant AGPases comprises pairs of large subunits (LSs) and small subunits (SSs). Although several studies have reported on the high starch accumulation capacity of duckweed, no study has explored the underlying molecular accumulation mechanisms and their linkage with AGPase. Therefore, this study focused on characterizing the roles of different L. punctate AGPases. Methodology. Expression patterns of LpAGPs were determined through comparative transcriptome analyses, followed by coexpressing their coding sequences in Escherichia coli, Saccharomyces cerevisiae, Arabidopsis thaliana, and Nicotiana tabacum.

Results

Comparative transcriptome analyses showed that there are five AGPase subunits encoding cDNAs in L. punctata (LpAGPS1, LpAGPS2, LpAGPL1, LpAGPL2, and LpAGPL3). Nutrient starvation (distilled water treatment) significantly upregulated the expression of LpAGPS1, LpAGPL2, and LpAGPL3. Coexpression of LpAGPSs and LpAGPLs in Escherichia coli generated six heterotetramers, but only four (LpAGPS1/LpAGPL3, LpAGPS2/LpAGPL1, LpAGPS2/LpAGPL2, and LpAGPS2/LpAGPL3) exhibited AGPase activities and displayed a brownish coloration upon exposure to iodine staining. Yeast two-hybrid and bimolecular fluorescence complementation (BiFC) assays validated the interactions between LpAGPS1/LpAGPL2, LpAGPS1/LpAGPL3, LpAGPS2/LpAGPL1, LpAGPS2/LpAGPL2, and LpAGPS2/LpAGPL3. All the five LpAGPs were fusion-expressed with hGFP in Arabidopsis protoplasts, and their green fluorescence signals were uniformly localized in the chloroplast, indicating that they are plastid proteins.

Conclusions

This study uncovered the cDNA sequences, structures, subunit interactions, expression patterns, and subcellular localization of AGPase. Collectively, these findings provide new insights into the molecular mechanism of fast starch accumulation in L. punctata.

Accumulation of starch in duckweeds (Lemnaceae), potential energy plants

Starch can accumulate in both actively growing vegetative fronds and over-wintering propagules, or turions of duckweeds, small floating aquatic plants belonging to the family of the Lemnaceae. The starch synthesizing potential of 36 duckweed species varies enormously, and the starch contents actually occurring in the duckweed tissues are determined by growth conditions, various types of stress and the action of growth regulators. The present review examines the effects of phytohormones and growth retardants, heavy metals, nutrient deficiency and salinity on the accumulation of starch in duckweeds with a view to obtaining high yields of starch as a feedstock for biofuel production. Biotechnological approaches to degrading duckweed starch to its component sugars and the fermentation of these sugars to bio-alcohols are also discussed.

Physiological and transcriptome analyses for assessing the effects of exogenous uniconazole on drought tolerance in hemp (Cannabis sativa L.)

Uniconazole (S-(+)-uniconazole), a plant growth retardant, exerts key roles in modulating growth and development and increasing abiotic stress tolerance in plants. However, the underlying mechanisms by which uniconazole regulates drought response remain largely unknown. Here, the effects of exogenous uniconazole on drought tolerance in hemp were studied via physiological and transcriptome analyses of the drought-sensitive industrial hemp cultivar Hanma No. 2 grown under drought stress. Exogenous uniconazole treatment increased hemp tolerance to drought-induced damage by enhancing chlorophyll content and photosynthesis capacity, regulating activities of enzymes involved in carbon and nitrogen metabolism, and altering endogenous hormone levels. Expression of genes associated with porphyrin and chlorophyll metabolism, photosynthesis-antenna proteins, photosynthesis, starch and sucrose metabolism, nitrogen metabolism, and plant hormone signal transduction were significantly regulated by uniconazole compared with that by control (distilled water) under drought stress. Numerous genes were differentially expressed to increase chlorophyll content, enhance photosynthesis, regulate carbon-nitrogen metabolism-related enzyme activities, and alter endogenous hormone levels. Thus, uniconazole regulated physiological and molecular characteristics of photosynthesis, carbon-nitrogen metabolism, and plant hormone signal transduction to enhance drought resistance in industrial hemp.

The potential of tebuconazole for mitigating oxidative stress caused by limited irrigation and improving sugar yield and root quality traits in sugar beet

Water deficit is the main reason for sugar yield losses in semi-arid areas. Triazole derivatives may mitigate the harmful impacts of water stress. Therefore, this study aimed to assess the effect of tebuconazole (TEB) application on antioxidants, root quality traits, and sugar yield under drought stress conditions. The treatments included three levels of irrigation set according to crop evapotranspiration (ET_C): 100%, 75%, and 50% ET_C, as well as three levels of TEB (0, 25, and 50 mg L^-1). While significantly increasing antioxidant and alpha-amino-nitrogen (α-amino-N) contents, limited irrigation decreased total chlorophyll content, net photosynthesis rate, leaf relative water content, the weight of roots, and sugar yield. In contrast, TEB treatment resulted in a marked rise in all biological and physiological traits as well as enzymatic antioxidants. Our findings indicated that the decline in α-amino-N content might be linked to increased NR activity in response to the TEB application. Our results also showed that the stress-ameliorating role of TEB cannot be associated with the increase of flavonols (quercetin and rutin). Overall, the results demonstrated that TEB has a high potential for ameliorating the negative impacts of limited irrigation.

Morphogenesis, pigment content, phytohormones and productivity of sweet pepper under the action of gibberellin and tebuconazole

One of the main tasks of modern plant physiology is regulation of growth and development of cultivated plants in order to optimize the productive process. The attention of the scientific community is focused on the use of natural activators and growth inhibitors. We investigated the effect of foliar treatment with 0.005% solution of gibberellic acid (GA3) and 0.025% solution of the antigibberellic preparation tebuconazole (EW-250) on morphogenesis, leaf mesostructure, the content of photosynthetic pigments, the balance of endogenous phytohormones and productivity of Capsicum annuum L., Antey variety. The vegetation experiment was carried out in the conditions of soil-sand culture in vessels with a volume of 10 L. Treatment of plants was carried out in the budding phase. Morphometric parameters were determined every 10 days. The mesostructure of the middle tier leaves was studied in the fruit formation phase, and the chlorophyll content was determined in the raw material by spectrophotometric method. Analytical determination of endogenous phytohormones – indolyl-3-acetic (IAA), gibberellic (GA3) and abscisic (ABA) acids and cytokinins – zeatin (Z), zeatin-O-glucoside (ZG), zeatinribozide (ZR), isopentenyladenine (iP) and isopentenyladenosine (iPA) were performed by high performance liquid chromatography – mass spectrometry (HPLC-MS). With GA3 treatment, plant height increased considerably, while with EW-250, it decreased. Both regulators led to an increase in the number of leaves on the plant, the leaf raw biomass, stems and roots and the dry matter of the whole plant, the area of a single leaf blade and the total area of leaves on the plant. Under the action of EW-250, the chlorophyll content in the leaves surged, while under the action of GA3 it tended to decrease or did not change at all. Both regulators thickened the chlorenchyma and boosted the volume of the columnar parenchyma cells. GA3 treatment induced a rise in the thickness of the upper and lower epidermis, and EW-250 led, on the contrary, to a decrease. It is shown that after treatment with exogenous GA3, the content of endogenous IAA and ABA decreased and GA3 in plant stems increased. Instead, EW-250 caused a decrease in the levels of GA3, IAA and ABA in the stems. Exogenous GA3 enhanced the accumulation of endogenous GA3 and IAA and inhibited ABA in the leaves. Under the action of the retardant, the level of ABA in the leaves did not change, while GA3 and IAA decreased. Treatment of plants with the studied growth regulators caused a decrease in the pool of cytokinins (CK) in stems. EW-250 showed a significant rise in the hormone content in the leaves. After spraying with GA3 solution, the level of ZG, Z and ZR grew. Under the action of the retardant, the increase in the CK pool occurred exclusively due to the iP. Growth regulators optimized the productivity of sweet pepper plants: under the action of GA3 there was an increase in the number of fruits per plant, and after the use of EW-250 there was a rise in the average weight of one fruit. The obtained results showed that anatomical-morphological and structural-functional rearrangements of sweet pepper plants under the action of exogenous gibberellic acid and EW-250 took place against the background of changes in the balance and distribution of endogenous hormones. Increased photosynthetic activity, stimulation of growth processes of some plant organs and inhibition of others enlarged biological productivity of the culture.

Hormonal changes with uniconazole trigger canopy apparent photosynthesis and grain filling in wheat crop in a semi-arid climate

Phytohormones are important for the growth and development of plants. The objective of the experiment was to investigate the effect of foliar application of uniconazole (UCZ) at the four-leaf stage on hormone crosstalk and production of winter wheat. An experiment was carried out during 2015-2016 and 2016-2017 growth season in a semi-arid region, where UCZ at a concentration of 0 (CK, distilled water), 15 (FU₁₅), 30 (FU₃₀), and 45 (FU₄₅) mg L^-1 were sprayed on wheat crop at the four-leaf stage at a rate of 138.8 mL m^-2. UCZ alters the endogenous hormone contents in flag leaves and in grains. UCZ inhibited gibberellic acid (GA) in flag leaves and in grains where the lower GA with UCZ improved the zeatin + zeatin riboside (Z + ZR) and abscisic acid (ABA) contents. The lower GA and higher Z + ZR and ABA contents with UCZ-treated plants improved the chlorophyll content and canopy apparent photosynthesis (CAP) as well as the grain-filling characteristics. The Z + ZR and ABA in flag leaves were positively correlated with chlorophyll content and CAP value while negatively with GA. Moreover, the Z + ZR and ABA were positively correlated with maximum grain weight, mean grain-filling rate, and maximum grain-filling rate, while negatively with GA level. Treatment FU₃₀ significantly improved the chlorophyll content, CAP value, spike weight, grain-filling characteristics, and hormone contents of Z + ZR and ABA while it decreased the GA level. The hormone crosstalk with UCZ significantly increased the yield of wheat crop, where FU₃₀ treatment performs better.

Morphogenesis, pigment content, phytohormones and productivity of eggplants under the action of gibberellin and tebuconazole

Regulation of growth and development of cultivated plants in order to optimize the production process is one of the main objectives of modern plant physiology. Both activators and growth inhibitors are used for this purpose. The effect of foliar treatment with 0.005% solution of gibberellic acid and 0.025% solution of antigibberellic preparation of tebuconazole on the morphogenesis, leaf structure, photosynthetic pigment content, balance of phytohormones and eggplant productivity cv. Diamond variety was investigated. The treatment with the preparations was carried out in the budding phase. The vegetation experiment was laid under soil and sand culture in vessels of a ten-liter capacity. The morphometric parameters were determined every 10 days, the mesostructure was studied in the leaves of the middle tier in the phase of fruit formation, chlorophyll content was measured in the raw material by spect­rophotometric method. Analytical determination of phytohormones (indole-3-acetic acid, gibberellic, abscisic acids and cytokinins – zeatin, zeatin-O-glucoside, zeatinriboside, isopentenyladenine and isopentenyladenosine) was performed by high performance liquid chromatography. Under the action of gibberellic acid, plant height increased significantly, and it decreased after its treatment with tebuconazole. The stimulator and inhibitor increased the number of leaves per plant, the weight of the leaf dry matter, the area of the individual leaf blade and the area of leaves per plant. Both preparations increased the weight of the raw material of the stems and roots, as well as the mass of dry matter of the whole plant. Under the action of tebuconazole, the content of chlorophylls in the leaves increased, while under the action of gibberellic acid it decreased. After treatment with gibberellic acid and tebuconazole, the thickness of the leaf blade increased due to chlorenchyma thickening. In the variant with gibberellic acid, the thickness of upper and lower epidermis increased, and in the variant with tebuconazole, these parameters decreased. Both growth regulators increased the volume of cells of the columnar parenchyma. The contet of endogenous gibberellic, indole-3-acetic and abscisic acids of the stems and especially in the leaves increased with the treatment of exogenous gibberellic acid, whereas after the application of tebuconazole the gibberellic and indole-3-acetic acid content of the stems decreased significantly and practically decreased to traces. Instead, the amount of abscisic acid increased. After treatment with exogenous gibberellic acid, the pool of cytokinins in the leaves significantly decreased. The inactive isoforms of the hormone zeatin-O-glucoside and isopentenyladenosine dominated in the stems. The effect of tebuconazole decreased the pool of cytokinins in the stems and increased in the leaves. In general, due to the multidirectional action, growth regulators positively influenced the elements of eggplant productivity. More effective was the retardant – tebuconazole. Therefore, the anatomic-morphological and structural-functional rearrangements in eggplants under the effects of exogenous gibberellic acid and tebuconazole are due to changes in the balance and distribution of endogenous hormones. Increased photosynthetic activity, stimulation of growth processes of some organs of the plant and inhibition of others enlarged the biological productivity of the culture.

Root-tip cutting and uniconazole treatment improve the colonization rate of Tuber indicum on Pinus armandii seedlings in the greenhouse

The Chinese black truffle Tuber indicum is commercially valuable. The main factors influencing the success or failure of a truffle crop include the mycorrhizal colonization rate and host plant quality. The effects of a plant growth regulator (uniconazole) and plant growth management technique (root‐tip cutting) on T. indicum colonization rate and Pinus armandii seedling growth were assessed under greenhouse conditions. The results indicated that 10 mg l⁻¹ uniconazole or the combination of 5 mg l⁻¹ uniconazole and root‐tip cutting constitutes an effective method for ectomycorrhizal synthesis based on an overall evaluation of colonization rate, plant biomass, plant height, root weight, stem circumference and antioxidant enzyme activities (SOD and POD) of P. armandii. The abundance of Proteobacteria in the rhizosphere of colonized seedlings might serve as an indicator of stable mycorrhizal colonization. This research inspires the potential application of uniconazole and root‐tip cutting treatments for mycorrhizal synthesis and truffle cultivation.

Physiological and transcriptome analyses of photosynthesis and chlorophyll metabolism in variegated Citrus (Shiranuhi and Huangguogan) seedlings

Citrus species are among the most economically important fruit crops. Physiological characteristics and molecular mechanisms associated with de-etiolation have been partially revealed. However, little is known about the mechanisms controlling the expression and function of genes associated with photosynthesis and chlorophyll biosynthesis in variegated citrus seedlings. The lower biomass, chlorophyll contents, and photosynthetic parameter values recorded for the variegated seedlings suggested that chlorophyll biosynthesis was partially inhibited. Additionally, roots of the variegated seedlings were longer than the roots of green seedlings. We obtained 567.07 million clean reads and 85.05 Gb of RNA-sequencing data, with more than 94.19% of the reads having a quality score of Q30 (sequencing error rate = 0.1%). Furthermore, we detected 4,786 and 7,007 differentially expressed genes (DEGs) between variegated and green Shiranuhi and Huangguogan seedlings. Thirty common pathways were differentially regulated, including pathways related to photosynthesis (GO: 0015979) and the chloroplast (GO: 0009507). Photosynthesis (44 and 63 DEGs), photosynthesis-antenna proteins (14 and 29 DEGs), and flavonoid biosynthesis (16 and 29 DEGs) pathways were the most common KEGG pathways detected in two analyzed libraries. Differences in the expression patterns of PsbQ, PetF, PetB, PsaA, PsaN, PsbP, PsaF, Cluster-2274.8338 (ZIP1), Cluster-2274.38688 (PTC52), and Cluster-2274.78784 might be responsible for the variegation in citrus seedlings. We completed a physiological- and transcriptome-level comparison of the Shiranuhi and Huangguogan cultivars that differ in terms of seedling variegation. We performed mRNA-seq analyses of variegated and green Shiranuhi and Huangguogan seedlings to explore the genes and regulatory pathways involved in the inhibition of chlorophyll biosynthesis and decreases in Chl a and Chl b contents. The candidate genes described herein should be investigated in greater detail to further characterize variegated citrus seedlings.

Differential effects of synthetic media on long-term growth, starch accumulation and transcription of ADP-glucosepyrophosphorylase subunit genes in Landoltia punctata

Murashige & Skoog (MS) and Hoagland's media were previously used for in vitro culture of Landoltia punctata. During subsequent ex vitro culture, the use of MS medium resulted in a higher growth rate, compared to Hoagland's medium. Thus, a higher starch content of L. punctata in MS medium was previously hypothesized. Here, L. punctata strain 5632 was isolated and characterized using morphological characteristics and the atpF-atpH intergenic region. During early cultivation stage, fresh weight and relative growth rate in MS medium were lower than Hoagland's medium. Conversely, starch content in MS medium was considerably higher than in Hoagland's medium. Medium effects on expression of genes coding for starch-biosynthesis ADP-glucosepyrophosphorylase (AGPase) were determined. Genomic fragments of small (LeAPS) and large (LeAPL1) AGPase subunits were characterized. Differential expression between each AGPase subunit genes was observed in both media. Additionally, in MS medium, the highest correlation coefficients between starch content and gene expression was found with LeAPS (0.81) and followed by LeAPL3 (0.67), LeAPL2 (0.65) and LeAPL1 (0.28). In Hoagland's medium, the coefficients of LeAPL3 (0.83) and LeAPL2 (0.62) were higher than LeAPS (0.18) and LeAPL1 (-0.62). This suggested different levels of contributions of these genes in starch biosynthesis in both media.

Physiological and Transcriptomic Analysis Reveals Distorted Ion Homeostasis and Responses in the Freshwater Plant Spirodela polyrhiza L. under Salt Stress

Duckweeds are a family of freshwater angiosperms with morphology reduced to fronds and propagation by vegetative budding. Unlike other angiosperm plants such as Arabidopsis and rice that have physical barriers between their photosynthetic organs and soils, the photosynthetic organs of duckweeds face directly to their nutrient suppliers (waters), therefore, their responses to salinity may be distinct. In this research, we found that the duckweed Spirodela polyrhiza L. accumulated high content of sodium and reduced potassium and calcium contents in large amounts under salt stress. Fresh weight, Rubisco and AGPase activities, and starch content were significantly decreaseded in the first day but recovered gradually in the following days and accumulated more starch than control from Day 3 to Day 5 when treated with 100 mM and 150 mM NaCl. A total of 2156 differentially expressed genes were identified. Overall, the genes related to ethylene metabolism, major CHO degradation, lipid degradation, N-metabolism, secondary metabolism of flavonoids, and abiotic stress were significantly increased, while those involved in cell cycle and organization, cell wall, mitochondrial electron transport of ATP synthesis, light reaction of photosynthesis, auxin metabolism, and tetrapyrrole synthesis were greatly inhibited. Moreover, salt stress also significantly influenced the expression of transcription factors that are mainly involved in abiotic stress and cell differentiation. However, most of the osmosensing calcium antiporters (OSCA) and the potassium inward channels were downregulated, Na⁺/H⁺ antiporters (SOS1 and NHX) and a Na⁺/Ca²⁺ exchanger were slightly upregulated, but most of them did not respond significantly to salt stress. These results indicated that the ion homeostasis was strongly disturbed. Finally, the shared and distinct regulatory networks of salt stress responses between duckweeds and other plants were intensively discussed. Taken together, these findings provide novel insights into the underlying mechanisms of salt stress response in duckweeds, and can be served as a useful foundation for salt tolerance improvement of duckweeds for the application in salinity conditions.

Duckweed biomarkers for identifying toxic water contaminants?

Surface or ground waters can be contaminated with numerous toxic substances. The duckweeds Lemna minor and Lemna gibba are widely used for assaying waterborne toxicity to higher plants in terms of growth inhibition and photosynthetic pigment reduction. These tests cannot, however, in themselves determine the nature of the agents responsible for toxicity. Morphological, developmental, physiological, biochemical, and genetic responses of duckweeds to exposure to toxic water contaminants constitute biomarkers of toxic effect. In principle, the very detection of these biomarkers should enable the contaminants having elicited them (and being responsible for the toxicity) to be identified. However, in practice, this is severely compromised by insufficient specificity of biomarkers for their corresponding toxicants and by the lack of documentation of biomarker/toxin relationships. The present contribution illustrates the difficulties of using known water contaminant-related duckweed biomarkers to identify toxins, and discusses possibilities for achieving this goal.

Seed filling in maize and hormones crosstalk regulated by exogenous application of uniconazole in semiarid regions

In semiarid regions, deficit and unpredictable precipitation results in yield losses. Uniconazole is a plant growth regulator and its application is beneficial in water saving agriculture and improves maize production in semiarid regions. In order to determine the effects of uniconazole application on seed filling and hormonal changes of maize, a field study was conducted in the summer of 2015 and 2016. Seeds were soaked in uniconazole at concentration of 0 (SCK), 25 (S₂₅), 50 (S₅₀), and 75 (S₇₅) mg kg^-1, while in the second experiment, uniconazole was applied to the foliage at concentration of 0 (FCK), 25 (F₂₅), 50 (F₅₀), and 75 (F₇₅) mg L^-1 at the eight-leaf. Uniconazole application significantly improves the seed filling rates by regulating the endogenous hormones contents. Uniconazole seed soaking treatments improved significantly the seed filling rate of superior, middle, and inferior seeds compared with foliar application treatments. Uniconazole improved significantly the zeatin (Z) + zeatin riboside (ZR) and abscisic acid (ABA) contents while reducing the gibberellic acid (GA) content in the seeds during the process of seed filling. The Z + ZR and ABA contents were significantly positively correlated while the GA content was negatively correlated with maximum seed weight, maximum seed filling rates, and mean seed filling rates. Treatments S₂₅ and F₂₅ significantly improved the above dry matter accumulation plant^-1, seed filling rates, ABA, Z + ZR contents, characters of ear, and grain yield while reduced the GA content. It is concluded from our results that the uniconazole application at concentration of 25 mg kg^-1 as seed soaking or 25 mg L^-1 foliar applied at the eight-leaf stage is beneficial to improve the seed filling rates and grain yield of maize in semiarid regions.

Improving biomass and starch accumulation of bioenergy crop duckweed (Landoltia punctata) by abscisic acid application

Duckweed is a valuable feedstock for bioethanol production due to its high biomass and starch accumulation. In our preliminary experiment, we found that abscisic acid (ABA) could simultaneously increase starch and biomass accumulation of duckweed, but the mechanisms are still unclear. The results showed that the biomass production of duckweed reached up to 59.70 and 63.93 g m⁻² in 6 days, respectively, with an increase of 7% (P < 0.05) compared to the control. The starch percentage increased from 2.29% up to 46.18% after 14 days of treatment, with a total of starch level 2.6-fold higher than that of the control. Moreover, the level of endogenous ABA, zeatin-riboside (ZR) and indole-3-acetic acid (IAA) increased, while gibberellins (GAs) decreased. Notably, ABA content in treated samples reached 336.5 mg/kg (fresh weight), which was 7.5-fold greater than that of the control. Importantly, the enzyme activities involved in starch biosynthesis increased while those catalyzing starch degradation decreased after ABA application. Taken together, these results indicated that ABA can promote biomass and starch accumulation by regulating endogenous hormone levels and the activity of starch metabolism related key enzymes. These results will provide an operable method for high starch accumulation in duckweed for biofuels production.

Flower induction, microscope-aided cross-pollination, and seed production in the duckweed Lemna gibba with discovery of a male-sterile clone

Duckweed species have a great potential to develop into fast-growing crops for water remediation and bioenergy production. Seed production and utilization of hybrid vigour are essential steps in this process. However, even in the extensively-studied duckweed species, Lemna gibba, flower primordia were often aborted prior to maturation. Salicylic acid (SA) and agar solidification of the medium promoted flower maturation and resulted in high flowering rates in L. gibba 7741 and 5504. Artificial cross-pollination between individuals of L. gibba 7741 yielded seeds at high frequencies unlike that in L. gibba 5504. In contrast to clone 7741, the anthers of 5504 did not dehisce upon maturation, its artificially released pollen grains had pineapple-like exine with tilted spines. These pollens were not stained by 2,5-diphenylmonotetrazoliumbromide (MTT) and failed to germinate. Therefore, clone 5504 is male sterile and has potential application with respect to hybrid vigour. Moreover, pollination of flowers of 5504 with 7741 pollen grains resulted in intraspecific hybrid seeds, which was confirmed by inter-simple sequence repeat (ISSR) markers. These hybrid seeds germinated at a high frequency, forming new clones.

High flavonoid accompanied with high starch accumulation triggered by nutrient starvation in bioenergy crop duckweed (Landoltia punctata)

Background

As the fastest growing plant, duckweed can thrive on anthropogenic wastewater. The purple-backed duckweed, Landoltia punctata, is rich in starch and flavonoids. However, the molecular biological basis of high flavonoid and low lignin content remains largely unknown, as does the best method to combine nutrients removed from sewage and the utilization value improvement of duckweed biomass.

Results

A combined omics study was performed to investigate the biosynthesis of flavonoid and the metabolic flux changes in L. punctata grown in different culture medium. Phenylalanine metabolism related transcripts were identified and carefully analyzed. Expression quantification results showed that most of the flavonoid biosynthetic transcripts were relatively highly expressed, while most lignin-related transcripts were poorly expressed or failed to be detected by iTRAQ based proteomic analyses. This explains why duckweed has a much lower lignin percentage and higher flavonoid content than most other plants. Growing in distilled water, expression of most flavonoid-related transcripts were increased, while most were decreased in uniconazole treated L. punctata (1/6 × Hoagland + 800 mg•L^-1 uniconazole). When L. punctata was cultivated in full nutrient medium (1/6 × Hoagland), more than half of these transcripts were increased, however others were suppressed. Metabolome results showed that a total of 20 flavonoid compounds were separated by HPLC in L. punctata grown in uniconazole and full nutrient medium. The quantities of all 20 compounds were decreased by uniconazole, while 11 were increased and 6 decreased when grown in full nutrient medium. Nutrient starvation resulted in an obvious purple accumulation on the underside of each frond.

Conclusions

The high flavonoid and low lignin content of L. punctata appears to be predominantly caused by the flavonoid-directed metabolic flux. Nutrient starvation is the best option to obtain high starch and flavonoid accumulation simultaneously in a short time for biofuels fermentation and natural products isolation.

Electronic supplementary material

The online version of this article (doi:10.1186/s12864-017-3559-z) contains supplementary material, which is available to authorized users.

Integrated analysis of transcriptome and metabolites reveals an essential role of metabolic flux in starch accumulation under nitrogen starvation in duckweed

BACKGROUND

Duckweed is considered a promising source of energy due to its high starch content and rapid growth rate. Starch accumulation in duckweed involves complex processes that depend on the balanced expression of genes controlled by various environmental and endogenous factors. Previous studies showed that nitrogen starvation induces a global stress response and results in the accumulation of starch in duckweed. However, relatively little is known about the mechanisms underlying the regulation of starch accumulation under conditions of nitrogen starvation.

RESULTS

In this study, we used next-generation sequencing technology to examine the transcriptome responses of Lemna aequinoctialis 6000 at three stages (0, 3, and 7 days) during nitrogen starvation in the presence of exogenously applied sucrose. Overall, 2522, 628, and 1832 differentially expressed unigenes (DEGs) were discovered for the treated and control samples. Clustering and enrichment analysis of DEGs revealed several biological processes occurring under nitrogen starvation. Genes involved in nitrogen metabolism showed the earliest responses to nitrogen starvation, whereas genes involved in carbohydrate biosynthesis were responded subsequently. The expression of genes encoding nitrate reductase, glutamine synthetase, and glutamate synthase was down-regulated under nitrogen starvation. The expression of unigenes encoding enzymes involved in gluconeogenesis was up-regulated, while the majority of unigenes involved in glycolysis were down-regulated. The metabolite results showed that more ADP-Glc was accumulated and lower levels of UDP-Glc were accumulated under nitrogen starvation, the activity of AGPase was significantly increased while the activity of UGPase was dramatically decreased. These changes in metabolite levels under nitrogen starvation are roughly consistent with the gene expression changes in the transcriptome.

CONCLUSIONS

Based on these results, it can be concluded that the increase of ADP-glucose and starch contents under nitrogen starvation is a consequence of increased output from the gluconeogenesis and TCA pathways, accompanied with the reduction of lipids and pectin biosynthesis. The results provide novel insights into the underlying mechanisms of starch accumulation during nitrogen starvation, which provide a foundation for the improvement of advanced bioethanol production in duckweed.