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Gallo G, Imbimbo P, Aulitto M. The Undeniable Potential of Thermophiles in Industrial Processes. Int J Mol Sci 2024; 25:7685. [PMID: 39062928 PMCID: PMC11276739 DOI: 10.3390/ijms25147685] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2024] [Revised: 07/05/2024] [Accepted: 07/07/2024] [Indexed: 07/28/2024] Open
Abstract
Extremophilic microorganisms play a key role in understanding how life on Earth originated and evolved over centuries. Their ability to thrive in harsh environments relies on a plethora of mechanisms developed to survive at extreme temperatures, pressures, salinity, and pH values. From a biotechnological point of view, thermophiles are considered a robust tool for synthetic biology as well as a reliable starting material for the development of sustainable bioprocesses. This review discusses the current progress in the biomanufacturing of high-added bioproducts from thermophilic microorganisms and their industrial applications.
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Affiliation(s)
- Giovanni Gallo
- Division of Microbiology, Faculty of Biology, Ludwig-Maximilians-Universität München, 82152 Martinsried, Germany;
| | - Paola Imbimbo
- Department of Chemical Sciences, University of Napoli Federico II, Complesso Universitario Monte Sant’Angelo, 80126 Napoli, Italy
| | - Martina Aulitto
- Department of Biology, University of Napoli Federico II, Complesso Universitario Monte Sant’Angelo, 80126 Napoli, Italy
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2
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Aulitto M, Alfano A, Maresca E, Avolio R, Errico ME, Gentile G, Cozzolino F, Monti M, Pirozzi A, Donsì F, Cimini D, Schiraldi C, Contursi P. Thermophilic biocatalysts for one-step conversion of citrus waste into lactic acid. Appl Microbiol Biotechnol 2024; 108:155. [PMID: 38244047 PMCID: PMC10799777 DOI: 10.1007/s00253-023-12904-7] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2023] [Revised: 10/04/2023] [Accepted: 10/11/2023] [Indexed: 01/22/2024]
Abstract
Agri-food residues offer significant potential as a raw material for the production of L-lactic acid through microbial fermentation. Weizmannia coagulans, previously known as Bacillus coagulans, is a spore-forming, lactic acid-producing, gram-positive, with known probiotic and prebiotic properties. This study aimed to evaluate the feasibility of utilizing untreated citrus waste as a sustainable feedstock for the production of L-lactic acid in a one-step process, by using the strain W. coagulans MA-13. By employing a thermophilic enzymatic cocktail (Cellic CTec2) in conjunction with the hydrolytic capabilities of MA-13, biomass degradation was enhanced by up to 62%. Moreover, batch and fed-batch fermentation experiments demonstrated the complete fermentation of glucose into L-lactic acid, achieving a concentration of up to 44.8 g/L. These results point to MA-13 as a microbial cell factory for one-step production of L-lactic acid, by combining cost-effective saccharification with MA-13 fermentative performance, on agri-food wastes. Moreover, the potential of this approach for sustainable valorization of agricultural waste streams is successfully proven. KEY POINTS: • Valorization of citrus waste, an abundant residue in Mediterranean countries. • Sustainable production of the L-( +)-lactic acid in one-step process. • Enzymatic pretreatment is a valuable alternative to the use of chemical.
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Affiliation(s)
- Martina Aulitto
- Department of Biology, University of Naples "Federico II,", Naples, Italy
- Institute for Polymers, Composites and Biomaterials (IPCB), National Research Council of Italy (CNR), Via Campi Flegrei 34, 80078, Pozzuoli, Italy
- Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - Alberto Alfano
- Department of Experimental Medicine, Section of Biotechnology, Medical Histology and Molecular Biology Naples, University of Campania L. Vanvitelli, Naples, Italy
| | - Emanuela Maresca
- Department of Biology, University of Naples "Federico II,", Naples, Italy
| | - Roberto Avolio
- Institute for Polymers, Composites and Biomaterials (IPCB), National Research Council of Italy (CNR), Via Campi Flegrei 34, 80078, Pozzuoli, Italy
| | - Maria Emanuela Errico
- Institute for Polymers, Composites and Biomaterials (IPCB), National Research Council of Italy (CNR), Via Campi Flegrei 34, 80078, Pozzuoli, Italy
| | - Gennaro Gentile
- Institute for Polymers, Composites and Biomaterials (IPCB), National Research Council of Italy (CNR), Via Campi Flegrei 34, 80078, Pozzuoli, Italy
| | - Flora Cozzolino
- Department of Chemical Sciences, University of Naples "Federico II," Naples, Italy; CEINGE Advanced Biotechnologies, Naples, Italy
| | - Maria Monti
- Department of Chemical Sciences, University of Naples "Federico II," Naples, Italy; CEINGE Advanced Biotechnologies, Naples, Italy
| | - Annachiara Pirozzi
- Department of Industrial Engineering, University of Salerno, Via Giovanni Paolo II 132, 84084, Fisciano, Italy
| | - Francesco Donsì
- Department of Industrial Engineering, University of Salerno, Via Giovanni Paolo II 132, 84084, Fisciano, Italy
| | - Donatella Cimini
- Department of Experimental Medicine, Section of Biotechnology, Medical Histology and Molecular Biology Naples, University of Campania L. Vanvitelli, Naples, Italy.
| | - Chiara Schiraldi
- Department of Experimental Medicine, Section of Biotechnology, Medical Histology and Molecular Biology Naples, University of Campania L. Vanvitelli, Naples, Italy
| | - Patrizia Contursi
- Department of Biology, University of Naples "Federico II,", Naples, Italy.
- NBFC, National Biodiversity Future Center, 90133, Palermo, Italy.
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Shan W, Yan Y, Li Y, Hu W, Chen J. Microbial tolerance engineering for boosting lactic acid production from lignocellulose. BIOTECHNOLOGY FOR BIOFUELS AND BIOPRODUCTS 2023; 16:78. [PMID: 37170163 PMCID: PMC10173534 DOI: 10.1186/s13068-023-02334-y] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2023] [Accepted: 04/28/2023] [Indexed: 05/13/2023]
Abstract
Lignocellulosic biomass is an attractive non-food feedstock for lactic acid production via microbial conversion due to its abundance and low-price, which can alleviate the conflict with food supplies. However, a variety of inhibitors derived from the biomass pretreatment processes repress microbial growth, decrease feedstock conversion efficiency and increase lactic acid production costs. Microbial tolerance engineering strategies accelerate the conversion of carbohydrates by improving microbial tolerance to toxic inhibitors using pretreated lignocellulose hydrolysate as a feedstock. This review presents the recent significant progress in microbial tolerance engineering to develop robust microbial cell factories with inhibitor tolerance and their application for cellulosic lactic acid production. Moreover, microbial tolerance engineering crosslinking other efficient breeding tools and novel approaches are also deeply discussed, aiming to providing a practical guide for economically viable production of cellulosic lactic acid.
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Affiliation(s)
- Wenwen Shan
- Department of Biophysics, Institute of Modern Physics, Chinese Academy of Sciences, 509 Nanchang Road, Lanzhou, 730000, People's Republic of China
- University of Chinese Academy of Sciences, Beijing, People's Republic of China
| | - Yongli Yan
- Department of Biophysics, Institute of Modern Physics, Chinese Academy of Sciences, 509 Nanchang Road, Lanzhou, 730000, People's Republic of China
- University of Chinese Academy of Sciences, Beijing, People's Republic of China
| | - Yongda Li
- College of Food Science and Engineering, Gansu Agricultural University, Lanzhou, People's Republic of China
| | - Wei Hu
- Department of Biophysics, Institute of Modern Physics, Chinese Academy of Sciences, 509 Nanchang Road, Lanzhou, 730000, People's Republic of China.
- University of Chinese Academy of Sciences, Beijing, People's Republic of China.
| | - Jihong Chen
- Department of Biophysics, Institute of Modern Physics, Chinese Academy of Sciences, 509 Nanchang Road, Lanzhou, 730000, People's Republic of China.
- University of Chinese Academy of Sciences, Beijing, People's Republic of China.
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4
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Bianchini IDA, Jofre FM, Queiroz SDS, Lacerda TM, Felipe MDGDA. Relation of xylitol formation and lignocellulose degradation in yeast. Appl Microbiol Biotechnol 2023; 107:3143-3151. [PMID: 37039848 DOI: 10.1007/s00253-023-12495-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2022] [Revised: 03/18/2023] [Accepted: 03/21/2023] [Indexed: 04/12/2023]
Abstract
One of the critical steps of the biotechnological production of xylitol from lignocellulosic biomass is the deconstruction of the plant cell wall. This step is crucial to the bioprocess once the solubilization of xylose from hemicellulose is allowed, which can be easily converted to xylitol by pentose-assimilating yeasts in a microaerobic environment. However, lignocellulosic toxic compounds formed/released during plant cell wall pretreatment, such as aliphatic acids, furans, and phenolic compounds, inhibit xylitol production during fermentation, reducing the fermentative performance of yeasts and impairing the bioprocess productivity. Although the toxicity of lignocellulosic inhibitors is one of the biggest bottlenecks of the biotechnological production of xylitol, most of the studies focus on how much xylitol production is inhibited but not how and where cells are affected. Understanding this mechanism is important in order to develop strategies to overcome lignocellulosic inhibitor toxicity. In this mini-review, we addressed how these inhibitors affect both yeast physiology and metabolism and consequently xylose-to-xylitol bioconversion. In addition, this work also addresses about cellular adaptation, one of the most relevant strategies to overcome lignocellulosic inhibitors toxicity, once it allows the development of robust and tolerant strains, contributing to the improvement of the microbial performance against hemicellulosic hydrolysates toxicity. KEY POINTS: • Impact of lignocellulosic inhibitors on the xylitol production by yeasts • Physiological and metabolic alterations provoked by lignocellulosic inhibitors • Cell adaptation as an efficient strategy to improve yeast's robustness.
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Affiliation(s)
- Italo de Andrade Bianchini
- Department of Biotechnology, Engineering School of Lorena, University of São Paulo, Estrada Municipal do Campinho, 100, Campinho, Lorena, SP, 12602-810, Brazil
| | - Fanny Machado Jofre
- Department of Biotechnology, Engineering School of Lorena, University of São Paulo, Estrada Municipal do Campinho, 100, Campinho, Lorena, SP, 12602-810, Brazil
| | - Sarah de Souza Queiroz
- Department of Biotechnology, Engineering School of Lorena, University of São Paulo, Estrada Municipal do Campinho, 100, Campinho, Lorena, SP, 12602-810, Brazil
| | - Talita Martins Lacerda
- Department of Biotechnology, Engineering School of Lorena, University of São Paulo, Estrada Municipal do Campinho, 100, Campinho, Lorena, SP, 12602-810, Brazil
| | - Maria das Graças de Almeida Felipe
- Department of Biotechnology, Engineering School of Lorena, University of São Paulo, Estrada Municipal do Campinho, 100, Campinho, Lorena, SP, 12602-810, Brazil.
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Alicyclobacillus mali FL18 as a Novel Source of Glycosyl Hydrolases: Characterization of a New Thermophilic β-Xylosidase Tolerant to Monosaccharides. Int J Mol Sci 2022; 23:ijms232214310. [PMID: 36430787 PMCID: PMC9696088 DOI: 10.3390/ijms232214310] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2022] [Revised: 11/04/2022] [Accepted: 11/16/2022] [Indexed: 11/19/2022] Open
Abstract
A thermo-acidophilic bacterium, Alicyclobacillus mali FL18, was isolated from a hot spring of Pisciarelli, near Naples, Italy; following genome analysis, a novel putative β-xylosidase, AmβXyl, belonging to the glycosyl hydrolase (GH) family 3 was identified. A synthetic gene was produced, cloned in pET-30a(+), and expressed in Escherichia coli BL21 (DE3) RIL. The purified recombinant protein, which showed a dimeric structure, had optimal catalytic activity at 80 °C and pH 5.6, exhibiting 60% of its activity after 2 h at 50 °C and displaying high stability (more than 80%) at pH 5.0-8.0 after 16 h. AmβXyl is mainly active on both para-nitrophenyl-β-D-xylopyranoside (KM 0.52 mM, kcat 1606 s-1, and kcat/KM 3088.46 mM-1·s-1) and para-nitrophenyl-α-L-arabinofuranoside (KM 10.56 mM, kcat 2395.8 s-1, and kcat/KM 226.87 mM-1·s-1). Thin-layer chromatography showed its ability to convert xylooligomers (xylobiose and xylotriose) into xylose, confirming that AmβXyl is a true β-xylosidase. Furthermore, no inhibitory effect on enzymatic activity by metal ions, detergents, or EDTA was observed except for 5 mM Cu2+. AmβXyl showed an excellent tolerance to organic solvents; in particular, the enzyme increased its activity at high concentrations (30%) of organic solvents such as ethanol, methanol, and DMSO. Lastly, the enzyme showed not only a good tolerance to inhibition by xylose, arabinose, and glucose, but was activated by 0.75 M xylose and up to 1.5 M by both arabinose and glucose. The high tolerance to organic solvents and monosaccharides together with other characteristics reported above suggests that AmβXyl may have several applications in many industrial fields.
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Aulitto M, Martinez-Alvarez L, Fusco S, She Q, Bartolucci S, Peng X, Contursi P. Genomics, Transcriptomics, and Proteomics of SSV1 and Related Fusellovirus: A Minireview. Viruses 2022; 14:2082. [PMID: 36298638 PMCID: PMC9608457 DOI: 10.3390/v14102082] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2022] [Revised: 09/09/2022] [Accepted: 09/15/2022] [Indexed: 11/16/2022] Open
Abstract
Saccharolobus spindle-shaped virus 1 (SSV1) was one of the first viruses identified in the archaeal kingdom. Originally isolated from a Japanese species of Saccharolobus back in 1984, it has been extensively used as a model system for genomic, transcriptomic, and proteomic studies, as well as to unveil the molecular mechanisms governing the host-virus interaction. The purpose of this mini review is to supply a compendium of four decades of research on the SSV1 virus.
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Affiliation(s)
- Martina Aulitto
- Dipartimento di Biologia, University of Naples Federico II, 80126 Naples, Italy
- Lawrence Berkeley National Laboratory, Biological Systems and Engineering Division, Berkeley, CA 94720, USA
| | - Laura Martinez-Alvarez
- Archaea Centre, Department of Biology, University of Copenhagen, DK-1165 Copenhagen, Denmark
| | - Salvatore Fusco
- Biochemistry and Industrial Biotechnology Laboratory, Department of Biotechnology, University of Verona, 37134 Verona, Italy
| | - Qunxin She
- CRISPR and Archaea Biology Research Center, State Key Laboratory of Microbial Technology, Microbial Technology Institute, Shandong University, Qingdao 250100, China
| | | | - Xu Peng
- Archaea Centre, Department of Biology, University of Copenhagen, DK-1165 Copenhagen, Denmark
| | - Patrizia Contursi
- Dipartimento di Biologia, University of Naples Federico II, 80126 Naples, Italy
- BAT Center—Interuniversity Center for Studies on Bioinspired Agro-Environmental Technology, University of Naples Federico II, 80055 Naples, Italy
- Task Force on Microbiome Studies, University of Naples Federico II, 80126 Naples, Italy
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A Comparative Analysis of Weizmannia coagulans Genomes Unravels the Genetic Potential for Biotechnological Applications. Int J Mol Sci 2022; 23:ijms23063135. [PMID: 35328559 PMCID: PMC8954581 DOI: 10.3390/ijms23063135] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2021] [Revised: 02/11/2022] [Accepted: 03/11/2022] [Indexed: 12/20/2022] Open
Abstract
The production of biochemicals requires the use of microbial strains with efficient substrate conversion and excellent environmental robustness, such as Weizmannia coagulans species. So far, the genomes of 47 strains have been sequenced. Herein, we report a comparative genomic analysis of nine strains on the full repertoire of Carbohydrate-Active enZymes (CAZymes), secretion systems, and resistance mechanisms to environmental challenges. Moreover, Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) immune system along with CRISPR-associated (Cas) genes, was also analyzed. Overall, this study expands our understanding of the strain's genomic diversity of W. coagulans to fully exploit its potential in biotechnological applications.
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Velamakanni RP, Sree BS, Vuppugalla P, Velamakanni RS, Merugu R. Biopolymers from Microbial Flora. Biopolymers 2022. [DOI: 10.1007/978-3-030-98392-5_8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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9
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Battista F, Zuliani L, Rizzioli F, Fusco S, Bolzonella D. Biodiesel, biogas and fermentable sugars production from Spent coffee Grounds: A cascade biorefinery approach. BIORESOURCE TECHNOLOGY 2021; 342:125952. [PMID: 34563824 DOI: 10.1016/j.biortech.2021.125952] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/29/2021] [Revised: 09/08/2021] [Accepted: 09/12/2021] [Indexed: 06/13/2023]
Abstract
Spent coffee grounds are rich in high-value compounds, such as saturate and unsaturated fatty acids, and polysaccharides. Therefore, this work investigated a cascade biorefinery to produce: i) biodiesel from coffee oils, ii) cellulose- and hemicellulose-derived fermentable sugars and iii) biomethane from the residual solid fraction after sugars extraction. Transesterification reached the best performances of 86% w/w of fatty acid methyl esters using 1:8 coffee oil/methanol ratio and 2% w/w of KOH as catalyst. The use of glycerol for the pretreatment of spent coffee grounds allowed the internal circulation of a process leftover from transesterification; thus, avoiding the use of clean water. In the best conditions, the total released fermentable sugars were about 40-50% (w/w) on dry weight basis. The low content of easily degradable compounds led to a low methane production of 50 LCH4/kgVS, indicating the need to search for better performing alternatives to close the biorefinery loop.
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Affiliation(s)
- Federico Battista
- Chemical, Environment and Bioprocesses Engineering Laboratory, Department of Biotechnology, University of Verona, 37134 Verona, Italy.
| | - Luca Zuliani
- Biochemistry and Industrial Biotechnology Laboratory, Department of Biotechnology, University of Verona, 37134 Verona, Italy
| | - Fabio Rizzioli
- Chemical, Environment and Bioprocesses Engineering Laboratory, Department of Biotechnology, University of Verona, 37134 Verona, Italy
| | - Salvatore Fusco
- Biochemistry and Industrial Biotechnology Laboratory, Department of Biotechnology, University of Verona, 37134 Verona, Italy
| | - David Bolzonella
- Chemical, Environment and Bioprocesses Engineering Laboratory, Department of Biotechnology, University of Verona, 37134 Verona, Italy
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Biorefinery Gets Hot: Thermophilic Enzymes and Microorganisms for Second-Generation Bioethanol Production. Processes (Basel) 2021. [DOI: 10.3390/pr9091583] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022] Open
Abstract
To mitigate the current global energy and the environmental crisis, biofuels such as bioethanol have progressively gained attention from both scientific and industrial perspectives. However, at present, commercialized bioethanol is mainly derived from edible crops, thus raising serious concerns given its competition with feed production. For this reason, lignocellulosic biomasses (LCBs) have been recognized as important alternatives for bioethanol production. Because LCBs supply is sustainable, abundant, widespread, and cheap, LCBs-derived bioethanol currently represents one of the most viable solutions to meet the global demand for liquid fuel. However, the cost-effective conversion of LCBs into ethanol remains a challenge and its implementation has been hampered by several bottlenecks that must still be tackled. Among other factors related to the challenging and variable nature of LCBs, we highlight: (i) energy-demanding pretreatments, (ii) expensive hydrolytic enzyme blends, and (iii) the need for microorganisms that can ferment mixed sugars. In this regard, thermophiles represent valuable tools to overcome some of these limitations. Thus, the aim of this review is to provide an overview of the state-of-the-art technologies involved, such as the use of thermophilic enzymes and microorganisms in industrial-relevant conditions, and to propose possible means to implement thermophiles into second-generation ethanol biorefineries that are already in operation.
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Enhanced lactic acid production from P 2O 5-pretreated biomass by domesticated Pediococcus pentosaceus without detoxification. Bioprocess Biosyst Eng 2021; 44:2153-2166. [PMID: 34057575 DOI: 10.1007/s00449-021-02591-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2021] [Accepted: 05/12/2021] [Indexed: 10/21/2022]
Abstract
Expensive cellulase and complex detoxification procedures increase the cost of biomass lactic acid fermentation. Therefore, it is of great significance to develop a robust method to ferment lactic acid using biomass by avoiding cellulase and detoxification. This study demonstrates the advantage of combining mechanocatalytic P2O5 pre-treatment and strain domestication. We show that an enzyme-free mechanocatalytic saccharification process by combining mix-milling of P2O5 with biomass and successive hydrolysis produces a fermentable hydrolysate with much less inhibitory compounds than the hydrolysates obtained by conventional methods; only 5-HMF, furfural and acetic acid were detected in the biomass hydrolysate, and no phenolic inhibitors were detected. Pretreatment of biomass with P2O5 not only avoided cellulase, but also obtained less toxic hydrolysate. Furthermore, the Pediococcus pentosaceus strain gained superior inhibitor tolerance through domestication. It could tolerate 17.1 g/L acetic acid, 12.5 g/L 5-HMF, 11.9 g/L guaiacol and 11.5 g/L furfural and showed activity in decomposing furfural and 5-HMF for self-detoxification, allowing efficient lactic acid fermentation from biomass hydrolysate without detoxification. The lactic acid concentration and conversion rate fermented by domesticated bacteria were increased by 113.5% and 22.4%, respectively. In addition, the domesticated bacteria could utilize glucose and xylose simultaneously to produce lactic acid selectively. The combination of P2O5 pre-treatment and strain domestication to ferment lactic acid is applied to several biomass feedstocks, including corn stalk, corn stalk residue and rice husk residue. Lactic acid concentrations of 29.8 g/L, 31.1 g/L, and 46.2 g/L were produced from the hydrolysates of corn stalk, corn stalk residue and rice husk residue, respectively.
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12
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Wang R, Lorantfy B, Fusco S, Olsson L, Franzén CJ. Analysis of methods for quantifying yeast cell concentration in complex lignocellulosic fermentation processes. Sci Rep 2021; 11:11293. [PMID: 34050249 PMCID: PMC8163860 DOI: 10.1038/s41598-021-90703-8] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2021] [Accepted: 05/10/2021] [Indexed: 11/09/2022] Open
Abstract
Cell mass and viability are tightly linked to the productivity of fermentation processes. In 2nd generation lignocellulose-based media quantitative measurement of cell concentration is challenging because of particles, auto-fluorescence, and intrinsic colour and turbidity of the media. We systematically evaluated several methods for quantifying total and viable yeast cell concentrations to validate their use in lignocellulosic media. Several automated cell counting systems and stain-based viability tests had very limited applicability in such samples. In contrast, manual cell enumeration in a hemocytometer, plating and enumeration of colony forming units, qPCR, and in situ dielectric spectroscopy were further investigated. Parameter optimization to measurements in synthetic lignocellulosic media, which mimicked typical lignocellulosic fermentation conditions, resulted in statistically significant calibration models with good predictive capacity for these four methods. Manual enumeration of cells in a hemocytometer and of CFU were further validated for quantitative assessment of cell numbers in simultaneous saccharification and fermentation experiments on steam-exploded wheat straw. Furthermore, quantitative correlations could be established between these variables and in situ permittivity. In contrast, qPCR quantification suffered from inconsistent DNA extraction from the lignocellulosic slurries. Development of reliable and validated cell quantification methods and understanding their strengths and limitations in lignocellulosic contexts, will enable further development, optimization, and control of lignocellulose-based fermentation processes.
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Affiliation(s)
- Ruifei Wang
- Division of Industrial Biotechnology, Department of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg, Sweden.,Nouryon, Hamnvägen 2, 444 85, Stenungsund, Sweden
| | - Bettina Lorantfy
- Division of Industrial Biotechnology, Department of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg, Sweden.,BioPhero ApS, Lersø Parkallé 42-44, 4. th., 2100, Copenhagen Ø, Denmark
| | - Salvatore Fusco
- Division of Industrial Biotechnology, Department of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg, Sweden.,Department of Biotechnology, University of Verona, Strada le Grazie 15, 37134, Verona, Italy
| | - Lisbeth Olsson
- Division of Industrial Biotechnology, Department of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg, Sweden
| | - Carl Johan Franzén
- Division of Industrial Biotechnology, Department of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg, Sweden.
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Gallo G, Puopolo R, Carbonaro M, Maresca E, Fiorentino G. Extremophiles, a Nifty Tool to Face Environmental Pollution: From Exploitation of Metabolism to Genome Engineering. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2021; 18:5228. [PMID: 34069056 PMCID: PMC8157027 DOI: 10.3390/ijerph18105228] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/16/2021] [Revised: 05/06/2021] [Accepted: 05/09/2021] [Indexed: 12/13/2022]
Abstract
Extremophiles are microorganisms that populate habitats considered inhospitable from an anthropocentric point of view and are able to tolerate harsh conditions such as high temperatures, extreme pHs, high concentrations of salts, toxic organic substances, and/or heavy metals. These microorganisms have been broadly studied in the last 30 years and represent precious sources of biomolecules and bioprocesses for many biotechnological applications; in this context, scientific efforts have been focused on the employment of extremophilic microbes and their metabolic pathways to develop biomonitoring and bioremediation strategies to face environmental pollution, as well as to improve biorefineries for the conversion of biomasses into various chemical compounds. This review gives an overview on the peculiar metabolic features of certain extremophilic microorganisms, with a main focus on thermophiles, which make them attractive for biotechnological applications in the field of environmental remediation; moreover, it sheds light on updated genetic systems (also those based on the CRISPR-Cas tool), which expand the potentialities of these microorganisms to be genetically manipulated for various biotechnological purposes.
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Affiliation(s)
- Giovanni Gallo
- Department of Biology, University of Naples Federico II, Via Cinthia 21, 80126 Napoli, Italy; (G.G.); (R.P.); (M.C.); (E.M.)
- Consiglio Nazionale delle Ricerche CNR, Institute of Polymers, Composites and Biomaterials (IPCB), Via Campi Flegrei, 34, 80078 Pozzuoli, Italy
| | - Rosanna Puopolo
- Department of Biology, University of Naples Federico II, Via Cinthia 21, 80126 Napoli, Italy; (G.G.); (R.P.); (M.C.); (E.M.)
| | - Miriam Carbonaro
- Department of Biology, University of Naples Federico II, Via Cinthia 21, 80126 Napoli, Italy; (G.G.); (R.P.); (M.C.); (E.M.)
| | - Emanuela Maresca
- Department of Biology, University of Naples Federico II, Via Cinthia 21, 80126 Napoli, Italy; (G.G.); (R.P.); (M.C.); (E.M.)
| | - Gabriella Fiorentino
- Department of Biology, University of Naples Federico II, Via Cinthia 21, 80126 Napoli, Italy; (G.G.); (R.P.); (M.C.); (E.M.)
- Consiglio Nazionale delle Ricerche CNR, Institute of Polymers, Composites and Biomaterials (IPCB), Via Campi Flegrei, 34, 80078 Pozzuoli, Italy
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Munagala M, Shastri Y, Nalawade K, Konde K, Patil S. Life cycle and economic assessment of sugarcane bagasse valorization to lactic acid. WASTE MANAGEMENT (NEW YORK, N.Y.) 2021; 126:52-64. [PMID: 33743339 DOI: 10.1016/j.wasman.2021.02.052] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2020] [Revised: 01/31/2021] [Accepted: 02/25/2021] [Indexed: 06/12/2023]
Abstract
In this work, detailed life cycle assessment (LCA) and techno-economic analysis (TEA) of a novel lactic acid (LA) production process from sugarcane bagasse is performed, with the objective of identifying process improvement opportunities. Moreover, this is first such study in the Indian context. Experimental data generated at the Vasantdada Sugar Institute (VSI) for upstream processes is combined with ASPEN Plus simulation of the downstream steps for a commercial plant producing 104 tonnes per day of LA. Equipment sizing is performed and costing is done using standard approaches. OpenLCA is used to develop the LCA model and Ecoinvent database is used to quantify life cycle impacts for 1 kg of LA. Different scenarios for the LA plant are studied. Results showed that the pretreatment stage was crucial from both economic and environmental perspectives. The total life cycle climate change impact for production of 1 kg of lactic acid was 4.62 kg CO2 eq. The product cost of LA was USD 2.9/kg, and a payback time of 6 years was achieved at a selling price of USD 3.21/kg. Scenario analysis has revealed that lactic acid plant annexed to a sugar mill led to significant environmental and economic benefits. Sensitivity analysis has identified opportunities to reduce the life cycle climate change impact to 2.29 kg CO2 eq. and product cost to USD 1.42/kg through reduced alkali consumption, higher solid loading, and reduced enzyme loading.
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Affiliation(s)
- Meghana Munagala
- Department of Chemical Engineering, Indian Institute of Technology Bombay, Mumbai, India
| | - Yogendra Shastri
- Department of Chemical Engineering, Indian Institute of Technology Bombay, Mumbai, India.
| | - Ketaki Nalawade
- Department of Alcohol Technology and Biofuels, Vasantdada Sugar Institute, Manjari (Bk.), Pune, India
| | - Kakasaheb Konde
- Department of Alcohol Technology and Biofuels, Vasantdada Sugar Institute, Manjari (Bk.), Pune, India
| | - Sanjay Patil
- Department of Alcohol Technology and Biofuels, Vasantdada Sugar Institute, Manjari (Bk.), Pune, India
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15
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Li J, Zhu K, Miao L, Rong L, Zhao Y, Li S, Ma L, Li J, Zhang C, Xiao D, Foo JL, Yu A. Simultaneous Improvement of Limonene Production and Tolerance in Yarrowia lipolytica through Tolerance Engineering and Evolutionary Engineering. ACS Synth Biol 2021; 10:884-896. [PMID: 33715363 DOI: 10.1021/acssynbio.1c00052] [Citation(s) in RCA: 29] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Limonene is an important plant natural product widely used in food and cosmetics production as well as in the pharmaceutical and chemical industries. However, low efficiency of plant extraction and high energy consumption in chemical synthesis limit the sustainability of industrial limonene production. Recently, the advancement of metabolic engineering and synthetic biology has facilitated the engineering of microbes into microbial cell factories for producing limonene. However, the deleterious effects on cellular activity by the toxicity of limonene is the major obstacle in achieving high-titer production of limonene in engineered microbes. In this study, by using transcriptomics, we identified 82 genes from the nonconventional yeast Yarrowia lipolytica that were up-regulated when exposed to limonene. When overexpressed, 8 of the gene candidates improved tolerance of this yeast to exogenously added limonene. To determine whether overexpression of these genes could also improve limonene production, we individually coexpressed the tolerance-enhancing genes with a limonene synthase gene. Indeed, expression of 5 of the 8 candidate genes enhanced limonene production in Y. lipolytica. Particularly, overexpressing YALI0F19492p led to an 8-fold improvement in product titer. Furthermore, through short-term adaptive laboratory evolution strategy, in combination with morphological and cytoplasmic membrane integrity analysis, we shed light on the underlying mechanism of limonene cytotoxicity to Y. lipolytica. This study demonstrated an effective strategy for improving limonene tolerance of Y. lipolytica and limonene titer in the host strain through the combinatorial use of tolerance engineering and evolutionary engineering.
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Affiliation(s)
- Jian Li
- State Key Laboratory of Food Nutrition and Safety, Key Laboratory of Industrial Fermentation Microbiology of the Ministry of Education, Tianjin Key Laboratory of Industrial Microbiology, College of Biotechnology, Tianjin University of Science and Technology, No. 29 13th Street TEDA, Tianjin 300457, PR China
| | - Kun Zhu
- State Key Laboratory of Food Nutrition and Safety, Key Laboratory of Industrial Fermentation Microbiology of the Ministry of Education, Tianjin Key Laboratory of Industrial Microbiology, College of Biotechnology, Tianjin University of Science and Technology, No. 29 13th Street TEDA, Tianjin 300457, PR China
| | - Lin Miao
- State Key Laboratory of Food Nutrition and Safety, Key Laboratory of Industrial Fermentation Microbiology of the Ministry of Education, Tianjin Key Laboratory of Industrial Microbiology, College of Biotechnology, Tianjin University of Science and Technology, No. 29 13th Street TEDA, Tianjin 300457, PR China
| | - Lanxin Rong
- State Key Laboratory of Food Nutrition and Safety, Key Laboratory of Industrial Fermentation Microbiology of the Ministry of Education, Tianjin Key Laboratory of Industrial Microbiology, College of Biotechnology, Tianjin University of Science and Technology, No. 29 13th Street TEDA, Tianjin 300457, PR China
| | - Yu Zhao
- State Key Laboratory of Food Nutrition and Safety, Key Laboratory of Industrial Fermentation Microbiology of the Ministry of Education, Tianjin Key Laboratory of Industrial Microbiology, College of Biotechnology, Tianjin University of Science and Technology, No. 29 13th Street TEDA, Tianjin 300457, PR China
| | - Shenglong Li
- State Key Laboratory of Food Nutrition and Safety, Key Laboratory of Industrial Fermentation Microbiology of the Ministry of Education, Tianjin Key Laboratory of Industrial Microbiology, College of Biotechnology, Tianjin University of Science and Technology, No. 29 13th Street TEDA, Tianjin 300457, PR China
| | - Lijuan Ma
- State Key Laboratory of Food Nutrition and Safety, Key Laboratory of Industrial Fermentation Microbiology of the Ministry of Education, Tianjin Key Laboratory of Industrial Microbiology, College of Biotechnology, Tianjin University of Science and Technology, No. 29 13th Street TEDA, Tianjin 300457, PR China
| | - Jianxun Li
- Agricultural Processing Institute, Chinese Academy of Agricultural Sciences, Beijing 100193, PR China
| | - Cuiying Zhang
- State Key Laboratory of Food Nutrition and Safety, Key Laboratory of Industrial Fermentation Microbiology of the Ministry of Education, Tianjin Key Laboratory of Industrial Microbiology, College of Biotechnology, Tianjin University of Science and Technology, No. 29 13th Street TEDA, Tianjin 300457, PR China
| | - Dongguang Xiao
- State Key Laboratory of Food Nutrition and Safety, Key Laboratory of Industrial Fermentation Microbiology of the Ministry of Education, Tianjin Key Laboratory of Industrial Microbiology, College of Biotechnology, Tianjin University of Science and Technology, No. 29 13th Street TEDA, Tianjin 300457, PR China
| | - Jee Loon Foo
- Synthetic Biology Translational Research Programme, Yong Loo Lin School of Medicine, National University of Singapore, 119228 Singapore
- NUS Synthetic Biology for Clinical and Technological Innovation (SynCTI), National University of Singapore, 117456 Singapore
- Department of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, 117597 Singapore
| | - Aiqun Yu
- State Key Laboratory of Food Nutrition and Safety, Key Laboratory of Industrial Fermentation Microbiology of the Ministry of Education, Tianjin Key Laboratory of Industrial Microbiology, College of Biotechnology, Tianjin University of Science and Technology, No. 29 13th Street TEDA, Tianjin 300457, PR China
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16
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Aulitto M, Strazzulli A, Sansone F, Cozzolino F, Monti M, Moracci M, Fiorentino G, Limauro D, Bartolucci S, Contursi P. Prebiotic properties of Bacillus coagulans MA-13: production of galactoside hydrolyzing enzymes and characterization of the transglycosylation properties of a GH42 β-galactosidase. Microb Cell Fact 2021; 20:71. [PMID: 33736637 PMCID: PMC7977261 DOI: 10.1186/s12934-021-01553-y] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2021] [Accepted: 02/25/2021] [Indexed: 01/18/2023] Open
Abstract
Background The spore-forming lactic acid bacterium Bacillus coagulans MA-13 has been isolated from canned beans manufacturing and successfully employed for the sustainable production of lactic acid from lignocellulosic biomass. Among lactic acid bacteria, B. coagulans strains are generally recognized as safe (GRAS) for human consumption. Low-cost microbial production of industrially valuable products such as lactic acid and various enzymes devoted to the hydrolysis of oligosaccharides and lactose, is of great importance to the food industry. Specifically, α- and β-galactosidases are attractive for their ability to hydrolyze not-digestible galactosides present in the food matrix as well as in the human gastrointestinal tract. Results In this work we have explored the potential of B. coagulans MA-13 as a source of metabolites and enzymes to improve the digestibility and the nutritional value of food. A combination of mass spectrometry analysis with conventional biochemical approaches has been employed to unveil the intra- and extra- cellular glycosyl hydrolase (GH) repertoire of B. coagulans MA-13 under diverse growth conditions. The highest enzymatic activity was detected on β-1,4 and α-1,6-glycosidic linkages and the enzymes responsible for these activities were unambiguously identified as β-galactosidase (GH42) and α-galactosidase (GH36), respectively. Whilst the former has been found only in the cytosol, the latter is localized also extracellularly. The export of this enzyme may occur through a not yet identified secretion mechanism, since a typical signal peptide is missing in the α-galactosidase sequence. A full biochemical characterization of the recombinant β-galactosidase has been carried out and the ability of this enzyme to perform homo- and hetero-condensation reactions to produce galacto-oligosaccharides, has been demonstrated. Conclusions Probiotics which are safe for human use and are capable of producing high levels of both α-galactosidase and β-galactosidase are of great importance to the food industry. In this work we have proven the ability of B. coagulans MA-13 to over-produce these two enzymes thus paving the way for its potential use in treatment of gastrointestinal diseases. ![]()
Supplementary Information The online version contains supplementary material available at 10.1186/s12934-021-01553-y.
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Affiliation(s)
- Martina Aulitto
- Department of Biology, University of Naples Federico II, 80126, Naples, Italy.,Division of Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - Andrea Strazzulli
- Department of Biology, University of Naples Federico II, 80126, Naples, Italy.,Task Force On Microbiome Studies, University of Naples Federico II, Naples, Italy
| | - Ferdinando Sansone
- Department of Biology, University of Naples Federico II, 80126, Naples, Italy
| | - Flora Cozzolino
- Department of Chemical Sciences, University of Naples Federico II, 80126, Naples, Italy.,CEINGE Advanced Biotechnologies, University of Naples Federico II, 80145, Naples, Italy
| | - Maria Monti
- Department of Chemical Sciences, University of Naples Federico II, 80126, Naples, Italy.,CEINGE Advanced Biotechnologies, University of Naples Federico II, 80145, Naples, Italy
| | - Marco Moracci
- Department of Biology, University of Naples Federico II, 80126, Naples, Italy.,Task Force On Microbiome Studies, University of Naples Federico II, Naples, Italy.,Institute of Biosciences and BioResources-National Research Council of Italy, Naples, Italy
| | - Gabriella Fiorentino
- Department of Biology, University of Naples Federico II, 80126, Naples, Italy.,BAT Center-Interuniversity Center for Studies On Bioinspired Agro-Environmental Technology, University of Napoli Federico II, Portici, NA, Italy
| | - Danila Limauro
- Department of Biology, University of Naples Federico II, 80126, Naples, Italy.,BAT Center-Interuniversity Center for Studies On Bioinspired Agro-Environmental Technology, University of Napoli Federico II, Portici, NA, Italy
| | | | - Patrizia Contursi
- Department of Biology, University of Naples Federico II, 80126, Naples, Italy. .,Task Force On Microbiome Studies, University of Naples Federico II, Naples, Italy. .,BAT Center-Interuniversity Center for Studies On Bioinspired Agro-Environmental Technology, University of Napoli Federico II, Portici, NA, Italy.
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17
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Simultaneous saccharification and lactic acid fermentation of the cellulosic fraction of municipal solid waste using Bacillus smithii. Biotechnol Lett 2020; 43:667-675. [PMID: 33219874 PMCID: PMC7873104 DOI: 10.1007/s10529-020-03049-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2020] [Accepted: 11/13/2020] [Indexed: 11/13/2022]
Abstract
Objective A primary drawback to simultaneous saccharification and fermentation (SSF) processes is the incompatibility of the temperature and pH optima for the hydrolysis and fermentation steps—with the former working best at 50–55 °C and pH 4.5–5.5. Here, nine thermophilic Bacillus and Parageobacillus spp. were evaluated for growth and lactic acid fermentation at high temperature and low pH. The most promising candidate was then carried forward to demonstrate SSF using the cellulosic fraction from municipal solid waste (MSW) as a feedstock. Results B. smithii SA8Eth was identified as the most promising candidate and in a batch SSF maintained at 55 °C and pH 5.0, using a cellulase dose of 5 FPU/g glucan, it produced 5.1 g/L lactic acid from 2% (w/v) MSW cellulosic pulp in TSB media. Conclusion This work has both scientific and industrial relevance, as it evaluates a number of previously untrialled bacterial hosts for their compatibility with lignocellulosic SSF for lactic acid production and successfully identifies B. smithii as a potential candidate for such a process. Electronic supplementary material The online version of this article (10.1007/s10529-020-03049-y) contains supplementary material, which is available to authorized users.
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18
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Cubas-Cano E, Venus J, González-Fernández C, Tomás-Pejó E. Assessment of different Bacillus coagulans strains for l-lactic acid production from defined media and gardening hydrolysates: Effect of lignocellulosic inhibitors. J Biotechnol 2020; 323:9-16. [PMID: 32712129 DOI: 10.1016/j.jbiotec.2020.07.017] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2020] [Revised: 07/07/2020] [Accepted: 07/22/2020] [Indexed: 11/17/2022]
Abstract
Cellulose valorisation has been successfully addressed for years. However, the use of hemicellulosic hydrolysates is limited due to the presence of C5-sugars and inhibitors formed during pretreatment. Bacillus coagulans is one of the few bacteria able to utilize both C6- and C5-sugars to produce l-lactic acid, but its susceptibility to the lignocellulosic inhibitors needs further investigation. For such a purpose, the tolerance of different B. coagulans strains to increasing concentrations of inhibitors is studied. The isolated A162 strain reached the highest l-lactic acid productivity in all cases (up to 2.4 g L-1 h-1), even in presence of 5 g L-1 of furans and phenols. Remarkably, most of furans and phenolic aldehydes were removed from defined media and hemicellulosic gardening hydrolysate after fermentation with A162. Considering the high productivities and the biodetoxifying effect attained, A162 could be pointed out as a great candidate for valorisation of mixed sugars from hemicellulosic hydrolysates with high inhibitors concentration, promoting the implementation of lignocellulosic biorefineries.
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Affiliation(s)
- Enrique Cubas-Cano
- IMDEA Energy Institute, Biotechnological Processes Unit, 28935, Móstoles, Spain
| | - Joachim Venus
- Leibniz Institute for Agricultural Engineering and Bioeconomy e.V. (ATB), 14469, Potsdam, Germany
| | | | - Elia Tomás-Pejó
- IMDEA Energy Institute, Biotechnological Processes Unit, 28935, Móstoles, Spain.
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19
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Ouyang S, Zou L, Qiao H, Shi J, Zheng Z, Ouyang J. One-pot process for lactic acid production from wheat straw by an adapted Bacillus coagulans and identification of genes related to hydrolysate-tolerance. BIORESOURCE TECHNOLOGY 2020; 315:123855. [PMID: 32707506 DOI: 10.1016/j.biortech.2020.123855] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2020] [Revised: 07/12/2020] [Accepted: 07/13/2020] [Indexed: 05/26/2023]
Abstract
In this study, Bacillus coagulans CC17A with highly tolerant to hydrolysate was obtained through adaptive evolution. After 63 generations, the strain CC17A was stably in 45% (v/v) hydrolysate media and could digest multiple inhibitors in the hydrolysate. Based on its promising features, a one-pot process was developed to produce lactic acid (LA) from wheat straw. After dilute acid pretreatment of wheat straw, simultaneous saccharification and co-fermentation was conducted using CC17A without any solid-liquid separation and pre-detoxification. Total 35.50 g LA was produced from 80 g raw substrate and the production yield was as high as 70.9% of theoretical. To elucidate the tolerance mechanism, transcriptomic profiling of CC17A was studied. The highly up-regulated oxidoreductases and phenolic acid decarboxylase are considered to be involved with the inhibitors-tolerance of B. coagulans CC17A.
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Affiliation(s)
- Shuiping Ouyang
- Jiangsu Co-Innovation Center of Efficient Processing and Utilization of Forest Resources, College of Chemical Engineering, Nanjing Forestry University, Nanjing 210037, People's Republic of China
| | - Lihua Zou
- Jiangsu Co-Innovation Center of Efficient Processing and Utilization of Forest Resources, College of Chemical Engineering, Nanjing Forestry University, Nanjing 210037, People's Republic of China
| | - Hui Qiao
- Jiangsu Co-Innovation Center of Efficient Processing and Utilization of Forest Resources, College of Chemical Engineering, Nanjing Forestry University, Nanjing 210037, People's Republic of China
| | - Jinjie Shi
- Jiangsu Co-Innovation Center of Efficient Processing and Utilization of Forest Resources, College of Chemical Engineering, Nanjing Forestry University, Nanjing 210037, People's Republic of China
| | - Zhaojuan Zheng
- Jiangsu Co-Innovation Center of Efficient Processing and Utilization of Forest Resources, College of Chemical Engineering, Nanjing Forestry University, Nanjing 210037, People's Republic of China
| | - Jia Ouyang
- Jiangsu Co-Innovation Center of Efficient Processing and Utilization of Forest Resources, College of Chemical Engineering, Nanjing Forestry University, Nanjing 210037, People's Republic of China.
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20
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Li J, Rong L, Zhao Y, Li S, Zhang C, Xiao D, Foo JL, Yu A. Next-generation metabolic engineering of non-conventional microbial cell factories for carboxylic acid platform chemicals. Biotechnol Adv 2020; 43:107605. [DOI: 10.1016/j.biotechadv.2020.107605] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2020] [Revised: 06/30/2020] [Accepted: 07/27/2020] [Indexed: 01/21/2023]
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21
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Díaz AB, González C, Marzo C, Caro I, Blandino A. Feasibility of exhausted sugar beet pulp as raw material for lactic acid production. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2020; 100:3036-3045. [PMID: 32057099 DOI: 10.1002/jsfa.10334] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2019] [Revised: 02/06/2020] [Accepted: 02/14/2020] [Indexed: 06/10/2023]
Abstract
BACKGROUND Exhausted sugar beet pulp pellets (ESBPP), a sugar industry by-product generated after sugar extraction in the sugar production process, have been used as a raw material for lactic acid (LA) production via hydrolysis and fermentation by Lactobacillus casei. To design a more cost-effective process, simultaneous saccharification and fermentation (SSF) of ESBPP is proposed in the present study. The effects of pH control, nutrient supplementation and solid addition in fed-batch SSF on lactic acid production were investigated. RESULTS The highest LA concentration (26.88 g L-1 ) was reached in fed-batch SSF at a solid/liquid loading of 0.2 g mL-1 , with pH control (by adding 30 g L-1 CaCO3 to the medium) and nutrient supplementation (by adding 20 mL of MRS medium per 100 mL of buffer). Under these conditions, a maximum productivity of 0.63 g L-1 h-1 was achieved, which is 2.7 times higher than that attained in the control experiment (SSF inoculated at time 0 h). However, a slightly lower LA yield was obtained, revealing the need of an increasing dose of enzymes at high solid loading SSF. CONCLUSION An efficient fed-batch SSF strategy with pH control and MRS supplementation is described in the present study, attaining higher LA productivity compared to separate hydrolysis and fermentation and SSF. © 2020 Society of Chemical Industry.
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Affiliation(s)
- Ana Belén Díaz
- Department of Chemical Engineering and Food Technology, IVAGRO Institute, Universidad de Cádiz, Puerto Real, Spain
| | - Claudia González
- Department of Chemical Engineering and Food Technology, IVAGRO Institute, Universidad de Cádiz, Puerto Real, Spain
| | - Cristina Marzo
- Department of Chemical Engineering and Food Technology, IVAGRO Institute, Universidad de Cádiz, Puerto Real, Spain
| | - Ildefonso Caro
- Department of Chemical Engineering and Food Technology, IVAGRO Institute, Universidad de Cádiz, Puerto Real, Spain
| | - Ana Blandino
- Department of Chemical Engineering and Food Technology, IVAGRO Institute, Universidad de Cádiz, Puerto Real, Spain
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22
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Alves de Oliveira R, Schneider R, Hoss Lunelli B, Vaz Rossell CE, Maciel Filho R, Venus J. A Simple Biorefinery Concept to Produce 2G-Lactic Acid from Sugar Beet Pulp (SBP): A High-Value Target Approach to Valorize a Waste Stream. Molecules 2020; 25:E2113. [PMID: 32365990 PMCID: PMC7248869 DOI: 10.3390/molecules25092113] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2020] [Revised: 04/27/2020] [Accepted: 04/28/2020] [Indexed: 12/22/2022] Open
Abstract
Lactic acid is a high-value molecule with a vast number of applications. Its production in the biorefineries model is a possibility for this sector to aggregate value to its production chain. Thus, this investigation presents a biorefinery model based on the traditional sugar beet industry proposing an approach to produce lactic acid from a waste stream. Sugar beet is used to produce sugar and ethanol, and the remaining pulp is sent to animal feed. Using Bacillus coagulans in a continuous fermentation, 2781.01 g of lactic acid was produced from 3916.91 g of sugars from hydrolyzed sugar beet pulp, with a maximum productivity of 18.06 g L-1h-1. Without interfering in the sugar production, ethanol, or lactic acid, it is also possible to produce pectin and phenolic compounds in the biorefinery. The lactic acid produced was purified by a bipolar membrane electrodialysis and the recovery reached 788.80 g/L with 98% w/w purity.
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Affiliation(s)
- Regiane Alves de Oliveira
- Laboratory of Optimization, Design and Advanced Process Control, School of Chemical Engineering, University of Campinas (Unicamp), Avenida Albert Einstein 500, Campinas 13083-852, Brazil;
- Department of Bioengineering, Leibniz Institute for Agricultural Engineering and Bioeconomy e.V. (ATB), Max-Eyth-Allee 100, 14469 Potsdam, Germany;
| | - Roland Schneider
- Department of Bioengineering, Leibniz Institute for Agricultural Engineering and Bioeconomy e.V. (ATB), Max-Eyth-Allee 100, 14469 Potsdam, Germany;
| | - Betânia Hoss Lunelli
- Pontifícia Universidade Católica de Campinas (PUC-Campinas), Centro de Ciências Exatas, Ambientais e de Tecnologias, Faculdade de Química, Rua Professor Doutor Euryclides de Jesus Zerbini 1516, Campinas 13087-571, Brazil;
| | - Carlos Eduardo Vaz Rossell
- Interdisciplinary Center of Energy Planning (NIPE), University of Campinas (Unicamp), Rua Cora Coralina 330, Campinas 13083-896, Brazil;
| | - Rubens Maciel Filho
- Laboratory of Optimization, Design and Advanced Process Control, School of Chemical Engineering, University of Campinas (Unicamp), Avenida Albert Einstein 500, Campinas 13083-852, Brazil;
| | - Joachim Venus
- Department of Bioengineering, Leibniz Institute for Agricultural Engineering and Bioeconomy e.V. (ATB), Max-Eyth-Allee 100, 14469 Potsdam, Germany;
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23
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Shah SSM, Luthfi AAI, Jahim JM, Harun S, Low KO. An improvement in fermentability of acid-hydrolysed hemicellulose from kenaf stem for xylitol production. INTERNATIONAL JOURNAL OF FOOD ENGINEERING 2020. [DOI: 10.1515/ijfe-2019-0230] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
AbstractIn recent years, there has been a growing interest in the use of agricultural biomass for fermentation purposes; however, efficient strategies to counter lignocellulose inhibition are warranted to enhance xylitol production performance. Dilute-acid hydrolysis has been studied to selectively release a significant portion of xylose from hemicellulose, while leaving cellulose and lignin intact. The formation of inhibitory compounds, however, could jeopardise the overall performance during fermentation to produce xylitol. In this study, the fermentability of nitric acid-hydrolysed kenaf stem was substantially improved, through either adaptive evolution of the recombinant Escherichia coli BL21 (DE3) or removal of fermentation inhibitors by detoxification with activated carbon. Both methods were compared to evaluate the superiority in fermentative performance. In the fermentation with detoxified hemicellulosic hydrolysate, the non-adapted strain produced the highest xylitol concentration of up to 6.8 g/L, with 61.5% xylose consumption. The yields of xylitol production involving detoxification were successfully enhanced by 22.6% and by 35.7% compared to those involving adaptive evolution and raw hydrolysate, respectively. The results reported herein suggest that the utilization of detoxified kenaf stem hydrolysate could be advantageous.
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Affiliation(s)
- Siti Syazwani Mohd Shah
- Research Centre of Sustainable Process Technology (CESPRO), Faculty of Engineering and Built Environment, Universiti Kebangsaan, Bangi, Malaysia
| | - Abdullah Amru Indera Luthfi
- Research Centre of Sustainable Process Technology (CESPRO), Faculty of Engineering and Built Environment, Universiti Kebangsaan, Bangi, Malaysia
| | - Jamaliah Md Jahim
- Department of Chemical and Process Engineering, Faculty of Engineering and Built Environment, Universiti Kebangsaan, Bangi, Malaysia
| | - Shuhaida Harun
- Department of Chemical and Process Engineering, Faculty of Engineering and Built Environment, Universiti Kebangsaan, Bangi, Malaysia
| | - Kheng Oon Low
- Malaysia Genome Institute, National Insitutes of Biotechnology Malaysia, Jalan Bangi Lama, Kajang, Malaysia
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Cubas-Cano E, González-Fernández C, Tomás-Pejó E. Evolutionary engineering of Lactobacillus pentosus improves lactic acid productivity from xylose-rich media at low pH. BIORESOURCE TECHNOLOGY 2019; 288:121540. [PMID: 31174085 DOI: 10.1016/j.biortech.2019.121540] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2019] [Revised: 05/20/2019] [Accepted: 05/21/2019] [Indexed: 06/09/2023]
Abstract
Since xylose is the second most abundant sugar in lignocellulose, using microorganisms able to metabolize it into bio-based chemicals like lactic acid is an attractive approach. In this study, Lactobacillus pentosus CECT4023T was evolved to improve its xylose fermentation capacity even at acid pH by adaptive laboratory evolution in repeated anaerobic batch cultures at increasing xylose concentration. The resulting strain (named MAX2) presented between 1.5 and 2-fold more xylose consumption and lactic acid production than the parental strain in 20 g L-1 xylose defined media independently of the initial pH value. When the pH was controlled in bioreactor, lactic acid productivity at 16 h increased 1.4-fold when MAX2 was grown both in xylose defined media and in wheat straw hydrolysate. These results demonstrated the potential of this new strain to produce lactic acid from hemicellulosic substrates at low pH, reducing the need of using neutralizing agents in the process.
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Affiliation(s)
- Enrique Cubas-Cano
- IMDEA Energy Institute, Biotechnological Processes for Energy Production Unit, 28935 Móstoles, Spain.
| | | | - Elia Tomás-Pejó
- IMDEA Energy Institute, Biotechnological Processes for Energy Production Unit, 28935 Móstoles, Spain
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Prasad RK, Chatterjee S, Mazumder PB, Gupta SK, Sharma S, Vairale MG, Datta S, Dwivedi SK, Gupta DK. Bioethanol production from waste lignocelluloses: A review on microbial degradation potential. CHEMOSPHERE 2019; 231:588-606. [PMID: 31154237 DOI: 10.1016/j.chemosphere.2019.05.142] [Citation(s) in RCA: 60] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/07/2018] [Revised: 04/02/2019] [Accepted: 05/17/2019] [Indexed: 05/15/2023]
Abstract
Tremendous explosion of population has led to about 200% increment of total energy consumptions in last twenty-five years. Apart from conventional fossil fuel as limited energy source, alternative non-conventional sources are being explored worldwide to cater the energy requirement. Lignocellulosic biomass conversion for biofuel production is an important alternative energy source due to its abundance in nature and creating less harmful impacts on the environment in comparison to the coal or petroleum-based sources. However, lignocellulose biopolymer, the building block of plants, is a recalcitrant substance and difficult to break into desirable products. Commonly used chemical and physical methods for pretreating the substrate are having several limitations. Whereas, utilizing microbial potential to hydrolyse the biomass is an interesting area of research. Because of the complexity of substrate, several enzymes are required that can act synergistically to hydrolyse the biopolymer producing components like bioethanol or other energy substances. Exploring a range of microorganisms, like bacteria, fungi, yeast etc. that utilizes lignocelluloses for their energy through enzymatic breaking down the biomass, is one of the options. Scientists are working upon designing organisms through genetic engineering tools to integrate desired enzymes into a single organism (like bacterial cell). Studies on designer cellulosomes and bacteria consortia development relating consolidated bioprocessing are exciting to overcome the issue of appropriate lignocellulose digestions. This review encompasses up to date information on recent developments for effective microbial degradation processes of lignocelluloses for improved utilization to produce biofuel (bioethanol in particular) from the most plentiful substances of our planet.
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Affiliation(s)
- Rajesh Kumar Prasad
- Defence Research Laboratory, DRDO, Tezpur, 784001, Assam, India; Assam University, Silchar, 788011, Assam, India
| | | | | | | | - Sonika Sharma
- Defence Research Laboratory, DRDO, Tezpur, 784001, Assam, India
| | | | | | | | - Dharmendra Kumar Gupta
- Gottfried Wilhelm Leibniz Universität Hannover, Institut für Radioökologie und Strahlenschutz (IRS), HerrenhäuserStr. 2, 30419, Hannover, Germany
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Draft Genome Sequence of Bacillus coagulans MA-13, a Thermophilic Lactic Acid Producer from Lignocellulose. Microbiol Resour Announc 2019; 8:8/23/e00341-19. [PMID: 31171617 PMCID: PMC6554604 DOI: 10.1128/mra.00341-19] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023] Open
Abstract
Bacillus coagulans MA-13 is an efficient lactic acid producer which withstands high concentrations of the growth inhibitors formed during the pretreatment of lignocellulosic feedstock. This draft genome sequence is expected to pave the way toward the understanding of mechanisms responsible for the robustness of MA-13 during simultaneous saccharification and fermentation. Bacillus coagulans MA-13 is an efficient lactic acid producer which withstands high concentrations of the growth inhibitors formed during the pretreatment of lignocellulosic feedstock. This draft genome sequence is expected to pave the way toward the understanding of mechanisms responsible for the robustness of MA-13 during simultaneous saccharification and fermentation.
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Gu H, Zhu Y, Peng Y, Liang X, Liu X, Shao L, Xu Y, Xu Z, Liu R, Li J. Physiological mechanism of improved tolerance of Saccharomyces cerevisiae to lignin-derived phenolic acids in lignocellulosic ethanol fermentation by short-term adaptation. BIOTECHNOLOGY FOR BIOFUELS 2019; 12:268. [PMID: 31755875 PMCID: PMC6854637 DOI: 10.1186/s13068-019-1610-9] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2019] [Accepted: 11/04/2019] [Indexed: 05/08/2023]
Abstract
BACKGROUND Phenolic acids are lignin-derived fermentation inhibitors formed during many pretreatment processes of lignocellulosic biomass. In this study, vanillic, p-hydroxybenzoic, and syringic acids were selected as the model compounds of phenolic acids, and the effect of short-term adaptation strategies on the tolerance of S. cerevisiae to phenolic acids was investigated. The mechanism of phenolic acids tolerance in the adapted yeast strains was studied at the morphological and physiological levels. RESULTS The multiple phenolic acids exerted the synergistic inhibitory effect on the yeast cell growth. In particular, a significant interaction between vanillic and hydroxybenzoic acids was found. The optimal short-term adaptation strategies could efficiently improve the growth and fermentation performance of the yeast strain not only in the synthetic media with phenolic acids, but also in the simultaneous saccharification and ethanol fermentation of corncob residue. Morphological analysis showed that phenolic acids caused the parental strain to generate many cytoplasmic membrane invaginations with crack at the top of these sites and some mitochondria gathered around. The adapted strain presented the thicker cell wall and membrane and smaller cell size than those of the parental strain. In particular, the cytoplasmic membrane generated many little protrusions with regular shape. The cytoplasmic membrane integrity was analyzed by testing the relative electrical conductivity, leakage of intracellular substance, and permeation of fluorescent probe. The results indicated that the short-term adaptation improved the membrane integrity of yeast cell. CONCLUSION The inhibition mechanism of phenolic acid might be attributed to the combined effect of the cytoplasmic membrane damage and the intracellular acidification. The short-term adaptation strategy with varied stressors levels and adaptive processes accelerated the stress response of yeast cell structure to tolerate phenolic acids. This strategy will contribute to the development of robust microbials for biofuel production from lignocellulosic biomass.
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Affiliation(s)
- Hanqi Gu
- Department of Biology and Food Science, Hebei Normal University for Nationalities, Chengde, 067000 Hebei China
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai, 200237 China
| | - Yuyong Zhu
- Department of Biology and Food Science, Hebei Normal University for Nationalities, Chengde, 067000 Hebei China
| | - Yanfang Peng
- Department of Biology and Food Science, Hebei Normal University for Nationalities, Chengde, 067000 Hebei China
| | - Xiujun Liang
- Basic Medical Institute, Chengde Medical University, Chengde, 067000 Hebei China
| | - Xiaoguang Liu
- Department of Biology and Food Science, Hebei Normal University for Nationalities, Chengde, 067000 Hebei China
| | - Lingzhi Shao
- Department of Biology and Food Science, Hebei Normal University for Nationalities, Chengde, 067000 Hebei China
| | - Yanyan Xu
- Department of Biology and Food Science, Hebei Normal University for Nationalities, Chengde, 067000 Hebei China
| | - Zhaohe Xu
- Department of Biology and Food Science, Hebei Normal University for Nationalities, Chengde, 067000 Hebei China
| | - Ran Liu
- Department of Biology and Food Science, Hebei Normal University for Nationalities, Chengde, 067000 Hebei China
| | - Jie Li
- Department of Biology and Food Science, Hebei Normal University for Nationalities, Chengde, 067000 Hebei China
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