1
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Zamani E, Ksantini N, Sheehy G, Ember KJI, Baloukas B, Zabeida O, Trang T, Mahfoud M, Sapieha JE, Martinu L, Leblond F. Spectral effects and enhancement quantification in healthy human saliva with surface-enhanced Raman spectroscopy using silver nanopillar substrates. Lasers Surg Med 2024; 56:206-217. [PMID: 38073098 DOI: 10.1002/lsm.23746] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2023] [Revised: 11/15/2023] [Accepted: 11/21/2023] [Indexed: 02/21/2024]
Abstract
OBJECTIVES Raman spectroscopy as a diagnostic tool for biofluid applications is limited by low inelastic scattering contributions compared to the fluorescence background from biomolecules. Surface-enhanced Raman spectroscopy (SERS) can increase Raman scattering signals, thereby offering the potential to reduce imaging times. We aimed to evaluate the enhancement related to the plasmonic effect and quantify the improvements in terms of spectral quality associated with SERS measurements in human saliva. METHODS Dried human saliva was characterized using spontaneous Raman spectroscopy and SERS. A fabrication protocol was implemented leading to the production of silver (Ag) nanopillar substrates by glancing angle deposition. Two different imaging systems were used to interrogate saliva from 161 healthy donors: a custom single-point macroscopic system and a Raman micro-spectroscopy instrument. Quantitative metrics were established to compare spontaneous RS and SERS measurements: the Raman spectroscopy quality factor (QF), the photonic count rate (PR), the signal-to-background ratio (SBR). RESULTS SERS measurements acquired with an excitation energy four times smaller than with spontaneous RS resulted in improved QF, PR values an order of magnitude larger and a SBR twice as large. The SERS enhancement reached 100×, depending on which Raman bands were considered. CONCLUSIONS Single-point measurement of dried saliva with silver nanopillars substrates led to reproducible SERS measurements, paving the way to real-time tools of diagnosis in human biofluids.
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Affiliation(s)
- Esmat Zamani
- Department of Engineering Physics, Polytechnique Montreal, Montréal, Canada
- Centre de Recherche du Centre Hospitalier de l'Université de Montréal, Montreal, Canada
| | - Nassim Ksantini
- Department of Engineering Physics, Polytechnique Montreal, Montréal, Canada
- Centre de Recherche du Centre Hospitalier de l'Université de Montréal, Montreal, Canada
| | - Guillaume Sheehy
- Department of Engineering Physics, Polytechnique Montreal, Montréal, Canada
- Centre de Recherche du Centre Hospitalier de l'Université de Montréal, Montreal, Canada
| | - Katherine J I Ember
- Department of Engineering Physics, Polytechnique Montreal, Montréal, Canada
- Centre de Recherche du Centre Hospitalier de l'Université de Montréal, Montreal, Canada
| | - Bill Baloukas
- Department of Engineering Physics, Polytechnique Montreal, Montréal, Canada
| | - Oleg Zabeida
- Department of Engineering Physics, Polytechnique Montreal, Montréal, Canada
| | - Tran Trang
- Department of Engineering Physics, Polytechnique Montreal, Montréal, Canada
- Centre de Recherche du Centre Hospitalier de l'Université de Montréal, Montreal, Canada
| | - Myriam Mahfoud
- Department of Engineering Physics, Polytechnique Montreal, Montréal, Canada
- Centre de Recherche du Centre Hospitalier de l'Université de Montréal, Montreal, Canada
| | | | - Ludvik Martinu
- Department of Engineering Physics, Polytechnique Montreal, Montréal, Canada
| | - Frédéric Leblond
- Department of Engineering Physics, Polytechnique Montreal, Montréal, Canada
- Centre de Recherche du Centre Hospitalier de l'Université de Montréal, Montreal, Canada
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2
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Lu M, Zhang Y, Li J, Li Y, Wei H. Time-domain fit for improved contrast in quantitative coherent anti-Stokes Raman spectroscopy. OPTICS EXPRESS 2023; 31:25571-25584. [PMID: 37710440 DOI: 10.1364/oe.493067] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2023] [Accepted: 07/01/2023] [Indexed: 09/16/2023]
Abstract
Among the multiple coherent anti-Stokes Raman scattering (CARS) techniques that provide important quantitative molecular microscopic contrast, Fourier-transform CARS (FT-CARS) stands out with the immunity to nonresonant background and high-speed detection capacity. However, by using FFT for the exponentially decaying signal, FT-CARS faces the dilemma of choosing the delay range of the signal for high SNR or high resolution, the lack of either of which is detrimental to the quantitative contrast of imaging. Here, time-domain fit (TDF) is proposed to fully utilize the time-domain information of FT-CARS, providing optimized SNR and vibrational feature distinguishment. The capacity of noise restriction and feature distinguishment of the traditional FFT and the proposed TDF is analysed with theoretical examination and simulation. Exploiting the matrix pencil extraction of vibrational parameters, TDF is performed for quantitative analysis for simulated FT-CARS signal, and shows more accurate and consistent performance than the FFT method. FT-CARS coupled with TDF intensity evaluation holds the promise to provide micro-spectroscopic contrast with higher SNR and free of spectral overlapping, contributing to a more powerful diagnostic tool.
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3
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Bisogno S, Gąsior Ł, Ptak GE. Nile Red and BODIPY Staining of Lipid Droplets in Mouse Oocytes and Embryos. Methods Mol Biol 2023; 2566:205-212. [PMID: 36152253 DOI: 10.1007/978-1-0716-2675-7_16] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Lipid droplets (LDs) are intracellular structures composed of hydrophobic lipids. Their amount in oocytes and embryos varies among the mammalian species and even among different strains of the same species. Here we describe a method to stain LDs, which can be applied to previously fixed mouse oocytes and embryos. This method is based on fluorescent dyes, Nile red and BODIPY, which allow visualization and quantification of LDs using conventional and confocal fluorescence microscopy.
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Affiliation(s)
- Simona Bisogno
- Malopolska Centre of Biotechnology, Jagiellonian University, Krakow, Poland
| | - Łukasz Gąsior
- Malopolska Centre of Biotechnology, Jagiellonian University, Krakow, Poland
| | - Grażyna E Ptak
- Malopolska Centre of Biotechnology, Jagiellonian University, Krakow, Poland.
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4
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Stanek E, Pacia MZ, Kaczor A, Czamara K. The distinct phenotype of primary adipocytes and adipocytes derived from stem cells of white adipose tissue as assessed by Raman and fluorescence imaging. Cell Mol Life Sci 2022; 79:383. [PMID: 35752714 PMCID: PMC9233632 DOI: 10.1007/s00018-022-04391-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2022] [Revised: 05/09/2022] [Accepted: 05/23/2022] [Indexed: 11/25/2022]
Abstract
Spectroscopy-based analysis of chemical composition of cells is a tool still scarcely used in biological sciences, although it provides unique information about the cell identity accessible in vivo and in situ. Through time-lapse spectroscopic monitoring of adipogenesis in brown and white adipose tissue-derived stem cells we have demonstrated that considerable chemical and functional changes occur along with cells differentiation and maturation, yet yielding mature adipocytes with a similar chemical composition, independent of the cellular origin (white or brown adipose tissue). However, in essence, these stem cell-derived adipocytes have a markedly different chemical composition compared to mature primary adipocytes. The consequences of this different chemical (and, hence, functional) identity have great importance in the context of selecting a suitable methodology for adipogenesis studies, particularly in obesity-related research.
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Affiliation(s)
- Ewa Stanek
- Jagiellonian Centre of Experimental Therapeutics (JCET), Jagiellonian University, 14 Bobrzynskiego Str., 30-348, Kraków, Poland
| | - Marta Z Pacia
- Jagiellonian Centre of Experimental Therapeutics (JCET), Jagiellonian University, 14 Bobrzynskiego Str., 30-348, Kraków, Poland
| | - Agnieszka Kaczor
- Jagiellonian Centre of Experimental Therapeutics (JCET), Jagiellonian University, 14 Bobrzynskiego Str., 30-348, Kraków, Poland
- Faculty of Chemistry, Jagiellonian University, 2 Gronostajowa Str., 30-387, Kraków, Poland
| | - Krzysztof Czamara
- Jagiellonian Centre of Experimental Therapeutics (JCET), Jagiellonian University, 14 Bobrzynskiego Str., 30-348, Kraków, Poland.
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5
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Boorman D, Pope I, Masia F, Langbein W, Hood S, Borri P, Watson P. Hyperspectral CARS microscopy and quantitative unsupervised analysis of deuterated and non-deuterated fatty acid storage in human cells. J Chem Phys 2021; 155:224202. [PMID: 34911324 DOI: 10.1063/5.0065950] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Coherent anti-Stokes Raman scattering (CARS) implemented as a vibrational micro-spectroscopy modality eradicates the need for potentially perturbative fluorescent labeling while still providing high-resolution, chemically specific images of biological samples. Isotopic substitution of hydrogen atoms with deuterium introduces minimal change to molecular structures and can be coupled with CARS microscopy to increase chemical contrast. Here, we investigate HeLa cells incubated with non-deuterated or deuterium-labeled fatty acids, using an in-house-developed hyperspectral CARS microscope coupled with an unsupervised quantitative data analysis algorithm, to retrieve Raman susceptibility spectra and concentration maps of chemical components in physically meaningful units. We demonstrate that our unsupervised analysis retrieves the susceptibility spectra of the specific fatty acids, both deuterated and non-deuterated, in good agreement with reference Raman spectra measured in pure lipids. Our analysis, using the cell-silent spectral region, achieved excellent chemical specificity despite having no prior knowledge and considering the complex intracellular environment inside cells. The quantitative capabilities of the analysis allowed us to measure the concentration of deuterated and non-deuterated fatty acids stored within cytosolic lipid droplets over a 24 h period. Finally, we explored the potential use of deuterium-labeled lipid droplets for non-invasive cell tracking, demonstrating an effective application of the technique for distinguishing between cells in a mixed population over a 16 h period. These results further demonstrate the chemically specific capabilities of hyperspectral CARS microscopy to characterize and distinguish specific lipid types inside cells using an unbiased quantitative data analysis methodology.
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Affiliation(s)
- Dale Boorman
- School of Biosciences, Sir Martin Evans Building, Cardiff University, Museum Avenue, Cardiff CF10 3AX, United Kingdom
| | - Iestyn Pope
- School of Biosciences, Sir Martin Evans Building, Cardiff University, Museum Avenue, Cardiff CF10 3AX, United Kingdom
| | - Francesco Masia
- School of Biosciences, Sir Martin Evans Building, Cardiff University, Museum Avenue, Cardiff CF10 3AX, United Kingdom
| | - Wolfgang Langbein
- School of Physics and Astronomy, Cardiff University, The Parade, Cardiff CF24 3AA, United Kingdom
| | - Steve Hood
- GSK Medicines Research Centre, Gunnels Wood Road, Stevenage, Hertfordshire SG1 2NY, United Kingdom
| | - Paola Borri
- School of Biosciences, Sir Martin Evans Building, Cardiff University, Museum Avenue, Cardiff CF10 3AX, United Kingdom
| | - Peter Watson
- School of Biosciences, Sir Martin Evans Building, Cardiff University, Museum Avenue, Cardiff CF10 3AX, United Kingdom
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6
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Boorman D, Pope I, Masia F, Watson P, Borri P, Langbein W. Quantification of the nonlinear susceptibility of the hydrogen and deuterium stretch vibration for biomolecules in coherent Raman micro-spectroscopy. JOURNAL OF RAMAN SPECTROSCOPY : JRS 2021; 52:1540-1551. [PMID: 36339900 PMCID: PMC9627839 DOI: 10.1002/jrs.6164] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2021] [Revised: 04/12/2021] [Accepted: 05/16/2021] [Indexed: 06/14/2023]
Abstract
Deuterium labelling is increasingly used in coherent Raman imaging of complex systems, such as biological cells and tissues, to improve chemical specificity. Nevertheless, quantitative coherent Raman susceptibility spectra for deuterated compounds have not been previously reported. Interestingly, it is expected theoretically that -D stretch vibrations have a Raman susceptibility lower than -H stretch vibrations, with the area of their imaginary part scaling with their wavenumber, which is shifted from around 2900 cm-1 for C-H into the silent region around 2100 cm-1 for C-D. Here, we report quantitative measurements of the nonlinear susceptibility of water, succinic acid, oleic acid, linoleic acid and deuterated isoforms. We show that the -D stretch vibration has indeed a lower area, consistent with the frequency reduction due to the doubling of atomic mass from hydrogen to deuterium. This finding elucidates an important trade-off between chemical specificity and signal strength in the adoption of deuterium labelling as an imaging strategy for coherent Raman microscopy.
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Affiliation(s)
- Dale Boorman
- School of BiosciencesCardiff UniversityCardiffUK
| | - Iestyn Pope
- School of BiosciencesCardiff UniversityCardiffUK
| | | | - Peter Watson
- School of BiosciencesCardiff UniversityCardiffUK
| | - Paola Borri
- School of BiosciencesCardiff UniversityCardiffUK
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7
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Zhang C, Aldana-Mendoza JA. Coherent Raman scattering microscopy for chemical imaging of biological systems. JPHYS PHOTONICS 2021. [DOI: 10.1088/2515-7647/abfd09] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023] Open
Abstract
Abstract
Coherent Raman scattering (CRS) processes, including both the coherent anti-Stokes Raman scattering and stimulated Raman scattering, have been utilized in state-of-the-art microscopy platforms for chemical imaging of biological samples. The key advantage of CRS microscopy over fluorescence microscopy is label-free, which is an attractive characteristic for modern biological and medical sciences. Besides, CRS has other advantages such as higher selectivity to metabolites, no photobleaching, and narrow peak width. These features have brought fast-growing attention to CRS microscopy in biological research. In this review article, we will first briefly introduce the history of CRS microscopy, and then explain the theoretical background of the CRS processes in detail using the classical approach. Next, we will cover major instrumentation techniques of CRS microscopy. Finally, we will enumerate examples of recent applications of CRS imaging in biological and medical sciences.
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8
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Pope I, Masia F, Ewan K, Jimenez-Pascual A, Dale TC, Siebzehnrubl FA, Borri P, Langbein W. Identifying subpopulations in multicellular systems by quantitative chemical imaging using label-free hyperspectral CARS microscopy. Analyst 2021; 146:2277-2291. [PMID: 33617612 PMCID: PMC8359792 DOI: 10.1039/d0an02381g] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2020] [Accepted: 02/10/2021] [Indexed: 12/21/2022]
Abstract
Quantitative hyperspectral coherent Raman scattering microscopy merges imaging with spectroscopy and utilises quantitative data analysis algorithms to extract physically meaningful chemical components, spectrally and spatially-resolved, with sub-cellular resolution. This label-free non-invasive method has the potential to significantly advance our understanding of the complexity of living multicellular systems. Here, we have applied an in-house developed hyperspectral coherent anti-Stokes Raman scattering (CARS) microscope, combined with a quantitative data analysis pipeline, to imaging living mouse liver organoids as well as fixed mouse brain tissue sections xenografted with glioblastoma cells. We show that the method is capable of discriminating different cellular sub-populations, on the basis of their chemical content which is obtained from an unsupervised analysis, i.e. without prior knowledge. Specifically, in the organoids, we identify sub-populations of cells at different phases in the cell cycle, while in the brain tissue, we distinguish normal tissue from cancer cells, and, notably, tumours derived from transplanted cancer stem cells versus non-stem glioblastoma cells. The ability of the method to identify different sub-populations was validated by correlative fluorescence microscopy using fluorescent protein markers. These examples expand the application portfolio of quantitative chemical imaging by hyperspectral CARS microscopy to multicellular systems of significant biomedical relevance, pointing the way to new opportunities in non-invasive disease diagnostics.
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Affiliation(s)
- Iestyn Pope
- Cardiff University, School of Biosciences, Sir Martin Evans Building, Museum Avenue, Cardiff CF10 3AX, UK.
| | - Francesco Masia
- Cardiff University, School of Biosciences, Sir Martin Evans Building, Museum Avenue, Cardiff CF10 3AX, UK.
| | - Kenneth Ewan
- Cardiff University, School of Biosciences, Sir Martin Evans Building, Museum Avenue, Cardiff CF10 3AX, UK.
| | - Ana Jimenez-Pascual
- Cardiff University, School of Biosciences, European Cancer Stem Cell Research Institute, Hadyn Ellis Building, Maindy Rd, Cardiff CF24 4HQ, UK
| | - Trevor C Dale
- Cardiff University, School of Biosciences, Sir Martin Evans Building, Museum Avenue, Cardiff CF10 3AX, UK.
| | - Florian A Siebzehnrubl
- Cardiff University, School of Biosciences, European Cancer Stem Cell Research Institute, Hadyn Ellis Building, Maindy Rd, Cardiff CF24 4HQ, UK
| | - Paola Borri
- Cardiff University, School of Biosciences, Sir Martin Evans Building, Museum Avenue, Cardiff CF10 3AX, UK.
| | - Wolfgang Langbein
- Cardiff University, School of Physics & Astronomy, The Parade, Cardiff CF24 3AA, UK.
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9
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Zhang C, Boppart SA. Dynamic Signatures of Lipid Droplets as New Markers to Quantify Cellular Metabolic Changes. Anal Chem 2020; 92:15943-15952. [PMID: 33232121 DOI: 10.1021/acs.analchem.0c03366] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
The metabolic properties of live cells are very susceptible to intra- or extracellular perturbations, making their measurements challenging tasks. We show that the dynamics of lipid droplets (LDs) carry information to measure the lipid metabolism of live cells. Coherent anti-Stokes Raman scattering microscopy was used to statistically quantify LD dynamics in living cells in a label-free manner. We introduce dynamic signatures of cells derived from the LD displacement, speed, travel length, and directionality, which allows for the detection of cellular changes induced by stimuli such as fluorescent labeling, temperature change, starvation, and chemical treatment. Histogram fittings of the dynamic signatures using log-normal distribution functions provide quantification of changes in cellular metabolic states. The LD dynamics also enable separation of subpopulations of LDs correlated with different functions. We demonstrate that LD dynamics measured by chemical imaging are new markers to quantify the metabolic changes in live cells.
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Affiliation(s)
- Chi Zhang
- Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, 405 N Mathews Ave, Urbana, Illinois 61801, United States
| | - Stephen A Boppart
- Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, 405 N Mathews Ave, Urbana, Illinois 61801, United States
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10
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Camp CH, Bender JS, Lee YJ. Real-time and high-throughput Raman signal extraction and processing in CARS hyperspectral imaging. OPTICS EXPRESS 2020; 28:20422-20437. [PMID: 32680102 PMCID: PMC9810127 DOI: 10.1364/oe.397606] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/13/2020] [Accepted: 06/19/2020] [Indexed: 06/11/2023]
Abstract
We present a new collection of processing techniques, collectively "factorized Kramers-Kronig and error correction" (fKK-EC), for (a) Raman signal extraction, (b) denoising, and (c) phase- and scale-error correction in coherent anti-Stokes Raman scattering (CARS) hyperspectral imaging and spectroscopy. These new methods are orders-of-magnitude faster than conventional methods and are capable of real-time performance, owing to the unique core concept: performing all processing on a small basis vector set and using matrix/vector multiplication afterwards for direct and fast transformation of the entire dataset. Experimentally, we demonstrate that a 703026 spectra image of chicken cartilage can be processed in 70 s (≈ 0.1 ms / spectrum), which is ≈ 70 times faster than with the conventional workflow (≈7.0 ms / spectrum). Additionally, we discuss how this method may be used for machine learning (ML) by re-using the transformed basis vector sets with new data. Using this ML paradigm, the same tissue image was processed (post-training) in ≈ 33 s, which is a speed-up of ≈ 150 times when compared with the conventional workflow.
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11
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Lloyd D, Millet CO, Williams CF, Hayes AJ, Pope SJA, Pope I, Borri P, Langbein W, Olsen LF, Isaacs MD, Lunding A. Functional imaging of a model unicell: Spironucleus vortens as an anaerobic but aerotolerant flagellated protist. Adv Microb Physiol 2020; 76:41-79. [PMID: 32408947 DOI: 10.1016/bs.ampbs.2020.01.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Abstract
Advances in optical microscopy are continually narrowing the chasm in our appreciation of biological organization between the molecular and cellular levels, but many practical problems are still limiting. Observation is always limited by the rapid dynamics of ultrastructural modifications of intracellular components, and often by cell motility: imaging of the unicellular protist parasite of ornamental fish, Spironucleus vortens, has proved challenging. Autofluorescence of nicotinamide nucleotides and flavins in the 400-580 nm region of the visible spectrum, is the most useful indicator of cellular redox state and hence vitality. Fluorophores emitting in the red or near-infrared (i.e., phosphors) are less damaging and more penetrative than many routinely employed fluors. Mountants containing free radical scavengers minimize fluorophore photobleaching. Two-photon excitation provides a small focal spot, increased penetration, minimizes photon scattering and enables extended observations. Use of quantum dots clarifies the competition between endosomal uptake and exosomal extrusion. Rapid motility (161 μm/s) of the organism makes high resolution of ultrastructure difficult even at high scan speeds. Use of voltage-sensitive dyes determining transmembrane potentials of plasma membrane and hydrogenosomes (modified mitochondria) is also hindered by intracellular motion and controlled anesthesia perturbs membrane organization. Specificity of luminophore binding is always questionable; e.g. cationic lipophilic species widely used to measure membrane potentials also enter membrane-bounded neutral lipid droplet-filled organelles. This appears to be the case in S. vortens, where Coherent Anti-Stokes Raman Scattering (CARS) micro-spectroscopy unequivocally images the latter and simultaneous provides spectral identification at 2840 cm-1. Secondary Harmonic Generation highlights the highly ordered structure of the flagella.
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Affiliation(s)
- David Lloyd
- School of Biosciences, Cardiff University, Cardiff, Wales, United Kingdom; School of Engineering, Cardiff, Wales, United Kingdom
| | - Coralie O Millet
- School of Biosciences, Cardiff University, Cardiff, Wales, United Kingdom
| | | | - Anthony J Hayes
- School of Biosciences, Cardiff University, Cardiff, Wales, United Kingdom
| | - Simon J A Pope
- School of Chemistry, Main Building, Cardiff University, Cardiff, Wales, United Kingdom
| | - Iestyn Pope
- School of Biosciences, Cardiff University, Cardiff, Wales, United Kingdom
| | - Paola Borri
- School of Biosciences, Cardiff University, Cardiff, Wales, United Kingdom
| | - Wolfgang Langbein
- School of Physics and Astronomy, Cardiff University, Cardiff, Wales, United Kingdom
| | - Lars Folke Olsen
- Biochemistry and Molecular Biology, University of Southern Denmark, Odense M, Denmark
| | - Marc D Isaacs
- School of Biosciences, Cardiff University, Cardiff, Wales, United Kingdom
| | - Anita Lunding
- Biochemistry and Molecular Biology, University of Southern Denmark, Odense M, Denmark
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12
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Raman spectroscopy-based approach to study the female gamete. Theriogenology 2020; 150:268-275. [PMID: 32088036 DOI: 10.1016/j.theriogenology.2020.01.059] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2020] [Accepted: 01/28/2020] [Indexed: 11/20/2022]
Abstract
In the last years, an increasing interest has emerged on the development of new non-invasive methods for the assessment of oocyte quality in order to improve outcomes of assisted reproductive technologies (ARTs) either in medical or veterinary fields. Raman microspectroscopy (RMS) has been proposed as a promising tool for the examination of the mammalian female gamete and identification of markers of its developmental competence. This technique provides a unique spectral fingerprint indicative of molecular composition of the cell and allows probing subcellular compartments. Studies have been carried out analysing by RMS fixed or living oocytes derived from different animal models. RMS imaging has been successfully applied to discriminate the biochemical changes of the global molecular architecture of mouse oocytes at different stages of maturation and those occurring in different conditions of maturation and oocyte aging. RMS can also detect modifications of specific structural components, including the oocyte zona pellucida and F-actin subcortical cytoskeleton in fresh sheep oocytes and those underwent to vitrification procedures. Finally, the recent application of Coherent anti-Stokes Raman scattering (CARS) microscopy for examination of oocyte lipid component will be briefly discussed. CARS overcomes some limits of RMS providing vibrational and spectral information with higher sensitivity, spatial resolution which is ideal to study living oocytes. This review summarizes the research on RMS approaches for oocyte evaluation showing the high potential use, current limitations and new improvements.
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13
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Quantitative Mapping of Triacylglycerol Chain Length and Saturation Using Broadband CARS Microscopy. Biophys J 2019; 116:2346-2355. [PMID: 31153590 DOI: 10.1016/j.bpj.2019.04.036] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2018] [Revised: 03/25/2019] [Accepted: 04/25/2019] [Indexed: 01/15/2023] Open
Abstract
Lipid droplets (LDs), present in many cell types, are highly dynamic organelles that store neutral lipids, primarily triacylglycerols (TAGs). With the discovery of new LD functions (e.g., in immune response, protein clearage, and occurrence with disease), new methods to study LD chemical composition in situ are necessary. We present an approach for in situ, quantitative TAG analysis using label-free, coherent Raman microscopy that allows deciphering LD TAG composition in different biochemically complex samples with submicrometer spatial resolution. Employing a set of standard TAGs, we generate a spectral training matrix capturing the variation caused in Raman-like spectra by TAG backbone, chain length, and number of double bonds per chain, as well as the presence of proteins or other diluting molecules. Comparing our fitting approach to gas chromatography measurements for mixtures of standard TAGs and food oils, we find the root mean-square error for the prediction of TAG chemistry to be 0.69 CH2 and 0.15 #C=C. When progressing to more complex samples such as oil emulsions and LDs in various eukaryotic cells, we find good agreement with bulk gas chromatography measurements. For differentiated adipocytes, we find a significant increase in the number of double bonds in small LDs (below 2 μm in diameter) compared to large LDs (above 2 μm in diameter). Coupled with a relatively limited sample preparation requirement, this approach should enable rapid and accurate TAG LD analysis for a variety of cell biology and technological applications.
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Karuna A, Masia F, Wiltshire M, Errington R, Borri P, Langbein W. Label-Free Volumetric Quantitative Imaging of the Human Somatic Cell Division by Hyperspectral Coherent Anti-Stokes Raman Scattering. Anal Chem 2019; 91:2813-2821. [PMID: 30624901 DOI: 10.1021/acs.analchem.8b04706] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Quantifying the chemical composition of unstained intact tissue and cellular samples with high spatio-temporal resolution in three dimensions would provide a step change in cell and tissue analytics critical to progress the field of cell biology. Label-free optical microscopy offers the required resolution and noninvasiveness, yet quantitative imaging with chemical specificity is a challenging endeavor. In this work, we show that hyperspectral coherent anti-Stokes Raman scattering (CARS) microscopy can be used to provide quantitative volumetric imaging of human osteosarcoma cells at various stages through cell division, a fundamental component of the cell cycle progress resulting in the segregation of cellular content to produce two progeny. We have developed and applied a quantitative data analysis method to produce volumetric three-dimensional images of the chemical composition of the dividing cell in terms of water, proteins, DNAP (a mixture of proteins and DNA, similar to chromatin), and lipids. We then used these images to determine the dry masses of the corresponding organic components. The attribution of proteins and DNAP components was validated using specific well-characterized fluorescent probes, by comparison with correlative two-photon fluorescence microscopy of DNA and mitochondria. Furthermore, we map the same chemical components under perturbed conditions, employing a drug that interferes directly with cell division (Taxol), showing its influence on cell organization and the masses of proteins, DNAP, and lipids.
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Affiliation(s)
- Arnica Karuna
- School of Physics and Astronomy , Cardiff University , The Parade , Cardiff CF24 3AA , United Kingdom
| | - Francesco Masia
- School of Physics and Astronomy , Cardiff University , The Parade , Cardiff CF24 3AA , United Kingdom
| | - Marie Wiltshire
- Division of Cancer and Genetics, School of Medicine , Cardiff University , Heath Park , Cardiff CF14 4XN , United Kingdom
| | - Rachel Errington
- Division of Cancer and Genetics, School of Medicine , Cardiff University , Heath Park , Cardiff CF14 4XN , United Kingdom
| | - Paola Borri
- School of Biosciences , Cardiff University , Museum Avenue , Cardiff CF10 3AX , United Kingdom
| | - Wolfgang Langbein
- School of Physics and Astronomy , Cardiff University , The Parade , Cardiff CF24 3AA , United Kingdom
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15
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Smith PJ, Darzynkiewicz Z, Errington RJ. Nuclear cytometry and chromatin organization. Cytometry A 2018; 93:771-784. [PMID: 30144297 DOI: 10.1002/cyto.a.23521] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2018] [Revised: 05/25/2018] [Accepted: 06/13/2018] [Indexed: 12/18/2022]
Abstract
The nuclear-targeting chemical probe, for the detection and quantification of DNA within cells, has been a mainstay of cytometry-from the colorimetric Feulgen stain to smart fluorescent agents with tuned functionality. The level of nuclear structure and function at which the probe aims to readout, or indeed at which a DNA-targeted drug acts, is shadowed by a wide range of detection modalities and analytical methods. These methods are invariably limited in terms of the resolution attainable versus the volume occupied by targeted chromatin structures. The scalar challenge arises from the need to understand the extent and different levels of compaction of genomic DNA and how such structures can be re-modeled, reported, or even perturbed by both probes and drugs. Nuclear cytometry can report on the complex levels of chromatin order, disorder, disassembly, and even active disruption by probes and drugs. Nuclear probes can report defining features of clinical and therapeutic interest as in NETosis and other cell death processes. New cytometric approaches continue to bridge the scalar challenges of analyzing chromatin organization. Advances in super-resolution microscopy address the resolution and depth of analysis issues in cellular systems. Typical of recent insights into chromatin organization enabled by exploiting a DNA interacting probe is ChromEM tomography (ChromEMT). ChromEMT uses the unique properties of the anthraquinone-based cytometric dye DRAQ5™ to reveal that local and global 3D chromatin structures effect differences in compaction. The focus of this review is nuclear and chromatin cytometry, with linked reference to DNA targeting probes and drugs as exemplified by the anthracenediones.
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Affiliation(s)
- Paul J Smith
- Division of Cancer and Genetics, School of Medicine, Cardiff University, Cardiff, CF14 4XN, UK
| | - Zbigniew Darzynkiewicz
- Department of Pathology, Brander Cancer Research Institute, New York Medical College, Valhalla, New York, 10595
| | - Rachel J Errington
- Division of Cancer and Genetics, School of Medicine, Cardiff University, Cardiff, CF14 4XN, UK
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16
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Masia F, Pope I, Watson P, Langbein W, Borri P. Bessel-Beam Hyperspectral CARS Microscopy with Sparse Sampling: Enabling High-Content High-Throughput Label-Free Quantitative Chemical Imaging. Anal Chem 2018; 90:3775-3785. [PMID: 29505230 DOI: 10.1021/acs.analchem.7b04039] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Microscopy-based high-content and high-throughput analysis of cellular systems plays a central role in drug discovery. However, for contrast and specificity, the majority of assays require a fluorescent readout which always comes with the risk of alteration of the true biological conditions. In this work, we demonstrate a label-free imaging platform which combines chemically specific hyperspectral coherent anti-Stokes Raman scattering microscopy with sparse sampling and Bessel beam illumination. This enabled us to screen multiwell plates at high speed, while retaining the high-content chemical analysis of hyperspectral imaging. To demonstrate the practical applicability of the method we addressed a critical side effect in drug screens, namely, drug-induced lipid storage within hepatic tissue. We screened 15 combinations of drugs and neutral lipids added to human HepG2 liver cells and developed a high-content quantitative data analysis pipeline which extracted the spectra and spatial distributions of lipid and protein components. We then used their combination to train a support vector machine discriminative algorithm. Classification of the drug responses in terms of phospholipidosis versus steatosis was achieved in a completely label-free assay.
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Affiliation(s)
- Francesco Masia
- School of Physics and Astronomy , Cardiff University , The Parade , Cardiff CF24 3AA , U.K
| | - Iestyn Pope
- School of Biosciences , Cardiff University , Museum Avenue , Cardiff CF10 3AX , U.K
| | - Peter Watson
- School of Biosciences , Cardiff University , Museum Avenue , Cardiff CF10 3AX , U.K
| | - Wolfgang Langbein
- School of Physics and Astronomy , Cardiff University , The Parade , Cardiff CF24 3AA , U.K
| | - Paola Borri
- School of Biosciences , Cardiff University , Museum Avenue , Cardiff CF10 3AX , U.K
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17
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Moura CC, Tare RS, Oreffo ROC, Mahajan S. Raman spectroscopy and coherent anti-Stokes Raman scattering imaging: prospective tools for monitoring skeletal cells and skeletal regeneration. J R Soc Interface 2017; 13:rsif.2016.0182. [PMID: 27170652 DOI: 10.1098/rsif.2016.0182] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2016] [Accepted: 04/13/2016] [Indexed: 12/20/2022] Open
Abstract
The use of skeletal stem cells (SSCs) for cell-based therapies is currently one of the most promising areas for skeletal disease treatment and skeletal tissue repair. The ability for controlled modification of SSCs could provide significant therapeutic potential in regenerative medicine, with the prospect to permanently repopulate a host with stem cells and their progeny. Currently, SSC differentiation into the stromal lineages of bone, fat and cartilage is assessed using different approaches that typically require cell fixation or lysis, which are invasive or even destructive. Raman spectroscopy and coherent anti-Stokes Raman scattering (CARS) microscopy present an exciting alternative for studying biological systems in their natural state, without any perturbation. Here we review the applications of Raman spectroscopy and CARS imaging in stem-cell research, and discuss the potential of these two techniques for evaluating SSCs, skeletal tissues and skeletal regeneration as an exemplar.
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Affiliation(s)
- Catarina Costa Moura
- Department of Chemistry and Institute for Life Sciences, University of Southampton, Highfield Campus, Southampton SO17 1BJ, UK Bone and Joint Research Group, Centre for Human Development, Stem Cells and Regeneration, Institute of Developmental Sciences, University of Southampton, Southampton SO16 6YD, UK
| | - Rahul S Tare
- Bone and Joint Research Group, Centre for Human Development, Stem Cells and Regeneration, Institute of Developmental Sciences, University of Southampton, Southampton SO16 6YD, UK
| | - Richard O C Oreffo
- Bone and Joint Research Group, Centre for Human Development, Stem Cells and Regeneration, Institute of Developmental Sciences, University of Southampton, Southampton SO16 6YD, UK
| | - Sumeet Mahajan
- Department of Chemistry and Institute for Life Sciences, University of Southampton, Highfield Campus, Southampton SO17 1BJ, UK
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18
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Karuna A, Masia F, Borri P, Langbein W. Hyperspectral volumetric coherent anti-Stokes Raman scattering microscopy: quantitative volume determination and NaCl as non-resonant standard. JOURNAL OF RAMAN SPECTROSCOPY : JRS 2016; 47:1167-1173. [PMID: 27708499 PMCID: PMC5032898 DOI: 10.1002/jrs.4876] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/24/2015] [Revised: 12/11/2015] [Accepted: 12/11/2015] [Indexed: 06/06/2023]
Abstract
In this work, we demonstrate quantitative volume determination of chemical components in three dimensions using hyperspectral coherent anti-Stokes Raman scattering microscopy, phase-corrected Kramers-Kronig retrieval of the coherent anti-Stokes Raman scattering susceptibility and factorization into concentration of chemical components. We investigate the influence of the refractive index contrast between water and polymer beads (polystyrene and polymethylmethacrylate), showing that it leads mainly to concentration errors, while the spectral error is less affected. The volume of polystyrene beads of sizes from 200 nm to 3 μm is determined with 10% relative error and 1% absolute error in the region of interest. We furthermore establish the use of sodium chloride as non-resonant reference material free of Raman-active vibrational resonances.
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Affiliation(s)
- Arnica Karuna
- School of Physics and Astronomy Cardiff University, The Parade Cardiff CF24 3AA UK
| | - Francesco Masia
- School of Physics and Astronomy Cardiff University, The Parade Cardiff CF24 3AA UK
| | - Paola Borri
- School of Biosciences Cardiff University Museum Avenue Cardiff CF10 3AX UK
| | - Wolfgang Langbein
- School of Physics and Astronomy Cardiff University, The Parade Cardiff CF24 3AA UK
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19
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Liao CS, Cheng JX. In Situ and In Vivo Molecular Analysis by Coherent Raman Scattering Microscopy. ANNUAL REVIEW OF ANALYTICAL CHEMISTRY (PALO ALTO, CALIF.) 2016; 9:69-93. [PMID: 27306307 PMCID: PMC5367927 DOI: 10.1146/annurev-anchem-071015-041627] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
Coherent Raman scattering (CRS) microscopy is a high-speed vibrational imaging platform with the ability to visualize the chemical content of a living specimen by using molecular vibrational fingerprints. We review technical advances and biological applications of CRS microscopy. The basic theory of CRS and the state-of-the-art instrumentation of a CRS microscope are presented. We further summarize and compare the algorithms that are used to separate the Raman signal from the nonresonant background, to denoise a CRS image, and to decompose a hyperspectral CRS image into concentration maps of principal components. Important applications of single-frequency and hyperspectral CRS microscopy are highlighted. Potential directions of CRS microscopy are discussed.
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Affiliation(s)
- Chien-Sheng Liao
- Weldon School of Biomedical Engineering, Purdue University, West Lafayette, Indiana 47907;
| | - Ji-Xin Cheng
- Weldon School of Biomedical Engineering, Purdue University, West Lafayette, Indiana 47907;
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20
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Bradley J, Pope I, Masia F, Sanusi R, Langbein W, Swann K, Borri P. Quantitative imaging of lipids in live mouse oocytes and early embryos using CARS microscopy. Development 2016; 143:2238-47. [PMID: 27151947 PMCID: PMC4920167 DOI: 10.1242/dev.129908] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2015] [Accepted: 04/27/2016] [Indexed: 02/05/2023]
Abstract
Mammalian oocytes contain lipid droplets that are a store of fatty acids, whose metabolism plays a substantial role in pre-implantation development. Fluorescent staining has previously been used to image lipid droplets in mammalian oocytes and embryos, but this method is not quantitative and often incompatible with live cell imaging and subsequent development. Here we have applied chemically specific, label-free coherent anti-Stokes Raman scattering (CARS) microscopy to mouse oocytes and pre-implantation embryos. We show that CARS imaging can quantify the size, number and spatial distribution of lipid droplets in living mouse oocytes and embryos up to the blastocyst stage. Notably, it can be used in a way that does not compromise oocyte maturation or embryo development. We have also correlated CARS with two-photon fluorescence microscopy simultaneously acquired using fluorescent lipid probes on fixed samples, and found only a partial degree of correlation, depending on the lipid probe, clearly exemplifying the limitation of lipid labelling. In addition, we show that differences in the chemical composition of lipid droplets in living oocytes matured in media supplemented with different saturated and unsaturated fatty acids can be detected using CARS hyperspectral imaging. These results demonstrate that CARS microscopy provides a novel non-invasive method of quantifying lipid content, type and spatial distribution with sub-micron resolution in living mammalian oocytes and embryos.
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Affiliation(s)
- Josephine Bradley
- Cardiff School of Biosciences, The Sir Martin Evans Building, Museum Avenue, Cardiff CF10 3AX, UK
| | - Iestyn Pope
- Cardiff School of Biosciences, The Sir Martin Evans Building, Museum Avenue, Cardiff CF10 3AX, UK
| | - Francesco Masia
- Cardiff School of Physics and Astronomy, The Parade, Cardiff CF24 3AA, UK
| | - Randa Sanusi
- Cardiff University School of Medicine, Sir Geraint Evans Building, Heath Park, Cardiff CF14 4XN, UK
| | - Wolfgang Langbein
- Cardiff School of Physics and Astronomy, The Parade, Cardiff CF24 3AA, UK
| | - Karl Swann
- Cardiff University School of Medicine, Sir Geraint Evans Building, Heath Park, Cardiff CF14 4XN, UK
| | - Paola Borri
- Cardiff School of Biosciences, The Sir Martin Evans Building, Museum Avenue, Cardiff CF10 3AX, UK
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21
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Di Napoli C, Pope I, Masia F, Langbein W, Watson P, Borri P. Quantitative Spatiotemporal Chemical Profiling of Individual Lipid Droplets by Hyperspectral CARS Microscopy in Living Human Adipose-Derived Stem Cells. Anal Chem 2016; 88:3677-85. [DOI: 10.1021/acs.analchem.5b04468] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Claudia Di Napoli
- School
of Biosciences, Cardiff University, Cardiff CF10 3AX, United Kingdom
| | - Iestyn Pope
- School
of Biosciences, Cardiff University, Cardiff CF10 3AX, United Kingdom
| | - Francesco Masia
- School
of Physics and Astronomy, Cardiff University, Cardiff CF10 3AX, United Kingdom
| | - Wolfgang Langbein
- School
of Physics and Astronomy, Cardiff University, Cardiff CF10 3AX, United Kingdom
| | - Pete Watson
- School
of Biosciences, Cardiff University, Cardiff CF10 3AX, United Kingdom
| | - Paola Borri
- School
of Biosciences, Cardiff University, Cardiff CF10 3AX, United Kingdom
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22
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Broadband coherent Raman spectroscopy running at 24,000 spectra per second. Sci Rep 2016; 6:21036. [PMID: 26875786 PMCID: PMC4753469 DOI: 10.1038/srep21036] [Citation(s) in RCA: 59] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2015] [Accepted: 01/15/2016] [Indexed: 01/31/2023] Open
Abstract
We present a Fourier-transform coherent anti-Stokes Raman scattering (FT-CARS) spectroscopy technique that achieves broadband CARS measurements at an ultrahigh scan rate of more than 20,000 spectra/s – more than 20 times higher than that of previous broadband coherent Raman scattering spectroscopy techniques. This is made possible by an integration of a FT-CARS system and a rapid-scanning retro-reflective optical path length scanner. To demonstrate the technique’s strength, we use it to perform broadband CARS spectroscopy of the transient mixing dynamics of toluene and benzene in the fingerprint region (200–1500 cm−1) with spectral resolution of 10 cm−1 at a record high scan rate of 24,000 spectra/s. Our rapid-scanning FT-CARS technique holds great promise for studying chemical dynamics and wide-field label-free biomedical imaging.
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23
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Abstract
Advancements in coherent Raman scattering (CRS) microscopy have enabled label-free visualization and analysis of functional, endogenous biomolecules in living systems. When compared with spontaneous Raman microscopy, a key advantage of CRS microscopy is the dramatic improvement in imaging speed, which gives rise to real-time vibrational imaging of live biological samples. Using molecular vibrational signatures, recently developed hyperspectral CRS microscopy has improved the readout of chemical information available from CRS images. In this article, we review recent achievements in CRS microscopy, focusing on the theory of the CRS signal-to-noise ratio, imaging speed, technical developments, and applications of CRS imaging in bioscience and clinical settings. In addition, we present possible future directions that the use of this technology may take.
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Affiliation(s)
- Chi Zhang
- Weldon School of Biomedical Engineering and Department of Chemistry, Purdue University, West Lafayette, Indiana 47907;
| | - Delong Zhang
- Weldon School of Biomedical Engineering and Department of Chemistry, Purdue University, West Lafayette, Indiana 47907;
| | - Ji-Xin Cheng
- Weldon School of Biomedical Engineering and Department of Chemistry, Purdue University, West Lafayette, Indiana 47907;
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24
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Darville N, Saarinen J, Isomäki A, Khriachtchev L, Cleeren D, Sterkens P, van Heerden M, Annaert P, Peltonen L, Santos HA, Strachan CJ, Van den Mooter G. Multimodal non-linear optical imaging for the investigation of drug nano-/microcrystal–cell interactions. Eur J Pharm Biopharm 2015; 96:338-48. [DOI: 10.1016/j.ejpb.2015.09.003] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2015] [Revised: 07/24/2015] [Accepted: 09/02/2015] [Indexed: 10/23/2022]
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25
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Huang X, Irmak S, Lu YF, Pipinos I, Casale G, Subbiah J. Spontaneous and coherent anti-Stokes Raman spectroscopy of human gastrocnemius muscle biopsies in CH-stretching region for discrimination of peripheral artery disease. BIOMEDICAL OPTICS EXPRESS 2015; 6:2766-2777. [PMID: 26309742 PMCID: PMC4541506 DOI: 10.1364/boe.6.002766] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2015] [Revised: 06/21/2015] [Accepted: 06/24/2015] [Indexed: 06/04/2023]
Abstract
Peripheral Artery Disease (PAD) is a common manifestation of atherosclerosis, characterized by lower leg ischemia and myopathy in association with leg dysfunction. In the present study, Spontaneous and coherent anti-Stokes Raman scattering (CARS) spectroscopic techniques in CH-stretching spectral region were evaluated for discriminating healthy and diseased tissues of human gastrocnemius biopsies of control and PAD patients. Since Raman signatures of the tissues in the fingerprint region are highly complex and CH containing moieties are dense, CH-stretching limited spectral range was used to classify the diseased tissues. A total of 181 Raman spectra from 9 patients and 122 CARS spectra from 12 patients were acquired. Due to the high dimensionality of the data in Raman and CARS measurements, principal component analysis (PCA) was first performed to reduce the dimensionality of the data (6 and 9 principal scores for Raman and CARS, respectively) in the CH-stretching region, followed by a discriminant function analysis (DFA) to classify the samples into different categories based on disease severity. The CH2 and CH3 vibrational signatures were observed in the Raman and CARS spectroscopy. Raman and CARS data in conjunction with PCA-DFA analysis were capable of differentiating healthy and PAD gastrocnemius with an accuracy of 85.6% and 78.7%, respectively.
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Affiliation(s)
- X. Huang
- Department of Electrical and Computer Engineering, University of Nebraska-Lincoln, Lincoln, NE 68588-0511, USA
| | - S. Irmak
- Biological Systems Engineering, University of Nebraska, Lincoln, NE 68583-0726, USA
| | - Y. F. Lu
- Department of Electrical and Computer Engineering, University of Nebraska-Lincoln, Lincoln, NE 68588-0511, USA
| | - I. Pipinos
- Department of Surgery, University of Nebraska Medical Center, Omaha, NE 68198-5182, USA
| | - G. Casale
- Department of Surgery, University of Nebraska Medical Center, Omaha, NE 68198-5182, USA
| | - J. Subbiah
- Biological Systems Engineering, University of Nebraska, Lincoln, NE 68583-0726, USA
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26
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Masia F, Karuna A, Borri P, Langbein W. Hyperspectral image analysis for CARS, SRS, and Raman data. JOURNAL OF RAMAN SPECTROSCOPY : JRS 2015; 46:727-734. [PMID: 27478301 PMCID: PMC4950149 DOI: 10.1002/jrs.4729] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2014] [Revised: 05/01/2015] [Accepted: 05/05/2015] [Indexed: 05/23/2023]
Abstract
In this work, we have significantly enhanced the capabilities of the hyperspectral image analysis (HIA) first developed by Masia et al. 1 The HIA introduced a method to factorize the hyperspectral data into the product of component concentrations and spectra for quantitative analysis of the chemical composition of the sample. The enhancements shown here comprise (1) a spatial weighting to reduce the spatial variation of the spectral error, which improves the retrieval of the chemical components with significant local but small global concentrations; (2) a new selection criterion for the spectra used when applying sparse sampling2 to speed up sequential hyperspectral imaging; and (3) a filter for outliers in the data using singular value decomposition, suited e.g. to suppress motion artifacts. We demonstrate the enhancements on coherent anti-Stokes Raman scattering, stimulated Raman scattering, and spontaneous Raman data. We provide the HIA software as executable for public use. © 2015 The Authors. Journal of Raman Spectroscopy published by John Wiley & Sons, Ltd.
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Affiliation(s)
- Francesco Masia
- School of Physics and Astronomy Cardiff University The Parade Cardiff CF24 3AA UK
| | - Arnica Karuna
- School of Physics and Astronomy Cardiff University The Parade Cardiff CF24 3AA UK
| | - Paola Borri
- School of Physics and Astronomy Cardiff University The Parade Cardiff CF24 3AA UK; School of Biosciences Cardiff University Museum Avenue Cardiff CF10 3AX UK
| | - Wolfgang Langbein
- School of Physics and Astronomy Cardiff University The Parade Cardiff CF24 3AA UK
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27
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Chen X, Xu X, McCormick DT, Wong K, Wong ST. Multimodal nonlinear endo-microscopy probe design for high resolution, label-free intraoperative imaging. BIOMEDICAL OPTICS EXPRESS 2015; 6. [PMID: 26203361 PMCID: PMC4505689 DOI: 10.1364/boe.6.002283] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
We present a portable, multimodal, nonlinear endo-microscopy probe designed for intraoperative oncological imaging. Application of a four-wave mixing noise suppression scheme using dual wavelength wave plates (DWW) and a polarization-maintaining fiber improves tissue signal collection efficiency, allowing for miniaturization. The probe, with a small 14 mm transversal diameter, includes a customized miniaturized two-axis MEMS (micro-electromechanical system) raster scanning mirror and micro-optics with an illumination laser delivered by a polarization-maintaining fiber. The probe can potentially be integrated into the arms of a surgical robot, such as da Vinci robotic surgery system, due to its minimal cross sectional area. It has the ability to incorporate multiple imaging modalities including CARS (coherent anti-Stokes Raman scattering), SHG (second harmonic generation), and TPEF (two-photon excited fluorescence) in order to allow the surgeon to locate tumor cells within the context of normal stromal tissue. The resolution of the endo-microscope is experimentally determined to be 0.78 µm, a high level of accuracy for such a compact probe setup. The expected resolution of the as-built multimodal, nonlinear, endo-microscopy probe is 1 µm based on the calculation tolerance allocation using Monte-Carlo simulation. The reported probe is intended for use in laparoscopic or radical prostatectomy, including detection of tumor margins and avoidance of nerve impairment during surgery.
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Affiliation(s)
- Xu Chen
- Department of Systems Medicine and Bioengineering, Houston Methodist Research Institute, Weill Cornell Medical College, Houston, Texas 77030, USA
| | - Xiaoyun Xu
- Department of Systems Medicine and Bioengineering, Houston Methodist Research Institute, Weill Cornell Medical College, Houston, Texas 77030, USA
| | | | - Kelvin Wong
- Department of Systems Medicine and Bioengineering, Houston Methodist Research Institute, Weill Cornell Medical College, Houston, Texas 77030, USA
- Department of Radiology, Houston Methodist Hospital, Weill Cornell Medical College, Houston, Texas 77030, USA
| | - Stephen T.C. Wong
- Department of Systems Medicine and Bioengineering, Houston Methodist Research Institute, Weill Cornell Medical College, Houston, Texas 77030, USA
- Department of Pathology and Genomic Medicine, Houston Methodist Hospital, Weill Cornell Medical College, Houston, Texas 77030, USA
- Department of Radiology, Houston Methodist Hospital, Weill Cornell Medical College, Houston, Texas 77030, USA
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28
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Comparative biochemistry of Giardia, Hexamita and Spironucleus: Enigmatic diplomonads. Mol Biochem Parasitol 2014; 197:43-9. [DOI: 10.1016/j.molbiopara.2014.10.002] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2014] [Revised: 10/03/2014] [Accepted: 10/03/2014] [Indexed: 12/30/2022]
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