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Li HL, Wang Y, Guo D, Zhu JH, Wang Y, Dai HF, Peng SQ. Reprogramming of DNA methylation and changes of gene expression in grafted Hevea brasiliensis. FRONTIERS IN PLANT SCIENCE 2024; 15:1407700. [PMID: 38978517 PMCID: PMC11228250 DOI: 10.3389/fpls.2024.1407700] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/27/2024] [Accepted: 05/30/2024] [Indexed: 07/10/2024]
Abstract
Rubber tree (Hevea brasiliensis) is reproduced by bud grafting for commercial planting, but significant intraclonal variations exist in bud-grafted clones. DNA methylation changes related to grafting may be partly responsible for intraclonal variations. In the current study, whole-genome DNA methylation profiles of grafted rubber tree plants (GPs) and their donor plants (DPs) were evaluated by whole-genome bisulfite sequencing. Data showed that DNA methylation was downregulated and DNA methylations in CG, CHG, and CHH sequences were reprogrammed in GPs, suggesting that grafting induced the reprogramming of DNA methylation. A total of 5,939 differentially methylated genes (DMGs) were identified by comparing fractional methylation levels between GPs and DPs. Transcriptional analysis revealed that there were 9,798 differentially expressed genes (DEGs) in the DP and GP comparison. A total of 1,698 overlapping genes between DEGs and DMGs were identified. These overlapping genes were markedly enriched in the metabolic pathway and biosynthesis of secondary metabolites by Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis. Global DNA methylation and transcriptional analyses revealed that reprogramming of DNA methylation is correlated with gene expression in grafted rubber trees. The study provides a whole-genome methylome of rubber trees and an insight into the molecular mechanisms underlying the intraclonal variations existing in the commercial planting of grafted rubber trees.
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Affiliation(s)
- Hui-Liang Li
- Key Laboratory of Biology and Genetic Resources of Tropical Crops, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences and Key Laboratory for Biology and Genetic Resources of Hainan Province, Hainan Academy of Tropical Agricultural Resource, Haikou, Hainan, China
- National Key Laboratory for Tropical Crop Breeding and Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya, Hainan, China
- Hainan Key Laboratory for Biosafety Monitoring and Molecular Breeding in Off-Season Reproduction Regions, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China
| | - Ying Wang
- Key Laboratory of Biology and Genetic Resources of Tropical Crops, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences and Key Laboratory for Biology and Genetic Resources of Hainan Province, Hainan Academy of Tropical Agricultural Resource, Haikou, Hainan, China
| | - Dong Guo
- Key Laboratory of Biology and Genetic Resources of Tropical Crops, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences and Key Laboratory for Biology and Genetic Resources of Hainan Province, Hainan Academy of Tropical Agricultural Resource, Haikou, Hainan, China
- National Key Laboratory for Tropical Crop Breeding and Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya, Hainan, China
| | - Jia-Hong Zhu
- Key Laboratory of Biology and Genetic Resources of Tropical Crops, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences and Key Laboratory for Biology and Genetic Resources of Hainan Province, Hainan Academy of Tropical Agricultural Resource, Haikou, Hainan, China
- National Key Laboratory for Tropical Crop Breeding and Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya, Hainan, China
| | - Yu Wang
- Key Laboratory of Biology and Genetic Resources of Tropical Crops, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences and Key Laboratory for Biology and Genetic Resources of Hainan Province, Hainan Academy of Tropical Agricultural Resource, Haikou, Hainan, China
- National Key Laboratory for Tropical Crop Breeding and Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya, Hainan, China
- Hainan Key Laboratory for Biosafety Monitoring and Molecular Breeding in Off-Season Reproduction Regions, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China
| | - Hao-Fu Dai
- Key Laboratory of Biology and Genetic Resources of Tropical Crops, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences and Key Laboratory for Biology and Genetic Resources of Hainan Province, Hainan Academy of Tropical Agricultural Resource, Haikou, Hainan, China
| | - Shi-Qing Peng
- Key Laboratory of Biology and Genetic Resources of Tropical Crops, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences and Key Laboratory for Biology and Genetic Resources of Hainan Province, Hainan Academy of Tropical Agricultural Resource, Haikou, Hainan, China
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Karaca M, Ince AG. Grafting based DNA methylation alteration of snoRNAs in upland cotton ( Gossypium L.). PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS : AN INTERNATIONAL JOURNAL OF FUNCTIONAL PLANT BIOLOGY 2024; 30:893-907. [PMID: 38974361 PMCID: PMC11222342 DOI: 10.1007/s12298-024-01469-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/19/2024] [Revised: 05/28/2024] [Accepted: 06/05/2024] [Indexed: 07/09/2024]
Abstract
The effects of grafting in response to various biotic and abiotic stressors have been studied, however, the methylation status of small nucleolar RNA (snoRNA) genes in heterograft and homograft cotton needs investigation. This study was undertaken to determine grafting effects on DNA methylation of snoRNA genes in Upland cotton. Rootstocks used were Pima 3-79 (Gossypium barbadense acc. Pima 3-79) and Texas Marker-1 (G. hirsutum acc. TM-1), representing two different species with different fiber properties, adaptations, and morphologies. The methylation ratio and differently methylated cytosines (DMCs) of 10935 snoRNA genes in mature seeds of heterograft and homograft cotton samples were studied using the whole genome bisulfite sequencing method. Seedling vigor and seed weight were studied to investigate phenotype alterations that might be associated with altered methylation levels among grafts. Statistically significant DMC differences among gene elements of snoRNA genes and between homograft and heterograft cotton samples were identified in the absence of DNA sequence alterations. DNA methylation alterations of snoRNA genes associated with seedling vigor and 100 seed weight. The majority of snoRNA genes showed higher numbers of mCG + mCHG-DMCs with increased methylation levels in heterograft, while there were higher numbers of mCG + mCHG-DMCs with decreased methylation levels in homograft. Since snoRNAs regulate essential genes for plant growth and development and plant adaptation to different habitats or extreme environments, their altered methylation levels should be related with plant physiology.
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Affiliation(s)
- Mehmet Karaca
- Department of Field Crops, Faculty of Agriculture, Akdeniz University, 07059 Antalya, Turkey
| | - Ayse Gul Ince
- Vocational School of Technical Sciences, Akdeniz University, 07059 Antalya, Turkey
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Xu J, He J, Hu B, Hou N, Guo J, Wang C, Li X, Li Z, Zhai J, Zhang T, Ma C, Ma F, Guan Q. Global hypermethylation of the N6-methyladenosine RNA modification associated with apple heterografting. PLANT PHYSIOLOGY 2023; 193:2513-2537. [PMID: 37648253 PMCID: PMC10663141 DOI: 10.1093/plphys/kiad470] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2023] [Accepted: 07/20/2023] [Indexed: 09/01/2023]
Abstract
Grafting can facilitate better scion performance and is widely used in plants. Numerous studies have studied the involvement of mRNAs, small RNAs, and epigenetic regulations in the grafting process. However, it remains unclear whether the mRNA N6-methyladenosine (m6A) modification participates in the apple (Malus x domestica Borkh.) grafting process. Here, we decoded the landscape of m6A modification profiles in 'Golden delicious' (a cultivar, Gd) and Malus prunifolia 'Fupingqiuzi' (a unique rootstock with resistance to environmental stresses, Mp), as well as their heterografted and self-grafted plants. Interestingly, global hypermethylation of m6A occurred in both heterografted scion and rootstock compared with their self-grafting controls. Gene Ontology (GO) term enrichment analysis showed that grafting-induced differentially m6A-modified genes were mainly involved in RNA processing, epigenetic regulation, stress response, and development. Differentially m6A-modified genes harboring expression alterations were mainly involved in various stress responses and fatty acid metabolism. Furthermore, grafting-induced mobile mRNAs with m6A and gene expression alterations mainly participated in ABA synthesis and transport (e.g. carotenoid cleavage dioxygenase 1 [CCD1] and ATP-binding cassette G22 [ABCG22]) and abiotic and biotic stress responses, which might contribute to the better performance of heterografted plants. Additionally, the DNA methylome analysis also demonstrated the DNA methylation alterations during grafting. Downregulated expression of m6A methyltransferase gene MdMTA (ortholog of METTL3) in apples induced the global m6A hypomethylation and distinctly activated the expression level of DNA demethylase gene MdROS1 (REPRESSOR OF SILENCING 1) showing the possible association between m6A and 5mC methylation in apples. Our results reveal the m6A modification profiles in the apple grafting process and enhance our understanding of the m6A regulatory mechanism in plant biological processes.
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Affiliation(s)
- Jidi Xu
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Yangling 712100, Shaanxi, China
| | - Jieqiang He
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Yangling 712100, Shaanxi, China
| | - Bichun Hu
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Yangling 712100, Shaanxi, China
| | - Nan Hou
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Yangling 712100, Shaanxi, China
| | - Junxing Guo
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Yangling 712100, Shaanxi, China
| | - Caixia Wang
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Yangling 712100, Shaanxi, China
| | - Xuewei Li
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Yangling 712100, Shaanxi, China
| | - Zhongxing Li
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Yangling 712100, Shaanxi, China
| | - Jingjing Zhai
- State Key Laboratory of Crop Stress Biology for Arid Areas, Center of Bioinformatics, College of Life Sciences, Northwest A&F University, Yangling 712100, Shaanxi, China
| | - Ting Zhang
- State Key Laboratory of Crop Stress Biology for Arid Areas, Center of Bioinformatics, College of Life Sciences, Northwest A&F University, Yangling 712100, Shaanxi, China
| | - Chuang Ma
- State Key Laboratory of Crop Stress Biology for Arid Areas, Center of Bioinformatics, College of Life Sciences, Northwest A&F University, Yangling 712100, Shaanxi, China
| | - Fengwang Ma
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Yangling 712100, Shaanxi, China
| | - Qingmei Guan
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Yangling 712100, Shaanxi, China
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Agius DR, Kapazoglou A, Avramidou E, Baranek M, Carneros E, Caro E, Castiglione S, Cicatelli A, Radanovic A, Ebejer JP, Gackowski D, Guarino F, Gulyás A, Hidvégi N, Hoenicka H, Inácio V, Johannes F, Karalija E, Lieberman-Lazarovich M, Martinelli F, Maury S, Mladenov V, Morais-Cecílio L, Pecinka A, Tani E, Testillano PS, Todorov D, Valledor L, Vassileva V. Exploring the crop epigenome: a comparison of DNA methylation profiling techniques. FRONTIERS IN PLANT SCIENCE 2023; 14:1181039. [PMID: 37389288 PMCID: PMC10306282 DOI: 10.3389/fpls.2023.1181039] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/06/2023] [Accepted: 04/27/2023] [Indexed: 07/01/2023]
Abstract
Epigenetic modifications play a vital role in the preservation of genome integrity and in the regulation of gene expression. DNA methylation, one of the key mechanisms of epigenetic control, impacts growth, development, stress response and adaptability of all organisms, including plants. The detection of DNA methylation marks is crucial for understanding the mechanisms underlying these processes and for developing strategies to improve productivity and stress resistance of crop plants. There are different methods for detecting plant DNA methylation, such as bisulfite sequencing, methylation-sensitive amplified polymorphism, genome-wide DNA methylation analysis, methylated DNA immunoprecipitation sequencing, reduced representation bisulfite sequencing, MS and immuno-based techniques. These profiling approaches vary in many aspects, including DNA input, resolution, genomic region coverage, and bioinformatics analysis. Selecting an appropriate methylation screening approach requires an understanding of all these techniques. This review provides an overview of DNA methylation profiling methods in crop plants, along with comparisons of the efficacy of these techniques between model and crop plants. The strengths and limitations of each methodological approach are outlined, and the importance of considering both technical and biological factors are highlighted. Additionally, methods for modulating DNA methylation in model and crop species are presented. Overall, this review will assist scientists in making informed decisions when selecting an appropriate DNA methylation profiling method.
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Affiliation(s)
- Dolores Rita Agius
- Centre of Molecular Medicine and Biobanking, University of Malta, Msida, Malta
- Biology Department, Ġ.F.Abela Junior College, Msida, Malta
| | - Aliki Kapazoglou
- Department of Vitis, Institute of Olive Tree, Subtropical Crops and Viticulture (IOSV), Hellenic Agricultural Organization-DIMITRA (ELGO-DIMITRA), Athens, Greece
| | - Evangelia Avramidou
- Laboratory of Forest Genetics and Biotechnology, Institute of Mediterranean Forest Ecosystems, Hellenic Agricultural Organization-DIMITRA (ELGO-DIMITRA), Athens, Greece
| | - Miroslav Baranek
- Mendeleum-Insitute of Genetics, Faculty of Horticulture, Mendel University in Brno, Lednice, Czechia
| | - Elena Carneros
- Center for Biological Research (CIB) of the Spanish National Research Council (CSIC), Madrid, Spain
| | - Elena Caro
- Centro de Biotecnología y Genómica de Plantas, Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Universidad Politécnica de Madrid (UPM), Madrid, Spain
| | - Stefano Castiglione
- Department of Chemistry and Biology ‘A. Zambelli’, University of Salerno, Fisciano, Italy
| | - Angela Cicatelli
- Department of Chemistry and Biology ‘A. Zambelli’, University of Salerno, Fisciano, Italy
| | - Aleksandra Radanovic
- Institute of Field and Vegetable Crops, National Institute of Republic of Serbia, Novi Sad, Serbia
| | - Jean-Paul Ebejer
- Centre of Molecular Medicine and Biobanking, University of Malta, Msida, Malta
| | - Daniel Gackowski
- Department of Clinical Biochemistry, Faculty of Pharmacy, Collegium Medicum in Bydgoszcz, Nicolaus Copernicus University in Toruń, Bydgoszcz, Poland
| | - Francesco Guarino
- Department of Chemistry and Biology ‘A. Zambelli’, University of Salerno, Fisciano, Italy
| | - Andrea Gulyás
- Centre for Agricultural Genomics and Biotechnology, Faculty of Agricultural and Food Sciences and Environmental Management, University of Debrecen, Nyíregyháza, Hungary
| | - Norbert Hidvégi
- Centre for Agricultural Genomics and Biotechnology, Faculty of Agricultural and Food Sciences and Environmental Management, University of Debrecen, Nyíregyháza, Hungary
| | - Hans Hoenicka
- Genomic Research Department, Thünen Institute of Forest Genetics, Grosshansdorf, Germany
| | - Vera Inácio
- BioISI – BioSystems & Integrative Sciences Institute, Faculdade de Ciências, Universidade de Lisboa, Lisbon, Portugal
| | - Frank Johannes
- Plant Epigenomics, Technical University of Munich (TUM), Freising, Germany
| | - Erna Karalija
- Faculty of Science, University of Sarajevo, Sarajevo, Bosnia and Herzegovina
| | - Michal Lieberman-Lazarovich
- Department of Vegetables and Field Crops, Agricultural Research Organization, Volcani Center, Institute of Plant Sciences, Rishon LeZion, Israel
| | | | - Stéphane Maury
- Laboratoire de Biologie des Ligneux et des Grandes Cultures EA1207 USC1328, INRAE, Université d’Orléans, Orléans, France
| | - Velimir Mladenov
- Faculty of Agriculture, University of Novi Sad, Novi Sad, Serbia
| | - Leonor Morais-Cecílio
- Linking Landscape, Environment, Agriculture and Food (LEAF), Institute of Agronomy, University of Lisbon, Lisbon, Portugal
| | - Ales Pecinka
- Centre of Plant Structural and Functional Genomics, Institute of Experimental Botany of the Czech Academy of Sciences, Olomouc, Czechia
| | - Eleni Tani
- Laboratory of Plant Breeding and Biometry, Department of Crop Science, Agricultural University of Athens, Athens, Greece
| | - Pilar S. Testillano
- Center for Biological Research (CIB) of the Spanish National Research Council (CSIC), Madrid, Spain
| | - Dimitar Todorov
- Department of Molecular Biology and Genetics, Institute of Plant Physiology and Genetics, Bulgarian Academy of Sciences, Sofia, Bulgaria
| | - Luis Valledor
- Plant Physiology, Department of Organisms and Systems Biology and University Institute of Biotechnology of Asturias, University of Oviedo, Oviedo, Spain
| | - Valya Vassileva
- Department of Molecular Biology and Genetics, Institute of Plant Physiology and Genetics, Bulgarian Academy of Sciences, Sofia, Bulgaria
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Jeynes-Cupper K, Catoni M. Long distance signalling and epigenetic changes in crop grafting. FRONTIERS IN PLANT SCIENCE 2023; 14:1121704. [PMID: 37021313 PMCID: PMC10067726 DOI: 10.3389/fpls.2023.1121704] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/12/2022] [Accepted: 03/10/2023] [Indexed: 06/19/2023]
Abstract
Humans have used grafting for more than 4000 years to improve plant production, through physically joining two different plants, which can continue to grow as a single organism. Today, grafting is becoming increasingly more popular as a technique to increase the production of herbaceous horticultural crops, where rootstocks can introduce traits such as resistance to several pathogens and/or improving the plant vigour. Research in model plants have documented how long-distance signalling mechanisms across the graft junction, together with epigenetic regulation, can produce molecular and phenotypic changes in grafted plants. Yet, most of the studied examples rely on proof-of-concept experiments or on limited specific cases. This review explores the link between research findings in model plants and crop species. We analyse studies investigating the movement of signalling molecules across the graft junction and their implications on epigenetic regulation. The improvement of genomics analyses and the increased availability of genetic resources has allowed to collect more information on potential benefits of grafting in horticultural crop models. Ultimately, further research into this topic will enhance our ability to use the grafting technique to exploit genetic and epigenetic variation in crops, as an alternative to traditional breeding.
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Affiliation(s)
| | - Marco Catoni
- School of Biosciences, University of Birmingham, Birmingham, United Kingdom
- Institute for Sustainable Plant Protection, National Research Council of Italy, Torino, Italy
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Chambaud C, Cookson SJ, Ollat N, Bernard A, Brocard L. Targeting Ultrastructural Events at the Graft Interface of Arabidopsis thaliana by A Correlative Light Electron Microscopy Approach. Bio Protoc 2023; 13:e4590. [PMID: 36789163 PMCID: PMC9901456 DOI: 10.21769/bioprotoc.4590] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2022] [Revised: 10/24/2022] [Accepted: 12/20/2022] [Indexed: 01/20/2023] Open
Abstract
Combining two different plants together through grafting is one of the oldest horticultural techniques. In order to survive, both partners must communicate via the formation of de novo connections between the scion and the rootstock. Despite the importance of grafting, the ultrastructural processes occurring at the graft interface remain elusive due to the difficulty of locating the exact interface at the ultrastructural level. To date, only studies with interfamily grafts showing enough ultrastructural differences were able to reliably localize the grafting interface at the ultrastructural level under electron microscopy. Thanks to the implementation of correlative light electron microscopy (CLEM) approaches where the grafted partners were tagged with fluorescent proteins of different colors, the graft interface was successfully and reliably targeted. Here, we describe a protocol for CLEM for the model plant Arabidopsis thaliana , which unambiguously targets the graft interface at the ultrastructural level. Moreover, this protocol is compatible with immunolocalization and electron tomography acquisition to achieve a three-dimensional view of the ultrastructural events of interest in plant tissues. Graphical abstract.
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Affiliation(s)
- Clément Chambaud
- EGFV, Bordeaux Sciences Agro, INRA, Université de Bordeaux, ISVV, 210 Chemin de Leysotte,Villenave d’Ornon, France
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Laboratoire de Biogenèse Membranaire, UMR 5200, CNRS, Université de Bordeaux, F-33140 Villenave d’Ornon, France; Plateform, Villenave d’Ornon, France
| | - Sarah J. Cookson
- EGFV, Bordeaux Sciences Agro, INRA, Université de Bordeaux, ISVV, 210 Chemin de Leysotte,Villenave d’Ornon, France
| | - Nathalie Ollat
- EGFV, Bordeaux Sciences Agro, INRA, Université de Bordeaux, ISVV, 210 Chemin de Leysotte,Villenave d’Ornon, France
| | - Amélie Bernard
- Laboratoire de Biogenèse Membranaire, UMR 5200, CNRS, Université de Bordeaux, F-33140 Villenave d’Ornon, France; Plateform, Villenave d’Ornon, France
| | - Lysiane Brocard
- Université de Bordeaux, CNRS, INSERM, UAR 3420, INRAE, Bordeaux Imaging Center, Plant Imaging
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*For correspondence:
or
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Tejada-Alvarado JJ, Meléndez-Mori JB, Vilca-Valqui NC, Neri JC, Ayala-Tocto RY, Huaman-Huaman E, Gill ERA, Oliva M, Goñas M. Impact of wild solanaceae rootstocks on morphological and physiological response, yield, and fruit quality of tomato (S olanum lycopersicum L.) grown under deficit irrigation conditions. Heliyon 2022; 9:e12755. [PMID: 36685469 PMCID: PMC9849928 DOI: 10.1016/j.heliyon.2022.e12755] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2022] [Revised: 12/22/2022] [Accepted: 12/28/2022] [Indexed: 01/01/2023] Open
Abstract
It has been established that climate change has a direct impact on water availability, an essential resource for agricultural development. As a result, controlling, mitigating, and adapting to water deficit requires the advancement of research on promising wild flora species. As recent studies have shown, wild relatives of certain cultivars are tolerant to adverse factors, enabling the development of sustainable and resilient agriculture. The present study evaluated the morpho-physiology and productivity of tomato scions grafted on wild Solanaceae (Datura stramonium, Solanum sisymbriifolium, Solanum quitoense, and Cyphomandra betacea) grown under water deficit conditions (100% ETc - high level, 75% ETc - moderate level, 50% ETc - medium level, and 25% ETc - low level). The results showed that tomato plants grafted on Datura stramonium rootstocks performed better morpho-physiologically under deficit irrigation. The improved osmoregulation caused by a higher relative water content (98.49%) allowed the scion to be more tolerant to water stress. In addition, these scions showed high water potential during their phenological stages (vegetative -0.47 MPa, flowering -0.59 MPa, and production -0.64 MPa), as well as improved photosynthetic efficiency. The overall tolerance of the scion resulted in better yield (8.14 kg/plant) with higher number of commercially valuable fruits. The D. stramonium rootstock allowed better management and use of irrigation water, increasing productivity (54.95 kg/m3); that is, it is presented as a species with potential for establishing tomato production areas in scenarios of water scarcity or cultivation under deficit irrigation.
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Affiliation(s)
- José Jesús Tejada-Alvarado
- Instituto de Investigación para el Desarrollo Sustentable de Ceja de Selva (INDES-CES), Universidad Nacional Toribio Rodríguez de Mendoza (UNTRM), Chachapoyas 01001, Peru
| | - Jegnes Benjamín Meléndez-Mori
- Instituto de Investigación para el Desarrollo Sustentable de Ceja de Selva (INDES-CES), Universidad Nacional Toribio Rodríguez de Mendoza (UNTRM), Chachapoyas 01001, Peru,Corresponding author.
| | - Nuri Carito Vilca-Valqui
- Instituto de Investigación para el Desarrollo Sustentable de Ceja de Selva (INDES-CES), Universidad Nacional Toribio Rodríguez de Mendoza (UNTRM), Chachapoyas 01001, Peru
| | - Juan C. Neri
- Instituto de Investigación para el Desarrollo Sustentable de Ceja de Selva (INDES-CES), Universidad Nacional Toribio Rodríguez de Mendoza (UNTRM), Chachapoyas 01001, Peru
| | - Rosmery Y. Ayala-Tocto
- Instituto de Investigación para el Desarrollo Sustentable de Ceja de Selva (INDES-CES), Universidad Nacional Toribio Rodríguez de Mendoza (UNTRM), Chachapoyas 01001, Peru
| | - Eyner Huaman-Huaman
- Instituto de Investigación para el Desarrollo Sustentable de Ceja de Selva (INDES-CES), Universidad Nacional Toribio Rodríguez de Mendoza (UNTRM), Chachapoyas 01001, Peru
| | - Elizabeth Renee Ambler Gill
- Instituto de Investigación para el Desarrollo Sustentable de Ceja de Selva (INDES-CES), Universidad Nacional Toribio Rodríguez de Mendoza (UNTRM), Chachapoyas 01001, Peru,College of Life Sciences and Agriculture COLSA, University of New Hampshire, Durham, NH, United States
| | - Manuel Oliva
- Instituto de Investigación para el Desarrollo Sustentable de Ceja de Selva (INDES-CES), Universidad Nacional Toribio Rodríguez de Mendoza (UNTRM), Chachapoyas 01001, Peru
| | - Malluri Goñas
- Instituto de Investigación para el Desarrollo Sustentable de Ceja de Selva (INDES-CES), Universidad Nacional Toribio Rodríguez de Mendoza (UNTRM), Chachapoyas 01001, Peru
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Scion-to-Rootstock Mobile Transcription Factor CmHY5 Positively Modulates the Nitrate Uptake Capacity of Melon Scion Grafted on Squash Rootstock. Int J Mol Sci 2022; 24:ijms24010162. [PMID: 36613606 PMCID: PMC9820822 DOI: 10.3390/ijms24010162] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2022] [Revised: 12/18/2022] [Accepted: 12/18/2022] [Indexed: 12/24/2022] Open
Abstract
It is generally recognized that the root uptake capacity of grafted plants strongly depends on the rootstocks' well-developed root system. However, we found that grafted plants showed different nitrate uptake capacities when different varieties of oriental melon scion were grafted onto the same squash rootstock, suggesting that the scion regulated the nitrate uptake capacity of the rootstock root. In this study, we estimated the nitrate uptake capacity of grafted plants with the different oriental melon varieties' seedlings grafted onto the same squash rootstocks. The results indicated a significant difference in the nitrate uptake rate and activity of two heterologous grafting plants. We also showed a significant difference in CmoNRT2.1 expression in the roots of two grafting combinations and verified the positive regulation of nitrate uptake by CmoNRT2.1 expression. In addition, the two varieties of oriental melon scion had highly significant differences in CmHY5 expression, which was transported to the rootstock and positively induced CmoHY5-1 and CmoHY5-2 expression in the rootstock roots. Meanwhile, CmHY5 could positively regulate CmoNRT2.1 expression in the rootstock roots. Furthermore, CmoHY5-1 and CmoHY5-2 also positively regulated CmoNRT2.1 expression, respectively, and CmoHY5-1 dominated the positive regulation of CmoNRT2.1, while CmHY5 could interact with CmoHY5-1 and CmoHY5-2, respectively, to jointly regulate CmoNRT2.1 expression. The oriental melon scion regulated the nitrate uptake capacity of the melon/squash grafting plant roots, and the higher expression of CmHY5 in the oriental melon scion leaves, the more substantial the nitrate uptake capacity of squash rootstock roots.
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Darré M, Valerga L, Zaro MJ, Lemoine ML, Concellón A, Vicente AR. Eggplant grafting on a cold-tolerant rootstock reduces fruit chilling susceptibility and improves antioxidant stability during storage. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2022; 102:3350-3358. [PMID: 34820839 DOI: 10.1002/jsfa.11682] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2021] [Revised: 11/15/2021] [Accepted: 11/24/2021] [Indexed: 06/13/2023]
Abstract
BACKGROUND Vegetable grafting has been increasingly evaluated to improve preharvest tolerance to biotic and abiotic stresses. However, very few studies have identified rootstock-scion combinations able to improve fruit shelf life and reduce the susceptibility to postharvest disorders. Herein, a purple eggplant scion (cv. Monarca) was grafted onto a cold-tolerant hybrid Solanum rootstock ('Java') and the changes in growth, quality, postharvest chilling tolerance, and antioxidant stability were evaluated. RESULTS Eggplant grafting enhanced plant vigor and fruit growth rate, decreasing the time from set to harvest by 10-15%. Grafted eggplants had a thinner shape and lighter pulp color than the control. The rootstock-scion combination tested showed lower respiration (~60%), dry matter (~15-20%), and phenolic compounds contents (~15-20%) than eggplants from non-grafted plants. Grafting markedly improved fruit performance during postharvest storage. Remarkably, grafted eggplants showed much higher tolerance to chilling injury than the control did, evidenced by a reduction of surface scalds along with decreased softening and pulp browning. The trend in antioxidants found at harvest time was reversed after cold storage due to enhanced stability (20% and 100% for pulp and peel respectively) in fruit from grafted plants. CONCLUSION Purple eggplant (cv. Monarca) grafting onto 'Java' hybrid rootstock modulated fruit growth, quality at harvest, and increased fruit chilling injury tolerance during storage. Grafting may be a bona fide strategy to induce phenotypic traits able to improve vegetable postharvest performance. © 2021 Society of Chemical Industry.
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Affiliation(s)
- Magalí Darré
- CIDCA (CCT CONICET, La Plata, Facultad de Ciencias Exactas UNLP), Buenos Aires, Argentina
| | - Lucía Valerga
- CIDCA (CCT CONICET, La Plata, Facultad de Ciencias Exactas UNLP), Buenos Aires, Argentina
| | - María José Zaro
- CIDCA (CCT CONICET, La Plata, Facultad de Ciencias Exactas UNLP), Buenos Aires, Argentina
| | - María Laura Lemoine
- LIPA, Laboratorio de Investigación en Productos Agroindustriales, Facultad de Ciencias Agrarias y Forestales UNLP, Buenos Aires, Argentina
| | - Analia Concellón
- CIDCA (CCT CONICET, La Plata, Facultad de Ciencias Exactas UNLP), Buenos Aires, Argentina
| | - Ariel Roberto Vicente
- LIPA, Laboratorio de Investigación en Productos Agroindustriales, Facultad de Ciencias Agrarias y Forestales UNLP, Buenos Aires, Argentina
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10
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Li W, Chen S, Liu Y, Wang L, Jiang J, Zhao S, Fang W, Chen F, Guan Z. Long-distance transport RNAs between rootstocks and scions and graft hybridization. PLANTA 2022; 255:96. [PMID: 35348893 DOI: 10.1007/s00425-022-03863-w] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/15/2021] [Accepted: 02/17/2022] [Indexed: 06/14/2023]
Abstract
The present review addresses the advances of the identification methods, functions, and transportation mechanism of long-distance transport RNAs between rootstock and scion. In addition, we highlight the cognitive processes and potential mechanisms of graft hybridization. Phloem, the main transport channel of higher plants, plays an important role in the growth and development of plants. Numerous studies have identified a large number of RNAs, including mRNAs, miRNAs, siRNAs, and lncRNAs, in the plant phloem. They can not only be transported to long distances across the grafting junction in the phloem, but also act as signal molecules to regulate the growth, development, and stress resistance of remote cells or tissues, resulting in changes in the traits of rootstocks and scions. Many mobile RNAs have been discovered, but their detection methods, functions, and long-distance transport mechanisms remain to be elucidated. In addition, grafting hybridization, a phenomenon that has been questioned before, and which has an important role in selecting for superior traits, is gradually being recognized with the emergence of new evidence and the prevalence of horizontal gene transfer between parasitic plants. In this review, we outline the species, functions, identification methods, and potential mechanisms of long-distance transport RNAs between rootstocks and scions after grafting. In addition, we summarize the process of recognition and the potential mechanisms of graft hybridization. This study aimed to emphasize the role of grafting in the study of long-distance signals and selection for superior traits and to provide ideas and clues for further research on long-distance transport RNAs and graft hybridization.
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Affiliation(s)
- Wenjie Li
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory of Landscaping, Ministry of Agriculture and Rural Affairs, College of Horticulture, Nanjing Agricultural University, Nanjing, 210095, China
| | - Sumei Chen
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory of Landscaping, Ministry of Agriculture and Rural Affairs, College of Horticulture, Nanjing Agricultural University, Nanjing, 210095, China
| | - Ye Liu
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory of Landscaping, Ministry of Agriculture and Rural Affairs, College of Horticulture, Nanjing Agricultural University, Nanjing, 210095, China
| | - Likai Wang
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory of Landscaping, Ministry of Agriculture and Rural Affairs, College of Horticulture, Nanjing Agricultural University, Nanjing, 210095, China
| | - Jiafu Jiang
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory of Landscaping, Ministry of Agriculture and Rural Affairs, College of Horticulture, Nanjing Agricultural University, Nanjing, 210095, China
| | - Shuang Zhao
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory of Landscaping, Ministry of Agriculture and Rural Affairs, College of Horticulture, Nanjing Agricultural University, Nanjing, 210095, China
| | - Weimin Fang
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory of Landscaping, Ministry of Agriculture and Rural Affairs, College of Horticulture, Nanjing Agricultural University, Nanjing, 210095, China
| | - Fadi Chen
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory of Landscaping, Ministry of Agriculture and Rural Affairs, College of Horticulture, Nanjing Agricultural University, Nanjing, 210095, China
| | - Zhiyong Guan
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory of Landscaping, Ministry of Agriculture and Rural Affairs, College of Horticulture, Nanjing Agricultural University, Nanjing, 210095, China.
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11
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Dong D, Shi YN, Mou ZM, Chen SY, Zhao DK. Grafting: a potential method to reveal the differential accumulation mechanism of secondary metabolites. HORTICULTURE RESEARCH 2022; 9:uhac050. [PMID: 35591927 PMCID: PMC9113227 DOI: 10.1093/hr/uhac050] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/04/2021] [Accepted: 02/14/2022] [Indexed: 06/15/2023]
Abstract
Plant secondary metabolites make a great contribution to the agricultural and pharmaceutical industries. Their accumulation is determined by the integrated transport of target compounds and their biosynthesis-related RNA, protein, or DNA. However, it is hard to track the movement of these biomolecules in vivo. Grafting may be an ideal method to solve this problem. The differences in genetic and metabolic backgrounds between rootstock and scion, coupled with multiple omics approaches and other molecular tools, make it feasible to determine the movement of target compounds, RNAs, proteins, and DNAs. In this review, we will introduce methods of using the grafting technique, together with molecular biological tools, to reveal the differential accumulation mechanism of plant secondary metabolites at different levels. Details of the case of the transport of one diterpene alkaloid, fuziline, will be further illustrated to clarify how the specific accumulation model is shaped with the help of grafting and multiple molecular biological tools.
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Affiliation(s)
- Ding Dong
- Biocontrol Engineering Research Center of Plant Disease and Pest, Yunnan University, Kunming, 650504, China
- Biocontrol Engineering Research Center of Crop Disease and Pest, Yunnan University, Kunming, 650504, China
- School of Life Science, Yunnan University, Kunming, 650204, China
| | - Ya-Na Shi
- Institute of Medicinal Plants, Yunnan Academy of Agricultural Sciences, Kunming, 650000, China
| | - Zong-Min Mou
- Biocontrol Engineering Research Center of Plant Disease and Pest, Yunnan University, Kunming, 650504, China
- Biocontrol Engineering Research Center of Crop Disease and Pest, Yunnan University, Kunming, 650504, China
- School of Ecology and Environmental Science, Yunnan University, Kunming, 650504, China
| | - Sui-Yun Chen
- Biocontrol Engineering Research Center of Plant Disease and Pest, Yunnan University, Kunming, 650504, China
- Biocontrol Engineering Research Center of Crop Disease and Pest, Yunnan University, Kunming, 650504, China
- School of Ecology and Environmental Science, Yunnan University, Kunming, 650504, China
| | - Da-Ke Zhao
- Biocontrol Engineering Research Center of Plant Disease and Pest, Yunnan University, Kunming, 650504, China
- Biocontrol Engineering Research Center of Crop Disease and Pest, Yunnan University, Kunming, 650504, China
- School of Ecology and Environmental Science, Yunnan University, Kunming, 650504, China
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12
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Harnessing epigenetic variability for crop improvement: current status and future prospects. Genes Genomics 2021; 44:259-266. [PMID: 34807374 DOI: 10.1007/s13258-021-01189-7] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2021] [Accepted: 11/07/2021] [Indexed: 10/19/2022]
Abstract
BACKGROUND The epigenetic mechanisms play critical roles in a vast diversity of biological processes of plants, including development and response to environmental challenges. Particularly, DNA methylation is a stable epigenetic signature that supplements the genetics-based view of complex life phenomena. In crop breeding, the decrease in genetic diversity due to artificial selection of conventional breeding methods has been a long-standing concern. Therefore, the epigenetic diversity has been proposed as a new resource for future crop breeding, which will be hereinafter referred to as epibreeding. DISCUSSION The induction of methylome changes has been performed in plants by several methods including chemical drugs treatment and tissue culture. Target-specific epigenetic engineering has been also attempted by exogenous RNAi mediated by virus-induced gene silencing and grafting. Importantly, the new and innovative techniques including the CRISPR-Cas9 system have recently been adopted in epigenetic engineering of plant genomes, facilitating the efforts for epibreeding. CONCLUSION In this review, we introduce several examples of natural and induced epigenetic changes impacting on agronomic traits and discuss the methods for generating epigenomic diversity and site-specific epigenetic engineering.
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13
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Cerruti E, Gisbert C, Drost HG, Valentino D, Portis E, Barchi L, Prohens J, Lanteri S, Comino C, Catoni M. Grafting vigour is associated with DNA de-methylation in eggplant. HORTICULTURE RESEARCH 2021; 8:241. [PMID: 34719687 PMCID: PMC8558322 DOI: 10.1038/s41438-021-00660-6] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2021] [Revised: 07/20/2021] [Accepted: 07/30/2021] [Indexed: 05/08/2023]
Abstract
In horticulture, grafting is a popular technique used to combine positive traits from two different plants. This is achieved by joining the plant top part (scion) onto a rootstock which contains the stem and roots. Rootstocks can provide resistance to stress and increase plant production, but despite their wide use, the biological mechanisms driving rootstock-induced alterations of the scion phenotype remain largely unknown. Given that epigenetics plays a relevant role during distance signalling in plants, we studied the genome-wide DNA methylation changes induced in eggplant (Solanum melongena) scion using two interspecific rootstocks to increase vigour. We found that vigour was associated with a change in scion gene expression and a genome-wide hypomethylation in the CHH context. Interestingly, this hypomethylation correlated with the downregulation of younger and potentially more active long terminal repeat retrotransposable elements (LTR-TEs), suggesting that graft-induced epigenetic modifications are associated with both physiological and molecular phenotypes in grafted plants. Our results indicate that the enhanced vigour induced by heterografting in eggplant is associated with epigenetic modifications, as also observed in some heterotic hybrids.
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Affiliation(s)
- Elisa Cerruti
- Department of Agricultural, Forest and Food Sciences, Plant Genetics and Breeding, University of Torino, Grugliasco, Italy
- The Sainsbury Laboratory, University of Cambridge, Cambridge, UK
| | - Carmina Gisbert
- Institute for Conservation & Improvement of Valencian Agrodiversity (COMAV), Universitat Politècnica de València, Valencia, Spain
| | - Hajk-Georg Drost
- The Sainsbury Laboratory, University of Cambridge, Cambridge, UK
- Computational Biology Group, Department of Molecular Biology, Max Planck Institute for Developmental Biology, Tübingen, Germany
| | - Danila Valentino
- Department of Agricultural, Forest and Food Sciences, Plant Genetics and Breeding, University of Torino, Grugliasco, Italy
| | - Ezio Portis
- Department of Agricultural, Forest and Food Sciences, Plant Genetics and Breeding, University of Torino, Grugliasco, Italy
| | - Lorenzo Barchi
- Department of Agricultural, Forest and Food Sciences, Plant Genetics and Breeding, University of Torino, Grugliasco, Italy
| | - Jaime Prohens
- Institute for Conservation & Improvement of Valencian Agrodiversity (COMAV), Universitat Politècnica de València, Valencia, Spain
| | - Sergio Lanteri
- Department of Agricultural, Forest and Food Sciences, Plant Genetics and Breeding, University of Torino, Grugliasco, Italy
| | - Cinzia Comino
- Department of Agricultural, Forest and Food Sciences, Plant Genetics and Breeding, University of Torino, Grugliasco, Italy.
| | - Marco Catoni
- The Sainsbury Laboratory, University of Cambridge, Cambridge, UK.
- School of Biosciences, University of Birmingham, Birmingham, United Kingdom.
- Institute for Sustainable Plant Protection, National Research Council of Italy, Torino, Italy.
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14
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Dalakouras A, Vlachostergios D. Epigenetic approaches to crop breeding: current status and perspectives. JOURNAL OF EXPERIMENTAL BOTANY 2021; 72:5356-5371. [PMID: 34017985 DOI: 10.1093/jxb/erab227] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/18/2021] [Accepted: 05/18/2021] [Indexed: 05/10/2023]
Abstract
In order to tackle the cumulative adverse effects of global climate change, reduced farmland, and heightened needs of an ever-increasing world population, modern agriculture is in urgent search of solutions that can ensure world food security and sustainable development. Classical crop breeding is still a powerful method to obtain crops with valued agronomical traits, but its potential is gradually being compromised by the menacing decline of genetic variation. Resorting to the epigenome as a source of variation could serve as a promising alternative. Here, we discuss current status of epigenetics-mediated crop breeding (epibreeding), highlight its advances and limitations, outline currently available methodologies, and propose novel RNA-based strategies to modify the epigenome in a gene-specific and transgene-free manner.
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Affiliation(s)
- Athanasios Dalakouras
- Institute of Industrial and Forage Crops, HAO-DEMETER, 41335 Larissa, Greece
- Institute of Plant Breeding and Genetic Resources, HAO-DEMETER, 57001 Thessaloniki, Greece
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15
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Mladenov V, Fotopoulos V, Kaiserli E, Karalija E, Maury S, Baranek M, Segal N, Testillano PS, Vassileva V, Pinto G, Nagel M, Hoenicka H, Miladinović D, Gallusci P, Vergata C, Kapazoglou A, Abraham E, Tani E, Gerakari M, Sarri E, Avramidou E, Gašparović M, Martinelli F. Deciphering the Epigenetic Alphabet Involved in Transgenerational Stress Memory in Crops. Int J Mol Sci 2021; 22:7118. [PMID: 34281171 PMCID: PMC8268041 DOI: 10.3390/ijms22137118] [Citation(s) in RCA: 27] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2021] [Revised: 06/16/2021] [Accepted: 06/27/2021] [Indexed: 12/11/2022] Open
Abstract
Although epigenetic modifications have been intensely investigated over the last decade due to their role in crop adaptation to rapid climate change, it is unclear which epigenetic changes are heritable and therefore transmitted to their progeny. The identification of epigenetic marks that are transmitted to the next generations is of primary importance for their use in breeding and for the development of new cultivars with a broad-spectrum of tolerance/resistance to abiotic and biotic stresses. In this review, we discuss general aspects of plant responses to environmental stresses and provide an overview of recent findings on the role of transgenerational epigenetic modifications in crops. In addition, we take the opportunity to describe the aims of EPI-CATCH, an international COST action consortium composed by researchers from 28 countries. The aim of this COST action launched in 2020 is: (1) to define standardized pipelines and methods used in the study of epigenetic mechanisms in plants, (2) update, share, and exchange findings in epigenetic responses to environmental stresses in plants, (3) develop new concepts and frontiers in plant epigenetics and epigenomics, (4) enhance dissemination, communication, and transfer of knowledge in plant epigenetics and epigenomics.
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Affiliation(s)
- Velimir Mladenov
- Faculty of Agriculture, University of Novi Sad, Sq. Dositeja Obradovića 8, 21000 Novi Sad, Serbia;
| | - Vasileios Fotopoulos
- Department of Agricultural Sciences, Biotechnology & Food Science, Cyprus University of Technology, Lemesos 3036, Cyprus;
| | - Eirini Kaiserli
- Institute of Molecular, Cell and Systems Biology, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, UK;
| | - Erna Karalija
- Laboratory for Plant Physiology, Department for Biology, Faculty of Science, University of Sarajevo, 71000 Sarajevo, Bosnia and Herzegovina;
| | - Stephane Maury
- INRAe, EA1207 USC1328 Laboratoire de Biologie des Ligneux et des Grandes Cultures, Université d’Orléans, 45067 Orléans, France;
| | - Miroslav Baranek
- Mendeleum—Insitute of Genetics, Faculty of Horticulture, Mendel University in Brno, Valtická 334, 69144 Lednice, Czech Republic;
| | - Naama Segal
- Israel Oceanographic and Limnological Research, The National Center for Mariculture (NCM), P.O.B. 1212, Eilat 88112, Israel;
| | - Pilar S. Testillano
- Center of Biological Research Margarita Salas, CIB-CSIC, Ramiro de Maeztu 9, 28040 Madrid, Spain;
| | - Valya Vassileva
- Department of Molecular Biology and Genetics, Institute of Plant Physiology and Genetics, Bulgarian Academy of Sciences, Acad. Georgi Bonchev Str., Bldg. 21, 1113 Sofia, Bulgaria;
| | - Glória Pinto
- Centre for Environmental and Marine Studies (CESAM), Biology Department, Campus de Santiago, University of Aveiro, 3810-193 Aveiro, Portugal;
| | - Manuela Nagel
- Genebank Department, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, 06466 Seeland, Germany;
| | - Hans Hoenicka
- Genomic Research Department, Thünen Institute of Forest Genetics, 22927 Grosshansdorf, Germany;
| | - Dragana Miladinović
- Laboratory for Biotechnology, Institute of Field and Vegetable Crops, Maksima Gorkog 30, 21000 Novi Sad, Serbia;
| | - Philippe Gallusci
- UMR Ecophysiologie et Génomique Fonctionnelle de la Vigne, Université de Bordeaux, INRAE, Bordeaux Science Agro, 210 Chemin de Leysotte—CS5000833882 Villenave d’Ornon, 33076 Bordeaux, France;
| | - Chiara Vergata
- Department of Biology, University of Florence, 50019 Sesto Fiorentino, Italy;
| | - Aliki Kapazoglou
- Department of Vitis, Institute of Olive Tree, Subtropical Crops and Viticulture (IOSV), Hellenic Agricultural Organization-Dimitra (HAO-Dimitra), Sofokli Venizelou 1, Lykovrysi, 14123 Athens, Greece;
| | - Eleni Abraham
- Laboratory of Range Science, School of Agriculture, Forestry and Natural Environment, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece;
| | - Eleni Tani
- Laboratory of Plant Breeding and Biometry, Department of Crop Science, Agricultural University of Athens, Iera Odos 75, 11855 Athens, Greece; (E.T.); (M.G.); (E.S.); (E.A.)
| | - Maria Gerakari
- Laboratory of Plant Breeding and Biometry, Department of Crop Science, Agricultural University of Athens, Iera Odos 75, 11855 Athens, Greece; (E.T.); (M.G.); (E.S.); (E.A.)
| | - Efi Sarri
- Laboratory of Plant Breeding and Biometry, Department of Crop Science, Agricultural University of Athens, Iera Odos 75, 11855 Athens, Greece; (E.T.); (M.G.); (E.S.); (E.A.)
| | - Evaggelia Avramidou
- Laboratory of Plant Breeding and Biometry, Department of Crop Science, Agricultural University of Athens, Iera Odos 75, 11855 Athens, Greece; (E.T.); (M.G.); (E.S.); (E.A.)
| | - Mateo Gašparović
- Chair of Photogrammetry and Remote Sensing, Faculty of Geodesy, University of Zagreb, 10000 Zagreb, Croatia;
| | - Federico Martinelli
- Department of Biology, University of Florence, 50019 Sesto Fiorentino, Italy;
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16
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Effect of Transgenic Rootstock Grafting on the Omics Profiles in Tomato. Food Saf (Tokyo) 2021; 9:32-47. [PMID: 34249588 PMCID: PMC8254850 DOI: 10.14252/foodsafetyfscj.d-20-00032] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2020] [Accepted: 05/12/2021] [Indexed: 11/21/2022] Open
Abstract
Grafting of non-transgenic scion onto genetically modified (GM) rootstocks provides superior
agronomic traits in the GM rootstock, and excellent fruits can be produced for consumption. In
such grafted plants, the scion does not contain any foreign genes, but the fruit itself is
likely to be influenced directly or indirectly by the foreign genes in the rootstock. Before
market release of such fruit products, the effects of grafting onto GM rootstocks should be
determined from the perspective of safety use. Here, we evaluated the effects of a transgene
encoding β-glucuronidase (GUS) on the grafted tomato fruits as a model case. An edible tomato
cultivar, Stella Mini Tomato, was grafted onto GM Micro-Tom tomato plants that had been
transformed with the GUS gene. The grafted plants showed no difference in
their fruit development rate and fresh weight regardless of the presence or absence of the
GUS gene in the rootstock. The fruit samples were subjected to transcriptome
(NGS-illumina), proteome (shotgun LC-MS/MS), metabolome (LC-ESI-MS and GC-EI-MS), and general
food ingredient analyses. In addition, differentially detected items were identified between
the grafted plants onto rootstocks with or without transgenes (more than two-fold). The
transcriptome analysis detected approximately 18,500 expressed genes on average, and only 6
genes were identified as differentially expressed. Principal component analysis of 2,442 peaks
for peptides in proteome profiles showed no significant differences. In the LC-ESI-MS and
GC-EI-MS analyses, a total of 93 peak groups and 114 peak groups were identified, respectively,
and only 2 peak groups showed more than two-fold differences. The general food ingredient
analysis showed no significant differences in the fruits of Stella scions between GM and non-GM
Micro-Tom rootstocks. These multiple omics data showed that grafting on the rootstock harboring
the GUS transgene did not induce any genetic or metabolic variation in the
scion.
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17
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Reinvigoration/Rejuvenation Induced through Micrografting of Tree Species: Signaling through Graft Union. PLANTS 2021; 10:plants10061197. [PMID: 34208406 PMCID: PMC8231136 DOI: 10.3390/plants10061197] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/04/2021] [Revised: 06/01/2021] [Accepted: 06/09/2021] [Indexed: 02/05/2023]
Abstract
Trees have a distinctive and generally long juvenile period during which vegetative growth rate is rapid and floral organs do not differentiate. Among trees, the juvenile period can range from 1 year to 15–20 years, although with some forest tree species, it can be longer. Vegetative propagation of trees is usually much easier during the juvenile phase than with mature phase materials. Therefore, reversal of maturity is often necessary in order to obtain materials in which rooting ability has been restored. Micrografting has been developed for trees to address reinvigoration/rejuvenation of elite selections to facilitate vegetative propagation. Generally, shoots obtained after serial grafting have increased rooting competence and develop juvenile traits; in some cases, graft-derived shoots show enhanced in vitro proliferation. Recent advances in graft signaling have shown that several factors, e.g., plant hormones, proteins, and different types of RNA, could be responsible for changes in the scion. The focus of this review includes (1) a discussion of the differences between the juvenile and mature growth phases in trees, (2) successful restoration of juvenile traits through micrografting, and (3) the nature of the different signals passing through the graft union.
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18
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Huang Y, Xu Y, Jiang X, Yu H, Jia H, Tan C, Hu G, Hu Y, Rao MJ, Deng X, Xu Q. Genome of a citrus rootstock and global DNA demethylation caused by heterografting. HORTICULTURE RESEARCH 2021; 8:69. [PMID: 33790260 PMCID: PMC8012640 DOI: 10.1038/s41438-021-00505-2] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2020] [Revised: 12/01/2020] [Accepted: 12/29/2020] [Indexed: 05/03/2023]
Abstract
Grafting is an ancient technique used for plant propagation and improvement in horticultural crops for at least 1,500 years. Citrus plants, with a seed-to-seed cycle of 5-15 years, are among the fruit crops that were probably domesticated by grafting. Poncirus trifoliata, a widely used citrus rootstock, can promote early flowering, strengthen stress tolerance, and improve fruit quality via scion-rootstock interactions. Here, we report its genome assembly using PacBio sequencing. We obtained a final genome of 303 Mb with a contig N50 size of 1.17 Mb and annotated 25,680 protein-coding genes. DNA methylome and transcriptome analyses indicated that the strong adaptability of P. trifoliata is likely attributable to its special epigenetic modification and expression pattern of resistance-related genes. Heterografting by using sweet orange as scion and P. trifoliata as rootstock and autografting using sweet orange as both scion and rootstock were performed to investigate the genetic effects of the rootstock. Single-base methylome analysis indicated that P. trifoliata as a rootstock caused DNA demethylation and a reduction in 24-nt small RNAs (sRNAs) in scions compared to the level observed with autografting, implying the involvement of sRNA-mediated graft-transmissible epigenetic modifications in citrus grafting. Taken together, the assembled genome for the citrus rootstock and the analysis of graft-induced epigenetic modifications provide global insights into the genetic effects of rootstock-scion interactions and grafting biology.
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Affiliation(s)
- Yue Huang
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), Huazhong Agricultural University, 430070, Wuhan, China
| | - Yuantao Xu
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), Huazhong Agricultural University, 430070, Wuhan, China
| | - Xiaolin Jiang
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), Huazhong Agricultural University, 430070, Wuhan, China
| | - Huiwen Yu
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), Huazhong Agricultural University, 430070, Wuhan, China
| | - Huihui Jia
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), Huazhong Agricultural University, 430070, Wuhan, China
| | - Chunming Tan
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), Huazhong Agricultural University, 430070, Wuhan, China
| | - Gang Hu
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), Huazhong Agricultural University, 430070, Wuhan, China
| | - Yibo Hu
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), Huazhong Agricultural University, 430070, Wuhan, China
| | - Muhammad Junaid Rao
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), Huazhong Agricultural University, 430070, Wuhan, China
| | - Xiuxin Deng
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), Huazhong Agricultural University, 430070, Wuhan, China
| | - Qiang Xu
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), Huazhong Agricultural University, 430070, Wuhan, China.
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19
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Hu R, Li Q, Huang Y, Zhao Y, Xiao L, Jing Q, Zou Y, Lin L. Intercropping with post-grafting generation of Solanum photeinocarpum decreases cadmium accumulation in soybean ( Glycine max). INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2021; 23:1124-1131. [PMID: 33528274 DOI: 10.1080/15226514.2021.1880366] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
A pot experiment was designed to explore the effects of different post-grafting generations of Solanum photeinocarpum Nakamura et Odashima intercropping on growth and cadmium (Cd) accumulation in soybeans (varieties: "Zaodou" and "Liaoxian"). Post generation of S. photeinocarpum (ungrafted, grafted on eggplant, potato, and tomato, respectively) were utilized to intercrop with two varieties of soybean in Cd-contaminated soil. Soybean monoculture was employed as a control. Consequently, intercropping with different post-grafting S. photeinocarpum generation, except for tomato rootstock grafts post-generation, could reduce soybean biomass and photosynthetic pigment content. Additionally, all S. photeinocarpum post-grafting generations had the capacity to reduce Cd content in soybean when intercropping, while tomato rootstock grafts post-generation exhibited an adequate ability to accumulate Cd in S. photeinocarpum compared to the ungrafted treatment. In particular, tomato rootstock grafts post-generation could effectively decrease Cd content in soybean organs by 14.09-62.13%, relative to soybean monoculture, but increased shoot Cd content and shoot Cd extraction of S. photeinocarpum by 10.33-13.49% and 10.38-12.03%, respectively, compared to the ungrafted treatment. Thus, tomato rootstock grafting may enhance the ability of post-grafting generation of S. photeinocarpum to remediate Cd-contaminated soil, and this grafting was able to reduce Cd accumulation in soybean.
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Affiliation(s)
- Rongping Hu
- College of Horticulture, Sichuan Agricultural University, Chengdu, China
- MOA Key Laboratory of Integrated Management of Pests on Crops in Southwest China, Institute of Plant Protection, Sichuan Academy of Agricultural Sciences, Chengdu, China
| | - Qinyuan Li
- College of Horticulture, Sichuan Agricultural University, Chengdu, China
| | - Yong Huang
- College of Horticulture, Sichuan Agricultural University, Chengdu, China
| | - Yan Zhao
- College of Horticulture, Sichuan Agricultural University, Chengdu, China
| | - Ling Xiao
- College of Horticulture, Sichuan Agricultural University, Chengdu, China
| | - Qianhe Jing
- College of Horticulture, Sichuan Agricultural University, Chengdu, China
| | - Yao Zou
- College of Horticulture, Sichuan Agricultural University, Chengdu, China
| | - Lijin Lin
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, China
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20
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Kapazoglou A, Tani E, Avramidou EV, Abraham EM, Gerakari M, Megariti S, Doupis G, Doulis AG. Epigenetic Changes and Transcriptional Reprogramming Upon Woody Plant Grafting for Crop Sustainability in a Changing Environment. FRONTIERS IN PLANT SCIENCE 2021; 11:613004. [PMID: 33510757 PMCID: PMC7835530 DOI: 10.3389/fpls.2020.613004] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/01/2020] [Accepted: 12/10/2020] [Indexed: 05/07/2023]
Abstract
Plant grafting is an ancient agricultural practice widely employed in crops such as woody fruit trees, grapes, and vegetables, in order to improve plant performance. Successful grafting requires the interaction of compatible scion and rootstock genotypes. This involves an intricate network of molecular mechanisms operating at the graft junction and associated with the development and the physiology of the scion, ultimately leading to improved agricultural characteristics such as fruit quality and increased tolerance/resistance to abiotic and biotic factors. Bidirectional transfer of molecular signals such as hormones, nutrients, proteins, and nucleic acids from the rootstock to the scion and vice versa have been well documented. In recent years, studies on rootstock-scion interactions have proposed the existence of an epigenetic component in grafting reactions. Epigenetic changes such as DNA methylation, histone modification, and the action of small RNA molecules are known to modulate chromatin architecture, leading to gene expression changes and impacting cellular function. Mobile small RNAs (siRNAs) migrating across the graft union from the rootstock to the scion and vice versa mediate modifications in the DNA methylation pattern of the recipient partner, leading to altered chromatin structure and transcriptional reprogramming. Moreover, graft-induced DNA methylation changes and gene expression shifts in the scion have been associated with variations in graft performance. If these changes are heritable they can lead to stably altered phenotypes and affect important agricultural traits, making grafting an alternative to breeding for the production of superior plants with improved traits. However, most reviews on the molecular mechanisms underlying this process comprise studies related to vegetable grafting. In this review we will provide a comprehensive presentation of the current knowledge on the epigenetic changes and transcriptional reprogramming associated with the rootstock-scion interaction focusing on woody plant species, including the recent findings arising from the employment of advanced-omics technologies as well as transgrafting methodologies and their potential exploitation for generating superior quality grafts in woody species. Furthermore, will discuss graft-induced heritable epigenetic changes leading to novel plant phenotypes and their implication to woody crop improvement for yield, quality, and stress resilience, within the context of climate change.
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Affiliation(s)
- Aliki Kapazoglou
- Department of Vitis, Institute of Olive Tree, Subtropical Crops and Viticulture (IOSV), Hellenic Agricultural Organization-Demeter (HAO-Demeter), Athens, Greece
| | - Eleni Tani
- Laboratory of Plant Breeding and Biometry, Department of Crop Science, Agricultural University of Athens, Athens, Greece
| | - Evangelia V. Avramidou
- Laboratory of Forest Genetics and Biotechnology, Institute of Mediterranean Forest Ecosystems, Athens, Hellenic Agricultural Organization-Demeter (HAO-Demeter), Athens, Greece
| | - Eleni M. Abraham
- Laboratory of Range Science, Faculty of Forestry and Natural Environment, Aristotle University of Thessaloniki, Thessaloniki, Greece
| | - Maria Gerakari
- Laboratory of Plant Breeding and Biometry, Department of Crop Science, Agricultural University of Athens, Athens, Greece
| | - Stamatia Megariti
- Laboratory of Plant Breeding and Biometry, Department of Crop Science, Agricultural University of Athens, Athens, Greece
| | - Georgios Doupis
- Department of Viticulture, Vegetable Crops, Floriculture and Plant Protection, Institute of Olive Tree, Sub-Tropical Crops and Viticulture, Hellenic Agricultural Organization-Demeter (HAO-Demeter) (fr. NAGREF), Heraklion, Greece
| | - Andreas G. Doulis
- Department of Viticulture, Vegetable Crops, Floriculture and Plant Protection, Institute of Olive Tree, Sub-Tropical Crops and Viticulture, Hellenic Agricultural Organization-Demeter (HAO-Demeter) (fr. NAGREF), Heraklion, Greece
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21
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Tsaballa A, Xanthopoulou A, Madesis P, Tsaftaris A, Nianiou-Obeidat I. Vegetable Grafting From a Molecular Point of View: The Involvement of Epigenetics in Rootstock-Scion Interactions. FRONTIERS IN PLANT SCIENCE 2021; 11:621999. [PMID: 33488662 PMCID: PMC7817540 DOI: 10.3389/fpls.2020.621999] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/27/2020] [Accepted: 12/07/2020] [Indexed: 05/25/2023]
Abstract
Vegetable grafting is extensively used today in agricultural production to control soil-borne pathogens, abiotic and biotic stresses and to improve phenotypic characteristics of the scion. Commercial vegetable grafting is currently practiced in tomato, watermelon, melon, eggplant, cucumber, and pepper. It is also regarded as a rapid alternative to the relatively slow approach of breeding for increased environmental-stress tolerance of fruit vegetables. However, even though grafting has been used for centuries, until today, there are still many issues that have not been elucidated. This review will emphasize on the important mechanisms taking place during grafting, especially the genomic interactions between grafting partners and the impact of rootstocks in scion's performance. Special emphasis will be drawn on the relation between vegetable grafting, epigenetics, and the changes in morphology and quality of the products. Recent advances in plant science such as next-generation sequencing provide new information regarding the molecular interactions between rootstock and scion. It is now evidenced that genetic exchange is happening across grafting junctions between rootstock and scion, potentially affecting grafting-mediated effects already recorded in grafted plants. Furthermore, significant changes in DNA methylation are recorded in grafted scions, suggesting that these epigenetic mechanisms could be implicated in grafting effects. In this aspect, we also discuss the process and the molecular aspects of rootstock scion communication. Finally, we provide with an extensive overview of gene expression changes recorded in grafted plants and how these are related to the phenotypic changes observed. Τhis review finally seeks to elucidate the dynamics of rootstock-scion interactions and thus stimulate more research on grafting in the future. In a future where sustainable agricultural production is the way forward, grafting could play an important role to develop products of higher yield and quality in a safe and "green" way.
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Affiliation(s)
- Aphrodite Tsaballa
- Institute of Plant Breeding and Genetic Resources, Hellenic Agricultural Organization (ELGO-Dimitra), Thessaloniki, Greece
| | - Aliki Xanthopoulou
- Institute of Plant Breeding and Genetic Resources, Hellenic Agricultural Organization (ELGO-Dimitra), Thessaloniki, Greece
| | - Panagiotis Madesis
- Laboratory of Molecular Biology of Plants, School of Agricultural Sciences, University of Thessaly, Volos, Greece
- Institute of Applied Biosciences, Centre for Research & Technology Hellas, Thessaloniki, Greece
| | - Athanasios Tsaftaris
- Perrotis College, American Farm School, Thessaloniki, Greece
- Laboratory of Genetics and Plant Breeding, School of Agriculture, Forestry and Natural Environment, Aristotle University of Thessaloniki, Thessaloniki, Greece
| | - Irini Nianiou-Obeidat
- Laboratory of Genetics and Plant Breeding, School of Agriculture, Forestry and Natural Environment, Aristotle University of Thessaloniki, Thessaloniki, Greece
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22
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Abstract
Mobile signals play pivotal roles in coordinating interorgan communication. Grafting provides an effective strategy to identify and explore the movement of the mobile signals. The mutant collection of Arabidopsis offers background-free living materials for examining the transport of mobile signals in vivo. In the past few years, many grafting methods have been developed to overcome the limitations of rosette-type growth and small size in Arabidopsis. Here we describe a non-sterile grafting method involving an insect pin to secure the scion to the rootstock. The scions can be grafted onto epicotyls or hypocotyls of soil-grown Arabidopsis rootstocks at a wide range of developmental stages. This grafting method provides a useful tool to analyze leaf-derived mobile signals in Arabidopsis.
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23
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Wang X, Li H, Liu Y, Cui T, Liao M, Lin L, Wang Z, Deng H, Liang D, Xia H, Tang Y. Mowing enhances the phytoremediation ability of cadmium-contaminated soil in the post-grafting generations of potential cadmium-hyperaccumulator Solanum photeinocarpum. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2020; 23:652-657. [PMID: 33197328 DOI: 10.1080/15226514.2020.1847036] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
The study aimed at accessing the effects of mowing on the growth and cadmium (Cd) accumulation of the first post-grafting generation of potential Cd-hyperaccumulator plant Solanum photeinocarpum through the pot and plot experiments. Four grafting treatments were employed such as ungrafted (UG), self-rooted grafting by the same S. photeinocarpum seedling (SG), self-rooted grafting by two different development stages of S. photeinocarpum seedlings (DG), and grafting on the rootstock of wild potato (PG). The biomass, Cd content, and Cd extraction amount of S. photeinocarpum shoots significantly decreased with the increase of mowing times in the pot and plot experiments. The order of the grafting on the biomass, Cd content, and Cd extraction amountof in the first, second, third mowing shoots were PG > DG > SG > UG. For the Cd extraction amountof total moving shoots, SG, DG, and PG increased by 20.42%, 35.54%, and 52.94%, respectively, in the pot experiment, and increased by 11.56%, 26.28%, and 44.90%, respectively, in the plot experiment, compared with the UG. Therefore, mowing provides an insight into the phytoremediation ability of S. photeinocarpum to Cd.
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Affiliation(s)
- Xun Wang
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Sichuan, Chengdu, China
| | - Hongyan Li
- Chongqing Academy of Forestry Sciences, Chongqing, China
| | - Yujia Liu
- College of Horticulture, Sichuan Agricultural University, Sichuan, Chengdu, China
| | - Tonghao Cui
- College of Horticulture, Sichuan Agricultural University, Sichuan, Chengdu, China
| | - Ming'an Liao
- College of Horticulture, Sichuan Agricultural University, Sichuan, Chengdu, China
| | - Lijin Lin
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Sichuan, Chengdu, China
| | - Zhihui Wang
- College of Horticulture, Sichuan Agricultural University, Sichuan, Chengdu, China
| | - Honghong Deng
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Sichuan, Chengdu, China
| | - Dong Liang
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Sichuan, Chengdu, China
| | - Hui Xia
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Sichuan, Chengdu, China
| | - Yi Tang
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Sichuan, Chengdu, China
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24
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Interspecific grafting between Gossypium hirsutum, G. barbadense and G. herbaceum lines. Sci Rep 2020; 10:18649. [PMID: 33122752 PMCID: PMC7596078 DOI: 10.1038/s41598-020-75679-1] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2020] [Accepted: 10/15/2020] [Indexed: 12/29/2022] Open
Abstract
Seedling grafting could provide additional crop improvement strategies for cotton. However, there existed limited studies on interspecific grafting and approaches. Four different grafting approaches were developed and compared between lines representing three of the four cultivated cotton species G. hirsutum, G. barbadense and G. herbaceum. Grafting approaches of this study focused on the cotyledon node and cotyledon leaves retained on scions, rootstocks, without cotyledon node and cotyledon leaves on scions and rootstocks or halved cotyledon node and single cotyledon leaf on scions and rootstocks. Evaluations of the grafting approaches were made by comparing survival and growth rate during the second and fifth weeks after transplantation, respectively. The formation of any lateral shoots at the grafted sites were studied in two of four grafting approaches in the first and the second year during flowering stage. DNA alterations due to grafting were investigated using microsatellite markers. There were no statistically significant differences between grafts and their control in survival rate and locus specific DNA alteration. Growth rate and lateral shoot formation, on the other hand, were different among grafting types and grafts. We concluded that grafting without cotyledon node and cotyledon leaves on rootstocks, and with cotyledon node but without cotyledon leaves on scions were easy to perform and suitable for interspecific cotton grafting. Results suggested that grafting seedlings and allowing time to heal graft wounds prior to spring transplanting or double cropping is suitable for wheat–cotton intercropping to prevent late or early chilling damage associated with seed sowing or conventional transplanting of susceptible seedlings. Furthermore, the rapid and consistent wound healing in seedling grafts along with lateral shoot formation occurring in two of four grafting approaches make them a suitable approach to investigate possible genetic and epigenetic movement between scions and rootstocks, especially across species.
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25
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Lin L, Sun J, Cui T, Zhou X, Liao M, Huan Y, Yang L, Wu C, Xia X, Wang Y, Li Z, Zhu J, Wang Z. Selenium accumulation characteristics of Cyphomandra betacea ( Solanum betaceum) seedlings. PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS : AN INTERNATIONAL JOURNAL OF FUNCTIONAL PLANT BIOLOGY 2020; 26:1375-1383. [PMID: 32647455 PMCID: PMC7326803 DOI: 10.1007/s12298-020-00838-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2020] [Revised: 04/23/2020] [Accepted: 06/12/2020] [Indexed: 05/13/2023]
Abstract
A pot experiment was conducted to study the selenium (Se) accumulation characteristics and the tolerance of Cyphomandra betacea (Solanum betaceum) seedlings under different soil Se concentrations. The 5 mg/kg soil Se concentration increased the C. betacea seedling biomass and photosynthetic pigment contents (chlorophyll a, chlorophyll b, total chlorophyll, and carotenoid), whereas the other soil Se concentrations (10, 25, and 50 mg/kg) inhibited seedling growth. Increases in the soil Se concentrations tended to decrease the superoxide dismutase activity and soluble protein content, but had the opposite effect on the peroxidase and catalase activities. The 5, 10, and 25 mg/kg soil Se concentrations decreased the DNA methylation levels of C. betacea seedlings because of an increase in demethylation patterns (versus 0 mg/kg), whereas the 50 mg/kg soil Se concentration increased the DNA methylation levels because of an increase in hypermethylation patterns (versus 0 mg/kg). Increases in the soil Se concentrations were accompanied by an increasing trend in the Se content of C. betacea seedlings. Moreover, the amount of Se extracted by the shoots was highest for the 25 mg/kg soil Se concentration. Therefore, C. betacea may be able to accumulate relatively large amounts of Se and its growth may be promoted in 5 mg/kg soil Se.
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Affiliation(s)
- Linjin Lin
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan China
| | - Jing Sun
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan China
| | - Tonghao Cui
- College of Horticulture, Sichuan Agricultural University, Chengdu, Sichuan China
| | - Xiong Zhou
- College of Horticulture, Sichuan Agricultural University, Chengdu, Sichuan China
| | - Ming’an Liao
- College of Horticulture, Sichuan Agricultural University, Chengdu, Sichuan China
| | - Yunmin Huan
- College of Horticulture, Sichuan Agricultural University, Chengdu, Sichuan China
| | - Liu Yang
- College of Horticulture, Sichuan Agricultural University, Chengdu, Sichuan China
| | - Caifang Wu
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan China
| | - Xianmin Xia
- College of Horticulture, Sichuan Agricultural University, Chengdu, Sichuan China
| | - Yuxi Wang
- College of Horticulture, Sichuan Agricultural University, Chengdu, Sichuan China
| | - Zhiyu Li
- College of Horticulture, Sichuan Agricultural University, Chengdu, Sichuan China
| | - Jinpeng Zhu
- College of Horticulture, Sichuan Agricultural University, Chengdu, Sichuan China
| | - Zhihui Wang
- College of Horticulture, Sichuan Agricultural University, Chengdu, Sichuan China
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26
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Huang K, Yang L, Liu Q, Lin L, Liao M, Deng Q, Liang D, Xia H, Wang X, Wang J, Lv X, Tang Y. Effects of reciprocal grafting on cadmium accumulation in post-grafting generations of two ecotypes of Solanum photeinocarpum. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2020; 22:1338-1347. [PMID: 32524826 DOI: 10.1080/15226514.2020.1774738] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Farmland and mining ecotypes of the potential cadmium (Cd)-hyperaccumulator Solanum photeinocarpum were collected to study the effects of reciprocal grafting on the growth of, and Cd accumulation in, the post-grafting generations. The post generations of the following plant materials were evaluated in a pot experiment: the un-grafted farmland ecotype, grafted plants with the farmland ecotype as the scion or the rootstock, the un-grafted mining ecotype, and grafted plants with the mining ecotype as the scion or the rootstock. The results showed that reciprocal grafting increased the biomass, the activities of superoxide dismutase, peroxidase, and catalase, and the soluble protein content in the post-grafting generations of both ecotypes S. photeinocarpum. Reciprocal grafting also increased the Cd content in, and amount of Cd extracted by, the post-grafting generations of both ecotypes S. photeinocarpum as a result of lower soil pH and higher soil available Cd concentrations. Additionally, grafting affected the DNA methylation levels by inducing hypermethylation or demethylation in the post-grafting generation. Therefore, reciprocal grafting can enhance the Cd accumulation (phytoremediation) capacity of post-grafting generations of both ecotypes S. photeinocarpum by affecting DNA methylation levels.
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Affiliation(s)
- Kewen Huang
- College of Horticulture, Sichuan Agricultural University, Chengdu, China
| | - Liu Yang
- College of Horticulture, Sichuan Agricultural University, Chengdu, China
| | - Qin Liu
- College of Horticulture, Sichuan Agricultural University, Chengdu, China
| | - Lijin Lin
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, China
| | - Ming'an Liao
- College of Horticulture, Sichuan Agricultural University, Chengdu, China
| | - Qunxian Deng
- College of Horticulture, Sichuan Agricultural University, Chengdu, China
| | - Dong Liang
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, China
| | - Hui Xia
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, China
| | - Xun Wang
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, China
| | - Jin Wang
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, China
| | - Xiulan Lv
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, China
| | - Yi Tang
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, China
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27
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Lu X, Liu W, Wang T, Zhang J, Li X, Zhang W. Systemic Long-Distance Signaling and Communication Between Rootstock and Scion in Grafted Vegetables. FRONTIERS IN PLANT SCIENCE 2020; 11:460. [PMID: 32431719 PMCID: PMC7214726 DOI: 10.3389/fpls.2020.00460] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/18/2020] [Accepted: 03/27/2020] [Indexed: 05/06/2023]
Abstract
Grafting is widely used in fruit, vegetable, and flower propagation to improve biotic and abiotic stress resistance, yield, and quality. At present, the systemic changes caused by grafting, as well as the mechanisms and effects of long-distance signal transport between rootstock and scion have mainly been investigated in model plants (Arabidopsis thaliana and Nicotiana benthamiana). However, these aspects of grafting vary when different plant materials are grafted, so the study of model plants provides only a theoretical basis and reference for the related research of grafted vegetables. The dearth of knowledge about the transport of signaling molecules in grafted vegetables is inconsistent with the rapid development of large-scale vegetable production, highlighting the need to study the mechanisms regulating the rootstock-scion interaction and long-distance transport. The rapid development of molecular biotechnology and "omics" approaches will allow researchers to unravel the physiological and molecular mechanisms involved in the rootstock-scion interaction in vegetables. We summarize recent progress in the study of the physiological aspects (e.g., hormones and nutrients) of the response in grafted vegetables and focus in particular on long-distance molecular signaling (e.g., RNA and proteins). This review provides a theoretical basis for studies of the rootstock-scion interaction in grafted vegetables, as well as provide guidance for rootstock breeding and selection to meet specific demands for efficient vegetable production.
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Affiliation(s)
| | | | | | | | | | - Wenna Zhang
- Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, China Agricultural University, Beijing, China
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28
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Li H, Wang J, Lin L, Liao M, Lv X, Tang Y, Wang X, Xia H, Liang D, Ren W, Jiang W. Effects of mutual grafting on cadmium accumulation characteristics of first post-generations of Bidens pilosa L. and Galinsoga parviflora Cav. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2019; 26:33228-33235. [PMID: 31520390 DOI: 10.1007/s11356-019-06498-9] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2019] [Accepted: 09/10/2019] [Indexed: 06/10/2023]
Abstract
We studied the effects of mutual grafting on cadmium (Cd) accumulation characteristics on the first post-generations of the Cd-hyperaccumulator plants Bidens pilosa L. and Galinsoga parviflora Cav. The seeds from scions and rootstocks of B. pilosa and G. parviflora were collected and planted in Cd-contaminated soil in pot and field experiments. In the pot experiment, rootstock treatment increased the shoot biomass of B. pilosa post-grafting generations, compared with ungrafted B. pilosa, but decreased the Cd content in shoots and Cd extraction by shoots of post-grafting generations; scion treatment decreased or had no significant effect. Mutual grafting resulted in no significant differences to the photosynthetic pigment contents in B. pilosa post-grafting generations. Compared with ungrafted G. parviflora, scion treatment increased the shoot biomass, photosynthetic pigment content, and Cd extraction by shoots of G. parviflora post-grafting generations, but rootstock treatment did not lead to significant differences. Mutual grafting resulted in no significant differences to the Cd contents in shoots of G. parviflora post-grafting generations. In the field experiment, only rootstock treatment increased the shoot biomass of B. pilosa post-grafting generations, and only scion treatment increased the shoot biomass and the Cd extraction by shoots of G. parviflora post-grafting generations. Therefore, mutual grafting of scions may enhance the phytoremediation ability of G. parviflora first post-grafting generations.
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Affiliation(s)
- Hongyan Li
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, 611130, China
| | - Jin Wang
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, 611130, China
| | - Lijin Lin
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, 611130, China.
| | - Ming'an Liao
- College of Horticulture, Sichuan Agricultural University, Chengdu, 611130, China
| | - Xiulan Lv
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, 611130, China
| | - Yi Tang
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, 611130, China
| | - Xun Wang
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, 611130, China
| | - Hui Xia
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, 611130, China
| | - Dong Liang
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, 611130, China
| | - Wei Ren
- Maize Research Institute, Neijiang Academy of Agricultural Sciences, Neijiang, 641000, China
| | - Wei Jiang
- College of Chemistry and Life Science, Chengdu Normal University, Chengdu, Sichuan, China
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29
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Wang J, Yao H, Lin L, Tang Y, Liang D, Xia H, Lv X, Liao M, Sun G, Li H, Wang X, Ren W. Effects of self-rooted grafting on growth and cadmium accumulation in post-grafting generations of soybean (Glycine max). ENVIRONMENTAL MONITORING AND ASSESSMENT 2019; 191:609. [PMID: 31486904 DOI: 10.1007/s10661-019-7787-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2019] [Accepted: 08/27/2019] [Indexed: 06/10/2023]
Abstract
A study was performed to determine whether self-rooted grafting decreases cadmium (Cd) accumulation in post-grafting soybean (Glycine max (Linn.) Merrill) generations. Pot experiments were performed using ungrafted (UG) seedlings, self-rooted grafting from the same soybean seedling (SG), self-rooted grafting from two soybean seedlings at the same growth stage (TG), and self-rooted grafting from two soybean seedlings at different developmental stages (DG). Growth and Cd accumulation in three post-grafting soybean generations were assessed. In the SG treatment, only the second post-grafting generation had increased shoot biomass and only the first post-grafting generation shoots had decreased Cd contents. The seed Cd content, soluble protein content, and antioxidant enzyme activity were not significantly affected in three post-grafting generations. In the TG and DG treatments, shoot biomass, soluble protein content, and antioxidant enzyme activities were increased, and the shoot and seed Cd contents were decreased in three post-grafting generations. The seed Cd contents in the first, second, and third post-grafting generations were 15.00%, 9.46%, and 12.44%, respectively, lower in the TG than UG treatments. The seed Cd contents in the first, second, and third post-grafting generations were 32.73%, 27.03%, and 32.22%, respectively, lower in the DG than UG treatments. Different grafting methods promoted growth and decreased Cd accumulation to different degrees in three post-grafting generations. Grafting seedlings at different developmental stages had the strongest effects.
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Affiliation(s)
- Jin Wang
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Huan Yao
- College of Life Sciences, Sichuan University, Chengdu, China
| | - Lijin Lin
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, China.
| | - Yi Tang
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Dong Liang
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Hui Xia
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Xiulan Lv
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Ming'an Liao
- College of Horticulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Guochao Sun
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Huanxiu Li
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Xun Wang
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Wei Ren
- Maize Research Institute, Neijiang Academy of Agricultural Sciences, Neijiang, Sichuan, China
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Wang J, Tan Y, Liao M, Lin L, Tang Y, Zhang H, Xia H, Liang D, Deng Q, Lv X, Chen C, Ren W. Self-rooted grafting influences the growth and cadmium accumulation characteristics in the post generation of Cosmos sulphureus. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2019; 26:26822-26828. [PMID: 31300986 DOI: 10.1007/s11356-019-05906-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2018] [Accepted: 07/03/2019] [Indexed: 06/10/2023]
Abstract
To determine whether self-rooted grafting increases the cadmium (Cd) accumulation in post generations of hyperaccumulator or accumulator plants, a pot experiment was conducted to study the effects of self-rooted grafting on growth and Cd accumulation in the post generation of the accumulator plant Cosmos sulphureus. Four treatments were applied in the experiment with soil Cd concentration of 5 mg kg-1: ungrafted (UG), self-rooted grafting of the same C. sulphureus seedling (SG), self-rooted grafting of two C. sulphureus seedlings at the same growth stage (TG), and self-rooted grafting of two C. sulphureus seedlings at different developmental stages (DG). Compared with those of UG plants, the SG, TG, and DG treatments increased the root, stem, leaf, and shoot biomasses of plants in the post-grafting generation, consistent with the rank order DG > TG > SG > UG. The SG, TG, and DG treatments decreased the Cd contents in different organs of the post-grafting generation compared with those of UG plants. Only DG increased Cd extraction by the shoots in the post-grafting generation, which was increased by 6.28% compared with that of the UG treatment. In addition, SG, TG, and DG increased the photosynthetic pigment contents and enhanced antioxidant enzyme activities in the post-grafting generation compared with those of the UG treatment. Thus, self-rooted grafting promoted growth of C. sulphureus plants in the post generation. The DG treatment increased Cd extraction by C. sulphureus plants in the post-grafting generation, which may be exploited for phytoremediation of urban Cd-contaminated soil.
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Affiliation(s)
- Jin Wang
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Yumei Tan
- College of Horticulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Ming'an Liao
- College of Horticulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Lijin Lin
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, China.
| | - Yi Tang
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Huifen Zhang
- College of Horticulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Hui Xia
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Dong Liang
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Qunxian Deng
- College of Horticulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Xiulan Lv
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Cheng Chen
- College of Economics, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Wei Ren
- Maize Research Institute, Neijiang Academy of Agricultural Sciences, Neijiang, Sichuan, China
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Molecular Responses during Plant Grafting and Its Regulation by Auxins, Cytokinins, and Gibberellins. Biomolecules 2019; 9:biom9090397. [PMID: 31443419 PMCID: PMC6770456 DOI: 10.3390/biom9090397] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2019] [Revised: 08/20/2019] [Accepted: 08/21/2019] [Indexed: 12/25/2022] Open
Abstract
Plant grafting is an important horticulture technique used to produce a new plant after joining rootstock and scion. This is one of the most used techniques by horticulturists to enhance the quality and production of various crops. Grafting helps in improving the health of plants, their yield, and the quality of plant products, along with the enhancement of their postharvest life. The main process responsible for successful production of grafted plants is the connection of vascular tissues. This step determines the success rate of grafts and hence needs to be studied in detail. There are many factors that regulate the connection of scion and stock, and plant hormones are of special interest for researchers in the recent times. These phytohormones act as signaling molecules and have the capability of translocation across the graft union. Plant hormones, mainly auxins, cytokinins, and gibberellins, play a major role in the regulation of various key physiological processes occurring at the grafting site. In the current review, we discuss the molecular mechanisms of graft development and the phytohormone-mediated regulation of the growth and development of graft union.
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Xia H, Wang Y, Liao M, Lin L, Zhang F, Tang Y, Zhang H, Wang J, Liang D, Deng Q, Lv X, Chen C, Ren W. Effects of different rootstocks on cadmium accumulation characteristics of the post-grafting generations of Galinsoga parviflora. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2019; 22:62-68. [PMID: 31321987 DOI: 10.1080/15226514.2019.1644287] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
A pot experiment was conducted to study the effects of different rootstocks on the cadmium (Cd) accumulation characteristics of the post-grafting generations of Cd-hyperaccumulator Galinsoga parviflora plants. Five treatments, ungrafted and G. parviflora seedlings grafted on the rootstocks of Kalimeris indica, Senecio scandens, Conyza canadensis, and Artemisia sieversiana, were utilized. The four rootstock grafts decreased the shoot biomass of the G. parviflora post-grafting generation compared with ungrafted. The K. indica and S. scandens grafts increased the Cd concentration in shoots of the G. parviflora post-grafting generation by 15.06% and 14.40%, respectively, compared with ungrafted, while the C. canadensis and A. sieversiana grafts had no significant effects. K. indica grafts increased the amount of Cd extracted by shoots of the G. parviflora post-grafting generation by 10.59% compared with ungrafted, while the other treatments resulted in decreases. Compared with ungrafted, the different rootstocks had no significant effects on the photosynthetic pigment content of the G. parviflora post-grafting generation, and only C. canadensis grafts increased the superoxide dismutase activity level, while only K. indica grafts increased the peroxidase activity level. Therefore, the K. indica rootstock could increase the phytoremediation capability of G. parviflora post-grafted plants grown in Cd-contaminated soil.
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Affiliation(s)
- Hui Xia
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Ya'nan Wang
- College of Horticulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Ming'an Liao
- College of Horticulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Lijin Lin
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Fenqin Zhang
- College of Agriculture and Biological Technology, Hexi University, Zhangye, Gansu, China
| | - Yi Tang
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Huifen Zhang
- College of Horticulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Jin Wang
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Dong Liang
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Qunxian Deng
- College of Horticulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Xiulan Lv
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Cheng Chen
- College of Economics, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Wei Ren
- Maize Research Institute, Neijiang Academy of Agricultural Sciences, Neijiang, Sichuan, China
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Zhang X, Zhang F, Wang J, Lin L, Liao M, Tang Y, Sun G, Wang X, Lv X, Deng Q, Chen C, Ren W. Cutting after grafting affects the growth and cadmium accumulation of Nasturtium officinale. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2019; 26:15436-15442. [PMID: 30937751 DOI: 10.1007/s11356-019-04977-7] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/27/2018] [Accepted: 03/25/2019] [Indexed: 06/09/2023]
Abstract
The growth and cadmium (Cd) accumulation of emergent plant Nasturtium officinale R. Br. cuttings taken from plants grafted onto rootstocks of four terrestrial Cruciferae species were studied in a pot experiment. Scions from N. officinale seedlings were grafted onto rootstocks of Brassica chinensis L., Raphanus sativus L., Brassica napus L., and Rorippa dubia (Pers.) H. Hara. Cuttings were taken after 1 month and grown in Cd-contaminated soil (10 mg Cd kg-1) for 60 days. Compared with non-grafted N. officinale, grafting onto R. sativus and B. napus rootstocks increased the root, shoot, and whole plant biomasses of N. officinale cuttings. Brassica napus rootstock was more effective than R. sativus rootstock for increasing the biomass of N. officinale cuttings. The four rootstocks decreased or had no significant effect on photosynthetic pigment contents in N. officinale cuttings compared with non-grafted N. officinale. Only grafting onto B. napus rootstock enhanced antioxidant enzyme activities. Compared with non-grafted N. officinale, R. sativus and B. napus rootstocks decreased the Cd contents in roots and shoots of N. officinale cuttings, whereas the other rootstocks had no significant effect on the shoot Cd content. The four rootstocks had no increase effects on Cd extraction by N. officinale cuttings. Therefore, cutting after grafting did not enhance the phytoremediation ability of N. officinale for growth in Cd-contaminated soil. However, R. sativus and B. napus rootstocks decreased the Cd content in N. officinale cuttings, which offers a potential approach for N. officinale safety production as a wild vegetable in Cd-contaminated soils.
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Affiliation(s)
- Xingyu Zhang
- College of Horticulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Fenqin Zhang
- College of Agriculture and Biological Technology, Hexi University, Zhangye, Gansu, China
| | - Jin Wang
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Lijin Lin
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, China.
| | - Ming'an Liao
- College of Horticulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Yi Tang
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Guochao Sun
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Xun Wang
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Xiulan Lv
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Qunxian Deng
- College of Horticulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Cheng Chen
- College of Economics, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Wei Ren
- Maize Research Institute, Neijiang Academy of Agricultural Sciences, Neijiang, Sichuan, China
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Gautier AT, Chambaud C, Brocard L, Ollat N, Gambetta GA, Delrot S, Cookson SJ. Merging genotypes: graft union formation and scion-rootstock interactions. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:747-755. [PMID: 30481315 DOI: 10.1093/jxb/ery422] [Citation(s) in RCA: 35] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/10/2018] [Accepted: 11/19/2018] [Indexed: 05/18/2023]
Abstract
Grafting has been utilised for at least the past 7000 years. Historically, grafting has been developed by growers without particular interest beyond the agronomical and ornamental effects, and thus knowledge about grafting has remained largely empirical. Much of the commercial production of fruit, and increasingly vegetables, relies upon grafting with rootstocks to provide resistance to soil-borne pathogens and abiotic stresses as well as to influence scion growth and performance. Although there is considerable agronomic knowledge about the use and selection of rootstocks for many species, we know little of the molecular mechanisms underlying rootstock adaptation to different soil environments and rootstock-conferred modifications of scion phenotypes. Furthermore, the processes involved in the formation of the graft union and graft compatibility are poorly understood despite over a hundred years of scientific study. In this paper, we provide an overview of what is known about grafting and the mechanisms underlying rootstock-scion interactions. We highlight recent studies that have advanced our understanding of graft union formation and outline subjects that require further development.
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Affiliation(s)
- Antoine T Gautier
- EGFV, Bordeaux Sciences Agro, INRA, Université de Bordeaux, ISVV, Chemin de Leysotte, Villenave d'Ornon, France
| | - Clément Chambaud
- EGFV, Bordeaux Sciences Agro, INRA, Université de Bordeaux, ISVV, Chemin de Leysotte, Villenave d'Ornon, France
| | - Lysiane Brocard
- Université de Bordeaux, CNRS, INSERM, UMS, INRA, Bordeaux Imaging Center, Plant Imaging Plateform, Villenave d'Ornon, France
| | - Nathalie Ollat
- EGFV, Bordeaux Sciences Agro, INRA, Université de Bordeaux, ISVV, Chemin de Leysotte, Villenave d'Ornon, France
| | - Gregory A Gambetta
- EGFV, Bordeaux Sciences Agro, INRA, Université de Bordeaux, ISVV, Chemin de Leysotte, Villenave d'Ornon, France
| | - Serge Delrot
- EGFV, Bordeaux Sciences Agro, INRA, Université de Bordeaux, ISVV, Chemin de Leysotte, Villenave d'Ornon, France
| | - Sarah J Cookson
- EGFV, Bordeaux Sciences Agro, INRA, Université de Bordeaux, ISVV, Chemin de Leysotte, Villenave d'Ornon, France
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Rootstocks Shape the Rhizobiome: Rhizosphere and Endosphere Bacterial Communities in the Grafted Tomato System. Appl Environ Microbiol 2019; 85:AEM.01765-18. [PMID: 30413478 DOI: 10.1128/aem.01765-18] [Citation(s) in RCA: 45] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2018] [Accepted: 10/23/2018] [Indexed: 12/21/2022] Open
Abstract
Root-associated microbes are critical to plant health and performance, although understanding of the factors that structure these microbial communities and the theory to predict microbial assemblages are still limited. Here, we use a grafted tomato system to study the effects of rootstock genotypes and grafting in endosphere and rhizosphere microbiomes that were evaluated by sequencing 16S rRNA. We compared the microbiomes of nongrafted tomato cultivar BHN589, self-grafted BHN589, and BHN589 grafted to Maxifort or RST-04-106 hybrid rootstocks. Operational taxonomic unit (OTU)-based bacterial diversity was greater in Maxifort compared to the nongrafted control, whereas bacterial diversity in the controls (self-grafted and nongrafted) and the other rootstock (RST-04-106) was similar. Grafting itself did not affect bacterial diversity; diversity in the self-graft was similar to that of the nongraft. Bacterial diversity was higher in the rhizosphere than in the endosphere for all treatments. However, despite the lower overall diversity, there was a greater number of differentially abundant OTUs (DAOTUs) in the endosphere, with the greatest number of DAOTUs associated with Maxifort. In a permutational multivariate analysis of variance (PERMANOVA), there was evidence for an effect of rootstock genotype on bacterial communities. The endosphere-rhizosphere compartment and study site explained a high percentage of the differences among bacterial communities. Further analyses identified OTUs responsive to rootstock genotypes in both the endosphere and rhizosphere. Our findings highlight the effects of rootstocks on bacterial diversity and composition. The influence of rootstock and plant compartment on microbial communities indicates opportunities for the development of designer communities and microbiome-based breeding to improve future crop production.IMPORTANCE Understanding factors that control microbial communities is essential for designing and supporting microbiome-based agriculture. In this study, we used a grafted tomato system to study the effect of rootstock genotypes and grafting on bacterial communities colonizing the endosphere and rhizosphere. To compare the bacterial communities in control treatments (nongrafted and self-grafted plants) with the hybrid rootstocks used by farmers, we evaluated the effect of rootstocks on overall bacterial diversity and composition. These findings indicate the potential for using plant genotype to indirectly select bacterial taxa. In addition, we identify taxa responsive to each rootstock treatment, which may represent candidate taxa useful for biocontrol and in biofertilizers.
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Yu N, Cao L, Yuan L, Zhi X, Chen Y, Gan S, Chen L. Maintenance of grafting-induced epigenetic variations in the asexual progeny of Brassica oleracea and B. juncea chimera. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2018; 96:22-38. [PMID: 30086201 DOI: 10.1111/tpj.14058] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2018] [Revised: 07/23/2018] [Accepted: 07/31/2018] [Indexed: 05/19/2023]
Abstract
Grafting-induced variations have been observed in many plant species, but the heritability of variation in progeny is not well understood. In our study, adventitious shoots from the C cell lineage of shoot apical meristem (SAM) grafting chimera TCC (where the origin of the outmost, middle and innermost cell layers, respectively, of SAM is designated by 'T' for tuber mustard and 'C' for red cabbage) were induced and identified as r-CCC (r = regenerated). To investigate the maintenance of grafting variations during cell propagation and regeneration, different generations of asexual progeny (r-CCCn, n = generation) were established through successive regeneration of axillary shoots from r-CCC. The fourth generation of r-CCC (r-CCC4) was selected to perform whole genome bisulfite sequencing for comparative analysis of hetero-grafting-induced global methylation changes relative to r-s-CCC4 (s = self-grafting). Increased CHH methylation levels and proportions were observed in r-CCC4, with substantial changes occurring in the repeat elements. Small RNA sequencing revealed 1135 specific small interfering RNA (siRNA) tags that were typically expressed in r-CCC, r-CCC2 and r-CCC4. Notably, 65% of these specific siRNAs were associated with repeat elements, termed RE siRNAs. Subsequent analysis revealed that the CHH methylation of RE siRNA-overlapping regions was mainly hypermethylation in r-CCC4, indicating that they were responsible for directing and maintaining grafting-induced CHH methylation. Moreover, the expression of 13 differentially methylated genes (DMGs) correlated with the phenotypic variation, showing differential expression levels between r-CCC4 and r-s-CCC4. These DMGs were predominantly CG hypermethylated, their methylation modifications corresponded to the transcription of relative methyltransferase.
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Affiliation(s)
- Ningning Yu
- Department of Horticulture, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China
| | - Liwen Cao
- Department of Horticulture, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China
| | - Lu Yuan
- Department of Horticulture, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China
| | - Xiao Zhi
- Department of Horticulture, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China
| | - Yiqian Chen
- Department of Horticulture, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China
| | - Susheng Gan
- Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY, 14853, USA
| | - Liping Chen
- Department of Horticulture, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China
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Heer K, Ullrich KK, Hiss M, Liepelt S, Schulze Brüning R, Zhou J, Opgenoorth L, Rensing SA. Detection of somatic epigenetic variation in Norway spruce via targeted bisulfite sequencing. Ecol Evol 2018; 8:9672-9682. [PMID: 30386566 PMCID: PMC6202725 DOI: 10.1002/ece3.4374] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2018] [Revised: 06/18/2018] [Accepted: 06/22/2018] [Indexed: 12/24/2022] Open
Abstract
Epigenetic mechanisms represent a possible mechanism for achieving a rapid response of long-lived trees to changing environmental conditions. However, our knowledge on plant epigenetics is largely limited to a few model species. With increasing availability of genomic resources for many tree species, it is now possible to adopt approaches from model species that permit to obtain single-base pair resolution data on methylation at a reasonable cost. Here, we used targeted bisulfite sequencing (TBS) to study methylation patterns in the conifer species Norway spruce (Picea abies). To circumvent the challenge of disentangling epigenetic and genetic differences, we focused on four clone pairs, where clone members were growing in different climatic conditions for 24 years. We targeted >26.000 genes using TBS and determined the performance and reproducibility of this approach. We characterized gene body methylation and compared methylation patterns between environments. We found highly comparable capture efficiency and coverage across libraries. Methylation levels were relatively constant across gene bodies, with 21.3 ± 0.3%, 11.0 ± 0.4% and 1.3 ± 0.2% in the CG, CHG, and CHH context, respectively. The variance in methylation profiles did not reveal consistent changes between environments, yet we could identify 334 differentially methylated positions (DMPs) between environments. This supports that changes in methylation patterns are a possible pathway for a plant to respond to environmental change. After this successful application of TBS in Norway spruce, we are confident that this approach can contribute to broaden our knowledge of methylation patterns in natural tree populations.
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Affiliation(s)
- Katrin Heer
- Conservation BiologyFaculty of BiologyPhilipps University MarburgMarburgGermany
- Department of EcologyFaculty of BiologyPhilipps University MarburgMarburgGermany
| | - Kristian K. Ullrich
- Plant Cell BiologyFaculty of BiologyPhilipps University MarburgMarburgGermany
- Department of Evolutionary GeneticsMax Planck Institute for Evolutionary BiologyPloenGermany
| | - Manuel Hiss
- Plant Cell BiologyFaculty of BiologyPhilipps University MarburgMarburgGermany
| | - Sascha Liepelt
- Conservation BiologyFaculty of BiologyPhilipps University MarburgMarburgGermany
| | | | - Jiabin Zhou
- College of Life SciencesShaanxi Normal UniversityXi'anChina
- State Key Laboratory of Grassland Agro‐EcosystemsSchool of Life SciencesLanzhou UniversityLanzhouChina
| | - Lars Opgenoorth
- Department of EcologyFaculty of BiologyPhilipps University MarburgMarburgGermany
| | - Stefan A. Rensing
- Plant Cell BiologyFaculty of BiologyPhilipps University MarburgMarburgGermany
- BIOSS Biological Signaling StudiesUniversity of FreiburgFreiburgGermany
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Uthup TK, Karumamkandathil R, Ravindran M, Saha T. Heterografting induced DNA methylation polymorphisms in Hevea brasiliensis. PLANTA 2018; 248:579-589. [PMID: 29799082 DOI: 10.1007/s00425-018-2918-6] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/23/2018] [Accepted: 05/11/2018] [Indexed: 05/19/2023]
Abstract
Heterografting induced intraclonal epigenetic variations were detected among rubber plants. Interaction between genetically divergent root stock and scion tissues might have triggered these epigenetic changes which may eventually lead to intraclonal variability in rubber. DNA methylation in response to stress may be associated with the alteration in gene transcription leading to morphological changes in plants. Rubber tree is commercially propagated by bud grafting where the scion of a high yielding variety is grafted on to a genetically divergent root stock. Still, significant levels of intraclonal variations exist among them. Epigenetic changes associated with heterografting may be partly responsible for this conundrum. In the present study, an attempt was made to identify the impact of divergent root stock on the epigenome of scion in grafted rubber plants. Heterografts were developed by grafting eye buds from a single polyembryony derived seedling on to genetically divergent root stocks of unknown parentage. The plants were uniformly maintained and their DNA was subjected to MSAP analysis. Polymorphic DNA methylation bands corresponding to CG as well as the plant-specific CHG types of methylation were observed. Cloning of selected polymorphic regions and bisulfite sequencing confirmed the presence of methylation in the promoter and coding region of important genes including an LRR receptor kinase gene. Since divergent root stock is the major factor differentiating the grafted plants, the changes in DNA methylation patterns might have been triggered by the interaction between the two genetically different tissues of stock and scion. The study assumes importance in Hevea, because accumulation and maintenance of epigenetic changes in functional genes and promoters during subsequent cycles of vegetative propagation may contribute towards intraclonal variability eventually leading to altered phenotypes.
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Affiliation(s)
- Thomas K Uthup
- Advanced Centre for Molecular Biology and Biotechnology, Rubber Research Institute of India, Rubber Board P O, Kottayam, Kerala, 686009, India.
| | - Rekha Karumamkandathil
- Advanced Centre for Molecular Biology and Biotechnology, Rubber Research Institute of India, Rubber Board P O, Kottayam, Kerala, 686009, India
| | - Minimol Ravindran
- Advanced Centre for Molecular Biology and Biotechnology, Rubber Research Institute of India, Rubber Board P O, Kottayam, Kerala, 686009, India
| | - Thakurdas Saha
- Advanced Centre for Molecular Biology and Biotechnology, Rubber Research Institute of India, Rubber Board P O, Kottayam, Kerala, 686009, India
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Tamiru M, Hardcastle TJ, Lewsey MG. Regulation of genome-wide DNA methylation by mobile small RNAs. THE NEW PHYTOLOGIST 2018; 217:540-546. [PMID: 29105762 DOI: 10.1111/nph.14874] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2017] [Accepted: 09/20/2017] [Indexed: 05/20/2023]
Abstract
Contents Summary 540 I. Introduction 540 II. There are different types of sRNA mobility 541 III. Mechanisms of sRNA movement 541 IV. Long-distance, shoot-root, mobile siRNAs influence DNA methylation in recipient tissues 541 V. Classes of interactions between shoot-root mobile siRNAs and DNA methylation 542 VI. Loci targeted directly and indirectly by shoot-root mobile siRNAs are associated with different histone modifications 543 VII. Is mobile siRNA-regulated DNA methylation important in specific tissues or under specific conditions? 543 VIII. Mobile sRNAs can be used to modify plant traits 544 IX. Conclusions 544 Acknowledgements 544 References 544 SUMMARY: RNA-directed DNA methylation (RdDM) at cytosine residues regulates gene expression, silences transposable elements and influences genome stability. The mechanisms responsible for RdDM are guided to target loci by small RNAs (sRNAs) that can move within plants cell to cell and long distance. Here we discuss recent advances in the understanding of interactions between mobile sRNAs and DNA methylation. We describe the mechanisms of sRNA movement, the differences between known classes of mobile sRNA-DNA methylation interactions and the limits of current knowledge. Finally, we discuss potential applications of mobile sRNAs in modifying plant traits.
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Affiliation(s)
- Muluneh Tamiru
- Centre for AgriBioscience, Department of Animal, Plant and Soil Science, School of Life Science, La Trobe University, Bundoora, Vic., 3086, Australia
| | - Thomas J Hardcastle
- Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge, CB2 3EA, UK
| | - Mathew G Lewsey
- Centre for AgriBioscience, Department of Animal, Plant and Soil Science, School of Life Science, La Trobe University, Bundoora, Vic., 3086, Australia
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Tsutsui H, Notaguchi M. The Use of Grafting to Study Systemic Signaling in Plants. PLANT & CELL PHYSIOLOGY 2017; 58:1291-1301. [PMID: 28961994 DOI: 10.1093/pcp/pcx098] [Citation(s) in RCA: 57] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/27/2017] [Accepted: 07/10/2017] [Indexed: 05/03/2023]
Abstract
Grafting has long been an important technique in agriculture. Nowadays, grafting is a widely used technique also to study systemic long-distance signaling in plants. Plants respond to their surrounding environment, and at that time many aspects of their physiology are regulated systemically; these start from local input signals and are followed by the transmission of information to the rest of the plant. For example, soil nutrient conditions, light/photoperiod, and biotic and abiotic stresses affect plants heterogeneously, and plants perceive such information in specific plant tissues or organs. Such environmental cues are crucial determinants of plant growth and development, and plants drastically change their morphology and physiology to adapt to various events in their life. Hitherto, intensive studies have been conducted to understand systemic signaling in plants, and grafting techniques have permitted advances in this field. The breakthrough technique of micrografting in Arabidopsis thaliana was established in 2002 and led to the development of molecular genetic tools in this field. Thereafter, various phenomena of systemic signaling have been identified at the molecular level, including nutrient fixation, flowering, circadian clock and defense against pathogens. The significance of grafting is that it can clarify the transmission of the stimulus and molecules. At present, many micro- and macromolecules have been identified as mobile signals, which are transported through plant vascular tissues to co-ordinate their physiology and development. In this review, we introduce the various grafting techniques that have been developed, we report on the recent advances in the field of plant systemic signaling where grafting techniques have been applied and provide insights for the future.
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Affiliation(s)
- Hiroki Tsutsui
- Graduate School of Bioagricultural Sciences, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8601, Japan
| | - Michitaka Notaguchi
- Graduate School of Bioagricultural Sciences, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8601, Japan
- Japan Science and Technology Agency, PRESTO, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8601, Japan
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41
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Kyriacou MC, Rouphael Y, Colla G, Zrenner R, Schwarz D. Vegetable Grafting: The Implications of a Growing Agronomic Imperative for Vegetable Fruit Quality and Nutritive Value. FRONTIERS IN PLANT SCIENCE 2017; 8:741. [PMID: 28553298 PMCID: PMC5427113 DOI: 10.3389/fpls.2017.00741] [Citation(s) in RCA: 76] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/03/2017] [Accepted: 04/20/2017] [Indexed: 05/19/2023]
Abstract
Grafting has become an imperative for intensive vegetable production since chlorofluorocarbon-based soil fumigants were banned from use on grounds of environmental protection. Compelled by this development, research into rootstock-scion interaction has broadened the potential applications of grafting in the vegetable industry beyond aspects of soil phytopathology. Grafting has been increasingly tapped for cultivation under adverse environs posing abiotic and biotic stresses to vegetable crops, thus enabling expansion of commercial production onto otherwise under-exploited land. Vigorous rootstocks have been employed not only in the open field but also under protected cultivation where increase in productivity improves distribution of infrastructural and energy costs. Applications of grafting have expanded mainly in two families: the Cucurbitaceae and the Solanaceae, both of which comprise major vegetable crops. As the main drives behind the expansion of vegetable grafting have been the resistance to soilborne pathogens, tolerance to abiotic stresses and increase in yields, rootstock selection and breeding have accordingly conformed to the prevailing demand for improving productivity, arguably at the expense of fruit quality. It is, however, compelling to assess the qualitative implications of this growing agronomic practice for human nutrition. Problems of impaired vegetable fruit quality have not infrequently been associated with the practice of grafting. Accordingly, the aim of the current review is to reassess how the practice of grafting and the prevalence of particular types of commercial rootstocks influence vegetable fruit quality and, partly, storability. Physical, sensorial and bioactive aspects of quality are examined with respect to grafting for watermelon, melon, cucumber, tomato, eggplant, and pepper. The physiological mechanisms at play which mediate rootstock effects on scion performance are discussed in interpreting the implications of grafting for the configuration of vegetable fruit physicochemical quality and nutritive value.
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Affiliation(s)
- Marios C. Kyriacou
- Department of Vegetable Crops, Agricultural Research InstituteNicosia, Cyprus
| | - Youssef Rouphael
- Department of Agricultural Sciences, University of Naples Federico IINaples, Italy
| | - Giuseppe Colla
- Department of Agricultural and Forestry Sciences, University of TusciaViterbo, Italy
| | - Rita Zrenner
- Leibniz Institute of Vegetable and Ornamental CropsGroßbeeren, Germany
| | - Dietmar Schwarz
- Leibniz Institute of Vegetable and Ornamental CropsGroßbeeren, Germany
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Abstract
The plant vascular system plays a central role in coordinating physiological and developmental events through delivery of both essential nutrients and long-distance signaling agents. The enucleate phloem sieve tube system of the angiosperms contains a broad spectrum of RNA species. Grafting and transcriptomics studies have indicated that several thousand mRNAs move long distances from source organs to meristematic sink tissues. Ribonucleoprotein complexes play a pivotal role as stable RNA-delivery systems for systemic translocation of cargo RNA. In this review, we assess recent progress in the characterization of phloem and plasmodesmal transport as an integrated local and systemic communication network. We discuss the roles of phloem-mobile small RNAs in epigenetic events, including meristem development and genome stability, and the delivery of mRNAs to specific tissues in response to environmental inputs. A large body of evidence now supports a model in which phloem-mobile RNAs act as critical components of gene regulatory networks involved in plant growth, defense, and crop yield at the whole-plant level.
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Affiliation(s)
- Byung-Kook Ham
- Department of Plant Biology, College of Biological Sciences, University of California, Davis, California 95616; ,
| | - William J Lucas
- Department of Plant Biology, College of Biological Sciences, University of California, Davis, California 95616; ,
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43
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Wang J, Jiang L, Wu R. Plant grafting: how genetic exchange promotes vascular reconnection. THE NEW PHYTOLOGIST 2017; 214:56-65. [PMID: 27991666 DOI: 10.1111/nph.14383] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/26/2016] [Accepted: 11/13/2016] [Indexed: 05/17/2023]
Abstract
Grafting has been widely used to improve horticultural traits. It has also served increasingly as a tool to investigate the long-distance transport of molecules that is an essential part for key biological processes. Many studies have revealed the molecular mechanisms of graft-induced phenotypic variation in anatomy, morphology and production. Here, we review the phenomena and their underlying mechanisms by which macromolecules, including RNA, protein, and even DNA, are transported between scions and rootstocks via vascular tissues. We further propose a conceptual framework that characterizes and quantifies the driving mechanisms of scion-rootstock interactions toward vascular reconnection and regeneration.
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Affiliation(s)
- Jing Wang
- Center for Computational Biology, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China
| | - Libo Jiang
- Center for Computational Biology, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China
| | - Rongling Wu
- Center for Computational Biology, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China
- Center for Statistical Genetics, Pennsylvania State University, Hershey, PA, 17033, USA
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44
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Farinati S, Rasori A, Varotto S, Bonghi C. Rosaceae Fruit Development, Ripening and Post-harvest: An Epigenetic Perspective. FRONTIERS IN PLANT SCIENCE 2017; 8:1247. [PMID: 28769956 PMCID: PMC5511831 DOI: 10.3389/fpls.2017.01247] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2017] [Accepted: 06/30/2017] [Indexed: 05/06/2023]
Abstract
Rosaceae is a family with an extraordinary spectrum of fruit types, including fleshy peach, apple, and strawberry that provide unique contributions to a healthy diet for consumers, and represent an excellent model for studying fruit patterning and development. In recent years, many efforts have been made to unravel regulatory mechanism underlying the hormonal, transcriptomic, proteomic and metabolomic changes occurring during Rosaceae fruit development. More recently, several studies on fleshy (tomato) and dry (Arabidopsis) fruit model have contributed to a better understanding of epigenetic mechanisms underlying important heritable crop traits, such as ripening and stress response. In this context and summing up the results obtained so far, this review aims to collect the available information on epigenetic mechanisms that may provide an additional level in gene transcription regulation, thus influencing and driving the entire Rosaceae fruit developmental process. The whole body of information suggests that Rosaceae fruit could become also a model for studying the epigenetic basis of economically important phenotypes, allowing for their more efficient exploitation in plant breeding.
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Affiliation(s)
- Silvia Farinati
- Department of Agronomy, Food, Natural Resources, Animals and Environment, University of Padova AgripolisLegnaro, Italy
| | - Angela Rasori
- Department of Agronomy, Food, Natural Resources, Animals and Environment, University of Padova AgripolisLegnaro, Italy
| | - Serena Varotto
- Department of Agronomy, Food, Natural Resources, Animals and Environment, University of Padova AgripolisLegnaro, Italy
- Centro Interdipartimentale per la Ricerca in Viticoltura e Enologia, University of PadovaConegliano, Italy
| | - Claudio Bonghi
- Department of Agronomy, Food, Natural Resources, Animals and Environment, University of Padova AgripolisLegnaro, Italy
- Centro Interdipartimentale per la Ricerca in Viticoltura e Enologia, University of PadovaConegliano, Italy
- *Correspondence: Claudio Bonghi,
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45
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Wang J, Lin L, Liu L, Liang D, Xia H, Lv X, Liao M, Wang Z, Lai Y, Tang Y, Wang X, Ren W. Interspecies rootstocks affect cadmium accumulation in postgrafting generation plants of potential cadmium-hyperaccumulator Solanum photeinocarpum. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY 2016; 35:2845-2850. [PMID: 27123859 DOI: 10.1002/etc.3468] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2016] [Revised: 04/13/2016] [Accepted: 04/25/2016] [Indexed: 06/05/2023]
Abstract
Pot and field experiments were conducted to study the effects of interspecies rootstocks on cadmium (Cd) accumulation characteristics of the potential Cd-hyperaccumulator Solanum photeinocarpum postgrafting generation plants. Four treatments (ungrafted and S. photeinocarpum seedlings grafted on the rootstocks of eggplant, potato, and tomato) were utilized in the present study. In the 2 pot experiments, eggplant and potato reduced biomass of S. photeinocarpum postgrafting generation plants, whereas tomato increased shoot biomass compared with the control (ungrafted seedlings). Compared with ungrafted seedlings, tomato increased and eggplant decreased Cd contents in shoots of S. photeinocarpum postgrafting generation. Only tomato increased Cd extraction by shoots of S. photeinocarpum postgrafting generation compared with ungrafted seedlings. In the field experiment, only tomato increased shoot Cd content of S. photeinocarpum postgrafting generation by 8.31% and shoot Cd extraction by 9.30% compared with ungrafted seedlings. Therefore, use of tomato as rootstock could enhance the ability of S. photeinocarpum postgrafting generation plants to remediate Cd-contaminated soil. Environ Toxicol Chem 2016;35:2845-2850. © 2016 SETAC.
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Affiliation(s)
- Jin Wang
- College of Horticulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Lijin Lin
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Lei Liu
- College of Horticulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Dong Liang
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Hui Xia
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Xiulan Lv
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Ming'An Liao
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, China.
| | - Zhihui Wang
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Yunsong Lai
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Yi Tang
- College of Horticulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Xun Wang
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, China
| | - Wei Ren
- Maize Research Institute, Neijiang Academy of Agricultural Sciences, Neijiang, Sichuan, China
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46
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Cao L, Yu N, Li J, Qi Z, Wang D, Chen L. Heritability and Reversibility of DNA Methylation Induced by in vitro Grafting between Brassica juncea and B. oleracea. Sci Rep 2016; 6:27233. [PMID: 27257143 PMCID: PMC4891673 DOI: 10.1038/srep27233] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2015] [Accepted: 05/17/2016] [Indexed: 01/07/2023] Open
Abstract
Grafting between tuber mustard and red cabbage produced a chimeric shoot apical meristem (SAM) of TTC, consisting of Layers I and II from Tuber mustard and Layer III from red Cabbage. Phenotypic variations, which mainly showed in leaf shape and SAM, were observed in selfed progenies GSn (GS = grafting-selfing, n = generations) of TTC. Here the heritability of phenotypic variation and its association with DNA methylation changes in GSn were investigated. Variation in leaf shape was found to be stably inherited to GS5, but SAM variation reverted over generations. Subsequent measurement of DNA methylation in GS1 revealed 5.29–6.59% methylation changes compared with tuber mustard (TTT), and 31.58% of these changes were stably transmitted to GS5, but the remainder reverted to the original status over generations, suggesting grafting-induced DNA methylation changes could be both heritable and reversible. Sequence analysis of differentially methylated fragments (DMFs) revealed methylation mainly changed within transposons and exon regions, which further affected the expression of genes, including flowering time- and gibberellin response-related genes. Interestingly, DMFs could match differentially expressed siRNA of GS1, GS3 and GS5, indicating that grafting-induced DNA methylation could be directed by siRNA changes. These results suggest grafting-induced DNA methylation may contribute to phenotypic variations induced by grafting.
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Affiliation(s)
- Liwen Cao
- Department of Horticulture, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, P. R. China.,Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Hangzhou, 310058, P. R. China
| | - Ningning Yu
- Department of Horticulture, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, P. R. China.,Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Hangzhou, 310058, P. R. China
| | - Junxing Li
- Department of Horticulture, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, P. R. China.,Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Hangzhou, 310058, P. R. China
| | - Zhenyu Qi
- Department of Horticulture, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, P. R. China.,Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Hangzhou, 310058, P. R. China
| | - Dan Wang
- Department of Horticulture, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, P. R. China.,Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Hangzhou, 310058, P. R. China
| | - Liping Chen
- Department of Horticulture, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, P. R. China.,Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Hangzhou, 310058, P. R. China
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47
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Warschefsky EJ, Klein LL, Frank MH, Chitwood DH, Londo JP, von Wettberg EJB, Miller AJ. Rootstocks: Diversity, Domestication, and Impacts on Shoot Phenotypes. TRENDS IN PLANT SCIENCE 2016; 21:418-437. [PMID: 26698413 DOI: 10.1016/j.tplants.2015.11.008] [Citation(s) in RCA: 142] [Impact Index Per Article: 17.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2015] [Revised: 10/16/2015] [Accepted: 11/11/2015] [Indexed: 05/18/2023]
Abstract
Grafting is an ancient agricultural practice that joins the root system (rootstock) of one plant to the shoot (scion) of another. It is most commonly employed in woody perennial crops to indirectly manipulate scion phenotype. While recent research has focused on scions, here we investigate rootstocks, the lesser-known half of the perennial crop equation. We review natural grafting, grafting in agriculture, rootstock diversity and domestication, and developing areas of rootstock research, including molecular interactions and rootstock microbiomes. With growing interest in perennial crops as valuable components of sustainable agriculture, rootstocks provide one mechanism by which to improve and expand woody perennial cultivation in a range of environmental conditions.
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Affiliation(s)
- Emily J Warschefsky
- Florida International University, Department of Biological Sciences, 11200 Southwest 8th Street, Miami, FL 33199-2156, USA; Fairchild Tropical Botanic Garden, Kushlan Tropical Science Institute, 10901 Old Cutler Road, Coral Gables, FL 33156-4233, USA
| | - Laura L Klein
- Saint Louis University, Department of Biology, 3507 Laclede Avenue, St. Louis, MO 63103-2010, USA; Missouri Botanical Garden, 4344 Shaw Boulevard, St. Louis, MO 63110-2226, USA
| | - Margaret H Frank
- Donald Danforth Plant Science Center, 975 North Warson Road, St. Louis, MO 63132-2918, USA
| | - Daniel H Chitwood
- Donald Danforth Plant Science Center, 975 North Warson Road, St. Louis, MO 63132-2918, USA
| | - Jason P Londo
- United States Department of Agriculture, Agriculture Research Service: Grape Genetics Research Unit, 630 West North Street, Geneva, NY 14456-1371, USA
| | - Eric J B von Wettberg
- Florida International University, Department of Biological Sciences, 11200 Southwest 8th Street, Miami, FL 33199-2156, USA; Fairchild Tropical Botanic Garden, Kushlan Tropical Science Institute, 10901 Old Cutler Road, Coral Gables, FL 33156-4233, USA; Florida International University, International Center for Tropical Botany, 11200 Southwest 8th Street, Miami, FL 33199-2156, USA
| | - Allison J Miller
- Saint Louis University, Department of Biology, 3507 Laclede Avenue, St. Louis, MO 63103-2010, USA; Missouri Botanical Garden, 4344 Shaw Boulevard, St. Louis, MO 63110-2226, USA.
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48
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Zhang Z, Ham BK, Lucas WJ. Systemic silencing: Mobile sRNA stabilizes genomes. NATURE PLANTS 2016; 2:16020. [PMID: 27249354 DOI: 10.1038/nplants.2016.20] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Affiliation(s)
- Zhaoliang Zhang
- Department of Plant Biology, College of Biological Sciences, University of California, Davis, California 95616, USA
| | - Byung-Kook Ham
- Department of Plant Biology, College of Biological Sciences, University of California, Davis, California 95616, USA
| | - William J Lucas
- Department of Plant Biology, College of Biological Sciences, University of California, Davis, California 95616, USA
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49
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Lin L, Yang D, Wang X, Liao M, Wang Z, Lv X, Tang F, Liang D, Xia H, Lai Y, Tang Y. Effects of grafting on the cadmium accumulation characteristics of the potential Cd-hyperaccumulator Solanum photeinocarpum. ENVIRONMENTAL MONITORING AND ASSESSMENT 2016; 188:82. [PMID: 26739012 DOI: 10.1007/s10661-015-5084-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/16/2015] [Accepted: 12/22/2015] [Indexed: 06/05/2023]
Abstract
The effects of grafting on the cadmium (Cd) accumulation characteristics of the potential Cd-hyperaccumulator Solanum photeinocarpum were studied under Cd stress in our experiment. Four treatments were used in the experiment: ungrafted (UG), self-rooted grafting by the same S. photeinocarpum seedling (SG), self-rooted grafting by two different development stages of S. photeinocarpum seedlings (DG), and grafting on the rootstock of wild potato (PG). SG and DG decreased the root, scion stem, leaf, whole shoot, and whole plant biomasses compared with UG, but increased the rootstock stem biomass, while only PG increased the root and whole plant biomasses. SG and DG increased the Cd contents in the different organs of S. photeinocarpum compared with UG, while PG decreased the Cd content compared with UG. The Cd extraction by the whole plant of S. photeinocarpum was ranked as DG > SG > UG > PG. Additionally, the antioxidant enzyme activities in SG and DG were enhanced compared with UG, while that of PG was reduced compared with UG. The grafting increased the DNA methylation levels and changed the methylation patterns of S. photeinocarpum compared with UG. Therefore, SG and DG can increase the Cd accumulation in S. photeinocarpum, which can be used for the phytoremediation of Cd-contaminated soil.
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Affiliation(s)
- Lijin Lin
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China
| | - Daiyu Yang
- College of Horticulture, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China
| | - Xun Wang
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China
| | - Ming'an Liao
- College of Horticulture, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China.
| | - Zhihui Wang
- College of Horticulture, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China
| | - Xiulan Lv
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China
| | - Fuyi Tang
- College of Horticulture, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China
| | - Dong Liang
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China
| | - Hui Xia
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China
| | - Yunsong Lai
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China
| | - Yi Tang
- Institute of Pomology and Olericulture, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China
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50
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Abstract
RNA silencing at the transcriptional and posttranscriptional levels regulates endogenous gene expression, controls invading transposable elements (TEs), and protects the cell against viruses. Key components of the mechanism are small RNAs (sRNAs) of 21-24 nt that guide the silencing machinery to their nucleic acid targets in a nucleotide sequence-specific manner. Transcriptional gene silencing is associated with 24-nt sRNAs and RNA-directed DNA methylation (RdDM) at cytosine residues in three DNA sequence contexts (CG, CHG, and CHH). We previously demonstrated that 24-nt sRNAs are mobile from shoot to root in Arabidopsis thaliana and confirmed that they mediate DNA methylation at three sites in recipient cells. In this study, we extend this finding by demonstrating that RdDM of thousands of loci in root tissues is dependent upon mobile sRNAs from the shoot and that mobile sRNA-dependent DNA methylation occurs predominantly in non-CG contexts. Mobile sRNA-dependent non-CG methylation is largely dependent on the DOMAINS REARRANGED METHYLTRANSFERASES 1/2 (DRM1/DRM2) RdDM pathway but is independent of the CHROMOMETHYLASE (CMT)2/3 DNA methyltransferases. Specific superfamilies of TEs, including those typically found in gene-rich euchromatic regions, lose DNA methylation in a mutant lacking 22- to 24-nt sRNAs (dicer-like 2, 3, 4 triple mutant). Transcriptome analyses identified a small number of genes whose expression in roots is associated with mobile sRNAs and connected to DNA methylation directly or indirectly. Finally, we demonstrate that sRNAs from shoots of one accession move across a graft union and target DNA methylation de novo at normally unmethylated sites in the genomes of root cells from a different accession.
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