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Mendoza T, Trevino CL, Shrey DW, Lin JJ, Sen-Gupta I, Lopour BA. Optimizing automated detection of high frequency oscillations using visual markings does not improve SOZ localization. Clin Neurophysiol 2024; 164:30-39. [PMID: 38843758 DOI: 10.1016/j.clinph.2024.05.010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2024] [Revised: 02/28/2024] [Accepted: 05/20/2024] [Indexed: 07/15/2024]
Abstract
OBJECTIVE High frequency oscillations (HFOs) are a biomarker of the seizure onset zone (SOZ) and can be visually or automatically detected. In theory, one can optimize an automated algorithm's parameters to maximize SOZ localization accuracy; however, there is no consensus on whether or how this should be done. Therefore, we optimized an automated detector using visually identified HFOs and evaluated the impact on SOZ localization accuracy. METHODS We detected HFOs in intracranial EEG from 20 patients with refractory epilepsy from two centers using (1) unoptimized automated detection, (2) visual identification, and (3) automated detection optimized to match visually detected HFOs. RESULTS SOZ localization accuracy based on HFO rate was not significantly different between the three methods. Across patients, visually optimized detector settings varied, and no single set of settings produced universally accurate SOZ localization. Exploratory analysis suggests that, for many patients, detection settings exist that would improve SOZ localization. CONCLUSIONS SOZ localization accuracy was similar for all three methods, was not improved by visually optimizing detector settings, and may benefit from patient-specific parameter optimization. SIGNIFICANCE Visual HFO marking is laborious, and optimizing automated detection using visual markings does not improve localization accuracy. New patient-specific detector optimization methods are needed.
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Affiliation(s)
- Trisha Mendoza
- Department of Biomedical Engineering, University of California, Irvine, Irvine, CA, USA
| | - Casey L Trevino
- Department of Biomedical Engineering, University of California, Irvine, Irvine, CA, USA
| | - Daniel W Shrey
- Division of Neurology, Children's Hospital of Orange County, Orange, CA, USA; Department of Pediatrics, University of California, Irvine, Orange, CA, USA
| | - Jack J Lin
- UC Davis Comprehensive Epilepsy Program, Department of Neurology, Davis, CA, USA; UC Davis Center for Mind and Brain, Davis, CA, USA
| | - Indranil Sen-Gupta
- Comprehensive Epilepsy Program, Department of Neurology, University of California, Irvine, Irvine, CA, USA
| | - Beth A Lopour
- Department of Biomedical Engineering, University of California, Irvine, Irvine, CA, USA.
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Hebel JM, Lanz M, Malina T, Stodieck SRG, Le Van Quyen M. Effects of midazolam on high-frequency oscillations in amygdala and hippocampus of epilepsy patients. Epilepsia 2024; 65:e55-e60. [PMID: 38366848 DOI: 10.1111/epi.17916] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2023] [Revised: 01/11/2024] [Accepted: 02/01/2024] [Indexed: 02/18/2024]
Abstract
High-frequency oscillations (HFOs) are associated with normal brain function, but are also increasingly recognized as potential biomarkers of epileptogenic tissue. Considering the important role of interneuron activity in physiological HFO generation, we studied their modulation by midazolam (MDZ), an agonist of γ-aminobutyric acid type A (GABAA)-benzodiazepine receptors. Here, we analyzed 80 intracranial electrode contacts in amygdala and hippocampus of 13 patients with drug-refractory focal epilepsy who had received MDZ for seizure termination during presurgical monitoring. Ripples (80-250 Hz) and fast ripples (FRs; 250-400 Hz) were compared before and after seizures with MDZ application, and according to their origin either within or outside the individual seizure onset zone (SOZ). We found that MDZ distinctly suppressed all HFOs (ripples and FRs), whereas the reduction of ripples was significantly less pronounced inside the SOZ compared to non-SOZ contacts. The rate of FRs inside the SOZ was less affected, especially in hippocampal contacts. In a few cases, even a marked increase of FRs following MDZ administration was seen. Our results demonstrate, for the first time, a significant HFO modulation in amygdala and hippocampus by MDZ, thus giving insights into the malfunction of GABA-mediated inhibition within epileptogenic areas and its role in HFO generation.
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Affiliation(s)
- Jonas M Hebel
- Epilepsy-Center Berlin-Brandenburg, Department of Neurology and Experimental Neurology, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Berlin, Germany
| | - Michael Lanz
- Epilepsy-Center Hamburg, Protestant Hospital Alsterdorf, Hamburg, Germany
| | - Thomas Malina
- Epilepsy-Center Hamburg, Protestant Hospital Alsterdorf, Hamburg, Germany
| | | | - Michel Le Van Quyen
- Laboratoire d'Imagerie Biomédicale, Inserm U1146/Sorbonne Université UMCR2/UMR7371 CNRS, Paris, France
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3
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Stergiadis C, Kazis D, Klados MA. Epileptic tissue localization using graph-based networks in the high frequency oscillation range of intracranial electroencephalography. Seizure 2024; 117:28-35. [PMID: 38308906 DOI: 10.1016/j.seizure.2024.01.015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2023] [Revised: 01/08/2024] [Accepted: 01/24/2024] [Indexed: 02/05/2024] Open
Abstract
PURPOSE High frequency oscillations (HFOs) are an emerging biomarker of epilepsy. However, very few studies have investigated the functional connectivity of interictal iEEG signals in the frequency range of HFOs. Here, we study the corresponding functional networks using graph theory, and we assess their predictive value for automatic electrode classification in a cohort of 20 drug resistant patients. METHODS Coherence-based connectivity analysis was performed on the iEEG recordings, and six different local graph measures were computed in both sub-bands of the HFO frequency range (80-250 Hz and 250-500 Hz). Correlation analysis was implemented between the local graph measures and the ripple and fast ripple rates. Finally, the WEKA software was employed for training and testing different predictive models on the aforementioned local graph measures. RESULTS The ripple rate was significantly correlated with five out of six local graph measures in the functional network. For fast ripples, their rate was also significantly (but negatively) correlated with most of the local metrics. The results from WEKA showed that the Logistic Regression algorithm was able to classify highly HFO-contaminated electrodes with an accuracy of 82.5 % for ripples and 75.4 % for fast ripples. CONCLUSION Functional connectivity networks in the HFO band could represent an alternative to the direct use of distinct HFO events, while also providing important insights about hub epileptic areas that can represent possible surgical targets. Automatic electrode classification through FC-based classifiers can help bypass the burden of manual HFO annotation, providing at the same time similar amount of information about the epileptic tissue.
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Affiliation(s)
- Christos Stergiadis
- Department of Electronic Engineering, University of York, York, YO10 5DD, UK
| | - Dimitrios Kazis
- 3rd Neurological Department, Aristotle University of Thessaloniki Faculty of Health Sciences, Exohi, 57010 Thessaloniki, Greece
| | - Manousos A Klados
- Department of Psychology, University of York Europe Campus, CITY College 24, Proxenou Koromila Street, 546 22 Thessaloniki, Greece; Neuroscience Research Center (NEUREC), University of York Europe Campus, City College, Thessaloniki, Greece.
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Barrett GM, Vajram S, Shetler O, Aoun A, Hussaini SA. Open-Source Tools to Analyze Temporal and Spatial Properties of Local Field Potentials. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.03.14.584529. [PMID: 38559039 PMCID: PMC10979971 DOI: 10.1101/2024.03.14.584529] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/04/2024]
Abstract
Analysis of local field potentials (LFPs) is important for understanding how ensemble neurons function as a network in a specific region of the brain. Despite the availability of tools for analyzing LFP data, there are some missing features such as analysis of high frequency oscillations (HFOs) and spatial properties. In addition, accessibility of most tools is restricted due to closed source code and/or high costs. To overcome these issues, we have developed two freely available tools that make temporal and spatial analysis of LFP data easily accessible. The first tool, hfoGUI (High Frequency Oscillation Graphical User Interface), allows temporal analysis of LFP data and scoring of HFOs such as ripples and fast ripples which are important in understanding memory function and neurological disorders. To complement the temporal analysis tool, a second tool, SSM (Spatial Spectral Mapper), focuses on the spatial analysis of LFP data. The SSM tool maps the spectral power of LFPs as a function of subject's position in a given environment allowing investigation of spatial properties of LFP signal. Both hfoGUI and SSM are open-source tools that have unique features not offered by any currently available tools, and allow visualization and spatio-temporal analysis of LFP data.
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Affiliation(s)
- Geoffrey M. Barrett
- Taub Institute for Research on Alzheimer’s disease and the Aging Brain, Columbia University Irving Medical Center, New York, NY, 10032, USA
- Department of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, 10032, USA
| | - Srujan Vajram
- Taub Institute for Research on Alzheimer’s disease and the Aging Brain, Columbia University Irving Medical Center, New York, NY, 10032, USA
- Department of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, 10032, USA
| | - Oliver Shetler
- Taub Institute for Research on Alzheimer’s disease and the Aging Brain, Columbia University Irving Medical Center, New York, NY, 10032, USA
- Department of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, 10032, USA
| | - Andrew Aoun
- Taub Institute for Research on Alzheimer’s disease and the Aging Brain, Columbia University Irving Medical Center, New York, NY, 10032, USA
- Department of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, 10032, USA
| | - S. Abid Hussaini
- Taub Institute for Research on Alzheimer’s disease and the Aging Brain, Columbia University Irving Medical Center, New York, NY, 10032, USA
- Department of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, 10032, USA
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Cserpan D, Guidi G, Alessandri B, Fedele T, Rüegger A, Pisani F, Sarnthein J, Ramantani G. Scalp high-frequency oscillations differentiate neonates with seizures from healthy neonates. Epilepsia Open 2023; 8:1491-1502. [PMID: 37702021 PMCID: PMC10690668 DOI: 10.1002/epi4.12827] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2023] [Accepted: 09/02/2023] [Indexed: 09/14/2023] Open
Abstract
OBJECTIVE We aimed to investigate (1) whether an automated detector can capture scalp high-frequency oscillations (HFO) in neonates and (2) whether scalp HFO rates can differentiate neonates with seizures from healthy neonates. METHODS We considered 20 neonates with EEG-confirmed seizures and four healthy neonates. We applied a previously validated automated HFO detector to determine scalp HFO rates in quiet sleep. RESULTS Etiology in neonates with seizures included hypoxic-ischemic encephalopathy in 11 cases, structural vascular lesions in 6, and genetic causes in 3. The HFO rates were significantly higher in neonates with seizures (0.098 ± 0.091 HFO/min) than in healthy neonates (0.038 ± 0.025 HFO/min; P = 0.02) with a Hedge's g value of 0.68 indicating a medium effect size. The HFO rate of 0.1 HFO/min/ch yielded the highest Youden index in discriminating neonates with seizures from healthy neonates. In neonates with seizures, etiology, status epilepticus, EEG background activity, and seizure patterns did not significantly impact HFO rates. SIGNIFICANCE Neonatal scalp HFO can be detected automatically and differentiate neonates with seizures from healthy neonates. Our observations have significant implications for neuromonitoring in neonates. This is the first step in establishing neonatal HFO as a biomarker for neonatal seizures.
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Affiliation(s)
- Dorottya Cserpan
- Department of NeuropediatricsUniversity Children's HospitalZurichSwitzerland
| | - Greta Guidi
- Department of NeuropediatricsUniversity Children's HospitalZurichSwitzerland
| | - Beatrice Alessandri
- Department of NeuropediatricsUniversity Children's HospitalZurichSwitzerland
| | - Tommaso Fedele
- Department of NeuropediatricsUniversity Children's HospitalZurichSwitzerland
| | - Andrea Rüegger
- Department of NeuropediatricsUniversity Children's HospitalZurichSwitzerland
| | - Francesco Pisani
- Department of Human Neurosciences, Child Neurology and Psychiatry UnitSapienza University of RomeRomeItaly
| | - Johannes Sarnthein
- Department of NeurosurgeryUniversity Hospital ZurichZurichSwitzerland
- University of ZurichZurichSwitzerland
| | - Georgia Ramantani
- Department of NeuropediatricsUniversity Children's HospitalZurichSwitzerland
- University of ZurichZurichSwitzerland
- Children's Research CenterUniversity Children's HospitalZurichSwitzerland
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Ramantani G, Westover MB, Gliske S, Sarnthein J, Sarma S, Wang Y, Baud MO, Stacey WC, Conrad EC. Passive and active markers of cortical excitability in epilepsy. Epilepsia 2023; 64 Suppl 3:S25-S36. [PMID: 36897228 PMCID: PMC10512778 DOI: 10.1111/epi.17578] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2023] [Revised: 03/07/2023] [Accepted: 03/07/2023] [Indexed: 03/11/2023]
Abstract
Electroencephalography (EEG) has been the primary diagnostic tool in clinical epilepsy for nearly a century. Its review is performed using qualitative clinical methods that have changed little over time. However, the intersection of higher resolution digital EEG and analytical tools developed in the past decade invites a re-exploration of relevant methodology. In addition to the established spatial and temporal markers of spikes and high-frequency oscillations, novel markers involving advanced postprocessing and active probing of the interictal EEG are gaining ground. This review provides an overview of the EEG-based passive and active markers of cortical excitability in epilepsy and of the techniques developed to facilitate their identification. Several different emerging tools are discussed in the context of specific EEG applications and the barriers we must overcome to translate these tools into clinical practice.
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Affiliation(s)
- Georgia Ramantani
- Department of Neuropediatrics and Children's Research Center, University Children's Hospital Zurich, Zurich, Switzerland
- University of Zurich, Zurich, Switzerland
| | - M Brandon Westover
- Department of Neurology, Harvard Medical School, Beth Israel Deaconess Medical Center, Boston, Massachusetts, USA
- Department of Data Science, Massachusetts General Hospital McCance Center for Brain Health, Boston, Massachusetts, USA
- Research Affiliate Faculty, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA
- Research Affiliate Faculty, Broad Institute, Cambridge, Massachusetts, USA
| | - Stephen Gliske
- Department of Neurosurgery, University of Nebraska Medical Center, Omaha, Nebraska, USA
| | - Johannes Sarnthein
- Department of Neurosurgery, University Hospital of Zurich, University of Zurich, Zurich, Switzerland
| | - Sridevi Sarma
- Department of Biomedical Engineering, Institute for Computational Medicine, Johns Hopkins University, Baltimore, Maryland, USA
| | - Yujiang Wang
- Interdisciplinary Computing and Complex BioSystems, School of Computing Science, Newcastle University, Newcastle Upon Tyne, UK
| | - Maxime O Baud
- Sleep-Wake-Epilepsy Center, NeuroTec, Center for Experimental Neurology, Department of Neurology, Inselspital Bern, University Hospital, University of Bern, Bern, Switzerland
| | - William C Stacey
- Department of Neurology, BioInterfaces Institute, University of Michigan, Ann Arbor, Michigan, USA
- Department of Biomedical Engineering, BioInterfaces Institute, University of Michigan, Ann Arbor, Michigan, USA
- Division of Neurology, VA Ann Arbor Healthcare System, Ann Arbor, Michigan, USA
| | - Erin C Conrad
- Center for Neuroengineering and Therapeutics, University of Pennsylvania, Philadelphia, Pennsylvania, USA
- Department of Neurology, Penn Epilepsy Center, Hospital of the University of Pennsylvania, Philadelphia, Pennsylvania, USA
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7
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Ruelas M, Medina-Ceja L, Fuentes-Aguilar RQ. A scoping review of the relationship between alcohol, memory consolidation and ripple activity: An overview of common methodologies to analyse ripples. Eur J Neurosci 2023; 58:4137-4154. [PMID: 37827165 DOI: 10.1111/ejn.16168] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2022] [Revised: 08/27/2023] [Accepted: 09/26/2023] [Indexed: 10/14/2023]
Abstract
Alcohol abuse is not only responsible for 5.3% of the total deaths in the world but also has a substantial impact on neurological and memory disabilities throughout the population. One extensively studied brain area involved in cognitive functions is the hippocampus. Evidence in several rodent models has shown that ethanol produces cognitive impairment in hippocampal-dependent tasks and that the damage is varied according to the stage of development at which the rodent was exposed to ethanol and the dose. To the authors' knowledge, there is a biomarker for cognitive processes in the hippocampus that remains relatively understudied in association with memory impairment by alcohol administration. This biomarker is called sharp wave-ripples (SWRs) which are synchronous neuronal population events that are well known to be involved in memory consolidation. Methodologies for facilitated or automatic identification of ripples and their analysis have been reported for a wider bandwidth than SWRs. This review is focused on communicating the state of the art about the relationship between alcohol, memory consolidation and ripple activity, as well as the use of the common methodologies to identify SWRs automatically.
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Affiliation(s)
- Marina Ruelas
- School of Engineering and Sciences, Tecnológico de Monterrey, Zapopan, Jalisco, Mexico
| | - Laura Medina-Ceja
- Laboratory of Neurophysiology, Department of Cellular and Molecular Biology, CUCBA, University of Guadalajara, Zapopan, Jalisco, Mexico
| | - Rita Q Fuentes-Aguilar
- Institute of Advanced Materials for Sustainable Manufacturing, Tecnológico de Monterrey, Zapopan, Jalisco, Mexico
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8
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Pan R, Yang C, Li Z, Ren J, Duan Y. Magnetoencephalography-based approaches to epilepsy classification. Front Neurosci 2023; 17:1183391. [PMID: 37502686 PMCID: PMC10368885 DOI: 10.3389/fnins.2023.1183391] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2023] [Accepted: 06/12/2023] [Indexed: 07/29/2023] Open
Abstract
Epilepsy is a chronic central nervous system disorder characterized by recurrent seizures. Not only does epilepsy severely affect the daily life of the patient, but the risk of premature death in patients with epilepsy is three times higher than that of the normal population. Magnetoencephalography (MEG) is a non-invasive, high temporal and spatial resolution electrophysiological data that provides a valid basis for epilepsy diagnosis, and used in clinical practice to locate epileptic foci in patients with epilepsy. It has been shown that MEG helps to identify MRI-negative epilepsy, contributes to clinical decision-making in recurrent seizures after previous epilepsy surgery, that interictal MEG can provide additional localization information than scalp EEG, and complete excision of the stimulation area defined by the MEG has prognostic significance for postoperative seizure control. However, due to the complexity of the MEG signal, it is often difficult to identify subtle but critical changes in MEG through visual inspection, opening up an important area of research for biomedical engineers to investigate and implement intelligent algorithms for epilepsy recognition. At the same time, the use of manual markers requires significant time and labor costs, necessitating the development and use of computer-aided diagnosis (CAD) systems that use classifiers to automatically identify abnormal activity. In this review, we discuss in detail the results of applying various different feature extraction methods on MEG signals with different classifiers for epilepsy detection, subtype determination, and laterality classification. Finally, we also briefly look at the prospects of using MEG for epilepsy-assisted localization (spike detection, high-frequency oscillation detection) due to the unique advantages of MEG for functional area localization in epilepsy, and discuss the limitation of current research status and suggestions for future research. Overall, it is hoped that our review will facilitate the reader to quickly gain a general understanding of the problem of MEG-based epilepsy classification and provide ideas and directions for subsequent research.
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Affiliation(s)
- Ruoyao Pan
- Faculty of Environment and Life, Beijing University of Technology, Beijing, China
| | - Chunlan Yang
- Faculty of Environment and Life, Beijing University of Technology, Beijing, China
| | - Zhimei Li
- Department of Internal Neurology, Tiantan Hospital, Beijing, China
| | - Jiechuan Ren
- Department of Internal Neurology, Tiantan Hospital, Beijing, China
| | - Ying Duan
- Beijing Universal Medical Imaging Diagnostic Center, Beijing, China
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9
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Nahvi M, Ardeshir G, Ezoji M, Tafakhori A, Shafiee S, Babajani-Feremi A. An application of dynamical directed connectivity of ictal intracranial EEG recordings in seizure onset zone localization. J Neurosci Methods 2023; 386:109775. [PMID: 36596400 DOI: 10.1016/j.jneumeth.2022.109775] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2022] [Revised: 11/26/2022] [Accepted: 12/14/2022] [Indexed: 01/01/2023]
Abstract
BACKGROUND Identification of the seizure onset zone (SOZ) is a challenging task in epilepsy surgery. Patients with epilepsy have an altered brain network, allowing connectivity-based analyses to have a great potential in SOZ identification. We investigated a dynamical directed connectivity analysis utilizing ictal intracranial electroencephalographic (iEEG) recordings and proposed an algorithm for SOZ identification based on grouping iEEG contacts. NEW METHODS Granger Causality was used for directed connectivity analysis in this study. The intracranial contacts were grouped into visually detected contacts (VDCs), which were identified as SOZ by epileptologists, and non-resected contacts (NRCs). The intragroup and intergroup directed connectivity for VDCs and NRCs were calculated around seizure onset. We then proposed an algorithm for SOZ identification based on the cross-correlation of intragroup outflow and inflow of SOZ candidate contacts. RESULTS Our results revealed that the intragroup connectivity of VDCs (VDC→VDC) was significantly larger than the intragroup connectivity of NRCs (NRC→NRC) and the intergroup connectivity between NRCs and VDCs (NRC→VDC) around seizure onset. We found that the proposed algorithm had 90.1 % accuracy for SOZ identification in the seizure-free patients. COMPARISON WITH EXISTING METHODS The existing connectivity-based methods for SOZ identification often use either outflow or inflow. In this study, SOZ contacts were identified by integrating outflow and inflow based on the cross correlation between these two measures. CONCLUSIONS The proposed group-based dynamical connectivity analysis in this study can aid our understanding of underlying seizure network and may be used to assist in identifying the SOZ contacts before epilepsy surgery.
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Affiliation(s)
| | | | - Mehdi Ezoji
- Babol Noshirvani University of Technology, Babol, Iran
| | - Abbas Tafakhori
- Iranian Center of Neurological Research, Neuroscience Institute, Tehran University of Medical Sciences, Tehran, Iran
| | - Sajad Shafiee
- Department of Neurosurgery, Mazandaran University of Medical Sciences, Sari, Iran
| | - Abbas Babajani-Feremi
- Department of Neurology, Dell Medical School, University of Texas at Austin, Austin, TX, USA
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10
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Chou CH, Shen TW, Tung H, Hsieh PF, Kuo CE, Chen TM, Yang CW. Convolutional neural network-based fast seizure detection from video electroencephalograms. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2022.104380] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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11
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Zhao X, Peng X, Niu K, Li H, He L, Yang F, Wu T, Chen D, Zhang Q, Ouyang M, Guo J, Pan Y. A multi-head self-attention deep learning approach for detection and recommendation of neuromagnetic high frequency oscillations in epilepsy. Front Neuroinform 2022; 16:771965. [PMID: 36156983 PMCID: PMC9500293 DOI: 10.3389/fninf.2022.771965] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2021] [Accepted: 08/03/2022] [Indexed: 12/03/2022] Open
Abstract
Magnetoencephalography is a noninvasive neuromagnetic technology to record epileptic activities for the pre-operative localization of epileptogenic zones, which has received increasing attention in the diagnosis and surgery of epilepsy. As reported by recent studies, pathological high frequency oscillations (HFOs), when utilized as a biomarker to localize the epileptogenic zones, result in a significant reduction in seizure frequency, even seizure elimination in around 80% of cases. Thus, objective, rapid, and automatic detection and recommendation of HFOs are highly desirable for clinicians to alleviate the burden of reviewing a large amount of MEG data from a given patient. Despite the advantage, the performance of existing HFOs rarely satisfies the clinical requirement. Consequently, no HFOs have been successfully applied to real clinical applications so far. In this work, we propose a multi-head self-attention-based detector for recommendation, termed MSADR, to detect and recommend HFO signals. Taking advantage of the state-of-the-art multi-head self-attention mechanism in deep learning, the proposed MSADR achieves a more superior accuracy of 88.6% than peer machine learning models in both detection and recommendation tasks. In addition, the robustness of MSADR is also extensively assessed with various ablation tests, results of which further demonstrate the effectiveness and generalizability of the proposed approach.
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Affiliation(s)
- Xiangyu Zhao
- Information Technology Research Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing, China
- National Engineering Research Center for Information Technology in Agriculture, Beijing, China
| | - Xueping Peng
- Australian Artificial Intelligence Institute, Faculty of Engineering and Information Technology, University of Technology Sydney, Ultimo, NSW, Australia
- *Correspondence: Xueping Peng
| | - Ke Niu
- Computer School, Beijing Information Science and Technology University, Beijing, China
| | - Hailong Li
- Department of Radiology, Imaging Research Center, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, United States
| | - Lili He
- Department of Radiology, Imaging Research Center, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, United States
| | - Feng Yang
- Information Technology Research Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing, China
| | - Ting Wu
- Department of Radiology, Jiangsu Province Hospital of Chinese Medicine, Affiliated Hospital of Nanjing University of Chinese Medicine, Nanjing, China
- Department of Magnetoencephalography, Nanjing Brain Hospital, Affiliated to Nanjing Medical University, Nanjing, China
- Ting Wu
| | - Duo Chen
- School of Artificial Intelligence and Information Technology, Nanjing University of Chinese Medicine, Nanjing, China
| | - Qiusi Zhang
- Information Technology Research Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing, China
| | - Menglin Ouyang
- The Affiliated Hospital of Medical School, Ningbo University, Ningbo, China
| | - Jiayang Guo
- National Institute for Data Science in Health and Medicine, Xiamen University, Xiamen, China
- Department of Hematology, School of Medicine, Xiamen University, Xiamen, China
- Jiayang Guo
| | - Yijie Pan
- Department of Computer Science and Technology, Tsinghua University, Beijing, China
- Ningbo Institute of Information Technology Application, Chinese Academy of Sciences, Ningbo, China
- Yijie Pan
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12
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Burelo K, Sharifshazileh M, Indiveri G, Sarnthein J. Automatic Detection of High-Frequency Oscillations With Neuromorphic Spiking Neural Networks. Front Neurosci 2022; 16:861480. [PMID: 35720714 PMCID: PMC9205405 DOI: 10.3389/fnins.2022.861480] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2022] [Accepted: 04/19/2022] [Indexed: 11/13/2022] Open
Abstract
Interictal high-frequency oscillations (HFO) detected in electroencephalography recordings have been proposed as biomarkers of epileptogenesis, seizure propensity, disease severity, and treatment response. Automatic HFO detectors typically analyze the data offline using complex time-consuming algorithms, which limits their clinical application. Neuromorphic circuits offer the possibility of building compact and low-power processing systems that can analyze data on-line and in real time. In this review, we describe a fully automated detection pipeline for HFO that uses, for the first time, spiking neural networks and neuromorphic technology. We demonstrated that our HFO detection pipeline can be applied to recordings from different modalities (intracranial electroencephalography, electrocorticography, and scalp electroencephalography) and validated its operation in a custom-designed neuromorphic processor. Our HFO detection approach resulted in high accuracy and specificity in the prediction of seizure outcome in patients implanted with intracranial electroencephalography and electrocorticography, and in the prediction of epilepsy severity in patients recorded with scalp electroencephalography. Our research provides a further step toward the real-time detection of HFO using compact and low-power neuromorphic devices. The real-time detection of HFO in the operation room may improve the seizure outcome of epilepsy surgery, while the use of our neuromorphic processor for non-invasive therapy monitoring might allow for more effective medication strategies to achieve seizure control. Therefore, this work has the potential to improve the quality of life in patients with epilepsy by improving epilepsy diagnostics and treatment.
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Affiliation(s)
- Karla Burelo
- Klinik für Neurochirurgie, UniversitätsSpital Zürich, Universität Zürich, Zurich, Switzerland
- Institute of Neuroinformatics, University of Zurich and ETH Zurich, Zurich, Switzerland
| | | | - Giacomo Indiveri
- Institute of Neuroinformatics, University of Zurich and ETH Zurich, Zurich, Switzerland
- Zentrum für Neurowissenschaften Zurich, ETH und Universität Zürich, Zurich, Switzerland
| | - Johannes Sarnthein
- Klinik für Neurochirurgie, UniversitätsSpital Zürich, Universität Zürich, Zurich, Switzerland
- Zentrum für Neurowissenschaften Zurich, ETH und Universität Zürich, Zurich, Switzerland
- *Correspondence: Johannes Sarnthein,
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13
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O'Hara NB, Lee MH, Juhász C, Asano E, Jeong JW. Diffusion tractography predicts propagated high-frequency activity during epileptic spasms. Epilepsia 2022; 63:1787-1798. [PMID: 35388455 DOI: 10.1111/epi.17251] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2022] [Revised: 03/28/2022] [Accepted: 04/05/2022] [Indexed: 12/01/2022]
Abstract
OBJECTIVE Determine the structural networks that constrain propagation of ictal oscillations during epileptic spasm events, and compare observed propagation patterns across patients with successful or unsuccessful surgical outcomes. METHODS Subdural electrode recordings of 18 young patients (age 1-11 years) were analyzed during epileptic spasm events to determine ictal networks and quantify the amplitude and onset time of ictal oscillations across the cortical surface. Corresponding structural networks were generated with diffusion MRI tractography by seeding the cortical region associated with the earliest average oscillation onset time, and white matter pathways connecting active electrode regions within the ictal network were isolated. Properties of this structural network were used to predict oscillation onset times and amplitudes, and this relationship was compared across patients who did and did not achieve seizure freedom following resective surgery. RESULTS Onset propagation patterns were relatively consistent across each patients' spasm events. An electrode's average ictal oscillation onset latency was most significantly associated with the length of direct corticocortical tracts connecting to the area with the earliest average oscillation onset (p < .001, model R2 = 0.54). Moreover, patients demonstrating a faster propagation of ictal oscillation signals within the corticocortical network were more likely to have seizure recurrence following resective surgery (p = .039). Ictal oscillation amplitude was also associated with connecting tractography length and weighted fractional anisotropy (FA) measures along these pathways (p = .002/.030, model R2 = 0.31/0.25). Characteristics of analogous corticothalamic pathways did not show significant associations with ictal oscillation onset latency or amplitude. SIGNIFICANCE Spatiotemporal propagation patterns of high-frequency activity in epileptic spasms align with length and FA measures from onset-originating corticocortical pathways. Considering data in this individualized framework may help inform surgical decision making and expectations of surgical outcomes.
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Affiliation(s)
- Nolan B O'Hara
- Wayne State University (WSU) Translational Neuroscience Program.,Children's Hospital of Michigan Translational Imaging Laboratory
| | - Min-Hee Lee
- Children's Hospital of Michigan Translational Imaging Laboratory
| | - Csaba Juhász
- Wayne State University (WSU) Translational Neuroscience Program.,Children's Hospital of Michigan Translational Imaging Laboratory.,WSU Department of Pediatrics.,WSU Department of Neurology
| | - Eishi Asano
- Wayne State University (WSU) Translational Neuroscience Program.,Children's Hospital of Michigan Translational Imaging Laboratory.,WSU Department of Pediatrics.,WSU Department of Neurology
| | - Jeong-Won Jeong
- Wayne State University (WSU) Translational Neuroscience Program.,Children's Hospital of Michigan Translational Imaging Laboratory.,WSU Department of Pediatrics.,WSU Department of Neurology
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14
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Krikid F, Karfoul A, Chaibi S, Kachenoura A, Nica A, Kachouri A, Le Bouquin Jeannès R. Classification of High Frequency Oscillations in intracranial EEG signals based on coupled time-frequency and image-related features. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2021.103418] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
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15
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Burelo K, Ramantani G, Indiveri G, Sarnthein J. A neuromorphic spiking neural network detects epileptic high frequency oscillations in the scalp EEG. Sci Rep 2022; 12:1798. [PMID: 35110665 PMCID: PMC8810784 DOI: 10.1038/s41598-022-05883-8] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2021] [Accepted: 01/17/2022] [Indexed: 12/04/2022] Open
Abstract
Interictal High Frequency Oscillations (HFO) are measurable in scalp EEG. This development has aroused interest in investigating their potential as biomarkers of epileptogenesis, seizure propensity, disease severity, and treatment response. The demand for therapy monitoring in epilepsy has kindled interest in compact wearable electronic devices for long-term EEG recording. Spiking neural networks (SNN) have emerged as optimal architectures for embedding in compact low-power signal processing hardware. We analyzed 20 scalp EEG recordings from 11 pediatric focal lesional epilepsy patients. We designed a custom SNN to detect events of interest (EoI) in the 80–250 Hz ripple band and reject artifacts in the 500–900 Hz band. We identified the optimal SNN parameters to detect EoI and reject artifacts automatically. The occurrence of HFO thus detected was associated with active epilepsy with 80% accuracy. The HFO rate mirrored the decrease in seizure frequency in 8 patients (p = 0.0047). Overall, the HFO rate correlated with seizure frequency (rho = 0.90 CI [0.75 0.96], p < 0.0001, Spearman’s correlation). The fully automated SNN detected clinically relevant HFO in the scalp EEG. This study is a further step towards non-invasive epilepsy monitoring with a low-power wearable device.
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Affiliation(s)
- Karla Burelo
- Klinik für Neurochirurgie, Universitätsspital und Universität Zürich, 8091, Zurich, Switzerland.,Institute of Neuroinformatics, University of Zurich and ETH Zurich, Zurich, Switzerland
| | - Georgia Ramantani
- Neuropädiatrie, Universitäts-Kinderspital und Universität Zürich, Zurich, Switzerland.,Forschungszentrum für das Kind, Universitäts-Kinderspital Zürich, Zurich, Switzerland.,Zentrum für Neurowissenschaften Zürich, ETH und Universität Zürich, Zurich, Switzerland
| | - Giacomo Indiveri
- Institute of Neuroinformatics, University of Zurich and ETH Zurich, Zurich, Switzerland.,Zentrum für Neurowissenschaften Zürich, ETH und Universität Zürich, Zurich, Switzerland
| | - Johannes Sarnthein
- Klinik für Neurochirurgie, Universitätsspital und Universität Zürich, 8091, Zurich, Switzerland. .,Zentrum für Neurowissenschaften Zürich, ETH und Universität Zürich, Zurich, Switzerland.
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16
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Scalp HFO rates decrease after successful epilepsy surgery and are not impacted by the skull defect resulting from craniotomy. Sci Rep 2022; 12:1301. [PMID: 35079091 PMCID: PMC8789862 DOI: 10.1038/s41598-022-05373-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2021] [Accepted: 01/05/2022] [Indexed: 02/06/2023] Open
Abstract
Epilepsy surgery can achieve seizure freedom in selected pediatric candidates, but reliable postsurgical predictors of seizure freedom are missing. High frequency oscillations (HFO) in scalp EEG are a new and promising biomarker of treatment response. However, it is unclear if the skull defect resulting from craniotomy interferes with HFO detection in postsurgical recordings. We considered 14 children with focal lesional epilepsy who underwent presurgical evaluation, epilepsy surgery, and postsurgical follow-up of ≥ 1 year. We identified the nearest EEG electrodes to the skull defect in the postsurgical MRI. We applied a previously validated automated HFO detector to determine HFO rates in presurgical and postsurgical EEG. Overall, HFO rates showed a positive correlation with seizure frequency (p < 0.001). HFO rates in channels over the HFO area decreased following successful epilepsy surgery, irrespective of their proximity to the skull defect (p = 0.005). HFO rates in channels outside the HFO area but near the skull defect showed no increase following surgery (p = 0.091) and did not differ from their contralateral channels (p = 0.726). Our observations show that the skull defect does not interfere with postsurgical HFO detection. This supports the notion that scalp HFO can predict postsurgical seizure freedom and thus guide therapy management in focal lesional epilepsy.
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17
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Cserpan D, Rosch R, Pietro Lo Biundo S, Sarnthein J, Ramantani G. Variation of scalp EEG high frequency oscillation rate with sleep stage and time spent in sleep in patients with pediatric epilepsy. Clin Neurophysiol 2022; 135:117-125. [DOI: 10.1016/j.clinph.2021.12.013] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2021] [Revised: 11/07/2021] [Accepted: 12/14/2021] [Indexed: 12/15/2022]
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18
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Mokhothu TM, Tanaka KZ. Characterizing Hippocampal Oscillatory Signatures Underlying Seizures in Temporal Lobe Epilepsy. Front Behav Neurosci 2021; 15:785328. [PMID: 34899205 PMCID: PMC8656355 DOI: 10.3389/fnbeh.2021.785328] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2021] [Accepted: 10/29/2021] [Indexed: 01/01/2023] Open
Abstract
Temporal Lobe Epilepsy (TLE) is a neurological condition characterized by focal brain hyperexcitability, resulting in abnormal neuronal discharge and uncontrollable seizures. The hippocampus, with its inherently highly synchronized firing patterns and relatively high excitability, is prone to epileptic seizures, and it is usually the focus of TLE. Researchers have identified hippocampal high-frequency oscillations (HFOs) as a salient feature in people with TLE and animal models of this disease, arising before or at the onset of the epileptic event. To a certain extent, these pathological HFOs have served as a marker and a potential target for seizure attenuation using electrical or optogenetic interventions. However, many questions remain about whether we can reliably distinguish pathological from non-pathological HFOs and whether they can tell us about the development of the disease. While this would be an arduous task to perform in humans, animal models of TLE provide an excellent opportunity to study the characteristics of HFOs in predicting how epilepsy evolves. This minireview will (1) summarize what we know about the oscillatory disruption in TLE, (2) summarize knowledge about oscillatory changes in the latent period and their role in predicting seizures, and (3) propose future studies essential to uncovering potential treatments based on early detection of pathological HFOs.
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Affiliation(s)
- Thato Mary Mokhothu
- Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan
| | - Kazumasa Zen Tanaka
- Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan
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19
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Swarnalingam E, Jacobs J. The missing link: Epileptic brain ripples, is neuroinflammation the culprit? Clin Neurophysiol 2021; 133:154-156. [PMID: 34810103 DOI: 10.1016/j.clinph.2021.11.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2021] [Accepted: 11/01/2021] [Indexed: 11/26/2022]
Affiliation(s)
- Eroshini Swarnalingam
- Department of Pediatrics, Alberta Children's Hospital Research Institute & Hotchkiss Brain Institute, Cumming School of Medicine, University of Calgary, AB, Canada
| | - Julia Jacobs
- Department of Pediatrics, Alberta Children's Hospital Research Institute & Hotchkiss Brain Institute, Cumming School of Medicine, University of Calgary, AB, Canada.
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20
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Numata-Uematsu Y, Uematsu M, Sakuraba R, Iwasaki M, Osawa S, Jin K, Nakasato N, Kure S. The Onset of Interictal Spike-Related Ripples Facilitates Detection of the Epileptogenic Zone. Front Neurol 2021; 12:724417. [PMID: 34803874 PMCID: PMC8599368 DOI: 10.3389/fneur.2021.724417] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2021] [Accepted: 10/14/2021] [Indexed: 11/13/2022] Open
Abstract
Objective: Accurate estimation of the epileptogenic zone (EZ) is essential for favorable outcomes in epilepsy surgery. Conventional ictal electrocorticography (ECoG) onset is generally used to detect the EZ but is insufficient in achieving seizure-free outcomes. By contrast, high-frequency oscillations (HFOs) could be useful markers of the EZ. Hence, we aimed to detect the EZ using interictal spikes and investigated whether the onset area of interictal spike-related HFOs was within the EZ. Methods: The EZ is considered to be included in the resection area among patients with seizure-free outcomes after surgery. Using a complex demodulation technique, we developed a method to determine the onset channels of interictal spike-related ripples (HFOs of 80-200 Hz) and investigated whether they are within the resection area. Results: We retrospectively examined 12 serial patients who achieved seizure-free status after focal resection surgery. Using the method that we developed, we determined the onset channels of interictal spike-related ripples and found that for all 12 patients, they were among the resection channels. The onset frequencies of ripples were in the range of 80-150 Hz. However, the ictal onset channels (evaluated based on ictal ECoG patterns) and ripple onset channels coincided in only 3 of 12 patients. Conclusions: Determining the onset area of interictal spike-related ripples could facilitate EZ estimation. This simple method that utilizes interictal ECoG may aid in preoperative evaluation and improve epilepsy surgery outcomes.
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Affiliation(s)
| | - Mitsugu Uematsu
- Department of Pediatrics, Tohoku University School of Medicine, Sendai, Japan
| | - Rie Sakuraba
- Department of Epileptology, Tohoku University School of Medicine, Sendai, Japan
| | - Masaki Iwasaki
- Department of Neurosurgery, Tohoku University School of Medicine, Sendai, Japan.,Department of Neurosurgery, National Center Hospital of Neurology and Psychiatry, Tokyo, Japan
| | - Shinichiro Osawa
- Department of Neurosurgery, Tohoku University School of Medicine, Sendai, Japan
| | - Kazutaka Jin
- Department of Epileptology, Tohoku University School of Medicine, Sendai, Japan
| | - Nobukazu Nakasato
- Department of Epileptology, Tohoku University School of Medicine, Sendai, Japan
| | - Shigeo Kure
- Department of Pediatrics, Tohoku University School of Medicine, Sendai, Japan
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21
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Khuvis S, Hwang ST, Mehta AD. Intracranial EEG Biomarkers for Seizure Lateralization in Rapidly-Bisynchronous Epilepsy After Laser Corpus Callosotomy. Front Neurol 2021; 12:696492. [PMID: 34690909 PMCID: PMC8531267 DOI: 10.3389/fneur.2021.696492] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2021] [Accepted: 09/06/2021] [Indexed: 11/13/2022] Open
Abstract
Objective: It has been asserted that high-frequency analysis of intracranial EEG (iEEG) data may yield information useful in localizing epileptogenic foci. Methods: We tested whether proposed biomarkers could predict lateralization based on iEEG data collected prior to corpus callosotomy (CC) in three patients with bisynchronous epilepsy, whose seizures lateralized definitively post-CC. Lateralization data derived from algorithmically-computed ictal phase-locked high gamma (PLHG), high gamma amplitude (HGA), and low-frequency (filtered) line length (LFLL), as well as interictal high-frequency oscillation (HFO) and interictal epileptiform discharge (IED) rate metrics were compared against ground-truth lateralization from post-CC ictal iEEG. Results: Pre-CC unilateral IEDs were more frequent on the more-pathologic side in all subjects. HFO rate predicted lateralization in one subject, but was sensitive to detection threshold. On pre-CC data, no ictal metric showed better predictive power than any other. All post-corpus callosotomy seizures lateralized to the pathological hemisphere using PLHG, HGA, and LFLL metrics. Conclusions: While quantitative metrics of IED rate and ictal HGA, PHLG, and LFLL all accurately lateralize based on post-CC iEEG, only IED rate consistently did so based on pre-CC data. Significance: Quantitative analysis of IEDs may be useful in lateralizing seizure pathology. More work is needed to develop reliable techniques for high-frequency iEEG analysis.
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Affiliation(s)
- Simon Khuvis
- Department of Neurosurgery, Donald and Barbara Zucker School of Medicine at Hofstra/Northwell, Manhasset, NY, United States.,Feinstein Institutes for Medical Research, Northwell Health, Manhasset, NY, United States
| | - Sean T Hwang
- Department of Neurology, Donald and Barbara Zucker School of Medicine at Hofstra/Northwell, Manhasset, NY, United States
| | - Ashesh D Mehta
- Department of Neurosurgery, Donald and Barbara Zucker School of Medicine at Hofstra/Northwell, Manhasset, NY, United States.,Feinstein Institutes for Medical Research, Northwell Health, Manhasset, NY, United States
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22
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High frequency oscillations associate with neuroinflammation in low-grade epilepsy associated tumors. Clin Neurophysiol 2021; 133:165-174. [PMID: 34774442 DOI: 10.1016/j.clinph.2021.08.025] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2021] [Revised: 08/03/2021] [Accepted: 08/29/2021] [Indexed: 01/26/2023]
Abstract
OBJECTIVE High frequency oscillations (HFOs) in intraoperative electrocorticography (ioECoG) are thought to be generated by hyperexcitable neurons. Inflammation may promote neuronal hyperexcitability. We investigated the relation between HFOs and inflammation in tumor-related epilepsy. METHODS We identified HFOs (ripples 80-250 Hz, fast ripples 250-500 Hz) in the preresection ioECoG of 32 patients with low-grade tumors. Localization of recorded HFOs was classified based on magnetic resonance imaging reconstructions: in tumor, in resected non-tumorous area and outside the resected area. We tested if the following inflammatory markers in the tumor or peritumoral tissue were related to HFOs: activated microglia, cluster of differentiation 3 (CD3)-positive T-cells, interleukin 1-beta (IL1β), toll-like receptor 4 (TLR4) and high mobility group box 1 protein (HMGB1). RESULTS Tumors that generated ripples were infiltrated by more CD3-positive cells than tumors without ripples. Ripple rate outside the resected area was positively correlated with IL1β/TLR4/HMGB1 pathway activity in peritumoral area. These two areas did not directly overlap. CONCLUSIONS Ripple rates may be associated with inflammatory processes. SIGNIFICANCE Our findings support that ripple generation and spread might be associated with synchronized fast firing of hyperexcitable neurons due to certain inflammatory processes. This pilot study provides arguments for further investigations in HFOs and inflammation.
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23
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Wu M, Qin H, Wan X, Du Y. HFO Detection in Epilepsy: A Stacked Denoising Autoencoder and Sample Weight Adjusting Factors-Based Method. IEEE Trans Neural Syst Rehabil Eng 2021; 29:1965-1976. [PMID: 34529568 DOI: 10.1109/tnsre.2021.3113293] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
High-frequency oscillations (HFOs) recorded by the intracranial electroencephalography (iEEG) are the promising biomarkers of epileptogenic zones. Accurate detection of HFOs is the key to pre-operative assessment for epilepsy. Due to the subjective bias caused by manual features and the class imbalance between HFOs and false HFOs, it is difficult to obtain satisfactory detection performance by the existing methods. To solve these problems, we put forward a novel method to accurately detect HFOs based on the stacked denoising autoencoder (SDAE) and the ensemble classifier with sample weight adjusting factors. First, the adjustable threshold of Hilbert envelopes is proposed to isolate the events of interest (EoIs) from background activities. Then, the SDAE network is utilized to automatically extract features of EoIs in the time-frequency domain. Finally, the AdaBoost-based support vector machine ensemble classifier with sample weight adjusting factors is devised to separate HFOs from EoIs by using the extracted features. These adjusting factors are used to solve the class imbalance problem by adjusting sample weights when learning the base classifiers. Our HFO detection method is evaluated by using clinical iEEG data recorded from 20 patients with medically refractory epilepsy. The experimental results show that our detection method outperforms some existing methods in terms of sensitivity and false discovery rate. In addition, the HFOs detected by our method are effective for localizing seizure onset zones.
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24
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Migliorelli C, Romero S, Bachiller A, Aparicio J, Alonso JF, Mañanas MA, Antonio-Arce VS. Improving the ripple classification in focal pediatric epilepsy: identifying pathological high-frequency oscillations by Gaussian mixture model clustering. J Neural Eng 2021; 18. [PMID: 34384061 DOI: 10.1088/1741-2552/ac1d31] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2021] [Accepted: 08/12/2021] [Indexed: 11/11/2022]
Abstract
Objective. High-frequency oscillations (HFOs) have emerged as a promising clinical biomarker for presurgical evaluation in childhood epilepsy. HFOs are commonly classified in stereo-encephalography as ripples (80-200 Hz) and fast ripples (200-500 Hz). Ripples are less specific and not so directly associated with epileptogenic activity because of their physiological and pathological origin. The aim of this paper is to distinguish HFOs in the ripple band and to improve the evaluation of the epileptogenic zone (EZ).Approach. This study constitutes a novel modeling approach evaluated in ten patients from Sant Joan de Deu Pediatric Hospital (Barcelona, Spain), with clearly-defined seizure onset zones (SOZ) during presurgical evaluation. A subject-by-subject basis analysis is proposed: a probabilistic Gaussian mixture model (GMM) based on the combination of specific ripple features is applied for estimating physiological and pathological ripple subpopulations.Main Results. Clear pathological and physiological ripples are identified. Features differ considerably among patients showing within-subject variability, suggesting that individual models are more appropriate than a traditional whole-population approach. The difference in rates inside and outside the SOZ for pathological ripples is significantly higher than when considering all the ripples. These significant differences also appear in signal segments without epileptiform activity. Pathological ripple rates show a sharp decline from SOZ to non-SOZ contacts and a gradual decrease with distance.Significance. This novel individual GMM approach improves ripple classification and helps to refine the delineation of the EZ, as well as being appropriate to investigate the interaction of epileptogenic and propagation networks.
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Affiliation(s)
- Carolina Migliorelli
- CIBER de Bioingeniería, Biomateriales y Nanomedicina (CIBER-BBN), Madrid, Spain.,Universitat Politecnica de Catalunya, Department of Automatic Control (ESAII), Biomedical Engineering Research Centre (CREB), Barcelona, Spain.,Institut de recerca pediatrica Hospital Sant Joan de Déu, Barcelona, Spain
| | - Sergio Romero
- CIBER de Bioingeniería, Biomateriales y Nanomedicina (CIBER-BBN), Madrid, Spain.,Universitat Politecnica de Catalunya, Department of Automatic Control (ESAII), Biomedical Engineering Research Centre (CREB), Barcelona, Spain.,Institut de recerca pediatrica Hospital Sant Joan de Déu, Barcelona, Spain
| | - Alejandro Bachiller
- Universitat Politecnica de Catalunya, Department of Automatic Control (ESAII), Biomedical Engineering Research Centre (CREB), Barcelona, Spain.,Institut de recerca pediatrica Hospital Sant Joan de Déu, Barcelona, Spain
| | - Javier Aparicio
- Universitary Hospital Sant Joan de Déu, Epilepsy Unit. Department of Neuropediatrics (member of the European Reference Network for rare and complex epilepsies EpiCARE), Barcelona, Spain
| | - Joan F Alonso
- CIBER de Bioingeniería, Biomateriales y Nanomedicina (CIBER-BBN), Madrid, Spain.,Universitat Politecnica de Catalunya, Department of Automatic Control (ESAII), Biomedical Engineering Research Centre (CREB), Barcelona, Spain.,Institut de recerca pediatrica Hospital Sant Joan de Déu, Barcelona, Spain
| | - Miguel A Mañanas
- CIBER de Bioingeniería, Biomateriales y Nanomedicina (CIBER-BBN), Madrid, Spain.,Universitat Politecnica de Catalunya, Department of Automatic Control (ESAII), Biomedical Engineering Research Centre (CREB), Barcelona, Spain.,Institut de recerca pediatrica Hospital Sant Joan de Déu, Barcelona, Spain
| | - Victoria San Antonio-Arce
- Universitary Hospital Sant Joan de Déu, Epilepsy Unit. Department of Neuropediatrics (member of the European Reference Network for rare and complex epilepsies EpiCARE), Barcelona, Spain.,Freiburg Epilepsy Center, Medical Center-University of Freiburg, Faculty of Medicine (member of the European Reference Network for rare and complex epilepsies EpiCARE), Freiburg, Germany
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25
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Tost A, Migliorelli C, Bachiller A, Medina-Rivera I, Romero S, García-Cazorla Á, Mañanas MA. Choosing Strategies to Deal with Artifactual EEG Data in Children with Cognitive Impairment. ENTROPY (BASEL, SWITZERLAND) 2021; 23:1030. [PMID: 34441170 PMCID: PMC8392530 DOI: 10.3390/e23081030] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/15/2021] [Revised: 07/23/2021] [Accepted: 08/05/2021] [Indexed: 12/21/2022]
Abstract
Rett syndrome is a disease that involves acute cognitive impairment and, consequently, a complex and varied symptomatology. This study evaluates the EEG signals of twenty-nine patients and classify them according to the level of movement artifact. The main goal is to achieve an artifact rejection strategy that performs well in all signals, regardless of the artifact level. Two different methods have been studied: one based on the data distribution and the other based on the energy function, with entropy as its main component. The method based on the data distribution shows poor performance with signals containing high amplitude outliers. On the contrary, the method based on the energy function is more robust to outliers. As it does not depend on the data distribution, it is not affected by artifactual events. A double rejection strategy has been chosen, first on a motion signal (accelerometer or EEG low-pass filtered between 1 and 10 Hz) and then on the EEG signal. The results showed a higher performance when working combining both artifact rejection methods. The energy-based method, to isolate motion artifacts, and the data-distribution-based method, to eliminate the remaining lower amplitude artifacts were used. In conclusion, a new method that proves to be robust for all types of signals is designed.
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Affiliation(s)
- Ana Tost
- Biomedical Engineering Research Centre (CREB), Department of Automatic Control (ESAII), Universitat Politècnica de Catalunya (UPC), 08028 Barcelona, Spain; (C.M.); (A.B.); (S.R.); (M.A.M.)
| | - Carolina Migliorelli
- Biomedical Engineering Research Centre (CREB), Department of Automatic Control (ESAII), Universitat Politècnica de Catalunya (UPC), 08028 Barcelona, Spain; (C.M.); (A.B.); (S.R.); (M.A.M.)
- CIBER de Bioingeniería, Biomateriales y Nanomedicina (CIBER-BBN), 28029 Madrid, Spain
- Institut de Recerca Sant Joan de Déu, 08950 Barcelona, Spain; (I.M.-R.); (Á.G.-C.)
| | - Alejandro Bachiller
- Biomedical Engineering Research Centre (CREB), Department of Automatic Control (ESAII), Universitat Politècnica de Catalunya (UPC), 08028 Barcelona, Spain; (C.M.); (A.B.); (S.R.); (M.A.M.)
- CIBER de Bioingeniería, Biomateriales y Nanomedicina (CIBER-BBN), 28029 Madrid, Spain
- Institut de Recerca Sant Joan de Déu, 08950 Barcelona, Spain; (I.M.-R.); (Á.G.-C.)
| | - Inés Medina-Rivera
- Institut de Recerca Sant Joan de Déu, 08950 Barcelona, Spain; (I.M.-R.); (Á.G.-C.)
| | - Sergio Romero
- Biomedical Engineering Research Centre (CREB), Department of Automatic Control (ESAII), Universitat Politècnica de Catalunya (UPC), 08028 Barcelona, Spain; (C.M.); (A.B.); (S.R.); (M.A.M.)
- CIBER de Bioingeniería, Biomateriales y Nanomedicina (CIBER-BBN), 28029 Madrid, Spain
- Institut de Recerca Sant Joan de Déu, 08950 Barcelona, Spain; (I.M.-R.); (Á.G.-C.)
| | - Ángeles García-Cazorla
- Institut de Recerca Sant Joan de Déu, 08950 Barcelona, Spain; (I.M.-R.); (Á.G.-C.)
- Neurometabolic Unit and Synaptic Metabolism Lab, Neurology Department, Institut Pediàtric de Recerca, Hospital Sant Joan de Déu, metabERN and CIBERER-ISCIII, 08950 Barcelona, Spain
| | - Miguel A. Mañanas
- Biomedical Engineering Research Centre (CREB), Department of Automatic Control (ESAII), Universitat Politècnica de Catalunya (UPC), 08028 Barcelona, Spain; (C.M.); (A.B.); (S.R.); (M.A.M.)
- CIBER de Bioingeniería, Biomateriales y Nanomedicina (CIBER-BBN), 28029 Madrid, Spain
- Institut de Recerca Sant Joan de Déu, 08950 Barcelona, Spain; (I.M.-R.); (Á.G.-C.)
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26
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Wang Y, Yuan L, Zhang S, Liang S, Yu X, Liu T, Yang X, Liang S. Fast Ripples as a Biomarker of Epileptogenic Tuber in Tuberous Sclerosis Complex Patients Using Stereo-Electroencephalograph. Front Hum Neurosci 2021; 15:680295. [PMID: 34220475 PMCID: PMC8242347 DOI: 10.3389/fnhum.2021.680295] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2021] [Accepted: 05/07/2021] [Indexed: 11/13/2022] Open
Abstract
Objectives: To evaluate the value of fast ripples (FRs) (200–500 Hz) recorded with stereo-electroencephalograph (SEEG) in the localization of epileptogenic tubers in patients with tuberous sclerosis complex (TSC). Methods: Seventeen TSC patients who underwent preoperative SEEG examination and resective epilepsy surgery were retrospectively enrolled. They were divided into two groups according to the seizure control at 1-year postoperative follow-up. The occurrence frequencies of FRs were automatically counted, and the FR rate was calculated. The high FR rate was defined as FR rate ≧0.5. According to different positions, the contacts’ locations were divided into three groups: inner of the tubers, the junction region of the tubers, and out of the tubers. The influence factors of postoperative seizure freedom were also analyzed. Results: Twelve patients reached postoperative seizure freedom at 1-year follow-up. In total, FRs were found in 24.2% of the contacts and 67.1% of the tubers in all assessed patients. There were 47 high FR rate contacts localized in the junction region of the tubers, which was 62.7% of the 75 high FR rate contacts in total and was 8.4% of the total 561 contacts localized in the junction region of the tubers. Total removal of epileptogenic tubers and total resection of the high FR rate tubers/contacts were associated with postoperative seizure freedom (P < 0.05). Conclusion: FRs could be extensively detected in TSC patients using SEEG, and high FR rate contacts were mostly localized in the junction region of the epileptogenic tuber, which could aid in the localization of epileptogenic tubers.
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Affiliation(s)
- Yangshuo Wang
- Department of Functional Neurosurgery, Beijing Children's Hospital, Capital Medical University, Beijing, China
| | - Liu Yuan
- Department of Functional Neurosurgery, Beijing Children's Hospital, Capital Medical University, Beijing, China
| | - Shaohui Zhang
- Department of Functional Neurosurgery, Beijing Children's Hospital, Capital Medical University, Beijing, China.,Department of Neurosurgery, Fourth Medical Center, General Hospital of PLA, Beijing, China
| | - Shuangshuang Liang
- Department of Neurosurgery, Fourth Medical Center, General Hospital of PLA, Beijing, China
| | - Xiaoman Yu
- Department of Neurosurgery, Fourth Medical Center, General Hospital of PLA, Beijing, China
| | - Tinghong Liu
- Department of Functional Neurosurgery, Beijing Children's Hospital, Capital Medical University, Beijing, China
| | | | - Shuli Liang
- Department of Functional Neurosurgery, Beijing Children's Hospital, Capital Medical University, Beijing, China
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27
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Burelo K, Sharifshazileh M, Krayenbühl N, Ramantani G, Indiveri G, Sarnthein J. A spiking neural network (SNN) for detecting high frequency oscillations (HFOs) in the intraoperative ECoG. Sci Rep 2021; 11:6719. [PMID: 33762590 PMCID: PMC7990937 DOI: 10.1038/s41598-021-85827-w] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2020] [Accepted: 03/05/2021] [Indexed: 12/17/2022] Open
Abstract
To achieve seizure freedom, epilepsy surgery requires the complete resection of the epileptogenic brain tissue. In intraoperative electrocorticography (ECoG) recordings, high frequency oscillations (HFOs) generated by epileptogenic tissue can be used to tailor the resection margin. However, automatic detection of HFOs in real-time remains an open challenge. Here we present a spiking neural network (SNN) for automatic HFO detection that is optimally suited for neuromorphic hardware implementation. We trained the SNN to detect HFO signals measured from intraoperative ECoG on-line, using an independently labeled dataset (58 min, 16 recordings). We targeted the detection of HFOs in the fast ripple frequency range (250-500 Hz) and compared the network results with the labeled HFO data. We endowed the SNN with a novel artifact rejection mechanism to suppress sharp transients and demonstrate its effectiveness on the ECoG dataset. The HFO rates (median 6.6 HFO/min in pre-resection recordings) detected by this SNN are comparable to those published in the dataset (Spearman's [Formula: see text] = 0.81). The postsurgical seizure outcome was "predicted" with 100% (CI [63 100%]) accuracy for all 8 patients. These results provide a further step towards the construction of a real-time portable battery-operated HFO detection system that can be used during epilepsy surgery to guide the resection of the epileptogenic zone.
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Affiliation(s)
- Karla Burelo
- Institute of Neuroinformatics, University of Zurich and ETH Zurich, 8057, Zurich, Switzerland
- Department of Neurosurgery, University Hospital Zurich, University of Zurich, 8091, Zurich, Switzerland
| | - Mohammadali Sharifshazileh
- Institute of Neuroinformatics, University of Zurich and ETH Zurich, 8057, Zurich, Switzerland
- Department of Neurosurgery, University Hospital Zurich, University of Zurich, 8091, Zurich, Switzerland
| | - Niklaus Krayenbühl
- University Children's Hospital, University of Zurich, 8032, Zurich, Switzerland
- Klinisches Neurozentrum Zürich, University Hospital Zurich, University of Zurich, 8006 Zurich, Switzerland
| | - Georgia Ramantani
- University Children's Hospital, University of Zurich, 8032, Zurich, Switzerland
- Klinisches Neurozentrum Zürich, University Hospital Zurich, University of Zurich, 8006 Zurich, Switzerland
- Neuroscience Center Zurich, ETH Zurich, 8092, Zurich, Switzerland
| | - Giacomo Indiveri
- Institute of Neuroinformatics, University of Zurich and ETH Zurich, 8057, Zurich, Switzerland
- Neuroscience Center Zurich, ETH Zurich, 8092, Zurich, Switzerland
| | - Johannes Sarnthein
- Department of Neurosurgery, University Hospital Zurich, University of Zurich, 8091, Zurich, Switzerland.
- Klinisches Neurozentrum Zürich, University Hospital Zurich, University of Zurich, 8006 Zurich, Switzerland.
- Neuroscience Center Zurich, ETH Zurich, 8092, Zurich, Switzerland.
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28
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Waterstraat G, Körber R, Storm JH, Curio G. Noninvasive neuromagnetic single-trial analysis of human neocortical population spikes. Proc Natl Acad Sci U S A 2021; 118:e2017401118. [PMID: 33707209 PMCID: PMC7980398 DOI: 10.1073/pnas.2017401118] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022] Open
Abstract
Neuronal spiking is commonly recorded by invasive sharp microelectrodes, whereas standard noninvasive macroapproaches (e.g., electroencephalography [EEG] and magnetoencephalography [MEG]) predominantly represent mass postsynaptic potentials. A notable exception are low-amplitude high-frequency (∼600 Hz) somatosensory EEG/MEG responses that can represent population spikes when averaged over hundreds of trials to raise the signal-to-noise ratio. Here, a recent leap in MEG technology-featuring a factor 10 reduction in white noise level compared with standard systems-is leveraged to establish an effective single-trial portrayal of evoked cortical population spike bursts in healthy human subjects. This time-resolved approach proved instrumental in revealing a significant trial-to-trial variability of burst amplitudes as well as time-correlated (∼10 s) fluctuations of burst response latencies. Thus, ultralow-noise MEG enables noninvasive single-trial analyses of human cortical population spikes concurrent with low-frequency mass postsynaptic activity and thereby could comprehensively characterize cortical processing, potentially also in diseases not amenable to invasive microelectrode recordings.
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Affiliation(s)
- Gunnar Waterstraat
- Neurophysics Group, Department of Neurology, Charité-Universitätsmedizin Berlin, 12203 Berlin, Germany;
| | - Rainer Körber
- Department of Biosignals, Physikalisch-Technische Bundesanstalt, 10587 Berlin, Germany
| | - Jan-Hendrik Storm
- Department of Biosignals, Physikalisch-Technische Bundesanstalt, 10587 Berlin, Germany
| | - Gabriel Curio
- Neurophysics Group, Department of Neurology, Charité-Universitätsmedizin Berlin, 12203 Berlin, Germany
- Bernstein Center for Computational Neuroscience, 10115 Berlin, Germany
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29
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McCrimmon CM, Riba A, Garner C, Maser AL, Phillips DJ, Steenari M, Shrey DW, Lopour BA. Automated detection of ripple oscillations in long-term scalp EEG from patients with infantile spasms. J Neural Eng 2021; 18. [PMID: 33217752 DOI: 10.1088/1741-2552/abcc7e] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2020] [Accepted: 11/20/2020] [Indexed: 11/11/2022]
Abstract
Objective.Scalp high-frequency oscillations (HFOs) are a promising biomarker of epileptogenicity in infantile spasms (IS) and many other epilepsy syndromes, but prior studies have relied on visual analysis of short segments of data due to the prevalence of artifacts in EEG. Here we set out to robustly characterize the rate and spatial distribution of HFOs in large datasets from IS subjects using fully automated HFO detection techniques.Approach.We prospectively collected long-term scalp EEG data from 12 subjects with IS and 18 healthy controls. For patients with IS, recording began prior to diagnosis and continued through initiation of treatment with adrenocorticotropic hormone (ACTH). The median analyzable EEG duration was 18.2 h for controls and 84.5 h for IS subjects (∼1300 h total). Ripples (80-250 Hz) were detected in all EEG data using an automated algorithm.Main results.HFO rates were substantially higher in patients with IS compared to controls. In IS patients, HFO rates were higher during sleep compared to wakefulness (median 5.5 min-1and 2.9 min-1, respectively;p = 0.002); controls did not exhibit a difference in HFO rate between sleep and wakefulness (median 0.98 min-1and 0.82 min-1, respectively). Spatially, IS patients exhibited significantly higher rates of HFOs in the posterior parasaggital region and significantly lower HFO rates in frontal channels, and this difference was more pronounced during sleep. In IS subjects, ACTH therapy significantly decreased the rate of HFOs.Significance.Here we provide a detailed characterization of the spatial distribution and rates of HFOs associated with IS, which may have relevance for diagnosis and assessment of treatment response. We also demonstrate that our fully automated algorithm can be used to detect HFOs in long-term scalp EEG with sufficient accuracy to clearly discriminate healthy subjects from those with IS.
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Affiliation(s)
- Colin M McCrimmon
- Medical Scientist Training Program, University of California, Irvine, CA 92617, United States of America.,Department Neurology, University of California, Los Angeles, CA 90095, United States of America
| | - Aliza Riba
- Division Neurology, Children's Hospital of Orange County, Orange, CA 92868, United States of America
| | - Cristal Garner
- Division Neurology, Children's Hospital of Orange County, Orange, CA 92868, United States of America
| | - Amy L Maser
- Department Psychology, Children's Hospital of Orange County, Orange, CA 92868, United States of America
| | - Donald J Phillips
- Division Neurology, Children's Hospital of Orange County, Orange, CA 92868, United States of America.,Department Pediatrics, University of California, Irvine, Irvine, CA 92617, United States of America
| | - Maija Steenari
- Division Neurology, Children's Hospital of Orange County, Orange, CA 92868, United States of America.,Department Pediatrics, University of California, Irvine, Irvine, CA 92617, United States of America
| | - Daniel W Shrey
- Division Neurology, Children's Hospital of Orange County, Orange, CA 92868, United States of America.,Department Pediatrics, University of California, Irvine, Irvine, CA 92617, United States of America
| | - Beth A Lopour
- Department Biomedical Engineering, University of California, Irvine, Irvine, CA 92617, United States of America
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30
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van Klink NEC, Zweiphenning WJEM, Ferrier CH, Gosselaar PH, Miller KJ, Aronica E, Braun KPJ, Zijlmans M. Can we use intraoperative high-frequency oscillations to guide tumor-related epilepsy surgery? Epilepsia 2021; 62:997-1004. [PMID: 33617688 PMCID: PMC8248094 DOI: 10.1111/epi.16845] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2020] [Revised: 01/27/2021] [Accepted: 01/27/2021] [Indexed: 02/05/2023]
Abstract
Objective In people with low‐grade intrinsic brain tumors, an epileptic focus is often located close to the lesion. High‐frequency oscillations (HFOs) in electrocorticography (ECoG) might help to delineate this focus. We investigated the relationship between HFOs and low‐grade brain tumors and their potential value for tumor‐related epilepsy surgery. Methods We analyzed pre‐ and postresection intraoperative ECoG in 41 patients with refractory epilepsy and a low‐grade lesion. Electrodes were designated as overlying the tumor, adjacent resected tissue (peritumoral), or outside the resection bed using magnetic resonance imaging (MRI) and intraoperative photographs. We then used a semiautomated approach to detect HFOs as either ripples (80–250 Hz) or fast ripples (250–500 Hz). Results The rate of fast ripples was higher in electrodes covering tumor and peritumoral tissue than outside the resection (p = .04). Mesiotemporal tumors showed more ripples (p = .002), but not more fast ripples (p = .07), than superficial tumors. Rates of fast ripples were higher in glioma and extraventricular neurocytoma than in ganglioglioma or dysembryoplastic neuroepithelial tumor (DNET). The rate of ripples and fast ripples in postresection ECoG was not higher in patients with residual tumor tissue on MRI than those without. The rate of ripples in postresection ECoG was higher in patients with good than bad seizure outcome (p = .03). Fast ripples outside the resection and in post‐ECoG seem related to seizure recurrence. Significance Fast ripples in intraoperative ECoG can be used to help guide resection in tumor‐related epilepsy surgery. Preresection fast ripples occur predominantly in epileptogenic tumor and peritumoral tissue. Fast ripple rates are higher in glioma and extraventricular neurocytoma than in ganglioglioma and DNET.
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Affiliation(s)
- Nicole E C van Klink
- Department of Neurology and Neurosurgery, University Medical Center Utrecht Brain Center, Utrecht, the Netherlands
| | - Willemiek J E M Zweiphenning
- Department of Neurology and Neurosurgery, University Medical Center Utrecht Brain Center, Utrecht, the Netherlands
| | - Cyrille H Ferrier
- Department of Neurology and Neurosurgery, University Medical Center Utrecht Brain Center, Utrecht, the Netherlands
| | - Peter H Gosselaar
- Department of Neurology and Neurosurgery, University Medical Center Utrecht Brain Center, Utrecht, the Netherlands
| | - Kai J Miller
- Department of Neurology and Neurosurgery, University Medical Center Utrecht Brain Center, Utrecht, the Netherlands.,Department of Neurosurgery, Mayo Clinic, Rochester, Minnesota, USA
| | - Eleonora Aronica
- Department of (Neuro)Pathology, Amsterdam Neuroscience, Amsterdam University Medical Center, Amsterdam, the Netherlands.,Epilepsy Institutes of the Netherlands Foundation (SEIN), Heemstede, the Netherlands
| | - Kees P J Braun
- Department of Neurology and Neurosurgery, University Medical Center Utrecht Brain Center, Utrecht, the Netherlands
| | - Maeike Zijlmans
- Department of Neurology and Neurosurgery, University Medical Center Utrecht Brain Center, Utrecht, the Netherlands.,Epilepsy Institutes of the Netherlands Foundation (SEIN), Heemstede, the Netherlands
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31
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Guo J, Li H, Sun X, Qi L, Qiao H, Pan Y, Xiang J, Ji R. Detecting High Frequency Oscillations for Stereoelectroencephalography in Epilepsy via Hypergraph Learning. IEEE Trans Neural Syst Rehabil Eng 2021; 29:587-596. [PMID: 33534708 DOI: 10.1109/tnsre.2021.3056685] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Successful epilepsy surgeries depend highly on pre-operative localization of epileptogenic zones. Stereoelectroencephalography (SEEG) records interictal and ictal activities of the epilepsy in order to precisely find and localize epileptogenic zones in clinical practice. While it is difficult to find distinct ictal onset patterns generated the seizure onset zone from SEEG recordings in a confined region, high frequency oscillations are commonly considered as putative biomarkers for the identification of epileptogenic zones. Therefore, automatic and accurate detection of high frequency oscillations in SEEG signals is crucial for timely clinical evaluation. This work formulates the detection of high frequency oscillations as a signal segment classification problem and develops a hypergraph-based detector to automatically detect high frequency oscillations such that human experts can visually review SEEG signals. We evaluated our method on 4,000 signal segments from clinical SEEG recordings that contain both ictal and interictal data obtained from 19 patients who suffer from refractory focal epilepsy. The experimental results demonstrate the effectiveness of the proposed detector that can successfully localize interictal high frequency oscillations and outperforms multiple peer machine learning methods. In particular, the proposed detector achieved 90.7% in accuracy, 80.9% in sensitivity, and 96.9% in specificity.
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32
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Thomschewski A, Gerner N, Langthaler PB, Trinka E, Bathke AC, Fell J, Höller Y. Automatic vs. Manual Detection of High Frequency Oscillations in Intracranial Recordings From the Human Temporal Lobe. Front Neurol 2020; 11:563577. [PMID: 33192999 PMCID: PMC7604344 DOI: 10.3389/fneur.2020.563577] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2020] [Accepted: 08/26/2020] [Indexed: 12/14/2022] Open
Abstract
Background: High frequency oscillations (HFOs) have attracted great interest among neuroscientists and epileptologists in recent years. Not only has their occurrence been linked to epileptogenesis, but also to physiologic processes, such as memory consolidation. There are at least two big challenges for HFO research. First, detection, when performed manually, is time consuming and prone to rater biases, but when performed automatically, it is biased by artifacts mimicking HFOs. Second, distinguishing physiologic from pathologic HFOs in patients with epilepsy is problematic. Here we automatically and manually detected HFOs in intracranial EEGs (iEEG) of patients with epilepsy, recorded during a visual memory task in order to assess the feasibility of the different detection approaches to identify task-related ripples, supporting the physiologic nature of HFOs in the temporal lobe. Methods: Ten patients with unclear seizure origin and bilaterally implanted macroelectrodes took part in a visual memory consolidation task. In addition to iEEG, scalp EEG, electrooculography (EOG), and facial electromyography (EMG) were recorded. iEEG channels contralateral to the suspected epileptogenic zone were inspected visually for HFOs. Furthermore, HFOs were marked automatically using an RMS detector and a Stockwell classifier. We compared the two detection approaches and assessed a possible link between task performance and HFO occurrence during encoding and retrieval trials. Results: HFO occurrence rates were significantly lower when events were marked manually. The automatic detection algorithm was greatly biased by filter-artifacts. Surprisingly, EOG artifacts as seen on scalp electrodes appeared to be linked to many HFOs in the iEEG. Occurrence rates could not be associated to memory performance, and we were not able to detect strictly defined "clear" ripples. Conclusion: Filtered graphoelements in the EEG are known to mimic HFOs and thus constitute a problem. So far, in invasive EEG recordings mostly technical artifacts and filtered epileptiform discharges have been considered as sources for these "false" HFOs. The data at hand suggests that even ocular artifacts might bias automatic detection in invasive recordings. Strict guidelines and standards for HFO detection are necessary in order to identify artifact-derived HFOs, especially in conditions when cognitive tasks might produce a high amount of artifacts.
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Affiliation(s)
- Aljoscha Thomschewski
- Department of Neurology, Christian-Doppler Medical Center, Paracelsus Medical University, Salzburg, Austria,Department of Mathematics, Paris-Lodron University of Salzburg, Salzburg, Austria,Department of Psychology, Paris-Lodron University of Salzburg, Salzburg, Austria,*Correspondence: Aljoscha Thomschewski
| | - Nathalie Gerner
- Department of Neurology, Christian-Doppler Medical Center, Paracelsus Medical University, Salzburg, Austria
| | - Patrick B. Langthaler
- Department of Neurology, Christian-Doppler Medical Center, Paracelsus Medical University, Salzburg, Austria,Department of Mathematics, Paris-Lodron University of Salzburg, Salzburg, Austria
| | - Eugen Trinka
- Department of Neurology, Christian-Doppler Medical Center, Paracelsus Medical University, Salzburg, Austria
| | - Arne C. Bathke
- Department of Mathematics, Paris-Lodron University of Salzburg, Salzburg, Austria,Intelligent Data Analytics Lab Salzburg, Paris-Lodron University of Salzburg, Salzburg, Austria
| | - Jürgen Fell
- Department of Epileptology, University Hospital Bonn, Bonn, Germany
| | - Yvonne Höller
- Faculty of Psychology, University of Akureyri, Akureyri, Iceland
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Charupanit K, Sen-Gupta I, Lin JJ, Lopour BA. Amplitude of high frequency oscillations as a biomarker of the seizure onset zone. Clin Neurophysiol 2020; 131:2542-2550. [PMID: 32927209 DOI: 10.1016/j.clinph.2020.07.021] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2020] [Revised: 07/13/2020] [Accepted: 07/19/2020] [Indexed: 10/23/2022]
Abstract
OBJECTIVE Studies of high frequency oscillations (HFOs) in epilepsy have primarily tested the HFO rate as a biomarker of the seizure onset zone (SOZ), but the rate varies over time and is not robust for all individual subjects. As an alternative, we tested the performance of HFO amplitude as a potential SOZ biomarker using two automated detection algorithms. METHOD HFOs were detected in intracranial electroencephalogram (iEEG) from 11 patients using a machine learning algorithm and a standard amplitude-based algorithm. For each detector, SOZ and non-SOZ channels were classified using the rate and amplitude of high frequency events, and performance was compared using receiver operating characteristic curves. RESULTS The amplitude of detected events was significantly higher in SOZ. Across subjects, amplitude more accurately classified SOZ/non-SOZ than rate (higher values of area under the ROC curve and sensitivity, and lower false positive rates). Moreover, amplitude was more consistent across segments of data, indicated by lower coefficient of variation. CONCLUSION As an SOZ biomarker, HFO amplitude offers advantages over HFO rate: it exhibits higher classification accuracy, more consistency over time, and robustness to parameter changes. SIGNIFICANCE This biomarker has the potential to increase the generalizability of HFOs and facilitate clinical implementation as a tool for SOZ localization.
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Affiliation(s)
- Krit Charupanit
- University of California, Irvine, Biomedical Engineering, 3120 Natural Sciences II, University of California, Irvine, CA 92697, USA
| | - Indranil Sen-Gupta
- University of California Irvine Medical Center, Neurology, 101 The City Drive South, Pavilion 1, Orange, CA 92868, USA
| | - Jack J Lin
- University of California, Irvine, Neurology, 101 The City Drive South, Building 22C, 2nd Floor, RT13, Orange, CA 92602, USA
| | - Beth A Lopour
- University of California, Irvine, Biomedical Engineering, 3120 Natural Sciences II, University of California, Irvine, CA 92697, USA.
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Liu S, Parvizi J. Cognitive refractory state caused by spontaneous epileptic high-frequency oscillations in the human brain. Sci Transl Med 2020; 11:11/514/eaax7830. [PMID: 31619544 DOI: 10.1126/scitranslmed.aax7830] [Citation(s) in RCA: 40] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2019] [Revised: 06/21/2019] [Accepted: 09/09/2019] [Indexed: 12/31/2022]
Abstract
Epileptic brain tissue is often considered physiologically dysfunctional, and the optimal treatment of many patients with uncontrollable seizures involves surgical removal of the epileptic tissue. However, it is unclear to what extent the epileptic tissue is capable of generating physiological responses to cognitive stimuli and how cognitive deficits ensuing surgical resections can be determined using state-of-the-art computational methods. To address these unknowns, we recruited six patients with nonlesional epilepsies and identified the epileptic focus in each patient with intracranial electrophysiological monitoring. We measured spontaneous epileptic activity in the form of high-frequency oscillations (HFOs), recorded stimulus-locked physiological responses in the form of physiological high-frequency broadband activity, and explored the interaction of the two as well as their behavioral correlates. Across all patients, we found abundant normal physiological responses to relevant cognitive stimuli in the epileptic sites. However, these physiological responses were more likely to be "seized" (delayed or missed) when spontaneous HFOs occurred about 850 to 1050 ms before, until about 150 to 250 ms after, the onset of relevant cognitive stimuli. Furthermore, spontaneous HFOs in medial temporal lobe affected the subjects' memory performance. Our findings suggest that nonlesional epileptic sites are capable of generating normal physiological responses and highlight a compelling mechanism for cognitive deficits in these patients. The results also offer clinicians a quantitative tool to differentiate pathological and physiological high-frequency activities in epileptic sites and to indirectly assess their possible cognitive reserve function and approximate the risk of resective surgery.
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Affiliation(s)
- Su Liu
- Laboratory of Behavioral and Cognitive Neuroscience, Department of Neurology and Neurological Sciences, Stanford University, CA 94305, USA
| | - Josef Parvizi
- Laboratory of Behavioral and Cognitive Neuroscience, Department of Neurology and Neurological Sciences, Stanford University, CA 94305, USA.
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35
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Remakanthakurup Sindhu K, Staba R, Lopour BA. Trends in the use of automated algorithms for the detection of high-frequency oscillations associated with human epilepsy. Epilepsia 2020; 61:1553-1569. [PMID: 32729943 DOI: 10.1111/epi.16622] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2020] [Revised: 06/17/2020] [Accepted: 06/29/2020] [Indexed: 12/11/2022]
Abstract
High-frequency oscillations (HFOs) in intracranial electroencephalography (EEG) are a promising biomarker of the epileptogenic zone and tool for surgical planning. Many studies have shown that a high rate of HFOs (number per minute) is correlated with the seizure-onset zone, and complete removal of HFO-generating brain regions has been associated with seizure-free outcome after surgery. In order to use HFOs as a biomarker, these transient events must first be detected in electrophysiological data. Because visual detection of HFOs is time-consuming and subject to low interrater reliability, many automated algorithms have been developed, and they are being used increasingly for such studies. However, there is little guidance on how to select an algorithm, implement it in a clinical setting, and validate the performance. Therefore, we aim to review automated HFO detection algorithms, focusing on conceptual similarities and differences between them. We summarize the standard steps for data pre-processing, as well as post-processing strategies for rejection of false-positive detections. We also detail four methods for algorithm testing and validation, and we describe the specific goal achieved by each one. We briefly review direct comparisons of automated algorithms applied to the same data set, emphasizing the importance of optimizing detection parameters. Then, to assess trends in the use of automated algorithms and their potential for use in clinical studies, we review evidence for the relationship between automatically detected HFOs and surgical outcome. We conclude with practical recommendations and propose standards for the selection, implementation, and validation of automated HFO-detection algorithms.
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Affiliation(s)
| | | | - Beth A Lopour
- Biomedical Engineering, UC Irvine, Irvine, California, USA
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36
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Wan X, Fang Z, Wu M, Du Y. Automatic detection of HFOs based on singular value decomposition and improved fuzzy c-means clustering for localization of seizure onset zones. Neurocomputing 2020. [DOI: 10.1016/j.neucom.2020.03.010] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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37
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Guo J, Li H, Pan Y, Gao Y, Sun J, Wu T, Xiang J, Luo X. Automatic and Accurate Epilepsy Ripple and Fast Ripple Detection via Virtual Sample Generation and Attention Neural Networks. IEEE Trans Neural Syst Rehabil Eng 2020; 28:1710-1719. [PMID: 32746301 DOI: 10.1109/tnsre.2020.3004368] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
About 1% of the population around the world suffers from epilepsy. The success of epilepsy surgery depends critically on pre-operative localization of epileptogenic zones. High frequency oscillations including ripples (80-250 Hz) and fast ripples (250-500 Hz) are commonly used as biomarkers to localize epileptogenic zones. Recent literature demonstrated that fast ripples indicate epileptogenic zones better than ripples. Thus, it is crucial to accurately detect fast ripples from ripples signals of magnetoencephalography for improving outcome of epilepsy surgery. This paper proposes an automatic and accurate ripple and fast ripple detection method that employs virtual sample generation and neural networks with an attention mechanism. We evaluate our proposed detector on patient data with 50 ripples and 50 fast ripples labeled by two experts. The experimental results show that our new detector outperforms multiple traditional machine learning models. In particular, our method can achieve a mean accuracy of 89.3% and an average area under the receiver operating characteristic curve of 0.88 in 50 repeats of random subsampling validation. In addition, we experimentally demonstrate the effectiveness of virtual sample generation, attention mechanism, and architecture of neural network models.
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Zhao B, Hu W, Zhang C, Wang X, Wang Y, Liu C, Mo J, Yang X, Sang L, Ma Y, Shao X, Zhang K, Zhang J. Integrated Automatic Detection, Classification and Imaging of High Frequency Oscillations With Stereoelectroencephalography. Front Neurosci 2020; 14:546. [PMID: 32581688 PMCID: PMC7287040 DOI: 10.3389/fnins.2020.00546] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2020] [Accepted: 05/04/2020] [Indexed: 11/13/2022] Open
Abstract
Objective During presurgical evaluation for focal epilepsy patients, the evidence supporting the use of high frequency oscillations (HFOs) for delineating the epileptogenic zone (EZ) increased over the past decade. This study aims to develop and validate an integrated automatic detection, classification and imaging pipeline of HFOs with stereoelectroencephalography (SEEG) to narrow the gap between HFOs quantitative analysis and clinical application. Methods The proposed pipeline includes stages of channel inclusion, candidate HFOs detection and automatic labeling with four trained convolutional neural network (CNN) classifiers and HFOs sorting based on occurrence rate and imaging. We first evaluated the initial detector using an open simulated dataset. After that, we validated our full algorithm in a 20-patient cohort against three assumptions based on previous studies. Classified HFOs results were compared with seizure onset zone (SOZ) channels for their concordance. The receiver operating characteristic (ROC) curve and the corresponding area under the curve (AUC) were calculated representing the prediction ability of the labeled HFOs outputs for SOZ. Results The initial detector demonstrated satisfactory performance on the simulated dataset. The four CNN classifiers converged quickly during training, and the accuracies on the validation dataset were above 95%. The localization value of HFOs was significantly improved by HFOs classification. The AUC values of the 20 testing patients increased after HFO classification, indicating a satisfactory prediction value of the proposed algorithm for EZ identification. Conclusion Our detector can provide robust HFOs analysis results revealing EZ at the individual level, which may ultimately push forward the transitioning of HFOs analysis into a meaningful part of the presurgical evaluation and surgical planning.
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Affiliation(s)
- Baotian Zhao
- Department of Neurosurgery, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
| | - Wenhan Hu
- Department of Neurosurgery, Beijing Tiantan Hospital, Capital Medical University, Beijing, China.,Stereotactic and Functional Neurosurgery Laboratory, Beijing Neurosurgical Institute, Capital Medical University, Beijing, China.,Beijing Key Laboratory of Neurostimulation, Beijing, China.,China National Clinical Research Center for Neurological Diseases, Beijing, China
| | - Chao Zhang
- Department of Neurosurgery, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
| | - Xiu Wang
- Department of Neurosurgery, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
| | - Yao Wang
- Department of Neurosurgery, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
| | - Chang Liu
- Department of Neurosurgery, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
| | - Jiajie Mo
- Department of Neurosurgery, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
| | - Xiaoli Yang
- Department of Neurosurgery, Beijing Fengtai Hospital, Beijing, China
| | - Lin Sang
- Department of Neurosurgery, Beijing Fengtai Hospital, Beijing, China
| | - Yanshan Ma
- Department of Neurosurgery, Beijing Fengtai Hospital, Beijing, China
| | - Xiaoqiu Shao
- Department of Neurology, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
| | - Kai Zhang
- Department of Neurosurgery, Beijing Tiantan Hospital, Capital Medical University, Beijing, China.,Stereotactic and Functional Neurosurgery Laboratory, Beijing Neurosurgical Institute, Capital Medical University, Beijing, China.,Beijing Key Laboratory of Neurostimulation, Beijing, China.,China National Clinical Research Center for Neurological Diseases, Beijing, China
| | - Jianguo Zhang
- Department of Neurosurgery, Beijing Tiantan Hospital, Capital Medical University, Beijing, China.,Stereotactic and Functional Neurosurgery Laboratory, Beijing Neurosurgical Institute, Capital Medical University, Beijing, China.,Beijing Key Laboratory of Neurostimulation, Beijing, China.,China National Clinical Research Center for Neurological Diseases, Beijing, China
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Gerner N, Thomschewski A, Marcu A, Trinka E, Höller Y. Pitfalls in Scalp High-Frequency Oscillation Detection From Long-Term EEG Monitoring. Front Neurol 2020; 11:432. [PMID: 32582002 PMCID: PMC7280487 DOI: 10.3389/fneur.2020.00432] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2020] [Accepted: 04/23/2020] [Indexed: 11/17/2022] Open
Abstract
Aims: Intracranially recorded high-frequency oscillations (>80 Hz) are considered a candidate epilepsy biomarker. Recent studies claimed their detectability on the scalp surface. We aimed to investigate the applicability of high-frequency oscillation analysis to routine surface EEG obtained at an epilepsy monitoring unit. Methods: We retrospectively analyzed surface EEGs of 18 patients with focal epilepsy and six controls, recorded during sleep under maximal medication withdrawal. As a proof of principle, the occurrence of motor task-related events during wakefulness was analyzed in a subsample of six patients with seizure- or syncope-related motor symptoms. Ripples (80-250 Hz) and fast ripples (>250 Hz) were identified by semi-automatic detection. Using semi-parametric statistics, differences in spontaneous and task-related occurrence rates were examined within subjects and between diagnostic groups considering the factors diagnosis, brain region, ripple type, and task condition. Results: We detected high-frequency oscillations in 17 out of 18 patients and in four out of six controls. Results did not show statistically significant differences in the mean rates of event occurrences, neither regarding the laterality of the epileptic focus, nor with respect to active and inactive task conditions, or the moving hand laterality. Significant differences in general spontaneous incidence [WTS(1) = 9.594; p = 0.005] that indicated higher rates of fast ripples compared to ripples, notably in patients with epilepsy compared to the control group, may be explained by variations in data quality. Conclusion: The current analysis methods are prone to biases. A common agreement on a standard operating procedure is needed to ensure reliable and economic detection of high-frequency oscillations.
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Affiliation(s)
- Nathalie Gerner
- Department of Neurology, Christian-Doppler Medical Centre, Centre for Cognitive Neuroscience, Paracelsus Medical University, Salzburg, Austria,Department of Mathematics, Paris-Lodron University of Salzburg, Salzburg, Austria
| | - Aljoscha Thomschewski
- Department of Neurology, Christian-Doppler Medical Centre, Centre for Cognitive Neuroscience, Paracelsus Medical University, Salzburg, Austria,Department of Mathematics, Paris-Lodron University of Salzburg, Salzburg, Austria,*Correspondence: Aljoscha Thomschewski
| | - Adrian Marcu
- Department of Neurology, Christian-Doppler Medical Centre, Centre for Cognitive Neuroscience, Paracelsus Medical University, Salzburg, Austria
| | - Eugen Trinka
- Department of Neurology, Christian-Doppler Medical Centre, Centre for Cognitive Neuroscience, Paracelsus Medical University, Salzburg, Austria
| | - Yvonne Höller
- Department of Neurology, Christian-Doppler Medical Centre, Centre for Cognitive Neuroscience, Paracelsus Medical University, Salzburg, Austria,Department of Psychology, University of Akureyri, Akureyri, Iceland
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Charupanit K, Sen-Gupta I, Lin JJ, Lopour BA. Detection of anomalous high-frequency events in human intracranial EEG. Epilepsia Open 2020; 5:263-273. [PMID: 32524052 PMCID: PMC7278560 DOI: 10.1002/epi4.12397] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2019] [Revised: 04/09/2020] [Accepted: 04/09/2020] [Indexed: 11/23/2022] Open
Abstract
Objective High‐frequency oscillations (HFOs) are a promising biomarker for the epileptogenic zone. However, no physiological definition of an HFO has been established, so detection relies on the empirical definition of an HFO derived from visual observation. This can bias estimates of HFO features such as amplitude and duration, thereby hindering their utility as biomarkers. Therefore, we set out to develop an algorithm that detects high‐frequency events in the intracranial EEG that are morphologically distinct from background without requiring assumptions about event amplitude or shape. Method We propose the anomaly detection algorithm (ADA), which uses unsupervised machine learning to identify segments of data that are distinct from the background. We apply ADA and a standard HFO detector using a root mean square amplitude threshold to intracranial EEG from 11 patients undergoing evaluation for epilepsy surgery. The rate, amplitude, and duration of the detected events and the percent overlap between the two detectors are compared. Result In the seizure onset zone (SOZ), ADA detected a subset of conventional HFOs. In non‐SOZ channels, ADA detected at least twice as many events as the standard approach, including some conventional HFOs; however, ADA also identified many low and intermediate amplitude events missed by the standard amplitude‐based method. The rate of ADA events was similar across all channels; however, the amplitude of ADA events was significantly higher in SOZ channels (P < .0045), and the amplitude measurement was more stable over time than the HFO rate, as indicated by a lower coefficient of variation (P < .0125). Significance ADA does not require human supervision, parameter optimization, or prior assumptions about event shape, amplitude, or duration. Our results suggest that the algorithm's estimate of event amplitude may differentiate SOZ and non‐SOZ channels. Further studies will examine the utility of HFO amplitude as a biomarker for epilepsy surgical outcome.
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Affiliation(s)
- Krit Charupanit
- Biomedical Engineering University of California, Irvine Irvine CA USA
| | - Indranil Sen-Gupta
- Comprehensive Epilepsy Program Department of Neurology University of California, Irvine Irvine CA USA
| | - Jack J Lin
- Biomedical Engineering University of California, Irvine Irvine CA USA.,Comprehensive Epilepsy Program Department of Neurology University of California, Irvine Irvine CA USA
| | - Beth A Lopour
- Biomedical Engineering University of California, Irvine Irvine CA USA
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Lachner-Piza D, Jacobs J, Schulze-Bonhage A, Stieglitz T, Dumpelmann M. Estimation of the epileptogenic-zone with HFO sub-groups exhibiting various levels of epileptogenicity .. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2020; 2019:2543-2546. [PMID: 31946415 DOI: 10.1109/embc.2019.8856733] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
High-Frequency-Oscillations (HFO) are biomarkers of the epileptogenic-zone (EZ) and thus a potential aid in guiding epilepsy-surgery. HFO are normally sub-divided according to their oscillating-frequency into Ripples (80-250 Hz) and Fast-Ripples (FR) (250-500 Hz) and are known to also occur in the non-epileptic brain. We address two challenges faced by HFO: firstly, estimating the margins of the EZ using the HFO occurrence-rate from each intracranial EEG channel; secondly, selecting HFO sub-groups with a higher probability of being purely epileptic. We propose the clustering of channels with high HFO occurrence-rates as a deterministic method to delimit the EZ. Additionally, we perform the EZ estimation using 9 sub-groups of HFO; these sub-groups are determined by their temporal and spatial coincidence with intracranial interictal-epileptic-spikes (IES) and are assumed to have varying levels of epileptogenicity. The EZ estimated with the different HFO-sub-groups are compared between themselves and with a proxy of the factually undefinable EZ, namely the resected-volume (RV). The proposed clustering method proved to be deterministic and allowed estimating the EZ for each patient and each HFO-sub-group. Those Ripples assumed to be more epileptogenic occurred in lower numbers than all Ripples but showed the highest correspondence with the RV. All FR sub-groups showed a high specificity to the RV. The proposed clustering method successfully extracted the information from the HFO occurrence-rate to estimate the EZ. The selection of more epileptogenic HFO based on their coincidence with IES proved to be of value for both Ripples and FR.
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Migliorelli C, Bachiller A, Alonso JF, Romero S, Aparicio J, Jacobs-Le Van J, Mañanas MA, San Antonio-Arce V. SGM: a novel time-frequency algorithm based on unsupervised learning improves high-frequency oscillation detection in epilepsy. J Neural Eng 2020; 17:026032. [PMID: 32213672 DOI: 10.1088/1741-2552/ab8345] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
OBJECTIVE We propose a novel automated method called the S-Transform Gaussian Mixture detection algorithm (SGM) to detect high-frequency oscillations (HFO) combining the strengths of different families of previously published detectors. APPROACH This algorithm does not depend on parameter tuning on a subject (or database) basis, uses time-frequency characteristics, and relies on non-supervised classification to determine if the events standing out from the baseline activity are HFO or not. SGM consists of three steps: the first stage computes the signal baseline using the entropy of the autocorrelation; the second uses the S-Transform to obtain several time-frequency features (area, entropy, and time and frequency widths); and in the third stage Gaussian mixture models cluster time-frequency features to decide if events correspond to HFO-like activity. To validate the SGM algorithm we tested its performance in simulated and real environments. MAIN RESULTS We assessed the algorithm on a publicly available simulated stereoelectroencephalographic (SEEG) database with varying signal-to-noise ratios (SNR), obtaining very good results for medium and high SNR signals. We further tested the SGM algorithm on real signals from patients with focal epilepsy, in which HFO detection was performed visually by experts, yielding a high agreement between experts and SGM. SIGNIFICANCE The SGM algorithm displayed proper performance in simulated and real environments and therefore can be used for non-supervised detection of HFO. This non-supervised algorithm does not require previous labelling by experts or parameter adjustment depending on the subject or database considered. SGM is not a computationally intensive algorithm, making it suitable to detect and characterize HFO in long-term SEEG recordings.
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Affiliation(s)
- Carolina Migliorelli
- CIBER de Bioingeniería, Biomateriales y Nanomedicina (CIBER-BBN), Madrid, Spain. Department of Automatic Control (ESAII), Biomedical Engineering Research Centre (CREB), Universitat Politècnica de Catalunya (UPC), Barcelona, Spain. Institut de Recerca Pediàtrica Hospital Sant Joan de Déu, Barcelona, Spain
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Venturelli L, Kohler AC, Stupar P, Villalba MI, Kalauzi A, Radotic K, Bertacchi M, Dinarelli S, Girasole M, Pešić M, Banković J, Vela ME, Yantorno O, Willaert R, Dietler G, Longo G, Kasas S. A perspective view on the nanomotion detection of living organisms and its features. J Mol Recognit 2020; 33:e2849. [PMID: 32227521 DOI: 10.1002/jmr.2849] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2019] [Revised: 03/14/2020] [Accepted: 03/16/2020] [Indexed: 12/23/2022]
Abstract
The insurgence of newly arising, rapidly developing health threats, such as drug-resistant bacteria and cancers, is one of the most urgent public-health issues of modern times. This menace calls for the development of sensitive and reliable diagnostic tools to monitor the response of single cells to chemical or pharmaceutical stimuli. Recently, it has been demonstrated that all living organisms oscillate at a nanometric scale and that these oscillations stop as soon as the organisms die. These nanometric scale oscillations can be detected by depositing living cells onto a micro-fabricated cantilever and by monitoring its displacements with an atomic force microscope-based electronics. Such devices, named nanomotion sensors, have been employed to determine the resistance profiles of life-threatening bacteria within minutes, to evaluate, among others, the effect of chemicals on yeast, neurons, and cancer cells. The data obtained so far demonstrate the advantages of nanomotion sensing devices in rapidly characterizing microorganism susceptibility to pharmaceutical agents. Here, we review the key aspects of this technique, presenting its major applications. and detailing its working protocols.
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Affiliation(s)
- Leonardo Venturelli
- Laboratoire de Physique de la Matière Vivante, Institut de Physique, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland
| | - Anne-Céline Kohler
- Laboratoire de Physique de la Matière Vivante, Institut de Physique, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland
| | - Petar Stupar
- Laboratoire de Physique de la Matière Vivante, Institut de Physique, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland
| | - Maria I Villalba
- Centro de Investigación y Desarrollo en Fermentaciones Industriales (CINDEFI-CONICET-CCT La Plata), Facultad de Ciencias Exactas, Universidad Nacional de La Plata, La Plata, Argentina
| | - Aleksandar Kalauzi
- Institute for Multidisciplinary Research, Department of Life Sciences, University of Belgrade, Belgrade, Serbia
| | - Ksenija Radotic
- Institute for Multidisciplinary Research, Department of Life Sciences, University of Belgrade, Belgrade, Serbia
| | | | - Simone Dinarelli
- Consiglio Nazionale delle Ricerche - Istituto di Struttura della Materia, CNR-ISM, Rome, Italy
| | - Marco Girasole
- Consiglio Nazionale delle Ricerche - Istituto di Struttura della Materia, CNR-ISM, Rome, Italy
| | - Milica Pešić
- Department of Neurobiology, Institute for Biological Research "Siniša Stanković" National Institute of Republic of Serbia, University of Belgrade, Belgrade, Serbia
| | - Jasna Banković
- Department of Neurobiology, Institute for Biological Research "Siniša Stanković" National Institute of Republic of Serbia, University of Belgrade, Belgrade, Serbia
| | - Maria E Vela
- Instituto de Investigaciones Fisicoquímicas Teóricas y Aplicadas (INIFTA-CONICET-CCT La Plata), Universidad Nacional de La Plata, La Plata, Argentina
| | - Osvaldo Yantorno
- Centro de Investigación y Desarrollo en Fermentaciones Industriales (CINDEFI-CONICET-CCT La Plata), Facultad de Ciencias Exactas, Universidad Nacional de La Plata, La Plata, Argentina
| | - Ronnie Willaert
- ARG VUB-UGent NanoMicrobiology, IJRG VUB-EPFL BioNanotechnology & NanoMedicine, Structural Biology Brussels, Vrije Universiteit Brussel, Brussels, Belgium.,Department of Bioscience Engineering, University of Antwerp, Antwerp, Belgium
| | - Giovanni Dietler
- Laboratoire de Physique de la Matière Vivante, Institut de Physique, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland
| | - Giovanni Longo
- Consiglio Nazionale delle Ricerche - Istituto di Struttura della Materia, CNR-ISM, Rome, Italy
| | - Sandor Kasas
- Laboratoire de Physique de la Matière Vivante, Institut de Physique, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland.,Centre Universitaire Romand de Médecine Légale, UFAM, Université de Lausanne, Lausanne, Switzerland
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Dirodi M, Tamilia E, Grant PE, Madsen JR, Stufflebeam SM, Pearl PL, Papadelis C. Noninvasive Localization of High-Frequency Oscillations in Children with Epilepsy: Validation against Intracranial Gold-Standard. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2020; 2019:1555-1558. [PMID: 31946191 DOI: 10.1109/embc.2019.8857793] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
INTRODUCTION Patients with medically refractory epilepsy (MRE) need surgical resection of the epileptogenic zone (EZ) to gain seizure-freedom. High-frequency oscillations (HFOs, > 80 Hz) are promising biomarkers of the EZ that are typically localized using intracranial electroencephalography (icEEG). The goal of this study was to localize the cortical generators of HFOs non-invasively using high-density (HD) EEG and magnetoencephalography (MEG) and validate the localization against the gold-standard given by the icEEGdefined HFO-zone. METHODS We analyzed simultaneous HDEEG and MEG data from six children with MRE who underwent icEEG and surgery. We detected interictal HFOs (80-160 Hz) on HD-EEG and MEG separately, using an inhouse automatic detector followed by visual human review, and distinguished between HFOs with and without spikes. We localized the cortical generators of each HFO on HD-EEG or MEG using the wavelet Maximum Entropy on the Mean (wMEM). For the HFOs localized in the brain area covered by icEEG, we estimated the localization error (Eloc) with respect to the gold-standard, and classified them as either concordant (Eloc≤15mm) or not. RESULTS We found that: (i) HD-EEG presented a higher rate of HFOs than MEG (1 vs 0.5 HFOs/min, p=0.031); (ii) HFOs without spikes were more likely to be localized outside the brain regions of interest (i.e. covered by icEEG) than HFOs with spikes; and (iii) both HD-EEG and MEG showed high precision to the gold-standard (92% and 96%). CONCLUSION We reported quantitative evidence that HDEEG and MEG can localize the HFO cortical generators with high precision to the icEEG gold-standard in children with MRE, suggesting that they may possibly limit the need for icEEG prior to surgery. We also showed that HFOs with spikes on HD-EEG/MEG are more likely to be epileptogenic than those independent from spikes, which may represent physiological events from normal brain.
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Donos C, Mîndruţă I, Barborica A. Unsupervised Detection of High-Frequency Oscillations Using Time-Frequency Maps and Computer Vision. Front Neurosci 2020; 14:183. [PMID: 32265622 PMCID: PMC7104802 DOI: 10.3389/fnins.2020.00183] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2019] [Accepted: 02/19/2020] [Indexed: 12/15/2022] Open
Abstract
High-frequency oscillations >80 Hz (HFOs) have unique features distinguishing them from spikes and artifactual components that can be well-evidenced in the time-frequency representations. We introduce an unsupervised HFO detector that uses computer-vision algorithms to detect HFO landmarks on two-dimensional (2D) time-frequency maps. To validate the detector, we introduce an analytical model of the HFO based on a sinewave having a Gaussian envelope, for which analytical equations in time-frequency space can be derived, allowing us to establish a direct correspondence between common HFO detection criteria in the time domain with the ones in the frequency domain, used by the computer-vision detection algorithm. The detector identifies potential HFO events on the time-frequency representation, which are classified as true HFOs if criteria regarding the HFO's frequency, amplitude, and duration are met. The detector is validated on simulated HFOs according to the analytical model, in the presence of noise, with different signal-to-noise ratios (SNRs) ranging from −9 to 0 dB. The detector's sensitivity was 0.64 at an SNR of −9 dB, 0.98 at −6 dB, and >0.99 at −3 dB and 0 dB, while its positive prediction value was >0.95, regardless of the SNR. Using the same simulation dataset, our detector is benchmarked against four previously published HFO detectors. The F-measure, a combined metric that takes into account both sensitivity and positive prediction value, was used to compare detection algorithms. Our detector surpassed the other detectors at −6, −3, and 0 dB and had the second best F-score at −9 dB SNR after the MNI detector (0.77 vs. 0.83). The ability to detect HFOs in clinical recordings has been tested on a set of 36 intracranial electroencephalogram (EEG) channels in six patients, with 89% of the detections being validated by two independent reviewers. The results demonstrate that the unsupervised detection of HFOs based on their 2D features in time-frequency maps is feasible and has a performance comparable or better than the most used HFO detectors.
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Affiliation(s)
- Cristian Donos
- Physics Department, Bucharest University, Bucharest, Romania
| | - Ioana Mîndruţă
- Department of Neurology, Bucharest University Emergency Hospital, Bucharest, Romania.,Department of Neurology, Carol Davila University of Medicine and Pharmacy, Bucharest, Romania
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Abbasi H, Gunn AJ, Bennet L, Unsworth CP. Latent Phase Identification of High-Frequency Micro-Scale Gamma Spike Transients in the Hypoxic Ischemic EEG of Preterm Fetal Sheep Using Spectral Analysis and Fuzzy Classifiers. SENSORS 2020; 20:s20051424. [PMID: 32150987 PMCID: PMC7085637 DOI: 10.3390/s20051424] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/29/2020] [Revised: 02/27/2020] [Accepted: 03/03/2020] [Indexed: 12/12/2022]
Abstract
Premature babies are at high risk of serious neurodevelopmental disabilities, which in many cases are related to perinatal hypoxic–ischemic encephalopathy (HIE). Studies of neuroprotection in animal models consistently suggest that treatment must be started as early as possible in the first 6 h after hypoxia–ischemia (HI), the so-called latent phase before secondary deterioration, to improve outcomes. We have shown in preterm sheep that EEG biomarkers of injury, in the form of high-frequency micro-scale spike transients, develop and evolve in this critical latent phase after severe asphyxia. Real-time automatic identification of such events is important for the early and accurate detection of HI injury, so that the right treatment can be implemented at the right time. We have previously reported successful strategies for accurate identification of EEG patterns after HI. In this study, we report an alternative high-performance approach based on the fusion of spectral Fourier analysis and Type-I fuzzy classifiers (FFT-Type-I-FLC). We assessed its performance in over 2520 min of latent phase EEG recordings from seven asphyxiated in utero preterm fetal sheep exposed to a range of different occlusion periods. The FFT-Type-I-FLC classifier demonstrated 98.9 ± 1.0% accuracy for identification of high-frequency spike transients in the gamma frequency band (namely 80–120 Hz) post-HI. The spectral-based approach (FFT-Type-I-FLC classifier) has similar accuracy to our previous reverse biorthogonal wavelets rbio2.8 basis function and type-1 fuzzy classifier (rbio-WT-Type-1-FLC), providing competitive performance (within the margin of error: 0.89%), but it is computationally simpler and would be readily adapted to identify other potentially relevant EEG waveforms.
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Affiliation(s)
- Hamid Abbasi
- Department of Engineering Science, Faculty of Engineering, University of Auckland, Auckland 1142, New Zealand;
- Department of Physiology, Faculty of Medical and Health Sciences, University of Auckland, Auckland 1023, New Zealand; (A.J.G.); (L.B.)
- Correspondence:
| | - Alistair J. Gunn
- Department of Physiology, Faculty of Medical and Health Sciences, University of Auckland, Auckland 1023, New Zealand; (A.J.G.); (L.B.)
| | - Laura Bennet
- Department of Physiology, Faculty of Medical and Health Sciences, University of Auckland, Auckland 1023, New Zealand; (A.J.G.); (L.B.)
| | - Charles P. Unsworth
- Department of Engineering Science, Faculty of Engineering, University of Auckland, Auckland 1142, New Zealand;
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Tamilia E, Dirodi M, Alhilani M, Grant PE, Madsen JR, Stufflebeam SM, Pearl PL, Papadelis C. Scalp ripples as prognostic biomarkers of epileptogenicity in pediatric surgery. Ann Clin Transl Neurol 2020; 7:329-342. [PMID: 32096612 PMCID: PMC7086004 DOI: 10.1002/acn3.50994] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2019] [Revised: 01/29/2020] [Accepted: 01/30/2020] [Indexed: 12/11/2022] Open
Abstract
Objective To assess the ability of high‐density Electroencephalography (HD‐EEG) and magnetoencephalography (MEG) to localize interictal ripples, distinguish between ripples co‐occurring with spikes (ripples‐on‐spike) and independent from spikes (ripples‐alone), and evaluate their localizing value as biomarkers of epileptogenicity in children with medically refractory epilepsy. Methods We retrospectively studied 20 children who underwent epilepsy surgery. We identified ripples on HD‐EEG and MEG data, localized their generators, and compared them with intracranial EEG (icEEG) ripples. When ripples and spikes co‐occurred, we performed source imaging distinctly on the data above 80 Hz (to localize ripples) and below 70 Hz (to localize spikes). We assessed whether missed resection of ripple sources predicted poor outcome, separately for ripples‐on‐spikes and ripples‐alone. Similarly, predictive value of spikes was calculated. Results We observed scalp ripples in 16 patients (10 good outcome). Ripple sources were highly concordant to the icEEG ripples (HD‐EEG concordance: 79%; MEG: 83%). When ripples and spikes co‐occurred, their sources were spatially distinct in 83‐84% of the cases. Removing the sources of ripples‐on‐spikes predicted good outcome with 90% accuracy for HD‐EEG (P = 0.008) and 86% for MEG (P = 0.044). Conversely, removing ripples‐alone did not predict outcome. Resection of spike sources (generated at the same time as ripples) predicted good outcome for HD‐EEG (P = 0.036; accuracy = 87%), while did not reach significance for MEG (P = 0.1; accuracy = 80%). Interpretation HD‐EEG and MEG localize interictal ripples with high precision in children with refractory epilepsy. Scalp ripples‐on‐spikes are prognostic, noninvasive biomarkers of epileptogenicity, since removing their cortical generators predicts good outcome. Conversely, scalp ripples‐alone are most likely generated by non‐epileptogenic areas.
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Affiliation(s)
- Eleonora Tamilia
- Laboratory of Children’s Brain DynamicsDivision of Newborn MedicineDepartment of MedicineBoston Children's HospitalHarvard Medical SchoolBostonMassachusetts
- Fetal‐Neonatal Neuroimaging and Developmental Science CenterDivision of Newborn MedicineDepartment of MedicineBoston Children’s HospitalHarvard Medical SchoolBostonMassachusetts
| | - Matilde Dirodi
- G. Tec Medical Engineering GmbHGuger Technologies OGGrazAustria
| | - Michel Alhilani
- Laboratory of Children’s Brain DynamicsDivision of Newborn MedicineDepartment of MedicineBoston Children's HospitalHarvard Medical SchoolBostonMassachusetts
- Fetal‐Neonatal Neuroimaging and Developmental Science CenterDivision of Newborn MedicineDepartment of MedicineBoston Children’s HospitalHarvard Medical SchoolBostonMassachusetts
| | - P. Ellen Grant
- Fetal‐Neonatal Neuroimaging and Developmental Science CenterDivision of Newborn MedicineDepartment of MedicineBoston Children’s HospitalHarvard Medical SchoolBostonMassachusetts
| | - Joseph R. Madsen
- Division of Epilepsy SurgeryDepartment of NeurosurgeryBoston Children’s HospitalHarvard Medical SchoolBostonMassachusetts
| | - Steven M. Stufflebeam
- Athinoula A. Martinos Center for Biomedical ImagingMassachusetts General HospitalHarvard Medical SchoolBostonMassachusetts
| | - Phillip L. Pearl
- Division of Epilepsy and Clinical NeurophysiologyDepartment of NeurologyBoston Children’s HospitalHarvard Medical SchoolBostonMassachusetts
| | - Christos Papadelis
- Laboratory of Children’s Brain DynamicsDivision of Newborn MedicineDepartment of MedicineBoston Children's HospitalHarvard Medical SchoolBostonMassachusetts
- Jane and John Justin Neurosciences CenterCook Children's Health Care SystemFort WorthTexas
- School of MedicineTexas Christian University and University of North Texas Health Science CenterFort WorthTexas
- Department of BioengineeringUniversity of Texas at ArlingtonArlingtonTexas
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Velmurugan J, Nagarajan SS, Mariyappa N, Mundlamuri RC, Raghavendra K, Bharath RD, Saini J, Arivazhagan A, Rajeswaran J, Mahadevan A, Malla BR, Satishchandra P, Sinha S. Magnetoencephalography imaging of high frequency oscillations strengthens presurgical localization and outcome prediction. Brain 2019; 142:3514-3529. [PMID: 31553044 PMCID: PMC6892422 DOI: 10.1093/brain/awz284] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2018] [Revised: 06/12/2019] [Accepted: 07/11/2019] [Indexed: 11/13/2022] Open
Abstract
In patients with medically refractory epilepsy, resective surgery is the mainstay of therapy to achieve seizure freedom. However, ∼20-50% of cases have intractable seizures post-surgery due to the imprecise determination of epileptogenic zone. Recent intracranial studies suggest that high frequency oscillations between 80 and 200 Hz could serve as one of the consistent epileptogenicity biomarkers for localization of the epileptogenic zone. However, these high frequency oscillations are not adopted in the clinical setting because of difficult non-invasive detection. Here, we investigated non-invasive detection and localization of high frequency oscillations and its clinical utility in accurate pre-surgical assessment and post-surgical outcome prediction. We prospectively recruited 52 patients with medically refractory epilepsy who underwent standard pre-surgical workup including magnetoencephalography (MEG) followed by resective surgery after determination of the epileptogenic zone. The post-surgical outcome was assessed after 22.14 ± 10.05 months. Interictal epileptic spikes were expertly identified, and interictal epileptic oscillations across the neural activity frequency spectrum from 8 to 200 Hz were localized using adaptive spatial filtering methods. Localization results were compared with epileptogenic zone and resected cortex for congruence assessment and validated against the clinical outcome. The concordance rate of high frequency oscillations sources (80-200 Hz) with the presumed epileptogenic zone and the resected cortex were 75.0% and 78.8%, respectively, which is superior to that of other frequency bands and standard dipole fitting methods. High frequency oscillation sources corresponding with the resected cortex, had the best sensitivity of 78.0%, positive predictive value of 100% and an accuracy of 78.84% to predict the patient's surgical outcome, among all other frequency bands. If high frequency oscillation sources were spatially congruent with resected cortex, patients had an odds ratio of 5.67 and 82.4% probability of achieving a favourable surgical outcome. If high frequency oscillations sources were discordant with the epileptogenic zone or resection area, patient has an odds ratio of 0.18 and only 14.3% probability of achieving good outcome, and mostly tended to have an unfavourable outcome (χ2 = 5.22; P = 0.02; φ = -0.317). In receiver operating characteristic curve analyses, only sources of high-frequency oscillations demonstrated the best sensitivity and specificity profile in determining the patient's surgical outcome with area under the curve of 0.76, whereas other frequency bands indicate a poor predictive performance. Our study is the first non-invasive study to detect high frequency oscillations, address the efficacy of high frequency oscillations over the different neural oscillatory frequencies, localize them and clinically validate them with the post-surgical outcome in patients with medically refractory epilepsy. The evidence presented in the current study supports the fact that HFOs might significantly improve the presurgical assessment, and post-surgical outcome prediction, where it could widely be used in a clinical setting as a non-invasive biomarker.
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Affiliation(s)
- Jayabal Velmurugan
- Department of Clinical Neurosciences, National Institute of Mental Health and Neurosciences (NIMHANS), Bangalore, India
- MEG Research Center, National Institute of Mental Health and Neurosciences (NIMHANS), Bangalore, India
- Department of Neurology, National Institute of Mental Health and Neurosciences (NIMHANS), Bangalore, India
- Department of Radiology and Biomedical Imaging, University of California San Francisco (UCSF), San Francisco, USA
| | - Srikantan S Nagarajan
- Department of Radiology and Biomedical Imaging, University of California San Francisco (UCSF), San Francisco, USA
| | - Narayanan Mariyappa
- MEG Research Center, National Institute of Mental Health and Neurosciences (NIMHANS), Bangalore, India
| | - Ravindranadh C Mundlamuri
- Department of Neurology, National Institute of Mental Health and Neurosciences (NIMHANS), Bangalore, India
| | - Kenchaiah Raghavendra
- Department of Neurology, National Institute of Mental Health and Neurosciences (NIMHANS), Bangalore, India
| | - Rose Dawn Bharath
- Department of NIIR, National Institute of Mental Health and Neurosciences (NIMHANS), Bangalore, India
| | - Jitender Saini
- Department of NIIR, National Institute of Mental Health and Neurosciences (NIMHANS), Bangalore, India
| | - Arimappamagan Arivazhagan
- Department of Neurosurgery, National Institute of Mental Health and Neurosciences (NIMHANS), Bangalore, India
| | - Jamuna Rajeswaran
- Department of Neuropsychology, National Institute of Mental Health and Neurosciences (NIMHANS), Bangalore, India
| | - Anita Mahadevan
- Department of Pathology, National Institute of Mental Health and Neurosciences (NIMHANS), Bangalore, India
| | - Bhaskara Rao Malla
- Department of Neurosurgery, National Institute of Mental Health and Neurosciences (NIMHANS), Bangalore, India
| | - Parthasarathy Satishchandra
- MEG Research Center, National Institute of Mental Health and Neurosciences (NIMHANS), Bangalore, India
- Department of Neurology, National Institute of Mental Health and Neurosciences (NIMHANS), Bangalore, India
| | - Sanjib Sinha
- MEG Research Center, National Institute of Mental Health and Neurosciences (NIMHANS), Bangalore, India
- Department of Neurology, National Institute of Mental Health and Neurosciences (NIMHANS), Bangalore, India
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Charupanit K, Nunez MD, Bernardo D, Bebin M, Krueger DA, Northrup H, Sahin M, Wu JY, Lopour BA. Automated Detection of High Frequency Oscillations in Human Scalp Electroencephalogram. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2019; 2018:3116-3119. [PMID: 30441054 DOI: 10.1109/embc.2018.8513033] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
High frequency oscillations (HFOs) > 80 Hz are a promising biomarker of epileptic tissue. Recent evidence has shown that spontaneous HFOs can be recorded from the scalp, but detection of these electrographic events remains a challenge. Here, we modified a simple automatic detector, used originally for intracranial EEG (iEEG) recordings, to detect ripples and fast ripples in scalp EEG. We analyzed scalp EEG recordings of seven subjects and validated our detector and artifact rejection algorithm via visual review. Of the candidate events marked by the detector, 40% and 60% were confirmed to be ripples and fast ripples, respectively, by human visual review, making this algorithm suitable for supervised detection. Detected HFOs occurred at a rate of <1/min in most channels, and the average duration was 47 and 24 ms for ripples and fast ripples, respectively. The simplicity of the algorithm, with only a single parameter, enables the consistent application of automatic detection across recording modalities, and it could therefore be a tool for the assessment and localization of epileptic activity.
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50
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Boran E, Ramantani G, Krayenbühl N, Schreiber M, König K, Fedele T, Sarnthein J. High-density ECoG improves the detection of high frequency oscillations that predict seizure outcome. Clin Neurophysiol 2019; 130:1882-1888. [DOI: 10.1016/j.clinph.2019.07.008] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2019] [Revised: 05/31/2019] [Accepted: 07/06/2019] [Indexed: 01/11/2023]
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