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Blenkmann AO, Leske SL, Llorens A, Lin JJ, Chang EF, Brunner P, Schalk G, Ivanovic J, Larsson PG, Knight RT, Endestad T, Solbakk AK. Anatomical registration of intracranial electrodes. Robust model-based localization and deformable smooth brain-shift compensation methods. J Neurosci Methods 2024; 404:110056. [PMID: 38224783 DOI: 10.1016/j.jneumeth.2024.110056] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2023] [Revised: 11/27/2023] [Accepted: 01/03/2024] [Indexed: 01/17/2024]
Abstract
BACKGROUND Intracranial electrodes are typically localized from post-implantation CT artifacts. Automatic algorithms localizing low signal-to-noise ratio artifacts and high-density electrode arrays are missing. Additionally, implantation of grids/strips introduces brain deformations, resulting in registration errors when fusing post-implantation CT and pre-implantation MR images. Brain-shift compensation methods project electrode coordinates to cortex, but either fail to produce smooth solutions or do not account for brain deformations. NEW METHODS We first introduce GridFit, a model-based fitting approach that simultaneously localizes all electrodes' CT artifacts in grids, strips, or depth arrays. Second, we present CEPA, a brain-shift compensation algorithm combining orthogonal-based projections, spring-mesh models, and spatial regularization constraints. RESULTS We tested GridFit on ∼6000 simulated scenarios. The localization of CT artifacts showed robust performance under difficult scenarios, such as noise, overlaps, and high-density implants (<1 mm errors). Validation with data from 20 challenging patients showed 99% accurate localization of the electrodes (3160/3192). We tested CEPA brain-shift compensation with data from 15 patients. Projections accounted for simple mechanical deformation principles with < 0.4 mm errors. The inter-electrode distances smoothly changed across neighbor electrodes, while changes in inter-electrode distances linearly increased with projection distance. COMPARISON WITH EXISTING METHODS GridFit succeeded in difficult scenarios that challenged available methods and outperformed visual localization by preserving the inter-electrode distance. CEPA registration errors were smaller than those obtained for well-established alternatives. Additionally, modeling resting-state high-frequency activity in five patients further supported CEPA. CONCLUSION GridFit and CEPA are versatile tools for registering intracranial electrode coordinates, providing highly accurate results even in the most challenging implantation scenarios. The methods are implemented in the iElectrodes open-source toolbox.
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Affiliation(s)
- Alejandro Omar Blenkmann
- Department of Psychology, University of Oslo, Norway; RITMO Centre for Interdisciplinary Studies in Rhythm, Time, and Motion, University of Oslo, Norway.
| | - Sabine Liliana Leske
- Department of Musicology, University of Oslo, Norway; RITMO Centre for Interdisciplinary Studies in Rhythm, Time, and Motion, University of Oslo, Norway; Department of Neuropsychology, Helgeland Hospital, Mosjøen, Norway
| | - Anaïs Llorens
- Department of Psychology, University of Oslo, Norway; Department of Psychology and the Helen Wills Neuroscience Institute, University of California, Berkeley, USA; Université de Franche-Comté, SUPMICROTECH, CNRS, Institut FEMTO-ST, 25000 Besançon, France; Université Paris Cité, Institute of Psychiatry and Neuroscience of Paris (IPNP), INSERM U1266, Team TURC, 75014 Paris, France
| | - Jack J Lin
- Department of Neurology and Center for Mind and Brain, University of California, Davis, USA
| | - Edward F Chang
- Department of Neurological Surgery, University of California, San Francisco, USA
| | - Peter Brunner
- Department of Neurology, Albany Medical College, Albany, NY, USA; National Center for Adaptive Neurotechnologies, Albany, NY, USA; Department of Neurosurgery, Washington University School of Medicine, St. Louis, MO, USA
| | - Gerwin Schalk
- Department of Neurology, Albany Medical College, Albany, NY, USA; National Center for Adaptive Neurotechnologies, Albany, NY, USA; Tianqiao and Chrissy Chen Institute, Chen Frontier Lab for Applied Neurotechnology, Shanghai, China; Fudan University/Huashan Hospital, Department of Neurosurgery, Shanghai, China
| | | | | | - Robert Thomas Knight
- Department of Psychology and the Helen Wills Neuroscience Institute, University of California, Berkeley, USA
| | - Tor Endestad
- Department of Psychology, University of Oslo, Norway; RITMO Centre for Interdisciplinary Studies in Rhythm, Time, and Motion, University of Oslo, Norway; Department of Neuropsychology, Helgeland Hospital, Mosjøen, Norway
| | - Anne-Kristin Solbakk
- Department of Psychology, University of Oslo, Norway; RITMO Centre for Interdisciplinary Studies in Rhythm, Time, and Motion, University of Oslo, Norway; Department of Neurosurgery, Oslo University Hospital, Norway; Department of Neuropsychology, Helgeland Hospital, Mosjøen, Norway
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2
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Xu D, Zhang AL, Zheng JS, Ye MW, Li F, Qian GC, Shi HB, Jin XH, Huang LP, Mei JG, Mei GH, Xu Z, Fu H, Lin JJ, Ye HZ, Zheng Y, Hua LL, Yang M, Tong JM, Chen LL, Zhang YY, Yang DH, Zhou YL, Li HW, Lan YL, Xu YL, Feng JY, Chen X, Gong M, Chen ZM, Wang YS. [A multicenter prospective study on early identification of refractory Mycoplasma pneumoniae pneumonia in children]. Zhonghua Er Ke Za Zhi 2024; 62:317-322. [PMID: 38527501 DOI: 10.3760/cma.j.cn112140-20231121-00383] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Subscribe] [Scholar Register] [Indexed: 03/27/2024]
Abstract
Objective: To explore potential predictors of refractory Mycoplasma pneumoniae pneumonia (RMPP) in early stage. Methods: The prospective multicenter study was conducted in Zhejiang, China from May 1st, 2019 to January 31st, 2020. A total of 1 428 patients with fever >48 hours to <120 hours were studied. Their clinical data and oral pharyngeal swab samples were collected; Mycoplasma pneumoniae DNA in pharyngeal swab specimens was detected. Patients with positive Mycoplasma pneumoniae DNA results underwent a series of tests, including chest X-ray, complete blood count, C-reactive protein, lactate dehydrogenase (LDH), and procalcitonin. According to the occurrence of RMPP, the patients were divided into two groups, RMPP group and general Mycoplasma pneumoniae pneumonia (GMPP) group. Measurement data between the 2 groups were compared using Mann-Whitney U test. Logistic regression analyses were used to examine the associations between clinical data and RMPP. Receiver operating characteristic (ROC) curves were used to analyse the power of the markers for predicting RMPP. Results: A total of 1 428 patients finished the study, with 801 boys and 627 girls, aged 4.3 (2.7, 6.3) years. Mycoplasma pneumoniae DNA was positive in 534 cases (37.4%), of whom 446 cases (83.5%) were diagnosed with Mycoplasma pneumoniae pneumonia, including 251 boys and 195 girls, aged 5.2 (3.3, 6.9) years. Macrolides-resistant variation was positive in 410 cases (91.9%). Fifty-five cases were with RMPP, 391 cases with GMPP. The peak body temperature before the first visit and LDH levels in RMPP patients were higher than that in GMPP patients (39.6 (39.1, 40.0) vs. 39.2 (38.9, 39.7) ℃, 333 (279, 392) vs. 311 (259, 359) U/L, both P<0.05). Logistic regression showed the prediction probability π=exp (-29.7+0.667×Peak body temperature (℃)+0.004×LDH (U/L))/(1+exp (-29.7+0.667×Peak body temperature (℃)+0.004 × LDH (U/L))), the cut-off value to predict RMPP was 0.12, with a consensus of probability forecast of 0.89, sensitivity of 0.89, and specificity of 0.67; and the area under ROC curve was 0.682 (95%CI 0.593-0.771, P<0.01). Conclusion: In MPP patients with fever over 48 to <120 hours, a prediction probability π of RMPP can be calculated based on the peak body temperature and LDH level before the first visit, which can facilitate early identification of RMPP.
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Affiliation(s)
- D Xu
- Department of Pulmonology, Children's Hospital, Zhejiang University School of Medicine, National Clinical Research Center for Child Health, Hangzhou 310052, China
| | - A L Zhang
- Department of Pediatrics, the Second Hospital of Jiaxing, Jiaxing 314001, China
| | - J S Zheng
- Department of Pediatrics, Ningbo Women and Children's Hospital, Ningbo 315012, China
| | - M W Ye
- Department of Pediatrics, Sanmen People's Hospital, Taizhou 317199, China
| | - F Li
- Department of Pediatrics, Shaoxing Second Hospital, Shaoxing 312099, China
| | - G C Qian
- Department of Pediatrics, Changxing Maternal and Child Health Care Hospital, Huzhou 313199, China
| | - H B Shi
- Department of Pediatrics, Ningbo Medical Center Lihuili Hospital, Ningbo 315048, China
| | - X H Jin
- Department of Pediatrics, Taizhou Hospital of Zhejiang Province, Taizhou 317099, China
| | - L P Huang
- Department of Pediatrics, Zhoushan Women and Children's Hospital, Zhoushan 316004, China
| | - J G Mei
- Department of Pediatrics, Cixi Maternal and Child Health Care Hospital, Ningbo 315331, China
| | - G H Mei
- Department of Pediatrics, Quzhou Maternal and Child Health Care Hospital, Quzhou 324003, China
| | - Z Xu
- Department of Pediatrics, Huzhou Central Hospital, Huzhou 313099, China
| | - H Fu
- Department of Pediatrics, Shengsi People's Hospital, Zhoushan 202450, China
| | - J J Lin
- Department of Pediatrics, Lishui City People's Hospital, Lishui 323050, China
| | - H Z Ye
- Department of Pediatrics, the First People's Hospital of Huzhou, Huzhou 313099, China
| | - Y Zheng
- Department of Pediatrics, People's Hospital of Quzhou, Quzhou 324002, China
| | - L L Hua
- Department of Pediatrics, Ningbo Women and Children's Hospital, Ningbo 315012, China
| | - M Yang
- Department of Pediatrics, Sanmen People's Hospital, Taizhou 317199, China
| | - J M Tong
- Department of Pediatrics, Changxing Maternal and Child Health Care Hospital, Huzhou 313199, China
| | - L L Chen
- Department of Pediatrics, Taizhou Hospital of Zhejiang Province, Taizhou 317099, China
| | - Y Y Zhang
- Department of Pulmonology, Children's Hospital, Zhejiang University School of Medicine, National Clinical Research Center for Child Health, Hangzhou 310052, China
| | - D H Yang
- Department of Pulmonology, Children's Hospital, Zhejiang University School of Medicine, National Clinical Research Center for Child Health, Hangzhou 310052, China
| | - Y L Zhou
- Department of Pulmonology, Children's Hospital, Zhejiang University School of Medicine, National Clinical Research Center for Child Health, Hangzhou 310052, China
| | - H W Li
- Department of Pulmonology, Children's Hospital, Zhejiang University School of Medicine, National Clinical Research Center for Child Health, Hangzhou 310052, China
| | - Y L Lan
- Department of Pulmonology, Children's Hospital, Zhejiang University School of Medicine, National Clinical Research Center for Child Health, Hangzhou 310052, China
| | - Y L Xu
- Department of Pediatrics, Zhoushan Women and Children's Hospital, Zhoushan 316004, China
| | - J Y Feng
- Department of Pediatrics, Cixi Maternal and Child Health Care Hospital, Ningbo 315331, China
| | - X Chen
- Department of Pediatrics, Huzhou Central Hospital, Huzhou 313099, China
| | - M Gong
- Department of Pediatrics, People's Hospital of Quzhou, Quzhou 324002, China
| | - Z M Chen
- Department of Pulmonology, Children's Hospital, Zhejiang University School of Medicine, National Clinical Research Center for Child Health, Hangzhou 310052, China
| | - Y S Wang
- Department of Pulmonology, Children's Hospital, Zhejiang University School of Medicine, National Clinical Research Center for Child Health, Hangzhou 310052, China
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Tzovara A, Fedele T, Sarnthein J, Ledergerber D, Lin JJ, Knight RT. Predictable and unpredictable deviance detection in the human hippocampus and amygdala. Cereb Cortex 2024; 34:bhad532. [PMID: 38216528 PMCID: PMC10839835 DOI: 10.1093/cercor/bhad532] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2022] [Revised: 12/15/2023] [Accepted: 12/16/2023] [Indexed: 01/14/2024] Open
Abstract
Our brains extract structure from the environment and form predictions given past experience. Predictive circuits have been identified in wide-spread cortical regions. However, the contribution of medial temporal structures in predictions remains under-explored. The hippocampus underlies sequence detection and is sensitive to novel stimuli, sufficient to gain access to memory, while the amygdala to novelty. Yet, their electrophysiological profiles in detecting predictable and unpredictable deviant auditory events remain unknown. Here, we hypothesized that the hippocampus would be sensitive to predictability, while the amygdala to unexpected deviance. We presented epileptic patients undergoing presurgical monitoring with standard and deviant sounds, in predictable or unpredictable contexts. Onsets of auditory responses and unpredictable deviance effects were detected earlier in the temporal cortex compared with the amygdala and hippocampus. Deviance effects in 1-20 Hz local field potentials were detected in the lateral temporal cortex, irrespective of predictability. The amygdala showed stronger deviance in the unpredictable context. Low-frequency deviance responses in the hippocampus (1-8 Hz) were observed in the predictable but not in the unpredictable context. Our results reveal a distributed network underlying the generation of auditory predictions and suggest that the neural basis of sensory predictions and prediction error signals needs to be extended.
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Affiliation(s)
- Athina Tzovara
- Helen Wills Neuroscience Institute, University of California, 450 Li Ka Shing Biomedical Center, Berkeley, CA 94720-3370, United States
- Institute of Computer Science, University of Bern, Bern, Neubrückstrasse 3012, Switzerland
- Center for Experimental Neurology - Sleep Wake Epilepsy Center | NeuroTec, Department of Neurology, Inselspital, Bern University Hospital, University of Bern, Bern, Freiburgstrasse 3010, Switzerland
| | - Tommaso Fedele
- Neurosurgery Department, University Hospital Zürich, Zürich, Frauenklinikstrasse 8091, Switzerland
| | - Johannes Sarnthein
- Neurosurgery Department, University Hospital Zürich, Zürich, Frauenklinikstrasse 8091, Switzerland
| | - Debora Ledergerber
- Swiss Epilepsy Center, Klinik Lengg, Zürich, Bleulerstrasse 8008, Switzerland
| | - Jack J Lin
- Department of Neurology, University of California, Davis, Folsom Boulevard, Davis, CA 95816, USA
- The Center of Mind and Brain, University of California, Davis, Cousteau Pl, Davis, CA 95618, USA
| | - Robert T Knight
- Helen Wills Neuroscience Institute, University of California, 450 Li Ka Shing Biomedical Center, Berkeley, CA 94720-3370, United States
- Department of Psychology, University of California, Berkeley, CA 94720-1650, USA
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Zhang H, Skelin I, Ma S, Paff M, Mnatsakanyan L, Yassa MA, Knight RT, Lin JJ. Awake ripples enhance emotional memory encoding in the human brain. Nat Commun 2024; 15:215. [PMID: 38172140 PMCID: PMC10764865 DOI: 10.1038/s41467-023-44295-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2021] [Accepted: 12/07/2023] [Indexed: 01/05/2024] Open
Abstract
Enhanced memory for emotional experiences is hypothesized to depend on amygdala-hippocampal interactions during memory consolidation. Here we show using intracranial recordings from the human amygdala and the hippocampus during an emotional memory encoding and discrimination task increased awake ripples after encoding of emotional, compared to neutrally-valenced stimuli. Further, post-encoding ripple-locked stimulus similarity is predictive of later memory discrimination. Ripple-locked stimulus similarity appears earlier in the amygdala than in hippocampus and mutual information analysis confirms amygdala influence on hippocampal activity. Finally, the joint ripple-locked stimulus similarity in the amygdala and hippocampus is predictive of correct memory discrimination. These findings provide electrophysiological evidence that post-encoding ripples enhance memory for emotional events.
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Affiliation(s)
- Haoxin Zhang
- Department of Neurology, University of California Irvine, Irvine, 92603, CA, USA.
- Department of Biomedical Engineering, University of California Irvine, Irvine, 92603, CA, USA.
| | - Ivan Skelin
- Krembil Brain Institute, Toronto Western Hospital, Toronto, Ontario, M5T 1M8, Canada
- Department Center for Advancing Neurotechnological Innovation to Application, Toronto, Ontario, M5G 2A2, Canada
| | - Shiting Ma
- Department of Neurology, University of California Irvine, Irvine, 92603, CA, USA
| | - Michelle Paff
- Department of Neurosurgery, University of California Irvine, Irvine, 92603, CA, USA
| | - Lilit Mnatsakanyan
- Department of Neurology, University of California Irvine, Irvine, 92603, CA, USA
| | - Michael A Yassa
- Department of Neurology, University of California Irvine, Irvine, 92603, CA, USA
- Department of Neurobiology and Behavior, University of California Irvine, Irvine, 92697, CA, USA
- Department of Psychiatry and Human Behavior, University of California Irvine, Irvine, 92697, CA, USA
| | - Robert T Knight
- Department of Psychology, University of California Berkeley, Berkeley, 94720, CA, USA
- Helen Wills Neuroscience Institute, University of California Berkeley, Berkeley, 94720, CA, USA
| | - Jack J Lin
- Department of Neurology, School of Medicine, University of California Davis, Sacramento, 95817, CA, USA.
- Center for Mind and Brain, University of California Davis, Davis, 95618, CA, USA.
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5
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Gattas S, Larson MS, Mnatsakanyan L, Sen-Gupta I, Vadera S, Swindlehurst AL, Rapp PE, Lin JJ, Yassa MA. Theta mediated dynamics of human hippocampal-neocortical learning systems in memory formation and retrieval. Nat Commun 2023; 14:8505. [PMID: 38129375 PMCID: PMC10739909 DOI: 10.1038/s41467-023-44011-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2020] [Accepted: 11/23/2023] [Indexed: 12/23/2023] Open
Abstract
Episodic memory arises as a function of dynamic interactions between the hippocampus and the neocortex, yet the mechanisms have remained elusive. Here, using human intracranial recordings during a mnemonic discrimination task, we report that 4-5 Hz (theta) power is differentially recruited during discrimination vs. overgeneralization, and its phase supports hippocampal-neocortical when memories are being formed and correctly retrieved. Interactions were largely bidirectional, with small but significant net directional biases; a hippocampus-to-neocortex bias during acquisition of new information that was subsequently correctly discriminated, and a neocortex-to-hippocampus bias during accurate discrimination of new stimuli from similar previously learned stimuli. The 4-5 Hz rhythm may facilitate the initial stages of information acquisition by neocortex during learning and the recall of stored information from cortex during retrieval. Future work should further probe these dynamics across different types of tasks and stimuli and computational models may need to be expanded accordingly to accommodate these findings.
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Affiliation(s)
- Sandra Gattas
- Department of Electrical Engineering and Computer Science, School of Engineering, University of California, Irvine, CA, 92617, USA
- Center for the Neurobiology of Learning and Memory, University of California, Irvine, CA, 92697, USA
| | - Myra Sarai Larson
- Center for the Neurobiology of Learning and Memory, University of California, Irvine, CA, 92697, USA
- Department of Neurobiology and Behavior, School of Biological Sciences, University of California, Irvine, CA, 92697, USA
| | - Lilit Mnatsakanyan
- Department of Neurology, School of Medicine, University of California, Irvine, CA, 92697, USA
| | - Indranil Sen-Gupta
- Department of Neurology, School of Medicine, University of California, Irvine, CA, 92697, USA
| | - Sumeet Vadera
- Department of Neurological Surgery, School of Medicine, University of California, Irvine, CA, 92697, USA
| | - A Lee Swindlehurst
- Department of Electrical Engineering and Computer Science, School of Engineering, University of California, Irvine, CA, 92617, USA
| | - Paul E Rapp
- Department of Military & Emergency Medicine, Uniformed Services University, Bethesda, MD, 20814, USA
| | - Jack J Lin
- Center for the Neurobiology of Learning and Memory, University of California, Irvine, CA, 92697, USA
- Department of Neurology, School of Medicine, University of California, Irvine, CA, 92697, USA
| | - Michael A Yassa
- Center for the Neurobiology of Learning and Memory, University of California, Irvine, CA, 92697, USA.
- Department of Neurobiology and Behavior, School of Biological Sciences, University of California, Irvine, CA, 92697, USA.
- Department of Neurology, School of Medicine, University of California, Irvine, CA, 92697, USA.
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6
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Hoy CW, Quiroga-Martinez DR, Sandoval E, King-Stephens D, Laxer KD, Weber P, Lin JJ, Knight RT. Asymmetric coding of reward prediction errors in human insula and dorsomedial prefrontal cortex. Nat Commun 2023; 14:8520. [PMID: 38129440 PMCID: PMC10739882 DOI: 10.1038/s41467-023-44248-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2022] [Accepted: 12/05/2023] [Indexed: 12/23/2023] Open
Abstract
The signed value and unsigned salience of reward prediction errors (RPEs) are critical to understanding reinforcement learning (RL) and cognitive control. Dorsomedial prefrontal cortex (dMPFC) and insula (INS) are key regions for integrating reward and surprise information, but conflicting evidence for both signed and unsigned activity has led to multiple proposals for the nature of RPE representations in these brain areas. Recently developed RL models allow neurons to respond differently to positive and negative RPEs. Here, we use intracranially recorded high frequency activity (HFA) to test whether this flexible asymmetric coding strategy captures RPE coding diversity in human INS and dMPFC. At the region level, we found a bias towards positive RPEs in both areas which paralleled behavioral adaptation. At the local level, we found spatially interleaved neural populations responding to unsigned RPE salience and valence-specific positive and negative RPEs. Furthermore, directional connectivity estimates revealed a leading role of INS in communicating positive and unsigned RPEs to dMPFC. These findings support asymmetric coding across distinct but intermingled neural populations as a core principle of RPE processing and inform theories of the role of dMPFC and INS in RL and cognitive control.
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Affiliation(s)
- Colin W Hoy
- Department of Neurology, University of California, San Francisco, San Francisco, CA, USA.
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA.
| | - David R Quiroga-Martinez
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA
- Center for Music in the Brain, Aarhus University & The Royal Academy of Music, Aarhus, Denmark
| | - Eduardo Sandoval
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA
| | - David King-Stephens
- Department of Neurology and Neurosurgery, California Pacific Medical Center, San Francisco, CA, USA
- Department of Neurology, Yale School of Medicine, New Haven, CT, USA
| | - Kenneth D Laxer
- Department of Neurology and Neurosurgery, California Pacific Medical Center, San Francisco, CA, USA
| | - Peter Weber
- Department of Neurology and Neurosurgery, California Pacific Medical Center, San Francisco, CA, USA
| | - Jack J Lin
- Department of Neurology, University of California, Davis, Davis, CA, USA
- Center for Mind and Brain, University of California, Davis, Davis, CA, USA
| | - Robert T Knight
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA
- Department of Psychology, University of California, Berkeley, Berkeley, CA, USA
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Llorens A, Bellier L, Blenkmann AO, Ivanovic J, Larsson PG, Lin JJ, Endestad T, Solbakk AK, Knight RT. Decision and response monitoring during working memory are sequentially represented in the human insula. iScience 2023; 26:107653. [PMID: 37674986 PMCID: PMC10477069 DOI: 10.1016/j.isci.2023.107653] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2022] [Revised: 06/05/2023] [Accepted: 07/11/2023] [Indexed: 09/08/2023] Open
Abstract
Emerging research supports a role of the insula in human cognition. Here, we used intracranial EEG to investigate the spatiotemporal dynamics in the insula during a verbal working memory (vWM) task. We found robust effects for theta, beta, and high frequency activity (HFA) during probe presentation requiring a decision. Theta band activity showed differential involvement across left and right insulae while sequential HFA modulations were observed along the anteroposterior axis. HFA in anterior insula tracked decision making and subsequent HFA was observed in posterior insula after the behavioral response. Our results provide electrophysiological evidence of engagement of different insula subregions in both decision-making and response monitoring during vWM and expand our knowledge of the role of the insula in complex human behavior.
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Affiliation(s)
- Anaïs Llorens
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA
- Université de Franche-Comté, SUPMICROTECH, CNRS, Institut FEMTO-ST, 25000 Besançon, France
- Université Paris Cité, Institute of Psychiatry and Neuroscience of Paris (IPNP), INSERM U1266, Team TURC, 75014 Paris, France
| | - Ludovic Bellier
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA
| | - Alejandro O. Blenkmann
- Department of Psychology, University of Oslo, Oslo, Norway
- RITMO Center for Interdisciplinary Studies in Rhythm, Time and Motion, University of Oslo, Oslo, Norway
| | | | - Pål G. Larsson
- Department of Neurosurgery, Oslo University Hospital, Oslo, Norway
| | - Jack J. Lin
- Department of Neurology and Center for Mind and Brain, University of California, Davis, Davis, CA, USA
| | - Tor Endestad
- Department of Psychology, University of Oslo, Oslo, Norway
- RITMO Center for Interdisciplinary Studies in Rhythm, Time and Motion, University of Oslo, Oslo, Norway
- Department of Neuropsychology, Helgeland Hospital, Mosjøen, Norway
| | - Anne-Kristin Solbakk
- Department of Neurosurgery, Oslo University Hospital, Oslo, Norway
- Department of Psychology, University of Oslo, Oslo, Norway
- RITMO Center for Interdisciplinary Studies in Rhythm, Time and Motion, University of Oslo, Oslo, Norway
- Department of Neuropsychology, Helgeland Hospital, Mosjøen, Norway
| | - Robert T. Knight
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA
- Department of Psychology, University of California, Berkeley, Berkeley, CA, USA
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8
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Lin JJ, Gong WW, Lu F, Zhou XY, Fang L, Xu CX, Pan J, Chen XY, Dai PY, Zhong JM. [Spatial autocorrelation and related factors of stroke mortality in Zhejiang Province based on spatial panel model in 2015-2020]. Zhonghua Liu Xing Bing Xue Za Zhi 2023; 44:1616-1621. [PMID: 37875450 DOI: 10.3760/cma.j.cn112338-20230316-00154] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Subscribe] [Scholar Register] [Indexed: 10/26/2023]
Abstract
Objective: To explore the spatial autocorrelation and macro influencing factors of stroke mortality in Zhejiang Province in 2015-2020 and provide a scientific basis for stroke prevention and control strategy. Methods: The data on stroke death were obtained from Zhejiang Chronic Disease Surveillance System. The spatial distribution of stroke mortality was explored by mapping and spatial autocorrelation analysis. The spatial panel model analyzed the correlation between stroke mortality and socioeconomic and healthcare factors. Results: From 2015 to 2020, the average stroke mortality was 68.38/100 thousand. The standard mortality of stroke was high in the areas of east and low in the west, high in the south and low in the north. Moreover, positive spatial autocorrelation was observed (Moran's I=0.274-0.390, P<0.001). Standard mortality of stroke was negatively associated with per capita gross domestic product (GDP) (β=-0.370, P<0.001), per capita health expenditure (β=-0.116, P=0.021), number of beds per thousand population (β=-0.161, P=0.030). Standard mortality of ischemic stroke was negatively associated with per capita GDP (β=-0.310, P=0.002) and standard management rate of hypertension (β=-0.462, P=0.011). Standard mortality of hemorrhagic stroke was negatively associated with per capita GDP (β=-0.481, P<0.001), per capita health expenditure (β=-0.184, P=0.001), number of beds per thousand population (β=-0.288, P=0.001) and standard management rate of hypertension (β=-0.336, P=0.029). Conclusions: A positive spatial correlation existed between stroke mortality in Zhejiang Province in 2015-2020. We must focus more on preventing and controlling strokes in relatively backward economic areas. Moreover, to reduce the mortality of stroke, increasing the investment of government medical and health funds, optimizing the allocation of medical resources, and improving the standard management rate of hypertension are important measures.
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Affiliation(s)
- J J Lin
- Department of Chronic and Non-communicable Disease Prevention and Control, Zhejiang Provincial Center for Disease Control and Prevention, Hangzhou 310051, China
| | - W W Gong
- Department of Chronic and Non-communicable Disease Prevention and Control, Zhejiang Provincial Center for Disease Control and Prevention, Hangzhou 310051, China
| | - F Lu
- Department of Chronic and Non-communicable Disease Prevention and Control, Zhejiang Provincial Center for Disease Control and Prevention, Hangzhou 310051, China
| | - X Y Zhou
- Department of Chronic and Non-communicable Disease Prevention and Control, Zhejiang Provincial Center for Disease Control and Prevention, Hangzhou 310051, China
| | - L Fang
- Department of Chronic and Non-communicable Disease Prevention and Control, Zhejiang Provincial Center for Disease Control and Prevention, Hangzhou 310051, China
| | - C X Xu
- Department of Chronic and Non-communicable Disease Prevention and Control, Zhejiang Provincial Center for Disease Control and Prevention, Hangzhou 310051, China
| | - J Pan
- Department of Chronic and Non-communicable Disease Prevention and Control, Zhejiang Provincial Center for Disease Control and Prevention, Hangzhou 310051, China
| | - X Y Chen
- Department of Chronic and Non-communicable Disease Prevention and Control, Zhejiang Provincial Center for Disease Control and Prevention, Hangzhou 310051, China
| | - P Y Dai
- Department of Chronic and Non-communicable Disease Prevention and Control, Zhejiang Provincial Center for Disease Control and Prevention, Hangzhou 310051, China
| | - J M Zhong
- Department of Chronic and Non-communicable Disease Prevention and Control, Zhejiang Provincial Center for Disease Control and Prevention, Hangzhou 310051, China
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9
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Jafarpour A, Lin JJ, Knight RT, Buffalo EA. Multiple memory systems for efficient temporal order memory. Hippocampus 2023; 33:1154-1157. [PMID: 37365860 PMCID: PMC10543450 DOI: 10.1002/hipo.23550] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2022] [Revised: 05/07/2023] [Accepted: 05/09/2023] [Indexed: 06/28/2023]
Abstract
We report distinct contributions of multiple memory systems to the retrieval of the temporal order of events. The neural dynamics related to the retrieval of movie scenes revealed that recalling the temporal order of close events elevates hippocampal theta power, like that observed for recalling close spatial relationships. In contrast, recalling far events increases beta power in the orbitofrontal cortex, reflecting recall based on the overall movie structure.
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Affiliation(s)
- Anna Jafarpour
- University of Washington School of Medicine, Department of Physiology and Biophysics, Seattle, WA, USA
| | - Jack J. Lin
- Department of Neurology and Center for Mind and Brain, University of California, Davis, CA, USA
| | - Robert T. Knight
- Helen Wills Neuroscience Institute, University of California, Berkeley, CA, USA
- Department of Psychology, University of California, Berkeley, CA, USA
| | - Elizabeth A. Buffalo
- University of Washington School of Medicine, Department of Physiology and Biophysics, Seattle, WA, USA
- Washington National Primate Research Center, Seattle, WA, USA
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10
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Gattas S, Larson MS, Mnatsakanyan L, Sen-Gupta I, Vadera S, Swindlehurst L, Rapp PE, Lin JJ, Yassa MA. Theta mediated dynamics of human hippocampal-neocortical learning systems in memory formation and retrieval. bioRxiv 2023:2023.09.20.558688. [PMID: 37790541 PMCID: PMC10542525 DOI: 10.1101/2023.09.20.558688] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/05/2023]
Abstract
Episodic memory arises as a function of dynamic interactions between the hippocampus and the neocortex, yet the mechanisms have remained elusive. Here, using human intracranial recordings during a mnemonic discrimination task, we report that 4-5 Hz (theta) power is differentially recruited during discrimination vs. overgeneralization, and its phase supports hippocampal-neocortical when memories are being formed and correctly retrieved. Interactions were largely bidirectional, with small but significant net directional biases; a hippocampus-to-neocortex bias during acquisition of new information that was subsequently correctly discriminated, and a neocortex-to-hippocampus bias during accurate discrimination of new stimuli from similar previously learned stimuli. The 4-5 Hz rhythm may facilitate the initial stages of information acquisition by neocortex during learning and the recall of stored information from cortex during retrieval. Future work should further probe these dynamics across different types of tasks and stimuli and computational models may need to be expanded accordingly to accommodate these findings.
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Affiliation(s)
- Sandra Gattas
- Department of Electrical Engineering and Computer Science, School of Engineering, University of California, Irvine, Irvine, CA, 92617, USA
- Center for the Neurobiology of Learning and Memory, University of California, Irvine, Irvine, California, 92697, USA
| | - Myra Sarai Larson
- Center for the Neurobiology of Learning and Memory, University of California, Irvine, Irvine, California, 92697, USA
- Department of Neurobiology and Behavior, School of Biological Sciences, University of California, Irvine, Irvine, CA, 92697, USA
| | - Lilit Mnatsakanyan
- Department of Neurology, School of Medicine, University of California, Irvine, CA, 92697, USA
| | - Indranil Sen-Gupta
- Department of Neurology, School of Medicine, University of California, Irvine, CA, 92697, USA
| | - Sumeet Vadera
- Department of Neurological Surgery, School of Medicine, University of California, Irvine, Irvine, CA, 92697, USA
| | - Lee Swindlehurst
- Department of Electrical Engineering and Computer Science, School of Engineering, University of California, Irvine, Irvine, CA, 92617, USA
| | - Paul E. Rapp
- Department of Military & Emergency Medicine, Uniformed Services University, Bethesda, MD, 20814, USA
| | - Jack J. Lin
- Center for the Neurobiology of Learning and Memory, University of California, Irvine, Irvine, California, 92697, USA
- Department of Neurology, School of Medicine, University of California, Irvine, CA, 92697, USA
| | - Michael A. Yassa
- Center for the Neurobiology of Learning and Memory, University of California, Irvine, Irvine, California, 92697, USA
- Department of Neurobiology and Behavior, School of Biological Sciences, University of California, Irvine, Irvine, CA, 92697, USA
- Department of Neurology, School of Medicine, University of California, Irvine, CA, 92697, USA
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11
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Ozon M, Tumashevich K, Lin JJ, Prisle NL. Inversion model for extracting chemically resolved depth profiles across liquid interfaces of various configurations from XPS data: PROPHESY. J Synchrotron Radiat 2023; 30:941-961. [PMID: 37610342 PMCID: PMC10481271 DOI: 10.1107/s1600577523006124] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2023] [Accepted: 07/12/2023] [Indexed: 08/24/2023]
Abstract
PROPHESY, a technique for the reconstruction of surface-depth profiles from X-ray photoelectron spectroscopy data, is introduced. The inversion methodology is based on a Bayesian framework and primal-dual convex optimization. The acquisition model is developed for several geometries representing different sample types: plane (bulk sample), cylinder (liquid microjet) and sphere (droplet). The methodology is tested and characterized with respect to simulated data as a proof of concept. Possible limitations of the method due to uncertainty in the attenuation length of the photo-emitted electron are illustrated.
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Affiliation(s)
- Matthew Ozon
- Center for Atmospheric Research, University of Oulu, PO Box 4500, Finland
| | | | - Jack J. Lin
- Center for Atmospheric Research, University of Oulu, PO Box 4500, Finland
| | - Nønne L. Prisle
- Center for Atmospheric Research, University of Oulu, PO Box 4500, Finland
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12
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Marciano D, Staveland BR, Lin JJ, Saez I, Hsu M, Knight RT. Electrophysiological signatures of inequity-dependent reward encoding in the human OFC. Cell Rep 2023; 42:112865. [PMID: 37494185 DOI: 10.1016/j.celrep.2023.112865] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2022] [Revised: 06/12/2023] [Accepted: 07/10/2023] [Indexed: 07/28/2023] Open
Abstract
Social decision making requires the integration of reward valuation and social cognition systems, both dependent on the orbitofrontal cortex (OFC). How these two OFC functions interact is largely unknown. We recorded intracranial activity from the OFC of ten patients making choices in a social context where reward inequity with a social counterpart varied and could be either advantageous or disadvantageous. We find that OFC high-frequency activity (HFA; 70-150 Hz) encodes self-reward, consistent with previous reports. We also observe encoding of the social counterpart's reward, as well as the type of inequity being experienced. Additionally, we find evidence of inequity-dependent reward encoding: depending on the type of inequity, electrodes rapidly and reversibly switch between different reward-encoding profiles. These results provide direct evidence for encoding of self- and other rewards in the human OFC and highlight the dynamic nature of encoding in the OFC as a function of social context.
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Affiliation(s)
- Deborah Marciano
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA 94720, USA; Haas School of Business, University of California, Berkeley, Berkeley, CA 94720, USA
| | - Brooke R Staveland
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA 94720, USA
| | - Jack J Lin
- Department of Neurology, University of California, Davis, Davis, CA 95616, USA; Center for Mind and Brain, University of California, Davis, Davis, CA 95616, USA
| | - Ignacio Saez
- Departments of Neuroscience, Neurosurgery and Neurology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
| | - Ming Hsu
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA 94720, USA; Haas School of Business, University of California, Berkeley, Berkeley, CA 94720, USA.
| | - Robert T Knight
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA 94720, USA; Department of Psychology, University of California, Berkeley, Berkeley, CA 94720, USA.
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13
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Lendner JD, Niethard N, Mander BA, van Schalkwijk FJ, Schuh-Hofer S, Schmidt H, Knight RT, Born J, Walker MP, Lin JJ, Helfrich RF. Human REM sleep recalibrates neural activity in support of memory formation. Sci Adv 2023; 9:eadj1895. [PMID: 37624898 PMCID: PMC10456851 DOI: 10.1126/sciadv.adj1895] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2023] [Accepted: 07/25/2023] [Indexed: 08/27/2023]
Abstract
The proposed mechanisms of sleep-dependent memory consolidation involve the overnight regulation of neural activity at both synaptic and whole-network levels. Now, there is a lack of in vivo data in humans elucidating if, and how, sleep and its varied stages balance neural activity, and if such recalibration benefits memory. We combined electrophysiology with in vivo two-photon calcium imaging in rodents as well as intracranial and scalp electroencephalography (EEG) in humans to reveal a key role for non-oscillatory brain activity during rapid eye movement (REM) sleep to mediate sleep-dependent recalibration of neural population dynamics. The extent of this REM sleep recalibration predicted the success of overnight memory consolidation, expressly the modulation of hippocampal-neocortical activity, favoring remembering rather than forgetting. The findings describe a non-oscillatory mechanism how human REM sleep modulates neural population activity to enhance long-term memory.
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Affiliation(s)
- Janna D. Lendner
- Hertie Institute for Clinical Brain Research, Center for Neurology, University Medical Center Tübingen, Hoppe-Seyler-Str 3, 72076 Tübingen, Germany
- Department of Anesthesiology and Intensive Care Medicine, University Medical Center Tübingen, Hoppe-Seyler-Str 3, 72076 Tübingen, Germany
| | - Niels Niethard
- Institute of Medical Psychology and Behavioral Neurobiology, University of Tübingen, Tübingen 72076, Germany
| | - Bryce A. Mander
- Department of Psychiatry and Human Behavior, UC Irvine, 101 The City Dr, Orange, CA 92868, USA
| | - Frank J. van Schalkwijk
- Hertie Institute for Clinical Brain Research, Center for Neurology, University Medical Center Tübingen, Hoppe-Seyler-Str 3, 72076 Tübingen, Germany
| | - Sigrid Schuh-Hofer
- Department of Neurophysiology, University Medical Center Mannheim, Ludolf-Krehl-Str. 13-17, 68167 Mannheim, Germany
- Department of Neurology and Epileptology, University Medical Center Tübingen, Hoppe-Seyler-Str 3, 72076 Tübingen, Germany
| | - Hannah Schmidt
- Department of Neurophysiology, University Medical Center Mannheim, Ludolf-Krehl-Str. 13-17, 68167 Mannheim, Germany
| | - Robert T. Knight
- Helen Wills Neuroscience Institute, UC Berkeley, 130 Barker Hall, CA 94720, USA
- Department of Psychology, UC Berkeley, 2121 Berkeley Way, CA 94720, USA
| | - Jan Born
- Institute of Medical Psychology and Behavioral Neurobiology, University of Tübingen, Tübingen 72076, Germany
- Center for Integrative Neuroscience, University of Tübingen, Tübingen 72076, Germany
- German Center for Diabetes Research (DZD), Institute for Diabetes Research and Metabolic Diseases of the Helmholtz Center Munich at the University of Tübingen (IDM), Tübingen 72076, Germany
| | - Matthew P. Walker
- Helen Wills Neuroscience Institute, UC Berkeley, 130 Barker Hall, CA 94720, USA
- Department of Psychology, UC Berkeley, 2121 Berkeley Way, CA 94720, USA
| | - Jack J. Lin
- Department of Neurology, UC Davis, 3160 Folsom Blvd., Sacramento, CA 95816, USA
- Center for Mind and Brain, UC Davis, 267 Cousteau Pl, Davis, CA 95618, USA
| | - Randolph F. Helfrich
- Hertie Institute for Clinical Brain Research, Center for Neurology, University Medical Center Tübingen, Hoppe-Seyler-Str 3, 72076 Tübingen, Germany
- Department of Neurology and Epileptology, University Medical Center Tübingen, Hoppe-Seyler-Str 3, 72076 Tübingen, Germany
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14
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van Schalkwijk FJ, Weber J, Hahn MA, Lendner JD, Inostroza M, Lin JJ, Helfrich RF. An evolutionary conserved division-of-labor between archicortical and neocortical ripples organizes information transfer during sleep. Prog Neurobiol 2023:102485. [PMID: 37353109 DOI: 10.1016/j.pneurobio.2023.102485] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2022] [Revised: 06/02/2023] [Accepted: 06/15/2023] [Indexed: 06/25/2023]
Abstract
Systems-level memory consolidation during sleep depends on the temporally precise interplay between cardinal sleep oscillations. Specifically, hippocampal ripples constitute a key substrate of the hippocampal-neocortical dialogue underlying memory formation. Recently, it became evident that ripples are not unique to archicortex, but constitute a wide-spread neocortical phenomenon. To date, little is known about the morphological similarities between archi- and neocortical ripples. Moreover, it remains undetermined if neocortical ripples fulfill distinct functional roles. Leveraging intracranial recordings from the human medial temporal lobe (MTL) and neocortex during sleep, our results reveal region-specific functional specializations, albeit a near-uniform morphology. While MTL ripples synchronize the memory network to trigger directional MTL-to-neocortical information flow, neocortical ripples reduce information flow to minimize interference. At the population level, MTL ripples confined population dynamics to a low-dimensional subspace, while neocortical ripples diversified the population response; thus, constituting an effective mechanism to functionally uncouple the MTL-neocortical network. Critically, we replicated the key findings in rodents, where the same division-of-labor between archi- and neocortical ripples was evident. In sum, these results uncover an evolutionary preserved mechanism where the precisely coordinated interplay between MTL and neocortical ripples temporally segregates MTL information transfer from subsequent neocortical processing during sleep.
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Affiliation(s)
- Frank J van Schalkwijk
- Hertie-Institute for Clinical Brain Research, Center for Neurology, University Medical Center Tübingen, Otfried-Müller Str. 27, 72076 Tübingen, Germany.
| | - Jan Weber
- Hertie-Institute for Clinical Brain Research, Center for Neurology, University Medical Center Tübingen, Otfried-Müller Str. 27, 72076 Tübingen, Germany; International Max Planck Research School for the Mechanisms of Mental Function and Dysfunction, University of Tübingen, Germany.
| | - Michael A Hahn
- Hertie-Institute for Clinical Brain Research, Center for Neurology, University Medical Center Tübingen, Otfried-Müller Str. 27, 72076 Tübingen, Germany.
| | - Janna D Lendner
- Hertie-Institute for Clinical Brain Research, Center for Neurology, University Medical Center Tübingen, Otfried-Müller Str. 27, 72076 Tübingen, Germany; Department of Anesthesiology and Intensive Care Medicine, University Medical Center Tübingen; Hoppe-Seyler-Str 3, 72076 Tübingen, Germany.
| | - Marion Inostroza
- Institute of Medical Psychology and Behavioral Neurobiology, University of Tübingen, Tübingen, Germany.
| | - Jack J Lin
- Department of Neurology, University of California, Davis, 4860 Y St., Sacramento, CA 95817, USA; The Center for Mind and Brain, University of California, Davis, Davis, CA 95618, USA.
| | - Randolph F Helfrich
- Hertie-Institute for Clinical Brain Research, Center for Neurology, University Medical Center Tübingen, Otfried-Müller Str. 27, 72076 Tübingen, Germany.
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15
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Cho H, Fonken YM, Adamek M, Jimenez R, Lin JJ, Schalk G, Knight RT, Brunner P. Unexpected sound omissions are signaled in human posterior superior temporal gyrus: an intracranial study. Cereb Cortex 2023:7190933. [PMID: 37280730 DOI: 10.1093/cercor/bhad155] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2019] [Revised: 04/11/2023] [Accepted: 04/11/2023] [Indexed: 06/08/2023] Open
Abstract
Context modulates sensory neural activations enhancing perceptual and behavioral performance and reducing prediction errors. However, the mechanism of when and where these high-level expectations act on sensory processing is unclear. Here, we isolate the effect of expectation absent of any auditory evoked activity by assessing the response to omitted expected sounds. Electrocorticographic signals were recorded directly from subdural electrode grids placed over the superior temporal gyrus (STG). Subjects listened to a predictable sequence of syllables, with some infrequently omitted. We found high-frequency band activity (HFA, 70-170 Hz) in response to omissions, which overlapped with a posterior subset of auditory-active electrodes in STG. Heard syllables could be distinguishable reliably from STG, but not the identity of the omitted stimulus. Both omission- and target-detection responses were also observed in the prefrontal cortex. We propose that the posterior STG is central for implementing predictions in the auditory environment. HFA omission responses in this region appear to index mismatch-signaling or salience detection processes.
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Affiliation(s)
- Hohyun Cho
- Department of Neurosurgery, Washington University School of Medicine in Saint Louis, St. Louis, MO 63110, USA
- National Center for Adaptive Neurotechnologies, St. Louis, MO 63110, USA
| | - Yvonne M Fonken
- Department of Psychology and the Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA 94720, USA
- TNO Human Factors Research Institute, Soesterberg 3769 DE, Netherlands
| | - Markus Adamek
- Department of Neurosurgery, Washington University School of Medicine in Saint Louis, St. Louis, MO 63110, USA
- National Center for Adaptive Neurotechnologies, St. Louis, MO 63110, USA
| | - Richard Jimenez
- Department of Psychology and the Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA 94720, USA
| | - Jack J Lin
- Department of Neurology and Center for Mind and Brain, University of California, Davis, Davis, CA 95618, USA
| | - Gerwin Schalk
- Frontier Lab for Applied Neurotechnology, Tianqiao and Chrissy Chen Institute, Shanghai 201203, People's Republic of China
- Department of Neurosurgery, Fudan University/Huashan Hospital, Shanghai 200031, People's Republic of China
| | - Robert T Knight
- Department of Psychology and the Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA 94720, USA
| | - Peter Brunner
- Department of Neurosurgery, Washington University School of Medicine in Saint Louis, St. Louis, MO 63110, USA
- National Center for Adaptive Neurotechnologies, St. Louis, MO 63110, USA
- Department of Neurology, Albany Medical College, Albany, NY 12208, USA
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16
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Johnson EL, Lin JJ, King-Stephens D, Weber PB, Laxer KD, Saez I, Girgis F, D'Esposito M, Knight RT, Badre D. A rapid theta network mechanism for flexible information encoding. Nat Commun 2023; 14:2872. [PMID: 37208373 DOI: 10.1038/s41467-023-38574-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2022] [Accepted: 05/08/2023] [Indexed: 05/21/2023] Open
Abstract
Flexible behavior requires gating mechanisms that encode only task-relevant information in working memory. Extant literature supports a theoretical division of labor whereby lateral frontoparietal interactions underlie information maintenance and the striatum enacts the gate. Here, we reveal neocortical gating mechanisms in intracranial EEG patients by identifying rapid, within-trial changes in regional and inter-regional activities that predict subsequent behavioral outputs. Results first demonstrate information accumulation mechanisms that extend prior fMRI (i.e., regional high-frequency activity) and EEG evidence (inter-regional theta synchrony) of distributed neocortical networks in working memory. Second, results demonstrate that rapid changes in theta synchrony, reflected in changing patterns of default mode network connectivity, support filtering. Graph theoretical analyses further linked filtering in task-relevant information and filtering out irrelevant information to dorsal and ventral attention networks, respectively. Results establish a rapid neocortical theta network mechanism for flexible information encoding, a role previously attributed to the striatum.
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Affiliation(s)
- Elizabeth L Johnson
- Departments of Medical Social Sciences and Pediatrics, Northwestern University, Chicago, IL, USA.
| | - Jack J Lin
- Department of Neurology and Center for Mind and Brain, University of California, Davis, CA, USA
| | - David King-Stephens
- Department of Neurology and Neurosurgery, California Pacific Medical Center, San Francisco, CA, USA
- Department of Neurology, Yale School of Medicine, New Haven, CT, USA
| | - Peter B Weber
- Department of Neurology and Neurosurgery, California Pacific Medical Center, San Francisco, CA, USA
| | - Kenneth D Laxer
- Department of Neurology and Neurosurgery, California Pacific Medical Center, San Francisco, CA, USA
| | - Ignacio Saez
- Department of Neurological Surgery, University of California, Davis, CA, USA
- Departments of Neuroscience, Neurosurgery, and Neurology, Ichan School of Medicine at Mt. Sinai, New York, NY, USA
| | - Fady Girgis
- Department of Neurological Surgery, University of California, Davis, CA, USA
- Department of Clinical Neurosciences, University of Calgary, Calgary, AB, Canada
| | - Mark D'Esposito
- Helen Wills Neuroscience Institute and Department of Psychology, University of California, Berkeley, CA, USA
| | - Robert T Knight
- Helen Wills Neuroscience Institute and Department of Psychology, University of California, Berkeley, CA, USA
| | - David Badre
- Department of Cognitive, Linguistic, and Psychological Sciences, and Carney Institute for Brain Science, Brown University, Providence, RI, USA.
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17
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Blenkmann AO, Leske SL, Llorens A, Lin JJ, Chang E, Brunner P, Schalk G, Ivanovic J, Larsson PG, Knight RT, Endestad T, Solbakk AK. Anatomical registration of intracranial electrodes. Robust model-based localization and deformable smooth brain-shift compensation methods. bioRxiv 2023:2023.05.08.539503. [PMID: 37214984 PMCID: PMC10197594 DOI: 10.1101/2023.05.08.539503] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Precise electrode localization is important for maximizing the utility of intracranial EEG data. Electrodes are typically localized from post-implantation CT artifacts, but algorithms can fail due to low signal-to-noise ratio, unrelated artifacts, or high-density electrode arrays. Minimizing these errors usually requires time-consuming visual localization and can still result in inaccurate localizations. In addition, surgical implantation of grids and strips typically introduces non-linear brain deformations, which result in anatomical registration errors when post-implantation CT images are fused with the pre-implantation MRI images. Several projection methods are currently available, but they either fail to produce smooth solutions or do not account for brain deformations. To address these shortcomings, we propose two novel algorithms for the anatomical registration of intracranial electrodes that are almost fully automatic and provide highly accurate results. We first present GridFit, an algorithm that simultaneously localizes all contacts in grids, strips, or depth arrays by fitting flexible models to the electrodes' CT artifacts. We observed localization errors of less than one millimeter (below 8% relative to the inter-electrode distance) and robust performance under the presence of noise, unrelated artifacts, and high-density implants when we ran ~6000 simulated scenarios. Furthermore, we validated the method with real data from 20 intracranial patients. As a second registration step, we introduce CEPA, a brain-shift compensation algorithm that combines orthogonal-based projections, spring-mesh models, and spatial regularization constraints. When tested with real data from 15 patients, anatomical registration errors were smaller than those obtained for well-established alternatives. Additionally, CEPA accounted simultaneously for simple mechanical deformation principles, which is not possible with other available methods. Inter-electrode distances of projected coordinates smoothly changed across neighbor electrodes, while changes in inter-electrode distances linearly increased with projection distance. Moreover, in an additional validation procedure, we found that modeling resting-state high-frequency activity (75-145 Hz ) in five patients further supported our new algorithm. Together, GridFit and CEPA constitute a versatile set of tools for the registration of subdural grid, strip, and depth electrode coordinates that provide highly accurate results even in the most challenging implantation scenarios. The methods presented here are implemented in the iElectrodes open-source toolbox, making their use simple, accessible, and straightforward to integrate with other popular toolboxes used for analyzing electrophysiological data.
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Affiliation(s)
- Alejandro Omar Blenkmann
- Department of Psychology, University of Oslo, Norway
- RITMO Centre for Interdisciplinary Studies in Rhythm, Time, and Motion, University of Oslo, Norway
| | - Sabine Liliana Leske
- Department of Musicology, University of Oslo, Norway
- RITMO Centre for Interdisciplinary Studies in Rhythm, Time, and Motion, University of Oslo, Norway
| | - Anaïs Llorens
- Department of Psychology, University of Oslo, Norway
- Department of Psychology and the Helen Wills Neuroscience Institute, University of California, Berkeley, USA
| | - Jack J. Lin
- Department of Neurology and Center for Mind and Brain, University of California, Davis, USA
| | - Edward Chang
- Department of Neurological Surgery, University of California, San Francisco, USA
| | - Peter Brunner
- Department of Neurology, Albany Medical College, Albany, NY, USA
- National Center for Adaptive Neurotechnologies, Albany, NY, USA
| | - Gerwin Schalk
- Department of Neurology, Albany Medical College, Albany, NY, USA
- National Center for Adaptive Neurotechnologies, Albany, NY, USA
- Tianqiao and Chrissy Chen Institute, Chen Frontier Lab for Applied Neurotechnology, Shanghai, China
- Fudan University/Huashan Hospital, Department of Neurosurgery, Shanghai, China
| | | | | | - Robert Thomas Knight
- Department of Psychology and the Helen Wills Neuroscience Institute, University of California, Berkeley, USA
| | - Tor Endestad
- Department of Psychology, University of Oslo, Norway
- RITMO Centre for Interdisciplinary Studies in Rhythm, Time, and Motion, University of Oslo, Norway
- Department of Neuropsychology, Helgeland Hospital, Mosjøen, Norway
| | - Anne-Kristin Solbakk
- Department of Psychology, University of Oslo, Norway
- RITMO Centre for Interdisciplinary Studies in Rhythm, Time, and Motion, University of Oslo, Norway
- Department of Neurosurgery, Oslo University Hospital, Norway
- Department of Neuropsychology, Helgeland Hospital, Mosjøen, Norway
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18
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Dreyer AM, Michalke L, Perry A, Chang EF, Lin JJ, Knight RT, Rieger JW. Grasp-specific high-frequency broadband mirror neuron activity during reach-and-grasp movements in humans. Cereb Cortex 2023; 33:6291-6298. [PMID: 36562997 PMCID: PMC10183732 DOI: 10.1093/cercor/bhac504] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2021] [Revised: 11/30/2022] [Accepted: 12/01/2022] [Indexed: 12/24/2022] Open
Abstract
Broadly congruent mirror neurons, responding to any grasp movement, and strictly congruent mirror neurons, responding only to specific grasp movements, have been reported in single-cell studies with primates. Delineating grasp properties in humans is essential to understand the human mirror neuron system with implications for behavior and social cognition. We analyzed electrocorticography data from a natural reach-and-grasp movement observation and delayed imitation task with 3 different natural grasp types of everyday objects. We focused on the classification of grasp types from high-frequency broadband mirror activation patterns found in classic mirror system areas, including sensorimotor, supplementary motor, inferior frontal, and parietal cortices. Classification of grasp types was successful during movement observation and execution intervals but not during movement retention. Our grasp type classification from combined and single mirror electrodes provides evidence for grasp-congruent activity in the human mirror neuron system potentially arising from strictly congruent mirror neurons.
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Affiliation(s)
- Alexander M Dreyer
- Department of Psychology, Carl von Ossietzky University Oldenburg, Oldenburg 26129, Germany
| | - Leo Michalke
- Department of Psychology, Carl von Ossietzky University Oldenburg, Oldenburg 26129, Germany
| | - Anat Perry
- Department of Psychology, Hebrew University of Jerusalem, Jerusalem 91905, Israel
| | - Edward F Chang
- Department of Neurological Surgery, University of California San Francisco, San Francisco, CA 94143, United States
| | - Jack J Lin
- Department of Biomedical Engineering and the Comprehensive Epilepsy Program, Department of Neurology, University of California, Irvine, CA 92868, United States
| | - Robert T Knight
- Department of Psychology and the Helen Wills Neuroscience Institute, University of California, Berkeley, CA 94720, United States
| | - Jochem W Rieger
- Department of Psychology, Carl von Ossietzky University Oldenburg, Oldenburg 26129, Germany
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Rissler J, Preger C, Eriksson AC, Lin JJ, Prisle NL, Svenningsson B. Correction to "Missed Evaporation from Atmospherically Relevant Inorganic Mixtures Confounds Experimental Aerosol Studies". Environ Sci Technol 2023; 57:7101. [PMID: 37083354 PMCID: PMC10157881 DOI: 10.1021/acs.est.3c02233] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
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Rissler J, Preger C, Eriksson AC, Lin JJ, Prisle NL, Svenningsson B. Missed Evaporation from Atmospherically Relevant Inorganic Mixtures Confounds Experimental Aerosol Studies. Environ Sci Technol 2023; 57:2706-2714. [PMID: 36758144 PMCID: PMC9948290 DOI: 10.1021/acs.est.2c06545] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/08/2022] [Revised: 01/23/2023] [Accepted: 01/23/2023] [Indexed: 06/18/2023]
Abstract
Sea salt aerosol particles are highly abundant in the atmosphere and play important roles in the global radiative balance. After influence from continental air, they are typically composed of Na+, Cl-, NH4+, and SO42- and organics. Analogous particle systems are often studied in laboratory settings by atomizing and drying particles from a solution. Here, we present evidence that such laboratory studies may be consistently biased in that they neglect losses of solutes to the gas phase. We present experimental evidence from a hygroscopic tandem differential mobility analyzer and an aerosol mass spectrometer, further supported by thermodynamic modeling. We show that, at normally prevailing laboratory aerosol mass concentrations, for mixtures of NaCl and (NH4)2SO4, a significant portion of the Cl- and NH4+ ions are lost to the gas phase, in some cases, leaving mainly Na2SO4 in the dry particles. Not considering losses of solutes to the gas phase during experimental studies will likely result in misinterpretation of the data. One example of such data is that from particle water uptake experiments. This may bias the explanatory models constructed from the data and introduce errors inte predictions made by air quality or climate models.
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Affiliation(s)
- Jenny Rissler
- Ergonomics
and Aerosol Technology, Lund University, Box 118, 221 00 Lund, Sweden
- Bioeconomy
and Health, Research Institutes of Sweden
(RISE), Scheelevägen
17, 223 70 Lund, Sweden
| | - Calle Preger
- Ergonomics
and Aerosol Technology, Lund University, Box 118, 221 00 Lund, Sweden
- MAX
IV Laboratory, Lund University, Box 118, 221 00 Lund, Sweden
| | - Axel C. Eriksson
- Ergonomics
and Aerosol Technology, Lund University, Box 118, 221 00 Lund, Sweden
| | - Jack J. Lin
- Center
for Atmospheric Research, University of
Oulu, P.O. Box 4500, 90014 Oulu, Finland
| | - Nønne L. Prisle
- Center
for Atmospheric Research, University of
Oulu, P.O. Box 4500, 90014 Oulu, Finland
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21
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Goudar V, Kim JW, Liu Y, Dede AJO, Jutras MJ, Skelin I, Ruvalcaba M, Chang W, Fairhall AL, Lin JJ, Knight RT, Buffalo EA, Wang XJ. Comparing rapid rule-learning strategies in humans and monkeys. bioRxiv 2023:2023.01.10.523416. [PMID: 36711889 PMCID: PMC9882042 DOI: 10.1101/2023.01.10.523416] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
Inter-species comparisons are key to deriving an understanding of the behavioral and neural correlates of human cognition from animal models. We perform a detailed comparison of macaque monkey and human strategies on an analogue of the Wisconsin Card Sort Test, a widely studied and applied multi-attribute measure of cognitive function, wherein performance requires the inference of a changing rule given ambiguous feedback. We found that well-trained monkeys rapidly infer rules but are three times slower than humans. Model fits to their choices revealed hidden states akin to feature-based attention in both species, and decision processes that resembled a Win-stay lose-shift strategy with key differences. Monkeys and humans test multiple rule hypotheses over a series of rule-search trials and perform inference-like computations to exclude candidates. An attention-set based learning stage categorization revealed that perseveration, random exploration and poor sensitivity to negative feedback explain the under-performance in monkeys.
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Affiliation(s)
- Vishwa Goudar
- Center for Neural Science, New York University, NY, USA
| | - Jeong-Woo Kim
- Center for Neural Science, New York University, NY, USA
| | - Yue Liu
- Center for Neural Science, New York University, NY, USA
| | - Adam J. O. Dede
- Department of Physiology and Biophysics, University of Washington, Seattle, WA, USA
| | - Michael J. Jutras
- Department of Physiology and Biophysics, University of Washington, Seattle, WA, USA
| | - Ivan Skelin
- Department of Neurology, University of California, Davis, Davis, CA, USA
- The Center for Mind and Brain, University of California, Davis, Davis, CA, USA
| | - Michael Ruvalcaba
- Helen Wills Neuroscience Institute, University of California Berkeley, Berkeley, CA, USA
| | - William Chang
- Helen Wills Neuroscience Institute, University of California Berkeley, Berkeley, CA, USA
| | - Adrienne L. Fairhall
- Department of Physiology and Biophysics, University of Washington, Seattle, WA, USA
| | - Jack J. Lin
- Department of Neurology, University of California, Davis, Davis, CA, USA
- The Center for Mind and Brain, University of California, Davis, Davis, CA, USA
| | - Robert T. Knight
- Department of Psychology, University of California Berkeley, Berkeley, CA, USA
- Helen Wills Neuroscience Institute, University of California Berkeley, Berkeley, CA, USA
| | - Elizabeth A. Buffalo
- Department of Physiology and Biophysics, University of Washington, Seattle, WA, USA
- Washington Primate Research Center, University of Washington, Seattle, WA, USA
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22
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Lin JJ, Jiang F, Xiang Y, Wan XR, Feng FZ, Ren T, Yang JJ, Zhao J. [The influence of lung metastasis on prognosis of previously untreated gestational trophoblastic neoplasia patients]. Zhonghua Zhong Liu Za Zhi 2022; 44:1139-1145. [PMID: 36319461 DOI: 10.3760/cma.j.cn112152-20211217-00943] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Objective: To investigate the impact of lung metastases on the prognosis of patients with gestational trophoblastic neoplasia (GTN). Methods: Patients with International Federation of Gynaecology and Obstetrics (FIGO) stage Ⅰ-Ⅲ GTN receiving primary chemotherapy in Peking Union Medical College Hospital between July 2014 and December 2018 were retrospectively analyzed and divided into group 1 with lung metastasis and group 2 without lung metastasis. The baseline characteristics and treatment outcomes of the two groups were compared. The optimal cut-off values of the diameter of largest lung nodule associated with recurrence were identified by receiver operating characteristic (ROC) curves. Logistic regression analyses were performed to identify risk factors for prognosis. Survival analysis was performed by Kaplan-Meier method and Log rank test. Results: Of the 381 GTN patients enrolled (216 with lung metastases and 165 without lung metastases), the pretreatment β human chorionic gonadotrophin [median: 12 572 IU/L (1 832-51 594 IU/L) vs. 5 614 IU/L (559-26 140 IU/L), P=0.001] and FIGO score [median: 3 (1-6) vs. 2 (1-4), P=0.038] were significantly higher in patients with lung metastases than those without lung metastases. In patients with FIGO score≥5, the emergence of resistance (26.76% vs. 10.26%, P=0.036) and median number of chemotherapy courses to achieve complete remission [6 (6-8) vs. 5 (4-6), P<0.001] were significantly higher than patients with lung metastases. In patients with FIGO score 0-4, no significant difference was found in the treatment outcomes between the two groups(P=0.833). Among all patients with lung metastases, the ROC curve showed a sensitivity and specificity of 62.5% and 78.8%, respectively, for predicting recurrence when the length of the largest lung nodule was 1.6 cm, with an area under the curve (AUC) of 0.711 (95% CI: 0.550, 0.871, P=0.044). Multivariate logistic regression analysis suggested a significantly higher recurrence rate when the largest lung nodule was ≥1.6 cm (OR=7.394, 95% CI: 1.003, 54.520, P=0.049). The 1-year disease-free survival rate was significantly lower in patients with the largest lung nodule ≥1.6 cm than in patients with the nodule <1.6 cm (98.2% vs. 82.4%, P=0.001). Conclusions: Lung metastasis is associated with increased first-line chemotherapy resistance in patients with FIGO scores≥5. The diameter of the largest lung metastatic nodule ≥1.6 cm is an effective factor for predicting recurrence.
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Affiliation(s)
- J J Lin
- Department of Obstetrics and Gynecology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences & Peking Union Medical College, National Clinical Research Center for Obstetric & Gynecologic Diseases, Beijing 100073, China
| | - F Jiang
- Department of Obstetrics and Gynecology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences & Peking Union Medical College, National Clinical Research Center for Obstetric & Gynecologic Diseases, Beijing 100073, China
| | - Y Xiang
- Department of Obstetrics and Gynecology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences & Peking Union Medical College, National Clinical Research Center for Obstetric & Gynecologic Diseases, Beijing 100073, China
| | - X R Wan
- Department of Obstetrics and Gynecology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences & Peking Union Medical College, National Clinical Research Center for Obstetric & Gynecologic Diseases, Beijing 100073, China
| | - F Z Feng
- Department of Obstetrics and Gynecology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences & Peking Union Medical College, National Clinical Research Center for Obstetric & Gynecologic Diseases, Beijing 100073, China
| | - T Ren
- Department of Obstetrics and Gynecology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences & Peking Union Medical College, National Clinical Research Center for Obstetric & Gynecologic Diseases, Beijing 100073, China
| | - J J Yang
- Department of Obstetrics and Gynecology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences & Peking Union Medical College, National Clinical Research Center for Obstetric & Gynecologic Diseases, Beijing 100073, China
| | - J Zhao
- Department of Obstetrics and Gynecology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences & Peking Union Medical College, National Clinical Research Center for Obstetric & Gynecologic Diseases, Beijing 100073, China
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23
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Liu AA, Henin S, Abbaspoor S, Bragin A, Buffalo EA, Farrell JS, Foster DJ, Frank LM, Gedankien T, Gotman J, Guidera JA, Hoffman KL, Jacobs J, Kahana MJ, Li L, Liao Z, Lin JJ, Losonczy A, Malach R, van der Meer MA, McClain K, McNaughton BL, Norman Y, Navas-Olive A, de la Prida LM, Rueckemann JW, Sakon JJ, Skelin I, Soltesz I, Staresina BP, Weiss SA, Wilson MA, Zaghloul KA, Zugaro M, Buzsáki G. A consensus statement on detection of hippocampal sharp wave ripples and differentiation from other fast oscillations. Nat Commun 2022; 13:6000. [PMID: 36224194 PMCID: PMC9556539 DOI: 10.1038/s41467-022-33536-x] [Citation(s) in RCA: 24] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2022] [Accepted: 09/21/2022] [Indexed: 02/05/2023] Open
Abstract
Decades of rodent research have established the role of hippocampal sharp wave ripples (SPW-Rs) in consolidating and guiding experience. More recently, intracranial recordings in humans have suggested their role in episodic and semantic memory. Yet, common standards for recording, detection, and reporting do not exist. Here, we outline the methodological challenges involved in detecting ripple events and offer practical recommendations to improve separation from other high-frequency oscillations. We argue that shared experimental, detection, and reporting standards will provide a solid foundation for future translational discovery.
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Affiliation(s)
- Anli A Liu
- Department of Neurology, NYU Grossman School of Medicine, New York, NY, USA
- Neuroscience Institute, NYU Langone Medical Center, New York, NY, USA
| | - Simon Henin
- Department of Neurology, NYU Grossman School of Medicine, New York, NY, USA
| | - Saman Abbaspoor
- Department of Psychology, Vanderbilt University, Nashville, TN, USA
| | - Anatol Bragin
- Department of Neurology, David Geffen School of Medicine at UCLA, Los Angeles, CA, USA
| | - Elizabeth A Buffalo
- Department of Physiology and Biophysics, Washington National Primate Center, University of Washington, Seattle, WA, USA
| | - Jordan S Farrell
- Department of Neurosurgery, Stanford University, Stanford, CA, USA
| | - David J Foster
- Department of Psychology and Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA
| | - Loren M Frank
- Kavli Institute for Fundamental Neuroscience, Center for Integrative Neuroscience and Department of Physiology, University of California San Francisco, San Francisco, CA, USA
- Howard Hughes Medical Institute, Chevy Chase, MD, USA
| | - Tamara Gedankien
- Department of Biomedical Engineering, Department of Neurological Surgery, Columbia University, New York, NY, USA
| | - Jean Gotman
- Montreal Neurological Institute, McGill University, Montreal, QC, Canada
| | - Jennifer A Guidera
- Kavli Institute for Fundamental Neuroscience, Center for Integrative Neuroscience and Department of Physiology, University of California San Francisco, San Francisco, CA, USA
- Medical Scientist Training Program, Department of Bioengineering, University of California, San Francisco, San Francisco, CA, USA
| | - Kari L Hoffman
- Vanderbilt Brain Institute, Vanderbilt University, Nashville, TN, USA
| | - Joshua Jacobs
- Department of Biomedical Engineering, Department of Neurological Surgery, Columbia University, New York, NY, USA
| | - Michael J Kahana
- Department of Psychology, University of Pennsylvania, Philadelphia, PA, USA
| | - Lin Li
- Department of Biomedical Engineering, University of North Texas, Denton, TX, USA
| | - Zhenrui Liao
- Department of Neuroscience, Columbia University, New York, NY, USA
| | - Jack J Lin
- Department of Neurology, Center for Mind and Brain, University of California Davis, Oakland, CA, USA
| | - Attila Losonczy
- Department of Neuroscience, Columbia University, New York, NY, USA
| | - Rafael Malach
- Department of Brain Sciences, Weizmann Institute of Science, Rehovot, Israel
| | | | - Kathryn McClain
- Neuroscience Institute, NYU Langone Medical Center, New York, NY, USA
| | - Bruce L McNaughton
- The Canadian Centre for Behavioural Neuroscience, University of Lethbridge, Lethbridge, AB, Canada
| | - Yitzhak Norman
- Department of Brain Sciences, Weizmann Institute of Science, Rehovot, Israel
- Department of Neurological Surgery, University of California, San Francisco, CA, USA
| | | | | | - Jon W Rueckemann
- Department of Physiology and Biophysics, Washington National Primate Center, University of Washington, Seattle, WA, USA
| | - John J Sakon
- Department of Psychology, University of Pennsylvania, Philadelphia, PA, USA
| | - Ivan Skelin
- Department of Neurology, Center for Mind and Brain, University of California Davis, Oakland, CA, USA
| | - Ivan Soltesz
- Department of Neurosurgery, Stanford University, Stanford, CA, USA
| | - Bernhard P Staresina
- Department of Experimental Psychology, Oxford Centre for Human Brain Activity, Wellcome Centre for Integrative Neuroimaging, Department of Psychiatry, University of Oxford, Oxford, UK
| | - Shennan A Weiss
- Brookdale Hospital Medical Center, SUNY Downstate Medical Center, Brooklyn, NY, USA
| | - Matthew A Wilson
- Department of Brain and Cognitive Sciences and Picower Institute for Learning and Memory, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Kareem A Zaghloul
- Surgical Neurology Branch, National Institute of Neurological Disorders and Stroke (NINDS), National Institutes of Health, Bethesda, MD, USA
| | - Michaël Zugaro
- Center for Interdisciplinary Research in Biology (CIRB), Collège de France, CNRS, INSERM, Université PSL, Paris, France
| | - György Buzsáki
- Department of Neurology, NYU Grossman School of Medicine, New York, NY, USA.
- Neuroscience Institute, NYU Langone Medical Center, New York, NY, USA.
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24
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Zheng J, Skelin I, Lin JJ. Neural computations underlying contextual processing in humans. Cell Rep 2022; 40:111395. [PMID: 36130515 PMCID: PMC9552771 DOI: 10.1016/j.celrep.2022.111395] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2021] [Revised: 03/28/2022] [Accepted: 08/29/2022] [Indexed: 12/01/2022] Open
Abstract
Context shapes our perception of facial expressions during everyday social interactions. We interpret a person’s face in a hostile situation negatively and judge the same face under pleasant circumstances positively. Critical to our adaptive fitness, context provides situation-specific framing to resolve ambiguity and guide our interpersonal behavior. This context-specific modulation of facial expression is thought to engage the amygdala, hippocampus, and orbitofrontal cortex; however, the underlying neural computations remain unknown. Here we use human intracranial electroencephalograms (EEGs) directly recorded from these regions and report bidirectional theta-gamma interactions within the amygdala-hippocampal network, facilitating contextual processing. Contextual information is subsequently represented in the orbitofrontal cortex, where a theta phase shift binds context and face associations within theta cycles, endowing faces with contextual meanings at behavioral timescales. Our results identify theta phase shifts as mediating associations between context and face processing, supporting flexible social behavior. Context influences our perception of facial expressions. Zheng et al. show that contextual modulation of faces relies on medial temporal lobe-orbitofrontal cortex communications in humans. High gamma bursts occur in rhythm with theta oscillations, with cross-regional theta-gamma phase shifts binding context-face associations.
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Affiliation(s)
- Jie Zheng
- Department of Biomedical Engineering, University of California, Irvine, Irvine, CA 92697, USA.
| | - Ivan Skelin
- Department of Neurology, University of California, Davis, Davis, CA 95817, USA; The Center for Mind and Brain, University of California, Davis, Davis, CA 95618, USA
| | - Jack J Lin
- Department of Neurology, University of California, Davis, Davis, CA 95817, USA; The Center for Mind and Brain, University of California, Davis, Davis, CA 95618, USA.
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25
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Bailey S, Mhango G, Lin JJ. The impact of bone mineral density screening on incident fractures and healthcare resource utilization among postmenopausal breast cancer survivors treated with aromatase inhibitors. Osteoporos Int 2022; 33:1989-1997. [PMID: 35697870 PMCID: PMC9464684 DOI: 10.1007/s00198-022-06458-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/03/2022] [Accepted: 05/31/2022] [Indexed: 11/30/2022]
Abstract
UNLABELLED Bone mineral density screening prior to initiating aromatase inhibitor therapy was associated with lower incident bone fractures and healthcare resource utilization among postmenopausal breast cancer survivors. INTRODUCTION Postmenopausal women with hormone receptor-positive breast cancer (BC) often receive aromatase inhibitor (AI) therapy. However, AIs induce bone loss and BC survivors are at an increased risk of bone fractures. This study determined whether receipt of baseline dual-energy x-ray absorptiometry (DXA) screening is associated with decreased incident fractures and lower healthcare resource utilization. METHODS We retrospectively analyzed 22,713 stage 0-III primary BC survivors who received AI therapy ≤ 1 year prior to BC diagnosis from the Medicare-Linked Surveillance, Epidemiology, and End-Results database. We categorized DXA screening for those who had a procedural claim within 12 months prior through 6 months after first AI claim. We used propensity score methods to assess the association of DXA screening with bone fractures and health resource utilization. RESULTS Of the study cohort, 62% received a DXA screening. Women with comorbid dementia, renal disease, and congestive heart failure were less likely to receive a DXA. After adjusting for confounders, BC survivors who received a DXA had a 32% decreased risk of any bone fracture compared to those who did not (hazard ratio (HR): 0.68, 95% confidence interval (CI): 0.60-0.76, p < 0.001). Similarly, those who received a DXA were less likely to be hospitalized (HR 0.73 (0.62-0.86)) or use outpatient services (HR 0.85 (0.74-0.97)). CONCLUSIONS Bone density screening is associated with decreased incident bone fractures and a lower likelihood of utilizing healthcare resource for fracture-related events. Postmenopausal BC survivors treated with AIs should undergo appropriate bone density screening to reduce morbidity, mortality, and health care expenses.
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Affiliation(s)
- S Bailey
- Department of Biomedical Engineering, Institute for Applied Life Sciences, University of Massachusetts Amherst, 240 Thatcher Road, Amherst, MA, 01003, USA.
| | - G Mhango
- Division of General Internal Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA
| | - J J Lin
- Division of General Internal Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA
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26
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Johnson EL, Chang WK, Dewar CD, Sorensen D, Lin JJ, Solbakk AK, Endestad T, Larsson PG, Ivanovic J, Meling TR, Scabini D, Knight RT. Orbitofrontal cortex governs working memory for temporal order. Curr Biol 2022; 32:R410-R411. [PMID: 35537388 PMCID: PMC9169582 DOI: 10.1016/j.cub.2022.03.074] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
How do we think about time? Converging lesion and neuroimaging evidence indicates that orbitofrontal cortex (OFC) supports the encoding and retrieval of temporal context in long-term memory1, which may contribute to confabulation in individuals with OFC damage2. Here, we reveal that OFC damage diminishes working memory for temporal order, that is, the ability to disentangle the relative recency of events as they unfold. OFC lesions reduced working memory for temporal order but not spatial position, and individual deficits were commensurate with lesion size. Comparable effects were absent in patients with lesions restricted to lateral prefrontal cortex (PFC). Based on these findings, we propose that OFC supports understanding of the order of events. Well-documented behavioral changes in individuals with OFC damage2 may relate to impaired temporal-order understanding.
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Affiliation(s)
- Elizabeth L Johnson
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA 94720, USA; Departments of Medical Social Sciences and Pediatrics, Northwestern University, Chicago, IL 60611, USA.
| | - William K Chang
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA 94720, USA
| | - Callum D Dewar
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA 94720, USA; Division of Neurosurgery, Walter Reed National Military Medical Center, Bethesda, MD 20814, USA
| | | | - Jack J Lin
- Department of Neurology and Center for Mind and Brain, University of California, Davis, Davis, CA 95616, USA
| | - Anne-Kristin Solbakk
- Department of Neurosurgery, Division of Stereotactic and Functional Neurosurgery, Oslo University Hospital, Rikshospitalet, Oslo 0372, Norway; Department of Psychology, Faculty of Social Sciences, University of Oslo, Oslo 0373, Norway; RITMO Centre for Interdisciplinary Studies in Rhythm, Time and Motion, University of Oslo, Oslo 0373, Norway; Department of Neuropsychology, Helgeland Hospital, Mosjøen 8657, Norway
| | - Tor Endestad
- Department of Psychology, Faculty of Social Sciences, University of Oslo, Oslo 0373, Norway; RITMO Centre for Interdisciplinary Studies in Rhythm, Time and Motion, University of Oslo, Oslo 0373, Norway; Department of Neuropsychology, Helgeland Hospital, Mosjøen 8657, Norway
| | - Pal G Larsson
- Department of Neurosurgery, Division of Stereotactic and Functional Neurosurgery, Oslo University Hospital, Rikshospitalet, Oslo 0372, Norway; Department of Psychology, Faculty of Social Sciences, University of Oslo, Oslo 0373, Norway
| | - Jugoslav Ivanovic
- Department of Neurosurgery, Division of Stereotactic and Functional Neurosurgery, Oslo University Hospital, Rikshospitalet, Oslo 0372, Norway
| | - Torstein R Meling
- Department of Neurosurgery, Division of Stereotactic and Functional Neurosurgery, Oslo University Hospital, Rikshospitalet, Oslo 0372, Norway; Department of Psychology, Faculty of Social Sciences, University of Oslo, Oslo 0373, Norway; Institute of Clinical Medicine, Faculty of Medicine, University of Oslo, Oslo 0373, Norway
| | - Donatella Scabini
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA 94720, USA
| | - Robert T Knight
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA 94720, USA; Department of Psychology, University of California, Berkeley, Berkeley, CA 94720, USA
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27
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Nunez MD, Charupanit K, Sen-Gupta I, Lopour BA, Lin JJ. Beyond rates: time-varying dynamics of high frequency oscillations as a biomarker of the seizure onset zone. J Neural Eng 2022; 19:10.1088/1741-2552/ac520f. [PMID: 35120337 PMCID: PMC9258635 DOI: 10.1088/1741-2552/ac520f] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2021] [Accepted: 02/04/2022] [Indexed: 11/11/2022]
Abstract
Objective. High frequency oscillations (HFOs) recorded by intracranial electrodes have generated excitement for their potential to help localize epileptic tissue for surgical resection. However, the number of HFOs per minute (i.e. the HFO 'rate') is not stable over the duration of intracranial recordings; for example, the rate of HFOs increases during periods of slow-wave sleep. Moreover, HFOs that are predictive of epileptic tissue may occur in oscillatory patterns due to phase coupling with lower frequencies. Therefore, we sought to further characterize between-seizure (i.e. 'interictal') HFO dynamics both within and outside the seizure onset zone (SOZ).Approach. Using long-term intracranial EEG (mean duration 10.3 h) from 16 patients, we automatically detected HFOs using a new algorithm. We then fit a hierarchical negative binomial model to the HFO counts. To account for differences in HFO dynamics and rates between sleep and wakefulness, we also fit a mixture model to the same data that included the ability to switch between two discrete brain states that were automatically determined during the fitting process. The ability to predict the SOZ by model parameters describing HFO dynamics (i.e. clumping coefficients and coefficients of variation) was assessed using receiver operating characteristic curves.Main results. Parameters that described HFO dynamics were predictive of SOZ. In fact, these parameters were found to be more consistently predictive than HFO rate. Using concurrent scalp EEG in two patients, we show that the model-found brain states corresponded to (1) non-REM sleep and (2) awake and rapid eye movement sleep. However the brain state most likely corresponding to slow-wave sleep in the second model improved SOZ prediction compared to the first model for only some patients.Significance. This work suggests that delineation of SOZ with interictal data can be improved by the inclusion of time-varying HFO dynamics.
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Affiliation(s)
- Michael D. Nunez
- Department of Psychology, University of Amsterdam, Amsterdam, The Netherlands,Department of Biomedical Engineering, University of California, Irvine CA, USA,Corresponding author (Michael D. Nunez), (Beth A. Lopour)
| | - Krit Charupanit
- Department of Biomedical Engineering, University of California, Irvine CA, USA,Department of Biomedical Sciences and Biomedical Engineering, Faculty of Medicine, Prince of Songkla University, Songkhla 90110, Thailand
| | - Indranil Sen-Gupta
- Neurology, University of California Irvine Medical Center, Orange CA, USA
| | - Beth A. Lopour
- Department of Biomedical Engineering, University of California, Irvine CA, USA,Corresponding author (Michael D. Nunez), (Beth A. Lopour)
| | - Jack J. Lin
- Department of Neurology, University of California, Irvine CA, USA
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Lin JJ, Muzikansky A, Kennedy E, Kuberski H, Stober LL, Wanat AC, Azzoli CG, Lennes I, Sequist LV, Dagogo-Jack I, Shaw AT, Gainor JF. Safety and activity of alectinib plus bevacizumab in patients with advanced ALK-rearranged non-small-cell lung cancer: a phase I/II study. ESMO Open 2021; 7:100342. [PMID: 34896762 PMCID: PMC8666648 DOI: 10.1016/j.esmoop.2021.100342] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2021] [Revised: 11/10/2021] [Accepted: 11/17/2021] [Indexed: 12/20/2022] Open
Abstract
Background Alectinib, a second-generation anaplastic lymphoma kinase (ALK) tyrosine kinase inhibitor (TKI), is highly effective in advanced ALK-rearranged non-small-cell lung cancer and represents a standard first-line therapy. New strategies are needed, however, to delay resistance. We conducted a phase I/II study to assess the safety and efficacy of combining alectinib with bevacizumab, a monoclonal antibody against vascular endothelial growth factor. Patients and methods Patients with advanced ALK-rearranged non-squamous non-small-cell lung cancer were enrolled. The phase I portion employed a dose de-escalation strategy with alectinib and bevacizumab starting at the individual standard doses. The primary objective was to determine the recommended phase II dose (RP2D). In phase II, the primary objective was to evaluate the safety of the combination at the RP2D; the secondary objective was to determine extracranial and intracranial efficacy. Results Eleven patients were enrolled between September 2015 and February 2020. Most patients (82%) had baseline brain metastases. Six patients (55%) were treatment-naive; five (46%) had received prior ALK TKIs (crizotinib, n = 3; ceritinib, n = 1; crizotinib then brigatinib, n = 1). No dose-limiting toxicities occurred. RP2D was determined as alectinib 600 mg orally twice daily plus bevacizumab 15 mg/kg intravenously every 3 weeks. Three patients experienced grade 3 treatment-related adverse events: pneumonitis related to alectinib, proteinuria related to bevacizumab, and hypertension related to bevacizumab. Treatment-related intracranial hemorrhage was not observed. Six (100%) of six treatment-naive patients and three (60%) of five ALK TKI-pretreated patients had objective responses; median progression-free survival was not reached (95% confidence interval, 9.0 months-not reached) and 9.5 months (95% confidence interval, 4.3 months-not reached), respectively. Intracranial responses occurred in four (100%) of four treatment-naive and three (60%) of five TKI-pretreated patients with baseline brain metastases. The study was stopped prematurely because of slow accrual. Conclusions Alectinib plus bevacizumab was well tolerated without unanticipated toxicities or dose-limiting toxicities. Alectinib plus bevacizumab is safe in patients with advanced ALK-rearranged non-small-cell lung cancer. Bevacizumab combined with alectinib does not increase risk of intracranial hemorrhage in patients with brain metastases. Enrollment challenges with this trial highlight important considerations for future studies of ALK inhibitor combinations.
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Affiliation(s)
- J J Lin
- Department of Medicine, Massachusetts General Hospital, Boston, USA
| | - A Muzikansky
- Department of Medicine, Massachusetts General Hospital, Boston, USA
| | - E Kennedy
- Department of Medicine, Massachusetts General Hospital, Boston, USA
| | - H Kuberski
- Department of Medicine, Massachusetts General Hospital, Boston, USA
| | - L L Stober
- Department of Medicine, Massachusetts General Hospital, Boston, USA
| | - A C Wanat
- Department of Medicine, Massachusetts General Hospital, Boston, USA
| | - C G Azzoli
- Department of Medicine, Massachusetts General Hospital, Boston, USA
| | - I Lennes
- Department of Medicine, Massachusetts General Hospital, Boston, USA
| | - L V Sequist
- Department of Medicine, Massachusetts General Hospital, Boston, USA
| | - I Dagogo-Jack
- Department of Medicine, Massachusetts General Hospital, Boston, USA
| | - A T Shaw
- Department of Medicine, Massachusetts General Hospital, Boston, USA.
| | - J F Gainor
- Department of Medicine, Massachusetts General Hospital, Boston, USA.
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29
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Demirel BU, Skelin I, Zhang H, Lin JJ, Abdullah Al Faruque M. Single-Channel EEG Based Arousal Level Estimation Using Multitaper Spectrum Estimation at Low-Power Wearable Devices. Annu Int Conf IEEE Eng Med Biol Soc 2021; 2021:542-545. [PMID: 34891351 DOI: 10.1109/embc46164.2021.9629733] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
This paper proposes a novel lightweight method using the multitaper power spectrum to estimate arousal levels at wearable devices. We show that the spectral slope (1/f) of the electrophysiological power spectrum reflects the scale-free neural activity. To evaluate the proposed feature's performance, we used scalp EEG recorded during anesthesia and sleep with technician-scored Hypnogram annotations. It is shown that the proposed methodology discriminates wakefulness from reduced arousal solely based on the neurophysiological brain state with more than 80% accuracy. Therefore, our findings describe a common electrophysiological marker that tracks reduced arousal states, which can be applied to different applications (e.g., emotion detection, driver drowsiness). Evaluation on hardware shows that the proposed methodology can be implemented for devices with a minimum RAM of 512 KB with 55 mJ average energy consumption.
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30
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Llorens A, Tzovara A, Bellier L, Bhaya-Grossman I, Bidet-Caulet A, Chang WK, Cross ZR, Dominguez-Faus R, Flinker A, Fonken Y, Gorenstein MA, Holdgraf C, Hoy CW, Ivanova MV, Jimenez RT, Jun S, Kam JWY, Kidd C, Marcelle E, Marciano D, Martin S, Myers NE, Ojala K, Perry A, Pinheiro-Chagas P, Riès SK, Saez I, Skelin I, Slama K, Staveland B, Bassett DS, Buffalo EA, Fairhall AL, Kopell NJ, Kray LJ, Lin JJ, Nobre AC, Riley D, Solbakk AK, Wallis JD, Wang XJ, Yuval-Greenberg S, Kastner S, Knight RT, Dronkers NF. Gender bias in academia: A lifetime problem that needs solutions. Neuron 2021; 109:2047-2074. [PMID: 34237278 PMCID: PMC8553227 DOI: 10.1016/j.neuron.2021.06.002] [Citation(s) in RCA: 54] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2020] [Revised: 11/19/2020] [Accepted: 06/01/2021] [Indexed: 11/18/2022]
Abstract
Despite increased awareness of the lack of gender equity in academia and a growing number of initiatives to address issues of diversity, change is slow, and inequalities remain. A major source of inequity is gender bias, which has a substantial negative impact on the careers, work-life balance, and mental health of underrepresented groups in science. Here, we argue that gender bias is not a single problem but manifests as a collection of distinct issues that impact researchers' lives. We disentangle these facets and propose concrete solutions that can be adopted by individuals, academic institutions, and society.
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Affiliation(s)
- Anaïs Llorens
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA.
| | - Athina Tzovara
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA; Institute for Computer Science, University of Bern, Bern, Switzerland; Sleep Wake Epilepsy Center | NeuroTec, Department of Neurology, Inselspital, Bern University Hospital, University Bern, Bern, Switzerland.
| | - Ludovic Bellier
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA
| | - Ilina Bhaya-Grossman
- Department of Bioengineering, University of California, Berkeley, Berkeley, CA, USA
| | - Aurélie Bidet-Caulet
- Brain Dynamics and Cognition Team, Lyon Neuroscience Research Center, CRNL, INSERM U1028, CNRS UMR 5292, University of Lyon, Lyon, France
| | - William K Chang
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA
| | - Zachariah R Cross
- Cognitive and Systems Neuroscience Research Hub, University of South Australia, Adelaide, SA, Australia
| | | | | | - Yvonne Fonken
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA; Department of Psychiatry, University of Oxford, Oxford, UK
| | - Mark A Gorenstein
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA; Department of Psychology, University of California, Berkeley, Berkeley, CA, USA
| | - Chris Holdgraf
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA; The Berkeley Institute for Data Science, Berkeley, CA, USA
| | - Colin W Hoy
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA
| | - Maria V Ivanova
- Department of Psychology, University of California, Berkeley, Berkeley, CA, USA
| | - Richard T Jimenez
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA
| | - Soyeon Jun
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA; Department of Brain and Cognitive Science College of Natural Sciences, Seoul National University, Seoul, Korea
| | - Julia W Y Kam
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA; Department of Psychology, University of Calgary, Calgary, AB, Canada
| | - Celeste Kidd
- Department of Psychology, University of California, Berkeley, Berkeley, CA, USA
| | - Enitan Marcelle
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA
| | - Deborah Marciano
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA; Haas School of Business, University of California, Berkeley, Berkeley, CA, USA
| | - Stephanie Martin
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA; Department of Cognitive Science, University of California, San Diego, San Diego, CA, USA
| | - Nicholas E Myers
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA; Department of Experimental Psychology and Oxford Centre for Human Brain Activity, Department of Psychiatry, Wellcome Centre for Integrative Neuroimaging, University of Oxford, Oxford, UK
| | - Karita Ojala
- Institute of Systems Neuroscience, Center for Experimental Medicine, University Medical Center Hamburg-Eppendorf, Hamburg, Germany
| | - Anat Perry
- Department of Psychology, the Hebrew University of Jerusalem, Jerusalem, Israel
| | - Pedro Pinheiro-Chagas
- Laboratory of Behavioral and Cognitive Neuroscience, Stanford Human, Stanford University, Stanford, CA, USA
| | - Stephanie K Riès
- School of Speech, Language, and Hearing Sciences and Center for Clinical and Cognitive Neuroscience, San Diego State University, San Diego, CA, USA
| | - Ignacio Saez
- Department of Neurosurgery, University of California Davis, Sacramento, CA, USA
| | - Ivan Skelin
- Department of Neurobiology and Behavior, University of California, Irvine, Irvine, CA, USA
| | - Katarina Slama
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA
| | - Brooke Staveland
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA; Haas School of Business, University of California, Berkeley, Berkeley, CA, USA
| | - Danielle S Bassett
- Departments of Bioengineering, Electrical & Systems Engineering, Physics & Astronomy, Psychiatry, and Neurology, University of Pennsylvania, Philadelphia, PA, USA; Santa Fe Institute, Santa Fe, NM 87501, USA
| | - Elizabeth A Buffalo
- Department of Physiology and Biophysics and School of Medicine, Washington National Primate Research Center, University of Washington, Seattle, WA, USA
| | - Adrienne L Fairhall
- Department of Physiology and Biophysics and Computational Neuroscience Center, University of Washington, Seattle, WA 98195, USA
| | - Nancy J Kopell
- Department of Mathematics & Statistics, Boston University, Boston, MA, USA
| | - Laura J Kray
- Haas School of Business, University of California, Berkeley, Berkeley, CA, USA
| | - Jack J Lin
- Comprehensive Epilepsy Program, Department of Neurology, University of California, Irvine, Irvine, CA, USA; Department of Biomedical Engineering, Henry Samueli School of Engineering, Irvine, CA, USA
| | - Anna C Nobre
- Department of Experimental Psychology and Oxford Centre for Human Brain Activity, Department of Psychiatry, Wellcome Centre for Integrative Neuroimaging, University of Oxford, Oxford, UK
| | - Dylan Riley
- Department of Sociology, University of California, Berkeley, Berkeley, CA 94720-1980, USA
| | - Anne-Kristin Solbakk
- Department of Psychology, Oslo University Hospital-Rikshospitalet, Oslo, Norway; Department of Neurosurgery, Oslo University Hospital-Rikshospitalet, Oslo, Norway; RITMO Centre for Interdisciplinary Studies in Rhythm, Time and Motion, University of Oslo, Oslo, Norway; Department of Neuropsychology, Helgeland Hospital, Mosjøen, Norway
| | - Joni D Wallis
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA; Department of Psychology, University of California, Berkeley, Berkeley, CA, USA
| | - Xiao-Jing Wang
- Center for Neural Science, New York University, 4 Washington Place, New York, NY 10003, USA
| | - Shlomit Yuval-Greenberg
- School of Psychological Sciences and Sagol School of Neuroscience, Tel Aviv University, Ramat Aviv, 6997801 Tel Aviv-Yafo, Israel
| | - Sabine Kastner
- Princeton Neuroscience Institute and Department of Psychology, Princeton University, Princeton, NJ 08544, USA
| | - Robert T Knight
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA; Department of Psychology, University of California, Berkeley, Berkeley, CA, USA
| | - Nina F Dronkers
- Department of Psychology, University of California, Berkeley, Berkeley, CA, USA; Department of Neurology, University of California, Davis, Sacramento, CA, USA
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31
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Slama SJK, Jimenez R, Saha S, King-Stephens D, Laxer KD, Weber PB, Endestad T, Ivanovic J, Larsson PG, Solbakk AK, Lin JJ, Knight RT. Intracranial Recordings Demonstrate Both Cortical and Medial Temporal Lobe Engagement in Visual Search in Humans. J Cogn Neurosci 2021; 33:1833-1861. [PMID: 34375422 DOI: 10.1162/jocn_a_01739] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
Visual search is a fundamental human behavior, providing a gateway to understanding other sensory domains as well as the role of search in higher-order cognition. Search has been proposed to include two component processes: inefficient search (Search) and efficient search (Pop-out). According to extant research, these two processes map onto two separable neural systems located in the frontal and parietal association cortices. In this study, we use intracranial recordings from 23 participants to delineate the neural correlates of Search and Pop-out with an unprecedented combination of spatiotemporal resolution and coverage across cortical and subcortical structures. First, we demonstrate a role for the medial temporal lobe in visual search, on par with engagement in frontal and parietal association cortex. Second, we show a gradient of increasing engagement over anatomical space from dorsal to ventral lateral frontal cortex. Third, we confirm previous intracranial work demonstrating nearly complete overlap in neural engagement across cortical regions in Search and Pop-out. We further demonstrate Pop-out selectivity, manifesting as activity increase in Pop-out as compared to Search, in a distributed set of sites including frontal cortex. This result is at odds with the view that Pop-out is implemented in low-level visual cortex or parietal cortex alone. Finally, we affirm a central role for the right lateral frontal cortex in Search.
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Affiliation(s)
| | | | | | | | | | | | - Tor Endestad
- University of Oslo, Norway.,Helgeland Hospital, Mosjøen, Norway
| | | | | | - Anne-Kristin Solbakk
- Helgeland Hospital, Mosjøen, Norway.,Oslo University Hospital - Rikshospitalet, Norway.,University of Oslo
| | - Jack J Lin
- University of California, Irvine Medical Center, Orange
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32
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Zhang H, Pan JJ, Jiang XF, Lin JJ, Lu LJ, Chu JG. [Study of portal venous pressure gradient to predict high-hepatic encephalopathy-risk population post TIPS]. Zhonghua Gan Zang Bing Za Zhi 2021; 29:72-74. [PMID: 33548970 DOI: 10.3760/cma.j.cn501113-20190716-00248] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
Transjugular intrahepatic portosystemic shunt (TIPS) can effectively reduce the portal venous pressure and relieve the clinical complications related to portal hypertension. However, hepatic encephalopathy (HE) is still the main complication post TIPS. Studies have shown that patients over 65 years old with liver function reserve in Child-Pugh grade C are the high-HE-risk group post TIPS, and early TIPS treatment can benefit the survival of these high-risk patients. In this study, TIPS was used to treat 60 cases aged > 65 years old and liver function reserve in Child-Pugh grade C (decompensated liver cirrhosis) with esophagogastric variceal bleeding. The clinical results of 1-year was observed and the porto systemic gradient (PSG) was evaluated. The relationship between the incidence of HE and the PSG of patients with and without HE were compared to evaluate the effect of PSG on the incidence of HE.
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Affiliation(s)
- H Zhang
- Department of Gastroenterology, Wenzhou Central Hospital, Wenzhou 325000, China
| | - J J Pan
- Department of Radiology, Wenzhou People's Hospital, Wenzhou 325000, China
| | - X F Jiang
- Department of Gastroenterology, Wenzhou Central Hospital, Wenzhou 325000, China
| | - J J Lin
- Department of Gastroenterology, Wenzhou Central Hospital, Wenzhou 325000, China
| | - L J Lu
- Department of Gastroenterology, Wenzhou Central Hospital, Wenzhou 325000, China
| | - J G Chu
- Department of Radiology, Air Force General Hospital, Beijing 100142, China
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33
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Lin JJ, Zhang T, Peng M, Shi JH. [Clinical features of pulmonary artery involvement in Takayasu's arteritis and recent advances]. Zhonghua Jie He He Hu Xi Za Zhi 2021; 44:54-59. [PMID: 33412625 DOI: 10.3760/cma.j.cn112147-20200316-00349] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
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34
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Kam JWY, Helfrich RF, Solbakk AK, Endestad T, Larsson PG, Lin JJ, Knight RT. Top-Down Attentional Modulation in Human Frontal Cortex: Differential Engagement during External and Internal Attention. Cereb Cortex 2021; 31:873-883. [PMID: 33063100 DOI: 10.1093/cercor/bhaa262] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2020] [Revised: 08/18/2020] [Accepted: 08/18/2020] [Indexed: 12/19/2022] Open
Abstract
Decades of electrophysiological research on top-down control converge on the role of the lateral frontal cortex in facilitating attention to behaviorally relevant external inputs. However, the involvement of frontal cortex in the top-down control of attention directed to the external versus internal environment remains poorly understood. To address this, we recorded intracranial electrocorticography while subjects directed their attention externally to tones and responded to infrequent target tones, or internally to their own thoughts while ignoring the tones. Our analyses focused on frontal and temporal cortices. We first computed the target effect, as indexed by the difference in high frequency activity (70-150 Hz) between target and standard tones. Importantly, we then compared the target effect between external and internal attention, reflecting a top-down attentional effect elicited by task demands, in each region of interest. Both frontal and temporal cortices showed target effects during external and internal attention, suggesting this effect is present irrespective of attention states. However, only the frontal cortex showed an enhanced target effect during external relative to internal attention. These findings provide electrophysiological evidence for top-down attentional modulation in the lateral frontal cortex, revealing preferential engagement with external attention.
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Affiliation(s)
- Julia W Y Kam
- Department of Psychology, University of Calgary, Calgary AB T2N 1N4, Canada.,Hotchkiss Brain Institute, University of Calgary, Calgary AB T2N 4N1, Canada.,Helen Wills Neuroscience Institute, University of California - Berkeley, Berkeley, CA 94720, USA
| | - Randolph F Helfrich
- Center for Neurology, University Medical Center Tübingen, Tübingen 2669-72016, Germany.,Hertie-Institute for Clinical Brain Research, University of Tübingen, Tübingen 72076, Germany
| | - Anne-Kristin Solbakk
- Department of Psychology, Faculty of Social Sciences, University of Oslo, 0317 Oslo, Norway.,Department of Neuropsychology, Helgeland Hospital, Oslo, 0317, Norway.,Department of Neurosurgery, Division of Clinical Neuroscience, Oslo University Hospital - Rikshospitalet, Oslo, 0450, Norway
| | - Tor Endestad
- Department of Psychology, Faculty of Social Sciences, University of Oslo, 0317 Oslo, Norway
| | - Pål G Larsson
- Department of Neurosurgery, Division of Clinical Neuroscience, Oslo University Hospital - Rikshospitalet, Oslo, 0450, Norway.,Department of Neurosurgery, Division of Surgery, Oslo University Hospital - Rikshospitalet, Oslo, 0450, Norway
| | - Jack J Lin
- Comprehensive Epilepsy Program, Department of Neurology, University of California - Irvine, Irvine, CA 92868, USA
| | - Robert T Knight
- Helen Wills Neuroscience Institute, University of California - Berkeley, Berkeley, CA 94720, USA.,Department of Psychology, University of California - Berkeley, Berkeley, CA 94720, USA
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35
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Lin JJ, Yan HF, Sun PM, Zhang T, Hu G, Zhao Y, Sun HW, Zhou JL, Cui Y. [Study of thermal injury effects on human HaCaT cells under simulated microgravity environment]. Zhonghua Shao Shang Za Zhi 2020; 36:830-837. [PMID: 32972068 DOI: 10.3760/cma.j.cn501120-20190718-00301] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
Objective: To investigate the thermal injury effects on human HaCaT cells under simulated microgravity environment. Methods: The human HaCaT cells were collected and divided into simulated microgravity thermal injury (SMGTI) group, normal gravity thermal injury (NGTI) group, and normal gravity false injury (NGFI) group according to the random number table. Cells in NGTI and NGFI groups were cultured routinely in culture bottle, and cells in SMGTI group were cultured in the rotary cell culture system to simulate microgravity environment. Cells in SMGTI and NGTI groups were bathed in hot water of 45 ℃ for 10 minutes to make thermal injury model, and cells in NGFI group were bathed in warm water of 37 ℃ for 10 minutes to simulate thermal injury. At post injury hour (PIH) 12, cell morphology of 3 groups was observed under inverted phase contrast electron microscope. At PIH 2, 6, and 12, single cell suspension in the 3 groups was collected to detect the cell cycle by flow cytometer and the mRNA expressions of heat shock protein 70 (HSP70), matrix metalloproteinase 9 (MMP-9), and cysteine-aspartic protease 3 (caspase-3) by real time fluorescence quantitative reverse transcription polymerase chain reaction, and the experiments were repeated for 3 times. At PIH 2, 6, and 12, cell culture supernatant in the 3 groups was collected to detect the concentration of heparin-binding epidermal growth factor (HB-EGF) by enzyme linked immunosorbent assay method, the experiment was repeated for 3 times. The sample in each group and each time point was 3. Data were statistically analyzed with analysis of variance for factorial design, one-way analysis of variance, least significant difference test, Kruskal-Wallis H test, and Mann-Whitney U test. Results: (1) At PIH 12, cells in NGFI group showed regular shape and regular arrangement, with no cell debris. The cell shape in NGTI group was generally regular, with fewer cell debris and closer arrangement than that in NGFI group. The cells in SMGTI group showed more irregular shapes, different sizes, and dead cell debris. (2) The percentage of G1 phase cells in NGTI group was significantly higher than that in NGFI group and SMGTI group at PIH 2, respectively (P<0.05), and the percentage of G1 phase cells in NGTI group was significantly lower than that in NGFI group and SMGTI group at PIH 6 and 12, respectively (P<0.05). The percentage of G2/M phase cells in NGTI group was significantly lower than that in SMGTI group at PIH 2 (P<0.05), and the percentage of G2/M phase cells in NGTI group was significantly higher than that in NGFI group and SMGTI group at PIH 6 and 12, respectively (P<0.05). The percentage of S phase cells in NGTI group at PIH 2, 6, and 12 was significantly higher than that in SMGTI group (P<0.05), and the percentage of S phase cells in NGTI group at PIH 2 and 6 was significantly lower than that in NGFI group (P<0.05). (3) The HSP70 mRNA expressions of cells in NGTI group were 2.50±0.30 and 3.99±0.35 at PIH 2 and 6, which were significantly higher than 1.14±0.15 and 0.82±0.27 in NGFI group (P<0.05), and 1.17±0.53 and 1.65±0.59 in SMGTI group (P<0.05). The MMP-9 mRNA expression of cells in SMGTI group was significantly higher than that in NGTI group at PIH 2, 6, and 12, respectively (Z=-2.319, -2.882, -2.908, P<0.05). At each time point after injury, the mRNA expression of caspase-3 of cells in NGTI group was similar to that in NGFI group and SMGTI group, respectively (P>0.05). (4) The concentration of HB-EGF in cell culture supernatant of NGTI group was significantly lower than that in NGFI group at PIH 2, 6 and 12 (P<0.05), and the concentration of HB-EGF in cell culture supernatant of SMGTI group was significantly higher than that in NGTI group at PIH 2 and 6 (P<0.05). Conclusions: The proliferation and secretion functions and expression of wound repair related protein of human HaCaT cells inflicted with thermal injury in simulated microgravity environment showed complex and diversified changes, which provide theoretical basis for further research on damage repair under weightlessness.
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Affiliation(s)
- J J Lin
- Department of General Surgery, Chinese PLA Strategic Support Force Characteristic Medical Center, Beijing 100101, China
| | - H F Yan
- Department of General Surgery, Chinese PLA Strategic Support Force Characteristic Medical Center, Beijing 100101, China
| | - P M Sun
- Department of General Surgery, Chinese PLA Strategic Support Force Characteristic Medical Center, Beijing 100101, China
| | - T Zhang
- Department of General Surgery, Chinese PLA Strategic Support Force Characteristic Medical Center, Beijing 100101, China
| | - G Hu
- Department of General Surgery, Chinese PLA Strategic Support Force Characteristic Medical Center, Beijing 100101, China
| | - Y Zhao
- Department of General Surgery, Chinese PLA Strategic Support Force Characteristic Medical Center, Beijing 100101, China
| | - H W Sun
- Department of General Surgery, Chinese PLA Strategic Support Force Characteristic Medical Center, Beijing 100101, China
| | - J L Zhou
- Department of Pathology, Chinese PLA Strategic Support Force Characteristic Medical Center, Beijing 100101, China
| | - Y Cui
- Department of General Surgery, Chinese PLA Strategic Support Force Characteristic Medical Center, Beijing 100101, China
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Gong HJ, Lin JJ, Li H, Nan ZQ. A study on protective effect of morphine against myocardial ischemia-reperfusion injury in rats via CAMP/PKA signaling pathway. J BIOL REG HOMEOS AG 2020; 34:1669-1677. [PMID: 33111516 DOI: 10.23812/20-224-a] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
The purpose of this study was to explore the mitigating effect of morphine on the myocardial ischemia-reperfusion injury (MIRI) in rats through the cyclic adenosine monophosphate/protein kinase A (cAMP/PKA) pathway. A total of 30 male Wistar rats were assigned into sham group, MIRI group and morphine group using a random number table. The model of MIRI was routinely established. Then, the pathological changes in the morphology of myocardial tissues were observed via hematoxylin-eosin (HE) staining. The levels of the oxidative stress indicators superoxide dismutase (SOD) and malondialdehyde (MDA), the content of the inflammatory cytokine tumor necrosis factor alpha (TNF-α), interleukin-1 beta (IL-1β) and IL-6 and the quantity of glutathione peroxidase (GSH-Px), lactate dehydrogenase (LDH), creatine kinase (CK), CK-MB and cardiac troponin I (cTnI) in the myocardial enzyme spectrum were determined and analyzed through enzyme-linked immunosorbent assay (ELISA). Moreover, the messenger ribonucleic acid (mRNA) and protein expressions of cAMP, PKA, cAMP-response element binding protein (CREB) and phosphorylated CREB (p-CREB) in the cAMP/PKA signaling pathway in the myocardial tissues were measured using real-time polymerase chain reaction (PCR) and Western blotting, respectively. The results manifested that compared with those in MIRI group, the levels of myocardial infarct size, LDH, CK, CK-MB, cTnI, MDA, TNF-α, IL-1β, IL-6 and p-CREB were decreased, while the levels of GSH-Px, SOD, PKA and CREB were increased in the morphine group. In conclusion, morphine may mitigate MIRI in rats through the cAMP/PKA signaling pathway.
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Affiliation(s)
- H J Gong
- Department of Anesthesiology, Ningbo Yinzhou Second Hospital, Ningbo, China
| | - J J Lin
- Department of Anesthesiology, Ningbo Yinzhou Second Hospital, Ningbo, China
| | - H Li
- Department of Anesthesiology, Ningbo Yinzhou Second Hospital, Ningbo, China
| | - Z Q Nan
- Department of Anesthesiology, Wenzhou Central Hospital, Wenzhou, China
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Charupanit K, Sen-Gupta I, Lin JJ, Lopour BA. Amplitude of high frequency oscillations as a biomarker of the seizure onset zone. Clin Neurophysiol 2020; 131:2542-2550. [PMID: 32927209 DOI: 10.1016/j.clinph.2020.07.021] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2020] [Revised: 07/13/2020] [Accepted: 07/19/2020] [Indexed: 10/23/2022]
Abstract
OBJECTIVE Studies of high frequency oscillations (HFOs) in epilepsy have primarily tested the HFO rate as a biomarker of the seizure onset zone (SOZ), but the rate varies over time and is not robust for all individual subjects. As an alternative, we tested the performance of HFO amplitude as a potential SOZ biomarker using two automated detection algorithms. METHOD HFOs were detected in intracranial electroencephalogram (iEEG) from 11 patients using a machine learning algorithm and a standard amplitude-based algorithm. For each detector, SOZ and non-SOZ channels were classified using the rate and amplitude of high frequency events, and performance was compared using receiver operating characteristic curves. RESULTS The amplitude of detected events was significantly higher in SOZ. Across subjects, amplitude more accurately classified SOZ/non-SOZ than rate (higher values of area under the ROC curve and sensitivity, and lower false positive rates). Moreover, amplitude was more consistent across segments of data, indicated by lower coefficient of variation. CONCLUSION As an SOZ biomarker, HFO amplitude offers advantages over HFO rate: it exhibits higher classification accuracy, more consistency over time, and robustness to parameter changes. SIGNIFICANCE This biomarker has the potential to increase the generalizability of HFOs and facilitate clinical implementation as a tool for SOZ localization.
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Affiliation(s)
- Krit Charupanit
- University of California, Irvine, Biomedical Engineering, 3120 Natural Sciences II, University of California, Irvine, CA 92697, USA
| | - Indranil Sen-Gupta
- University of California Irvine Medical Center, Neurology, 101 The City Drive South, Pavilion 1, Orange, CA 92868, USA
| | - Jack J Lin
- University of California, Irvine, Neurology, 101 The City Drive South, Building 22C, 2nd Floor, RT13, Orange, CA 92602, USA
| | - Beth A Lopour
- University of California, Irvine, Biomedical Engineering, 3120 Natural Sciences II, University of California, Irvine, CA 92697, USA.
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38
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Lendner JD, Helfrich RF, Mander BA, Romundstad L, Lin JJ, Walker MP, Larsson PG, Knight RT. An electrophysiological marker of arousal level in humans. eLife 2020; 9:e55092. [PMID: 32720644 PMCID: PMC7394547 DOI: 10.7554/elife.55092] [Citation(s) in RCA: 118] [Impact Index Per Article: 29.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2020] [Accepted: 07/06/2020] [Indexed: 12/13/2022] Open
Abstract
Deep non-rapid eye movement sleep (NREM) and general anesthesia with propofol are prominent states of reduced arousal linked to the occurrence of synchronized oscillations in the electroencephalogram (EEG). Although rapid eye movement (REM) sleep is also associated with diminished arousal levels, it is characterized by a desynchronized, 'wake-like' EEG. This observation implies that reduced arousal states are not necessarily only defined by synchronous oscillatory activity. Using intracranial and surface EEG recordings in four independent data sets, we demonstrate that the 1/f spectral slope of the electrophysiological power spectrum, which reflects the non-oscillatory, scale-free component of neural activity, delineates wakefulness from propofol anesthesia, NREM and REM sleep. Critically, the spectral slope discriminates wakefulness from REM sleep solely based on the neurophysiological brain state. Taken together, our findings describe a common electrophysiological marker that tracks states of reduced arousal, including different sleep stages as well as anesthesia in humans.
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Affiliation(s)
- Janna D Lendner
- Helen Wills Neuroscience Institute, University of California, BerkeleyBerkeleyUnited States
- Department of Anesthesiology and Intensive Care Medicine, University Medical Center TuebingenTuebingenGermany
| | - Randolph F Helfrich
- Hertie-Institute for Clinical Brain ResearchTuebingenGermany
- Department of Neurology and Epileptology, University Medical Center TuebingenTuebingenGermany
| | - Bryce A Mander
- Department of Psychiatry and Human Behavior, University of California, IrvineIrvineUnited States
| | - Luis Romundstad
- Department of Anesthesiology, University of Oslo Medical CenterOsloNorway
| | - Jack J Lin
- Department of Neurology, University of California, IrvineIrvineUnited States
| | - Matthew P Walker
- Helen Wills Neuroscience Institute, University of California, BerkeleyBerkeleyUnited States
- Department of Psychology, University of California, BerkeleyBerkeleyUnited States
| | - Pal G Larsson
- Department of Neurosurgery, University of Oslo Medical CenterOsloNorway
| | - Robert T Knight
- Helen Wills Neuroscience Institute, University of California, BerkeleyBerkeleyUnited States
- Department of Psychology, University of California, BerkeleyBerkeleyUnited States
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Paljakka T, Rissanen K, Vanhatalo A, Salmon Y, Jyske T, Prisle NL, Linnakoski R, Lin JJ, Laakso T, Kasanen R, Bäck J, Hölttä T. Is Decreased Xylem Sap Surface Tension Associated With Embolism and Loss of Xylem Hydraulic Conductivity in Pathogen-Infected Norway Spruce Saplings? Front Plant Sci 2020; 11:1090. [PMID: 32765568 PMCID: PMC7378778 DOI: 10.3389/fpls.2020.01090] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/02/2019] [Accepted: 07/02/2020] [Indexed: 05/23/2023]
Abstract
Increased abiotic stress along with increasing temperatures, dry periods and forest disturbances may favor biotic stressors such as simultaneous invasion of bark beetle and ophiostomatoid fungi. It is not fully understood how tree desiccation is associated with colonization of sapwood by fungi. A decrease in xylem sap surface tension (σxylem) as a result of infection has been hypothesized to cause xylem embolism by lowering the threshold for air-seeding at the pits between conduits and disruptions in tree water transport. However, this hypothesis has not yet been tested. We investigated tree water relations by measuring the stem xylem hydraulic conductivity (Kstem), σxylem, stem relative water content (RWCstem), and water potential (Ψstem), and canopy conductance (gcanopy), as well as the compound composition in xylem sap in Norway spruce (Picea abies) saplings. We conducted our measurements at the later stage of Endoconidiophora polonica infection when visible symptoms had occurred in xylem. Saplings of two clones (44 trees altogether) were allocated to treatments of inoculated, wounded control and intact control trees in a greenhouse. The saplings were destructively sampled every second week during summer 2016. σxylem, Kstem and RWCstem decreased following the inoculation, which may indicate that decreased σxylem resulted in increased embolism. gcanopy did not differ between treatments indicating that stomata responded to Ψstem rather than to embolism formation. Concentrations of quinic acid, myo-inositol, sucrose and alkylphenol increased in the xylem sap of inoculated trees. Myo-inositol concentrations also correlated negatively with σxylem and Kstem. Our study is a preliminary investigation of the role of σxylem in E. polonica infected trees based on previous hypotheses. The results suggest that E. polonica infection can lead to a simultaneous decrease in xylem sap surface tension and a decline in tree hydraulic conductivity, thus hampering tree water transport.
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Affiliation(s)
- Teemu Paljakka
- Faculty of Agriculture and Forestry, Institute for Atmospheric and Earth System Research/Forest Sciences, University of Helsinki, Helsinki, Finland
| | - Kaisa Rissanen
- Faculty of Agriculture and Forestry, Institute for Atmospheric and Earth System Research/Forest Sciences, University of Helsinki, Helsinki, Finland
| | - Anni Vanhatalo
- Faculty of Agriculture and Forestry, Institute for Atmospheric and Earth System Research/Forest Sciences, University of Helsinki, Helsinki, Finland
| | - Yann Salmon
- Faculty of Agriculture and Forestry, Institute for Atmospheric and Earth System Research/Forest Sciences, University of Helsinki, Helsinki, Finland
- Faculty of Science, Institute for Atmospheric and Earth System Research/Physics, University of Helsinki, Helsinki, Finland
| | - Tuula Jyske
- Natural Resources Institute Finland (Luke), Espoo, Finland
| | - Nønne L. Prisle
- Nano and Molecular Systems Research Unit, University of Oulu, Oulu, Finland
| | | | - Jack J. Lin
- Nano and Molecular Systems Research Unit, University of Oulu, Oulu, Finland
| | - Tapio Laakso
- Natural Resources Institute Finland (Luke), Espoo, Finland
| | - Risto Kasanen
- Forest Sciences/Faculty of Agriculture and Forestry, University of Helsinki, Helsinki, Finland
| | - Jaana Bäck
- Faculty of Agriculture and Forestry, Institute for Atmospheric and Earth System Research/Forest Sciences, University of Helsinki, Helsinki, Finland
- Forest Sciences/Faculty of Agriculture and Forestry, University of Helsinki, Helsinki, Finland
| | - Teemu Hölttä
- Faculty of Agriculture and Forestry, Institute for Atmospheric and Earth System Research/Forest Sciences, University of Helsinki, Helsinki, Finland
- Forest Sciences/Faculty of Agriculture and Forestry, University of Helsinki, Helsinki, Finland
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Abstract
In recent years, the research of spatiotemporal clustering of disease is attracting more and more attention, which plays an important role in understanding the temporal and spatial distribution characteristics of diseases, and can provide references for the etiology exploration and prevention and control of diseases. In order to better understand the research methods of spatiotemporal clustering of diseases and its application progress, this paper summarizes the statistical methods commonly used in relevant researches at demestic and abroad from three aspects of temporal clustering, spatial clustering and spatiotemporal clustering of diseases.
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Affiliation(s)
- J J Lin
- Department of Epidemiology and Biostatistics, Zhejiang University, Hangzhou 310058, China
| | - T W Zhang
- Department of Epidemiology and Biostatistics, Zhejiang University, Hangzhou 310058, China
| | - X Y Li
- Department of Epidemiology and Biostatistics, Zhejiang University, Hangzhou 310058, China
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41
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Charupanit K, Sen-Gupta I, Lin JJ, Lopour BA. Detection of anomalous high-frequency events in human intracranial EEG. Epilepsia Open 2020; 5:263-273. [PMID: 32524052 PMCID: PMC7278560 DOI: 10.1002/epi4.12397] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2019] [Revised: 04/09/2020] [Accepted: 04/09/2020] [Indexed: 11/23/2022] Open
Abstract
Objective High‐frequency oscillations (HFOs) are a promising biomarker for the epileptogenic zone. However, no physiological definition of an HFO has been established, so detection relies on the empirical definition of an HFO derived from visual observation. This can bias estimates of HFO features such as amplitude and duration, thereby hindering their utility as biomarkers. Therefore, we set out to develop an algorithm that detects high‐frequency events in the intracranial EEG that are morphologically distinct from background without requiring assumptions about event amplitude or shape. Method We propose the anomaly detection algorithm (ADA), which uses unsupervised machine learning to identify segments of data that are distinct from the background. We apply ADA and a standard HFO detector using a root mean square amplitude threshold to intracranial EEG from 11 patients undergoing evaluation for epilepsy surgery. The rate, amplitude, and duration of the detected events and the percent overlap between the two detectors are compared. Result In the seizure onset zone (SOZ), ADA detected a subset of conventional HFOs. In non‐SOZ channels, ADA detected at least twice as many events as the standard approach, including some conventional HFOs; however, ADA also identified many low and intermediate amplitude events missed by the standard amplitude‐based method. The rate of ADA events was similar across all channels; however, the amplitude of ADA events was significantly higher in SOZ channels (P < .0045), and the amplitude measurement was more stable over time than the HFO rate, as indicated by a lower coefficient of variation (P < .0125). Significance ADA does not require human supervision, parameter optimization, or prior assumptions about event shape, amplitude, or duration. Our results suggest that the algorithm's estimate of event amplitude may differentiate SOZ and non‐SOZ channels. Further studies will examine the utility of HFO amplitude as a biomarker for epilepsy surgical outcome.
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Affiliation(s)
- Krit Charupanit
- Biomedical Engineering University of California, Irvine Irvine CA USA
| | - Indranil Sen-Gupta
- Comprehensive Epilepsy Program Department of Neurology University of California, Irvine Irvine CA USA
| | - Jack J Lin
- Biomedical Engineering University of California, Irvine Irvine CA USA.,Comprehensive Epilepsy Program Department of Neurology University of California, Irvine Irvine CA USA
| | - Beth A Lopour
- Biomedical Engineering University of California, Irvine Irvine CA USA
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42
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Lin JJ, Kristensen TB, Calderón SM, Malila J, Prisle NL. Effects of surface tension time-evolution for CCN activation of a complex organic surfactant. Environ Sci Process Impacts 2020; 22:271-284. [PMID: 31912080 DOI: 10.1039/c9em00426b] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
The physical processes and time scales underlying the evolution of surface tension in atmospheric solution droplets are largely unaccounted for in present models describing cloud droplet formation. Adsorption of surface-active molecules at the surface of a solution droplet depresses the droplet surface tension but also depletes solute from the droplet bulk, which have opposing and sometimes canceling effects in cloud droplet formation. In this work, we study the effect of time-evolving surface tension for cloud droplet activation of particles composed of Nordic Aquatic Fulvic Acid (NAFA) mixed with sodium chloride (NaCl). We model the formation of cloud droplets using Köhler theory with surface tension depression and bulk/surface partitioning evaluated from two different thermodynamic surface models. Continuous ternary parameterizations were constructed from surface tension measurements of macroscopic droplets at different time steps after the formation of a droplet surface. The predicted results are compared to previous measurements of mixed NAFA-NaCl cloud condensation nuclei (CCN) activity and a bulk solution model that does not take the NAFA bulk/surface partitioning equilibrium into account. Whereas the bulk model shows a trend in cloud droplet formation following that of macroscopic surface tension depression with time, the variation with time essentially disappears when bulk/surface partitioning is taken explicitly into account during droplet activation. For all equilibrium time steps considered, the effect of surface tension depression in the NAFA-NaCl system is counteracted by the depletion of solute from the finite-sized droplet bulk phase. Our study highlights that a comprehensive data set is necessary to obtain continuous parameterizations of surface tension and other solution properties required to fully account for the bulk/surface partitioning in growing droplets. To our knowledge, no similar data set currently exists for other aqueous organic systems of atmospheric interest. Additional work is necessary to deconvolve the effects of bulk/surface partitioning in the context of time-evolution on cloud droplet activation and to determine whether the results presented here can be further generalized.
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Affiliation(s)
- Jack J Lin
- Nano and Molecular Systems Research Unit, University of Oulu, P. O. Box 3000, Oulu, FI-90014, Finland.
| | | | - Silvia M Calderón
- Nano and Molecular Systems Research Unit, University of Oulu, P. O. Box 3000, Oulu, FI-90014, Finland.
| | - Jussi Malila
- Nano and Molecular Systems Research Unit, University of Oulu, P. O. Box 3000, Oulu, FI-90014, Finland.
| | - Nønne L Prisle
- Nano and Molecular Systems Research Unit, University of Oulu, P. O. Box 3000, Oulu, FI-90014, Finland.
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43
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Elm J, Hyttinen N, Lin JJ, Kurtén T, Prisle NL. Strong Even/Odd Pattern in the Computed Gas-Phase Stability of Dicarboxylic Acid Dimers: Implications for Condensation Thermodynamics. J Phys Chem A 2019; 123:9594-9599. [PMID: 31610657 DOI: 10.1021/acs.jpca.9b08020] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The physical properties of small straight-chain dicarboxylic acids are well known to exhibit even/odd alternations with respect to the carbon chain length. For example, odd numbered diacids have lower melting points and higher saturation vapor pressures than adjacent even numbered diacids. This alternation has previously been explained in terms of solid-state properties, such as higher torsional strain of odd number diacids. Using quantum chemical methods, we demonstrate an additional contribution to this alternation in properties resulting from gas-phase dimer formation. Due to a combination of hydrogen bond strength and torsional strain, dimer formation in the gas phase occurs efficiently for glutaric acid (C5) and pimelic acid (C7) but is unfavorable for succinic acid (C4) and adipic acid (C6). Our results indicate that a significant fraction of the total atmospheric gas-phase concentration of glutaric and pimelic acid may consist of dimers.
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Affiliation(s)
- Jonas Elm
- Department of Chemistry and iClimate , Aarhus University , Langelandsgade 140 , 8000 Aarhus C , Denmark
| | - Noora Hyttinen
- Nano and Molecular Systems Research Unit , University of Oulu , P.O. Box 3000, 90014 Oulu , Finland
| | - Jack J Lin
- Nano and Molecular Systems Research Unit , University of Oulu , P.O. Box 3000, 90014 Oulu , Finland
| | - Theo Kurtén
- Department of Chemistry and Institute for Atmospheric and Earth System Research (INAR) , University of Helsinki , P.O. Box 55, FI-00014 Helsinki , Finland
| | - Nønne L Prisle
- Nano and Molecular Systems Research Unit , University of Oulu , P.O. Box 3000, 90014 Oulu , Finland
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44
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Tran DK, Paff M, Mnatsakanyan L, Sen-Gupta I, Lin JJ, Hsu FPK, Vadera S. A Novel Robotic-Assisted Technique to Implant the Responsive Neurostimulation System. Oper Neurosurg (Hagerstown) 2019; 18:728-735. [DOI: 10.1093/ons/opz226] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2018] [Accepted: 05/29/2019] [Indexed: 11/14/2022] Open
Abstract
Abstract
BACKGROUND
The responsive neurostimulation system (RNS) (NeuroPace Inc, Mountain View, California) was approved as an adjunctive therapy for medically refractory focal epilepsy. RNS detects epileptiform patterns and delivers electrical stimulation to abort seizures.
OBJECTIVE
To describe a novel technique of RNS lead implantation using robotic-assisted targeting of ictal-onset zones based on stereoelectroencephalography (sEEG) localization. Secondary objectives are to report the accuracy of robotic-assisted lead implantation using the ROSA robot as well as to report the clinical outcome achieved after RNS implantation by this method.
METHODS
A total of 16 patients with medically refractory focal epilepsy underwent sEEG implantation for ictal-onset localization followed by robotic RNS implantation. The electrode most correlative with ictal onset on sEEG was chosen as the target for the RNS electrode. Seizure control was measured at 6-mo and 1-yr follow-up. Ictal-onset electrocorticography (ECoG) data from RNS were compared with ictal onset from sEEG leads based on calculations of lead target to actual lead location from the ROSA robot.
RESULTS
At 6-mo follow-up, the average percent seizure reduction was 82% based upon self-reported seizure diaries. At 1-yr follow-up, 8 patients had an average of 90% seizure reduction. The location of seizure onset from ECoG data show similar onset from sEEG leads within 0.165-mm discrepancy.
CONCLUSION
The ROSA robot provides an ideal method for targeting subcortical ictal-onset zones. This method of RNS lead implantation achieves high accuracy and is associated with favorable clinical outcomes.
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Affiliation(s)
- Diem Kieu Tran
- Department of Neurological Surgery, School of Medicine, University of California, Irvine, Orange, California
| | - Michelle Paff
- Department of Neurological Surgery, School of Medicine, University of California, Irvine, Orange, California
| | - Lilit Mnatsakanyan
- Department of Neurology, School of Medicine, University of California, Irvine, Orange, California
| | - Indranil Sen-Gupta
- Department of Neurology, School of Medicine, University of California, Irvine, Orange, California
| | - Jack J Lin
- Department of Neurology, School of Medicine, University of California, Irvine, Orange, California
| | - Frank P K Hsu
- Department of Neurological Surgery, School of Medicine, University of California, Irvine, Orange, California
| | - Sumeet Vadera
- Department of Neurological Surgery, School of Medicine, University of California, Irvine, Orange, California
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45
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Garcia-Ramos C, Dabbs K, Lin JJ, Jones JE, Stafstrom CE, Hsu DA, Meyerand ME, Prabhakaran V, Hermann BP. Network analysis of prospective brain development in youth with benign epilepsy with centrotemporal spikes and its relationship to cognition. Epilepsia 2019; 60:1838-1848. [PMID: 31347155 PMCID: PMC7394051 DOI: 10.1111/epi.16290] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2019] [Revised: 06/25/2019] [Accepted: 06/25/2019] [Indexed: 12/26/2022]
Abstract
OBJECTIVE Benign epilepsy with centrotemporal spikes (BECTS) is the most common childhood idiopathic localization-related epilepsy syndrome. BECTS presents normal routine magnetic resonance imaging (MRI); however, quantitative analytic techniques have captured subtle cortical and subcortical magnetic resonance anomalies. Network science, including graph theory (GT) analyses, facilitates understanding of brain covariance patterns, potentially informing in important ways how this common self-limiting epilepsy syndrome may impact normal patterns of brain and cognitive development. METHODS GT analyses examined the developmental covariance among cortical and subcortical regions in children with new/recent onset BECTS (n = 19) and typically developing healthy controls (n = 22) who underwent high-resolution MRI and cognitive assessment at baseline and 2 years later. Global (transitivity, global efficiency, and modularity index [Q]) and regional measures (local efficiency and hubs) were investigated to characterize network development in each group. Associations between baseline-based GT measures and cognition at both time points addressed the implications of GT analyses for cognition and prospective cognitive development. Furthermore, an individual contribution measure was investigated, reflecting how important for cognition it is for BECTS to resemble the correlation matrices of controls. RESULTS Groups exhibited similar Q and overall network configuration, with BECTS presenting significantly higher transitivity and both global and local efficiency. Furthermore, both groups presented a similar number of hubs, with BECTS showing a higher number in temporal lobe regions compared to controls. The investigated measures were negatively associated with 2-year cognitive outcomes in BECTS. SIGNIFICANCE Children with BECTS present a higher-than-normal global developmental configuration compared to controls, along with divergence from normality in terms of regional configuration. Baseline GT measures demonstrate potential as a cognitive biomarker to predict cognitive outcome in BECTS 2 years after diagnosis. Similarities and differences in developmental network configurations and their implications for cognition and behavior across common epilepsy syndromes are of theoretical interest and clinical relevance.
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Affiliation(s)
- Camille Garcia-Ramos
- Department of Medical Physics, School of Medicine and Public Health, University of Wisconsin, Madison, Wisconsin
| | - Kevin Dabbs
- Department of Neurology, School of Medicine and Public Health, University of Wisconsin, Madison, Wisconsin
| | - Jack J Lin
- Department of Neurology, University of California, Irvine, Irvine, California
| | - Jana E Jones
- Department of Neurology, School of Medicine and Public Health, University of Wisconsin, Madison, Wisconsin
| | - Carl E Stafstrom
- Department of Neurology, Johns Hopkins Medical School, Baltimore, Maryland
| | - David A Hsu
- Department of Neurology, School of Medicine and Public Health, University of Wisconsin, Madison, Wisconsin
| | - Mary Elizabeth Meyerand
- Department of Biomedical Engineering, School of Medicine and Public Health, University of Wisconsin, Madison, Wisconsin
| | - Vivek Prabhakaran
- Department of Medical Physics, School of Medicine and Public Health, University of Wisconsin, Madison, Wisconsin.,Department of Radiology, School of Medicine and Public Health, University of Wisconsin, Madison, Wisconsin
| | - Bruce P Hermann
- Department of Neurology, School of Medicine and Public Health, University of Wisconsin, Madison, Wisconsin
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Bonilha L, Small SS, Lin JJ. Editorial for the special issue on language and epilepsy. Brain Lang 2019; 193:1-3. [PMID: 30929763 DOI: 10.1016/j.bandl.2019.03.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Affiliation(s)
- Leonardo Bonilha
- Department of Neurology, Medical University of South Carolina, Charleston, SC, United States.
| | - Steven S Small
- Department of Neurology, School of Medicine, University of California Irvine, Irvine, CA, United States
| | - Jack J Lin
- Department of Neurology, School of Medicine, University of California Irvine, Irvine, CA, United States; Department of Biomedical Engineering, The Henry Samueli School of Engineering, University of California Irvine, Irvine, CA, United States
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47
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Jackson DC, Jones JE, Hsu DA, Stafstrom CE, Lin JJ, Almane D, Koehn MA, Seidenberg M, Hermann BP. Language function in childhood idiopathic epilepsy syndromes. Brain Lang 2019; 193:4-9. [PMID: 29610055 DOI: 10.1016/j.bandl.2017.12.005] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2016] [Accepted: 12/14/2017] [Indexed: 06/08/2023]
Abstract
PURPOSE To examine the impact of diverse syndromes of focal and generalized epilepsy on language function in children with new and recent onset epilepsy. Of special interest was the degree of shared language abnormality across epilepsy syndromes and the unique effects associated with specific epilepsy syndromes. METHODS Participants were 136 youth with new or recent-onset (diagnosis within past 12 months) epilepsy and 107 healthy first-degree cousin controls. The participants with epilepsy included 20 with Temporal Lobe Epilepsy (TLE; M age = 12.99 years, SD = 3.11), 41 with Benign Epilepsy with Centrotemporal Spikes (BECTS; M age = 10.32, SD = 1.67), 42 with Juvenile Myoclonic Epilepsy (JME; M age = 14.85, SD = 2.75) and 33 with absence epilepsy (M age = 10.55, SD = 2.76). All children were administered a comprehensive test battery which included multiple measures of language and language-dependent abilities (i.e., verbal intelligence, vocabulary, verbal reasoning, object naming, reception word recognition, word reading, spelling, lexical and semantic fluency, verbal list learning and delayed verbal memory). Test scores were adjusted for age and gender and analyzed via MANCOVA. RESULTS Language abnormalities were found in all epilepsy patient groups. The most broadly affected children were those with TLE and absence epilepsy, whose performance differed significantly from controls on 8 of 11 and 9 of 11 tests respectively. Although children with JME and BECTS were less affected, significant differences from controls were found on 4 of 11 tests each. While each group had a unique profile of language deficits, commonalities were apparent across both idiopathic generalized and localization-related diagnostic categories. DISCUSSION The localization related and generalized idiopathic childhood epilepsies examined here were associated with impact on diverse language abilities early in the course of the disorder.
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Affiliation(s)
- D C Jackson
- Department of Neurology, University of Wisconsin School of Medicine and Public Health, Madison, WI, United States
| | - J E Jones
- Department of Neurology, University of Wisconsin School of Medicine and Public Health, Madison, WI, United States
| | - D A Hsu
- Department of Neurology, University of Wisconsin School of Medicine and Public Health, Madison, WI, United States
| | - C E Stafstrom
- Department of Neurology, Johns Hopkins University, Baltimore, MD, United States
| | - J J Lin
- Department of Clinical Neurology, University of California - Irvine, Irvine, CA, United States
| | - D Almane
- Department of Neurology, University of Wisconsin School of Medicine and Public Health, Madison, WI, United States
| | - M A Koehn
- Epilepsy Center, Marshfield Clinic, Marshfield, WI, United States
| | - M Seidenberg
- Department of Psychology, Rosalind Franklin School of Medicine and Science, North Chicago, IL, United States
| | - B P Hermann
- Department of Neurology, University of Wisconsin School of Medicine and Public Health, Madison, WI, United States.
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48
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Perry A, Stiso J, Chang EF, Lin JJ, Parvizi J, Knight RT. Mirroring in the Human Brain: Deciphering the Spatial-Temporal Patterns of the Human Mirror Neuron System. Cereb Cortex 2019; 28:1039-1048. [PMID: 28137724 DOI: 10.1093/cercor/bhx013] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2016] [Accepted: 01/11/2017] [Indexed: 11/14/2022] Open
Abstract
Embodied theories of cognition emphasize the central role of sensorimotor transformations in the representation of others' actions. Support for these theories is derived from the discovery of the mirror neuron system (MNS) in primates, from noninvasive techniques in humans, and from a limited number of intracranial studies. To understand the neural dynamics of the human MNS, more studies with precise spatial and temporal resolutions are essential. We used electrocorticography to define activation patterns in sensorimotor, parietal and/or frontal neuronal populations, during a viewing and grasping task. Our results show robust high gamma activation for both conditions in classic MNS sites. Furthermore, we provide novel evidence for 2 different populations of neurons: sites that were only active for viewing and grasping ("pure mirroring") and sites that were also active between viewing and grasping, and perhaps serve a more general attentional role. Lastly, a subgroup of parietal electrodes showed earlier peaks than all other regions. These results highlight the complexity of spatial-temporal patterns within the MNS and provide a critical link between single-unit research in monkeys and noninvasive techniques in human.
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Affiliation(s)
- Anat Perry
- The Psychology Department, University of California at Berkeley, Berkeley, CA 94720, USA.,Helen Wills Neuroscience Institute, University of California at Berkeley, Berkeley, CA 94720, USA
| | - Jennifer Stiso
- Helen Wills Neuroscience Institute, University of Californiaat Berkeley, Berkeley, CA 94720, USA
| | - Edward F Chang
- Department of Neurological Surgery and Physiology, University of California, San Francisco, CA 94143, USA
| | - Jack J Lin
- Comprehensive Epilepsy Program, University of California at Irvine, Irvine, CA 92868, USA
| | - Josef Parvizi
- Stanford Human Intracranial Cognitive Electrophysiology Program (SHICEP) and the Department of Neurology and Neurological Sciences, Stanford University Medical Center, Stanford, CA 94305, USA
| | - Robert T Knight
- The Psychology Department, University of California at Berkeley, Berkeley, CA 94720, USA.,Helen Wills Neuroscience Institute, University of California at Berkeley, Berkeley, CA 94720, USA.,Department of Neurological Surgery and Physiology, University of California, San Francisco, CA 94143, USA
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49
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Stolk A, Griffin S, van der Meij R, Dewar C, Saez I, Lin JJ, Piantoni G, Schoffelen JM, Knight RT, Oostenveld R. Integrated analysis of anatomical and electrophysiological human intracranial data. Nat Protoc 2019; 13:1699-1723. [PMID: 29988107 PMCID: PMC6548463 DOI: 10.1038/s41596-018-0009-6] [Citation(s) in RCA: 84] [Impact Index Per Article: 16.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Human intracranial electroencephalography (iEEG) recordings provide data with much greater spatiotemporal precision than is possible from data obtained using scalp EEG, magnetoencephalography (MEG), or functional MRI. Until recently, the fusion of anatomical data (MRI and computed tomography (CT) images) with electrophysiological data and their subsequent analysis have required the use of technologically and conceptually challenging combinations of software. Here, we describe a comprehensive protocol that enables complex raw human iEEG data to be converted into more readily comprehensible illustrative representations. The protocol uses an open-source toolbox for electrophysiological data analysis (FieldTrip). This allows iEEG researchers to build on a continuously growing body of scriptable and reproducible analysis methods that, over the past decade, have been developed and used by a large research community. In this protocol, we describe how to analyze complex iEEG datasets by providing an intuitive and rapid approach that can handle both neuroanatomical information and large electrophysiological datasets. We provide a worked example using an example dataset. We also explain how to automate the protocol and adjust the settings to enable analysis of iEEG datasets with other characteristics. The protocol can be implemented by a graduate student or postdoctoral fellow with minimal MATLAB experience and takes approximately an hour to execute, excluding the automated cortical surface extraction.
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Affiliation(s)
- Arjen Stolk
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA. .,Donders Institute for Brain, Cognition, and Behaviour, Radboud University, Nijmegen, The Netherlands.
| | - Sandon Griffin
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA
| | - Roemer van der Meij
- Department of Cognitive Science, University of California, San Diego, La Jolla, CA, USA
| | - Callum Dewar
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA.,College of Medicine, University of Illinois, Chicago, IL, USA
| | - Ignacio Saez
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA
| | - Jack J Lin
- Department of Neurology, University of California, Irvine, Irvine, CA, USA
| | - Giovanni Piantoni
- Department of Neurology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA
| | - Jan-Mathijs Schoffelen
- Donders Institute for Brain, Cognition, and Behaviour, Radboud University, Nijmegen, The Netherlands
| | - Robert T Knight
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA.,Department of Psychology, University of California, Berkeley, Berkeley, CA, USA
| | - Robert Oostenveld
- Donders Institute for Brain, Cognition, and Behaviour, Radboud University, Nijmegen, The Netherlands.,NatMEG, Karolinska Institutet, Stockholm, Sweden
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50
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Zheng J, Stevenson RF, Mander BA, Mnatsakanyan L, Hsu FPK, Vadera S, Knight RT, Yassa MA, Lin JJ. Multiplexing of Theta and Alpha Rhythms in the Amygdala-Hippocampal Circuit Supports Pattern Separation of Emotional Information. Neuron 2019; 102:887-898.e5. [PMID: 30979537 DOI: 10.1016/j.neuron.2019.03.025] [Citation(s) in RCA: 57] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2018] [Revised: 11/02/2018] [Accepted: 03/18/2019] [Indexed: 12/22/2022]
Abstract
How do we remember emotional events? While emotion often leads to vivid recollection, the precision of emotional memories can be degraded, especially when discriminating among overlapping experiences in memory (i.e., pattern separation). Communication between the amygdala and the hippocampus has been proposed to support emotional memory, but the exact neural mechanisms remain unclear. Here, we used intracranial recordings in pre-surgical epilepsy patients to show that successful pattern separation of emotional stimuli is associated with theta band (3-7 Hz)-coordinated bidirectional interactions between the amygdala and the hippocampus. In contrast, discrimination errors (i.e., failure to discriminate similar stimuli) were associated with alpha band (7-13 Hz)-coordinated unidirectional influence from the amygdala to the hippocampus. These findings imply that alpha band synchrony may impair discrimination of similar emotional events via the amygdala-hippocampal directional coupling, which suggests a target for treatments of psychiatric conditions such as post-traumatic stress disorder, in which aversive experiences are often overgeneralized.
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Affiliation(s)
- Jie Zheng
- Department of Biomedical Engineering, University of California, Irvine, Irvine, CA 92697, USA
| | - Rebecca F Stevenson
- Department of Neurobiology and Behavior, University of California, Irvine, Irvine, CA 92697, USA; Center for the Neurobiology of Learning and Memory, University of California, Irvine, Irvine, CA 92697, USA
| | - Bryce A Mander
- Center for the Neurobiology of Learning and Memory, University of California, Irvine, Irvine, CA 92697, USA; Department of Psychiatry and Human Behavior, University of California, Irvine, Irvine, CA 92697, USA
| | - Lilit Mnatsakanyan
- Comprehensive Epilepsy Program, Department of Neurology, University of California, Irvine, Irvine, CA 92868, USA
| | - Frank P K Hsu
- Department of Neurological Surgery, University of California, Irvine, Irvine, CA 92868, USA
| | - Sumeet Vadera
- Department of Neurological Surgery, University of California, Irvine, Irvine, CA 92868, USA
| | - Robert T Knight
- Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA 94720, USA; Department of Psychology, University of California, Berkeley, Berkeley, CA 94720, USA
| | - Michael A Yassa
- Department of Neurobiology and Behavior, University of California, Irvine, Irvine, CA 92697, USA; Center for the Neurobiology of Learning and Memory, University of California, Irvine, Irvine, CA 92697, USA; Department of Psychiatry and Human Behavior, University of California, Irvine, Irvine, CA 92697, USA.
| | - Jack J Lin
- Department of Biomedical Engineering, University of California, Irvine, Irvine, CA 92697, USA; Center for the Neurobiology of Learning and Memory, University of California, Irvine, Irvine, CA 92697, USA; Comprehensive Epilepsy Program, Department of Neurology, University of California, Irvine, Irvine, CA 92868, USA.
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