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Liu M, Chen L, Gu S, Zhang A, Tong M, Wang S, Wang J, Zhu Y, Zhang J, Sun Y, Guo Y, Li R. Arabidopsis TIC236 contributes to proplastid development and chloroplast biogenesis during embryogenesis. FRONTIERS IN PLANT SCIENCE 2024; 15:1424994. [PMID: 39246812 PMCID: PMC11377289 DOI: 10.3389/fpls.2024.1424994] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/29/2024] [Accepted: 08/01/2024] [Indexed: 09/10/2024]
Abstract
Plastids are essential, semi-autonomous organelles in plants that carry out a multitude of functions during development. Plastids existing in different subtypes are derived from proplastids progenitors and interconvert in response to environmental and growth cues. Most efforts focus on the differentiation from proplastid to other forms. However, the studies of proplastid development are insufficient and whether proplastid biogenesis affects plant growth is yet to be determined. Arabidopsis TIC236, a translocon component at the inner membrane of the chloroplast envelope, is critical for importing chloroplast-targeted preproteins and chloroplast division. In this study, we uncovered the fundamental influence of proplastid biogenesis on embryo development by exploring the function of TIC236 during embryogenesis. Widespread and strong expression of TIC236 was observed in leaves and embryos. The null mutant tic236 had an embryo-lethal phenotype, with cell division in the mutant embryos delayed starting at the octant stage and arrested at the globular stage. Transmission electron microscopy revealed enlarged proplastids with an aberrant inner structure at the dermatogen and globular stages that ultimately did not differentiate into chloroplasts. Additionally, the fluorescence signal distribution patterns of tic236 embryos carrying the pDR5rev::3xVENUS-N7, pPIN1::PIN1-GFP, pWOX5::GFP, and pSCR::H2B-YFP reporter systems were altered. Together, we provide genetic evidence supporting proplastid biogenesis plays a vital role in embryo development and TIC236 is identified as an indispensable player, ensuring normal proplastid development.
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Affiliation(s)
- Mei Liu
- Hebei Research Center of the Basic Discipline of Cell Biology, Hebei Normal University, Shijiazhuang, China
- Ministry of Education Key Laboratory of Molecular and Cellular Biology, Hebei Normal University, Shijiazhuang, China
- Hebei Collaboration Innovation Center for Cell Signaling and Environmental Adaptation, Hebei Normal University, Shijiazhuang, China
- Hebei Key Laboratory of Molecular and Cellular Biology, Hebei Normal University, Shijiazhuang, China
- College of Life Sciences, Hebei Normal University, Shijiazhuang, China
| | - Lifen Chen
- Hebei Research Center of the Basic Discipline of Cell Biology, Hebei Normal University, Shijiazhuang, China
- Ministry of Education Key Laboratory of Molecular and Cellular Biology, Hebei Normal University, Shijiazhuang, China
- Hebei Collaboration Innovation Center for Cell Signaling and Environmental Adaptation, Hebei Normal University, Shijiazhuang, China
- Hebei Key Laboratory of Molecular and Cellular Biology, Hebei Normal University, Shijiazhuang, China
- College of Life Sciences, Hebei Normal University, Shijiazhuang, China
| | - Shijie Gu
- Hebei Research Center of the Basic Discipline of Cell Biology, Hebei Normal University, Shijiazhuang, China
- Ministry of Education Key Laboratory of Molecular and Cellular Biology, Hebei Normal University, Shijiazhuang, China
- Hebei Collaboration Innovation Center for Cell Signaling and Environmental Adaptation, Hebei Normal University, Shijiazhuang, China
- Hebei Key Laboratory of Molecular and Cellular Biology, Hebei Normal University, Shijiazhuang, China
- College of Life Sciences, Hebei Normal University, Shijiazhuang, China
| | - Aiwei Zhang
- Hebei Research Center of the Basic Discipline of Cell Biology, Hebei Normal University, Shijiazhuang, China
- Ministry of Education Key Laboratory of Molecular and Cellular Biology, Hebei Normal University, Shijiazhuang, China
- Hebei Collaboration Innovation Center for Cell Signaling and Environmental Adaptation, Hebei Normal University, Shijiazhuang, China
- Hebei Key Laboratory of Molecular and Cellular Biology, Hebei Normal University, Shijiazhuang, China
- College of Life Sciences, Hebei Normal University, Shijiazhuang, China
| | - Mengjuan Tong
- Hebei Research Center of the Basic Discipline of Cell Biology, Hebei Normal University, Shijiazhuang, China
- Ministry of Education Key Laboratory of Molecular and Cellular Biology, Hebei Normal University, Shijiazhuang, China
- Hebei Collaboration Innovation Center for Cell Signaling and Environmental Adaptation, Hebei Normal University, Shijiazhuang, China
- Hebei Key Laboratory of Molecular and Cellular Biology, Hebei Normal University, Shijiazhuang, China
- College of Life Sciences, Hebei Normal University, Shijiazhuang, China
| | - Shuailei Wang
- Hebei Research Center of the Basic Discipline of Cell Biology, Hebei Normal University, Shijiazhuang, China
- Ministry of Education Key Laboratory of Molecular and Cellular Biology, Hebei Normal University, Shijiazhuang, China
- Hebei Collaboration Innovation Center for Cell Signaling and Environmental Adaptation, Hebei Normal University, Shijiazhuang, China
- Hebei Key Laboratory of Molecular and Cellular Biology, Hebei Normal University, Shijiazhuang, China
- College of Life Sciences, Hebei Normal University, Shijiazhuang, China
| | - Juntao Wang
- Hebei Research Center of the Basic Discipline of Cell Biology, Hebei Normal University, Shijiazhuang, China
- Ministry of Education Key Laboratory of Molecular and Cellular Biology, Hebei Normal University, Shijiazhuang, China
- Hebei Collaboration Innovation Center for Cell Signaling and Environmental Adaptation, Hebei Normal University, Shijiazhuang, China
- Hebei Key Laboratory of Molecular and Cellular Biology, Hebei Normal University, Shijiazhuang, China
- College of Life Sciences, Hebei Normal University, Shijiazhuang, China
| | - Yirui Zhu
- Hebei Research Center of the Basic Discipline of Cell Biology, Hebei Normal University, Shijiazhuang, China
- Ministry of Education Key Laboratory of Molecular and Cellular Biology, Hebei Normal University, Shijiazhuang, China
- Hebei Collaboration Innovation Center for Cell Signaling and Environmental Adaptation, Hebei Normal University, Shijiazhuang, China
- Hebei Key Laboratory of Molecular and Cellular Biology, Hebei Normal University, Shijiazhuang, China
- College of Life Sciences, Hebei Normal University, Shijiazhuang, China
| | - Jingsheng Zhang
- Hebei Research Center of the Basic Discipline of Cell Biology, Hebei Normal University, Shijiazhuang, China
- Ministry of Education Key Laboratory of Molecular and Cellular Biology, Hebei Normal University, Shijiazhuang, China
- Hebei Collaboration Innovation Center for Cell Signaling and Environmental Adaptation, Hebei Normal University, Shijiazhuang, China
- Hebei Key Laboratory of Molecular and Cellular Biology, Hebei Normal University, Shijiazhuang, China
- College of Life Sciences, Hebei Normal University, Shijiazhuang, China
| | - Yu Sun
- Hebei Research Center of the Basic Discipline of Cell Biology, Hebei Normal University, Shijiazhuang, China
- Ministry of Education Key Laboratory of Molecular and Cellular Biology, Hebei Normal University, Shijiazhuang, China
- Hebei Collaboration Innovation Center for Cell Signaling and Environmental Adaptation, Hebei Normal University, Shijiazhuang, China
- Hebei Key Laboratory of Molecular and Cellular Biology, Hebei Normal University, Shijiazhuang, China
- College of Life Sciences, Hebei Normal University, Shijiazhuang, China
| | - Yi Guo
- Hebei Research Center of the Basic Discipline of Cell Biology, Hebei Normal University, Shijiazhuang, China
- Ministry of Education Key Laboratory of Molecular and Cellular Biology, Hebei Normal University, Shijiazhuang, China
- Hebei Collaboration Innovation Center for Cell Signaling and Environmental Adaptation, Hebei Normal University, Shijiazhuang, China
- Hebei Key Laboratory of Molecular and Cellular Biology, Hebei Normal University, Shijiazhuang, China
- College of Life Sciences, Hebei Normal University, Shijiazhuang, China
| | - Rui Li
- Hebei Research Center of the Basic Discipline of Cell Biology, Hebei Normal University, Shijiazhuang, China
- Ministry of Education Key Laboratory of Molecular and Cellular Biology, Hebei Normal University, Shijiazhuang, China
- Hebei Collaboration Innovation Center for Cell Signaling and Environmental Adaptation, Hebei Normal University, Shijiazhuang, China
- Hebei Key Laboratory of Molecular and Cellular Biology, Hebei Normal University, Shijiazhuang, China
- College of Life Sciences, Hebei Normal University, Shijiazhuang, China
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Wang Y, Wang D, Du J, Wang Y, Shao C, Cui C, Xiao J, Wang X. Crucial role of SWL1 in chloroplast biogenesis and development in Arabidopsis thaliana. PLANT CELL REPORTS 2024; 43:135. [PMID: 38704787 DOI: 10.1007/s00299-024-03210-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/03/2024] [Accepted: 04/01/2024] [Indexed: 05/07/2024]
Abstract
KEY MESSAGE The disruption of the SWL1 gene leads to a significant down regulation of chloroplast and secondary metabolites gene expression in Arabidopsis thaliana. And finally results in a dysfunction of chloroplast and plant growth. Although the development of the chloroplast has been a consistent focus of research, the corresponding regulatory mechanisms remain unidentified. In this study, the CRISPR/Cas9 system was used to mutate the SWL1 gene, resulting in albino cotyledons and variegated true leaf phenotype. Confocal microscopy and western blot of chloroplast protein fractions revealed that SWL1 localized in the chloroplast stroma. Electron microscopy indicated chloroplasts in the cotyledons of swl1 lack well-defined grana and internal membrane structures, and similar structures have been detected in the albino region of variegated true leaves. Transcriptome analysis revealed that down regulation of chloroplast and nuclear gene expression related to chloroplast, including light harvesting complexes, porphyrin, chlorophyll metabolism and carbon metabolism in the swl1 compared to wild-type plant. In addition, proteomic analysis combined with western blot analysis, showed that a significant decrease in chloroplast proteins of swl1. Furthermore, the expression of genes associated with secondary metabolites and growth hormones was also reduced, which may be attributed to SWL1 associated with absorption and fixation of inorganic carbon during chloroplast development. Together, the above findings provide valuable information to elucidate the exact function of SWL1 in chloroplast biogenesis and development.
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Affiliation(s)
- Yue Wang
- State Key Laboratory of Efficient Production of Forest Resources, Beijing Forestry University, Beijing, 100083, China
- College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China
| | - Dong Wang
- State Key Laboratory of Efficient Production of Forest Resources, Beijing Forestry University, Beijing, 100083, China
- College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China
| | - Jingxia Du
- State Key Laboratory of Efficient Production of Forest Resources, Beijing Forestry University, Beijing, 100083, China
- College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China
| | - Yan Wang
- College of Agriculture and Forestry, Hebei North University, Zhangjiakou, 075000, China
| | - Chunxue Shao
- State Key Laboratory of Efficient Production of Forest Resources, Beijing Forestry University, Beijing, 100083, China
- College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China
| | - Chuwen Cui
- State Key Laboratory of Efficient Production of Forest Resources, Beijing Forestry University, Beijing, 100083, China
- College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China
| | - Jianwei Xiao
- State Key Laboratory of Efficient Production of Forest Resources, Beijing Forestry University, Beijing, 100083, China.
- College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China.
| | - Xinwei Wang
- College of Agriculture and Forestry, Hebei North University, Zhangjiakou, 075000, China.
- SENO Biotechnology Co., Ltd., Zhangjiakou, 075000, China.
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Chang CY, Chen LJ, Li HM. Chloroplast import motor subunits FtsHi1 and FtsHi2 are located on opposite sides of the inner envelope membrane. Proc Natl Acad Sci U S A 2023; 120:e2307747120. [PMID: 37669373 PMCID: PMC10500165 DOI: 10.1073/pnas.2307747120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2023] [Accepted: 08/07/2023] [Indexed: 09/07/2023] Open
Abstract
Protein import into chloroplasts is powered by ATP hydrolysis in the stroma. Establishing the identity and functional mechanism of the stromal ATPase motor that drives import is critical for understanding chloroplast biogenesis. Recently, a complex consisting of Ycf2, FtsHi1, FtsHi2, FtsHi4, FtsHi5, FtsH12, and malate dehydrogenase was shown to be important for chloroplast protein import, and it has been proposed to act as the motor driving protein translocation across the chloroplast envelope into the stroma. To gain further mechanistic understanding of how the motor functions, we performed membrane association and topology analyses on two of its subunits, FtsHi1 and FtsHi2. We isolated cDNA clones encoding FtsHi1 and FtsHi2 preproteins to perform in vitro import experiments in order to determine the exact size of each mature protein. We also generated antibodies against the C-termini of the proteins, i.e., where their ATPase domains reside. Protease treatments and alkaline and high-salt extractions of chloroplasts with imported and endogenous proteins revealed that FtsHi1 is an integral membrane protein with its C-terminal portion located in the intermembrane space of the envelope, not the stroma, whereas FtsHi2 is a soluble protein in the stroma. We further complemented an FtsHi1-knockout mutant with a C-terminally tagged FtsHi1 and obtained identical results for topological analyses. Our data indicate that the model of a single membrane-anchored pulling motor at the stromal side of the inner membrane needs to be revised and suggest that the Ycf2-FtsHi complex may have additional functions.
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Affiliation(s)
- Chia-Yun Chang
- Institute of Molecular Biology, Academia Sinica, Taipei11529, Taiwan
| | - Lih-Jen Chen
- Institute of Molecular Biology, Academia Sinica, Taipei11529, Taiwan
| | - Hsou-min Li
- Institute of Molecular Biology, Academia Sinica, Taipei11529, Taiwan
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4
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Valencia-Lozano E, Herrera-Isidrón L, Flores-López JA, Recoder-Meléndez OS, Uribe-López B, Barraza A, Cabrera-Ponce JL. Exploring the Potential Role of Ribosomal Proteins to Enhance Potato Resilience in the Face of Changing Climatic Conditions. Genes (Basel) 2023; 14:1463. [PMID: 37510367 PMCID: PMC10379993 DOI: 10.3390/genes14071463] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2023] [Revised: 07/05/2023] [Accepted: 07/14/2023] [Indexed: 07/30/2023] Open
Abstract
Potatoes have emerged as a key non-grain crop for food security worldwide. However, the looming threat of climate change poses significant risks to this vital food source, particularly through the projected reduction in crop yields under warmer temperatures. To mitigate potential crises, the development of potato varieties through genome editing holds great promise. In this study, we performed a comprehensive transcriptomic analysis to investigate microtuber development and identified several differentially expressed genes, with a particular focus on ribosomal proteins-RPL11, RPL29, RPL40 and RPL17. Our results reveal, by protein-protein interaction (PPI) network analyses, performed with the highest confidence in the STRING database platform (v11.5), the critical involvement of these ribosomal proteins in microtuber development, and highlighted their interaction with PEBP family members as potential microtuber activators. The elucidation of the molecular biological mechanisms governing ribosomal proteins will help improve the resilience of potato crops in the face of today's changing climatic conditions.
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Affiliation(s)
- Eliana Valencia-Lozano
- Departamento de Ingeniería Genética, Centro de Investigación y de Estudios Avanzados del IPN, Unidad Irapuato, Irapuato 36824, Guanajuato, Mexico
| | - Lisset Herrera-Isidrón
- Unidad Profesional Interdisciplinaria de Ingeniería Campus Guanajuato (UPIIG), Instituto Politécnico Nacional, Av. Mineral de Valenciana 200, Puerto Interior, Silao de la Victoria 36275, Guanajuato, Mexico
| | - Jorge Abraham Flores-López
- Unidad Profesional Interdisciplinaria de Ingeniería Campus Guanajuato (UPIIG), Instituto Politécnico Nacional, Av. Mineral de Valenciana 200, Puerto Interior, Silao de la Victoria 36275, Guanajuato, Mexico
| | - Osiel Salvador Recoder-Meléndez
- Unidad Profesional Interdisciplinaria de Ingeniería Campus Guanajuato (UPIIG), Instituto Politécnico Nacional, Av. Mineral de Valenciana 200, Puerto Interior, Silao de la Victoria 36275, Guanajuato, Mexico
| | - Braulio Uribe-López
- Unidad Profesional Interdisciplinaria de Ingeniería Campus Guanajuato (UPIIG), Instituto Politécnico Nacional, Av. Mineral de Valenciana 200, Puerto Interior, Silao de la Victoria 36275, Guanajuato, Mexico
| | - Aarón Barraza
- CONACYT-Centro de Investigaciones Biológicas del Noreste, SC., Instituto Politécnico Nacional 195, Playa Palo de Santa Rita Sur, La Paz CP 23096, Baja California Sur, Mexico
| | - José Luis Cabrera-Ponce
- Departamento de Ingeniería Genética, Centro de Investigación y de Estudios Avanzados del IPN, Unidad Irapuato, Irapuato 36824, Guanajuato, Mexico
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5
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Bojórquez-Orozco AM, Arce-Leal ÁP, Montes RAC, Santos-Cervantes ME, Cruz-Mendívil A, Méndez-Lozano J, Castillo AG, Rodríguez-Negrete EA, Leyva-López NE. Differential Expression of miRNAs Involved in Response to Candidatus Liberibacter asiaticus Infection in Mexican Lime at Early and Late Stages of Huanglongbing Disease. PLANTS (BASEL, SWITZERLAND) 2023; 12:1039. [PMID: 36903899 PMCID: PMC10005081 DOI: 10.3390/plants12051039] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/17/2022] [Revised: 02/13/2023] [Accepted: 02/21/2023] [Indexed: 06/18/2023]
Abstract
Huanglongbing (HLB) is one of the most destructive diseases threatening citriculture worldwide. This disease has been associated with α-proteobacteria species, namely Candidatus Liberibacter. Due to the unculturable nature of the causal agent, it has been difficult to mitigate the disease, and nowadays a cure is not available. MicroRNAs (miRNAs) are key regulators of gene expression, playing an essential role in abiotic and biotic stress in plants including antibacterial responses. However, knowledge derived from non-model systems including Candidatus Liberibacter asiaticus (CLas)-citrus pathosystem remains largely unknown. In this study, small RNA profiles from Mexican lime (Citrus aurantifolia) plants infected with CLas at asymptomatic and symptomatic stages were generated by sRNA-Seq, and miRNAs were obtained with ShortStack software. A total of 46 miRNAs, including 29 known miRNAs and 17 novel miRNAs, were identified in Mexican lime. Among them, six miRNAs were deregulated in the asymptomatic stage, highlighting the up regulation of two new miRNAs. Meanwhile, eight miRNAs were differentially expressed in the symptomatic stage of the disease. The target genes of miRNAs were related to protein modification, transcription factors, and enzyme-coding genes. Our results provide new insights into miRNA-mediated regulation in C. aurantifolia in response to CLas infection. This information will be useful to understand molecular mechanisms behind the defense and pathogenesis of HLB.
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Affiliation(s)
- Ana Marlenne Bojórquez-Orozco
- Instituto Politécnico Nacional, CIIDIR Unidad Sinaloa, Departamento de Biotecnología Agrícola, Guasave 81101, Sinaloa, Mexico
| | - Ángela Paulina Arce-Leal
- Instituto Politécnico Nacional, CIIDIR Unidad Sinaloa, Departamento de Biotecnología Agrícola, Guasave 81101, Sinaloa, Mexico
| | - Ricardo A. Chávez Montes
- Institute of Genomics for Crop Abiotic Stress Tolerance, Texas Tech University, Lubbock, TX 79409, USA
| | - María Elena Santos-Cervantes
- Instituto Politécnico Nacional, CIIDIR Unidad Sinaloa, Departamento de Biotecnología Agrícola, Guasave 81101, Sinaloa, Mexico
| | - Abraham Cruz-Mendívil
- CONACYT—Instituto Politécnico Nacional, CIIDIR Unidad Sinaloa, Departamento de Biotecnología Agrícola, Guasave 81101, Sinaloa, Mexico
| | - Jesús Méndez-Lozano
- Instituto Politécnico Nacional, CIIDIR Unidad Sinaloa, Departamento de Biotecnología Agrícola, Guasave 81101, Sinaloa, Mexico
| | - Araceli G. Castillo
- Instituto de Hortofruticultura Subtropical y Mediterránea “La Mayora” (IHSM), Universidad de Málaga-Consejo Superior de Investigaciones Científicas, Área de Genética, Facultad de Ciencias, E-29071 Málaga, Spain
| | - Edgar A. Rodríguez-Negrete
- Instituto Politécnico Nacional, CIIDIR Unidad Sinaloa, Departamento de Biotecnología Agrícola, Guasave 81101, Sinaloa, Mexico
| | - Norma Elena Leyva-López
- Instituto Politécnico Nacional, CIIDIR Unidad Sinaloa, Departamento de Biotecnología Agrícola, Guasave 81101, Sinaloa, Mexico
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Gebremeskel H, Umer MJ, Hongju Z, Li B, Shengjie Z, Yuan P, Xuqiang L, Nan H, Wenge L. Genetic mapping and molecular characterization of the delayed green gene dg in watermelon ( Citrullus lanatus). FRONTIERS IN PLANT SCIENCE 2023; 14:1152644. [PMID: 37152178 PMCID: PMC10158938 DOI: 10.3389/fpls.2023.1152644] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/28/2023] [Accepted: 04/03/2023] [Indexed: 05/09/2023]
Abstract
Leaf color mutants are common in higher plants that can be used as markers in crop breeding and are important tools in understanding regulatory mechanisms of chlorophyll biosynthesis and chloroplast development. Genetic analysis was performed by evaluating F1, F2 and BC1 populations derived from two parental lines (Charleston gray with green leaf color and Houlv with delayed green leaf color), suggesting that a single recessive gene controls the delayed green leaf color. In this study, the delayed green mutant showed a conditional pale green leaf color at the early leaf development but turned to green as the leaf development progressed. Delayed green leaf plants showed reduced pigment content, photosynthetic, chlorophyll fluorescence parameters, and impaired chloroplast development compared with green leaf plants. The delayed green (dg) locus was mapped to 7.48 Mb on chromosome 3 through bulk segregant analysis approach, and the gene controlling delayed green leaf color was narrowed to 53.54 kb between SNP130 and SNP135 markers containing three candidate genes. Sequence alignment of the three genes indicated that there was a single SNP mutation (G/A) in the coding region of ClCG03G010030 in the Houlv parent, which causes an amino acid change from Arginine to Lysine. The ClCG03G010030 gene encoded FtsH extracellular protease protein family is involved in early delayed green leaf development. The expression level of ClCG03G010030 was significantly reduced in delayed green leaf plants than in green leaf plants. These results indicated that the ClCG03G010030 might control watermelon green leaf color and the single SNP variation in ClCG03G010030 may result in early delayed green leaf color development during evolutionary process.
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Affiliation(s)
- Haileslassie Gebremeskel
- Henan Joint International Research Laboratory of South Asian Fruits and Cucurbits, Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou, China
- Department of Horticulture, Ethiopian Institute of Agricultural Research, Addis Ababa, Ethiopia
| | - Muhammad Jawad Umer
- Henan Joint International Research Laboratory of South Asian Fruits and Cucurbits, Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou, China
- State Key Laboratory of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, China
| | - Zhu Hongju
- Henan Joint International Research Laboratory of South Asian Fruits and Cucurbits, Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou, China
| | - Bingbing Li
- Henan Joint International Research Laboratory of South Asian Fruits and Cucurbits, Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou, China
| | - Zhao Shengjie
- Henan Joint International Research Laboratory of South Asian Fruits and Cucurbits, Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou, China
| | - Pingli Yuan
- Henan Joint International Research Laboratory of South Asian Fruits and Cucurbits, Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou, China
| | - Lu Xuqiang
- Henan Joint International Research Laboratory of South Asian Fruits and Cucurbits, Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou, China
| | - He Nan
- Henan Joint International Research Laboratory of South Asian Fruits and Cucurbits, Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou, China
| | - Liu Wenge
- Henan Joint International Research Laboratory of South Asian Fruits and Cucurbits, Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou, China
- *Correspondence: Liu Wenge,
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7
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Yi L, Liu B, Nixon PJ, Yu J, Chen F. Recent Advances in Understanding the Structural and Functional Evolution of FtsH Proteases. FRONTIERS IN PLANT SCIENCE 2022; 13:837528. [PMID: 35463435 PMCID: PMC9020784 DOI: 10.3389/fpls.2022.837528] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2021] [Accepted: 02/24/2022] [Indexed: 05/18/2023]
Abstract
The FtsH family of proteases are membrane-anchored, ATP-dependent, zinc metalloproteases. They are universally present in prokaryotes and the mitochondria and chloroplasts of eukaryotic cells. Most bacteria bear a single ftsH gene that produces hexameric homocomplexes with diverse house-keeping roles. However, in mitochondria, chloroplasts and cyanobacteria, multiple FtsH homologs form homo- and heterocomplexes with specialized functions in maintaining photosynthesis and respiration. The diversification of FtsH homologs combined with selective pairing of FtsH isomers is a versatile strategy to enable functional adaptation. In this article we summarize recent progress in understanding the evolution, structure and function of FtsH proteases with a focus on the role of FtsH in photosynthesis and respiration.
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Affiliation(s)
- Lanbo Yi
- Institute for Food and Bioresource Engineering, College of Engineering, Peking University, Beijing, China
- Shenzhen Key Laboratory of Marine Microbiome Engineering, Institute for Advanced Study, Shenzhen University, Shenzhen, China
- Institute for Innovative Development of Food Industry, Shenzhen University, Shenzhen, China
| | - Bin Liu
- Shenzhen Key Laboratory of Marine Microbiome Engineering, Institute for Advanced Study, Shenzhen University, Shenzhen, China
- Institute for Innovative Development of Food Industry, Shenzhen University, Shenzhen, China
| | - Peter J. Nixon
- Sir Ernst Chain Building-Wolfson Laboratories, Department of Life Sciences, Imperial College London, London, United Kingdom
- *Correspondence: Peter J. Nixon, ; orcid.org/0000-0003-1952-6937
| | - Jianfeng Yu
- Shenzhen Key Laboratory of Marine Microbiome Engineering, Institute for Advanced Study, Shenzhen University, Shenzhen, China
- Sir Ernst Chain Building-Wolfson Laboratories, Department of Life Sciences, Imperial College London, London, United Kingdom
- Jianfeng Yu, ; orcid.org/0000-0001-7174-3803
| | - Feng Chen
- Shenzhen Key Laboratory of Marine Microbiome Engineering, Institute for Advanced Study, Shenzhen University, Shenzhen, China
- Institute for Innovative Development of Food Industry, Shenzhen University, Shenzhen, China
- Feng Chen, ; orcid.org/0000-0002-9054-943X
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8
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Li C, Shang JX, Qiu C, Zhang B, Wang J, Wang S, Sun Y. Plastid-Localized EMB2726 Is Involved in Chloroplast Biogenesis and Early Embryo Development in Arabidopsis. FRONTIERS IN PLANT SCIENCE 2021; 12:675838. [PMID: 34367201 PMCID: PMC8343077 DOI: 10.3389/fpls.2021.675838] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/04/2021] [Accepted: 06/14/2021] [Indexed: 06/13/2023]
Abstract
Embryogenesis is a critical developmental process that establishes the body organization of higher plants. During this process, the biogenesis of chloroplasts from proplastids is essential. A failure in chloroplast development during embryogenesis can cause morphologically abnormal embryos or embryonic lethality. In this study, we isolated a T-DNA insertion mutant of the Arabidopsis gene EMBRYO DEFECTIVE 2726 (EMB2726). Heterozygous emb2726 seedlings produced about 25% albino seeds with embryos that displayed defects at the 32-cell stage and that arrested development at the late globular stage. EMB2726 protein was localized in chloroplasts and was expressed at all stages of development, such as embryogenesis. Moreover, the two translation elongation factor Ts domains within the protein were critical for its function. Transmission electron microscopy revealed that the cells in emb2726 embryos contained undifferentiated proplastids and that the expression of plastid genome-encoded photosynthesis-related genes was dramatically reduced. Expression studies of DR5:GFP, pDRN:DRN-GFP, and pPIN1:PIN1-GFP reporter lines indicated normal auxin biosynthesis but altered polar auxin transport. The expression of pSHR:SHR-GFP and pSCR:SCR-GFP confirmed that procambium and ground tissue precursors were lacking in emb2726 embryos. The results suggest that EMB2726 plays a critical role during Arabidopsis embryogenesis by affecting chloroplast development, possibly by affecting the translation process in plastids.
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Affiliation(s)
| | | | | | | | | | | | - Yu Sun
- Hebei Key Laboratory of Molecular and Cellular Biology, Ministry of Education Key Laboratory of Molecular and Cellular Biology, Hebei Collaboration Innovation Center for Cell Signaling, College of Life Sciences, Hebei Normal University, Shijiazhuang, China
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9
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Mishra LS, Funk C. The FtsHi Enzymes of Arabidopsis thaliana: Pseudo-Proteases with an Important Function. Int J Mol Sci 2021; 22:5917. [PMID: 34072887 PMCID: PMC8197885 DOI: 10.3390/ijms22115917] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2021] [Revised: 05/28/2021] [Accepted: 05/29/2021] [Indexed: 01/01/2023] Open
Abstract
FtsH metalloproteases found in eubacteria, animals, and plants are well-known for their vital role in the maintenance and proteolysis of membrane proteins. Their location is restricted to organelles of endosymbiotic origin, the chloroplasts, and mitochondria. In the model organism Arabidopsis thaliana, there are 17 membrane-bound FtsH proteases containing an AAA+ (ATPase associated with various cellular activities) and a Zn2+ metalloprotease domain. However, in five of those, the zinc-binding motif HEXXH is either mutated (FtsHi1, 2, 4, 5) or completely missing (FtsHi3), rendering these enzymes presumably inactive in proteolysis. Still, homozygous null mutants of the pseudo-proteases FtsHi1, 2, 4, 5 are embryo-lethal. Homozygous ftshi3 or a weak point mutant in FTSHi1 are affected in overall plant growth and development. This review will focus on the findings concerning the FtsHi pseudo-proteases and their involvement in protein import, leading to consequences in embryogenesis, seed growth, chloroplast, and leaf development and oxidative stress management.
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Affiliation(s)
| | - Christiane Funk
- Department of Chemistry, Umeå University, SE-901 87 Umeå, Sweden;
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10
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Mielke K, Wagner R, Mishra LS, Demir F, Perrar A, Huesgen PF, Funk C. Abundance of metalloprotease FtsH12 modulates chloroplast development in Arabidopsis thaliana. JOURNAL OF EXPERIMENTAL BOTANY 2021; 72:3455-3473. [PMID: 33216923 PMCID: PMC8042743 DOI: 10.1093/jxb/eraa550] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/11/2020] [Accepted: 11/19/2020] [Indexed: 05/11/2023]
Abstract
The ATP-dependent metalloprotease FtsH12 (filamentation temperature sensitive protein H 12) has been suggested to participate in a heteromeric motor complex, driving protein translocation into the chloroplast. FtsH12 was immuno-detected in proplastids, seedlings, leaves, and roots. Expression of Myc-tagged FtsH12 under its native promotor allowed identification of FtsHi1, 2, 4, and 5, and plastidic NAD-malate dehydrogenase, five of the six interaction partners in the suggested import motor complex. Arabidopsis thaliana mutant seedlings with reduced FTSH12 abundance exhibited pale cotyledons and small, deformed chloroplasts with altered thylakoid structure. Mature plants retained these chloroplast defects, resulting in slightly variegated leaves and lower chlorophyll content. Label-free proteomics revealed strong changes in the proteome composition of FTSH12 knock-down seedlings, reflecting impaired plastid development. The composition of the translocon on the inner chloroplast membrane (TIC) protein import complex was altered, with coordinated reduction of the FtsH12-FtsHi complex subunits and accumulation of the 1 MDa TIC complex subunits TIC56, TIC214 and TIC22-III. FTSH12 overexpressor lines showed no obvious phenotype, but still displayed distinct differences in their proteome. N-terminome analyses further demonstrated normal proteolytic maturation of plastid-imported proteins irrespective of FTSH12 abundance. Together, our data suggest that FtsH12 has highest impact during seedling development; its abundance alters the plastid import machinery and impairs chloroplast development.
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Affiliation(s)
- Kati Mielke
- Department of Chemistry, Umeå University, Umeå, Sweden
| | - Raik Wagner
- Department of Chemistry, Umeå University, Umeå, Sweden
| | | | - Fatih Demir
- Central Institute for Engineering, Electronics and Analytics, Jülich, Germany
| | - Andreas Perrar
- Central Institute for Engineering, Electronics and Analytics, Jülich, Germany
| | - Pitter F Huesgen
- Central Institute for Engineering, Electronics and Analytics, Jülich, Germany
- CECAD, Medical Faculty and University Hospital, University of Cologne, Cologne, Germany
- Institute of Biochemistry, University of Cologne, Cologne, Germany
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11
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Li JY, Sun JL, Tian YY, Liu JX. The FtsH-Inactive Protein FtsHi5 Is Required for Chloroplast Development and Protein Accumulation in Chloroplasts at Low Ambient Temperature in Arabidopsis. FRONTIERS IN PLANT SCIENCE 2021; 12:830390. [PMID: 35185971 PMCID: PMC8850778 DOI: 10.3389/fpls.2021.830390] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2021] [Accepted: 12/29/2021] [Indexed: 05/03/2023]
Abstract
Chloroplasts are indispensable for higher plants. The growth and development of plants are very sensitive to environmental temperature changes, and chloroplast development is also regulated by adverse environmental temperatures. However, the molecular mechanism of how plants coordinate chloroplast development and environmental temperature changes remains largely unknown. Here, a temperature-conditioned chloroplast development defective mutant thermo-sensitive mutant in leaf color 2 (tsl2) of Arabidopsis was obtained through a forward genetic screening. The tsl2 mutant showed a weak yellowish phenotype at normal growth temperature (22°C), and the phenotype was more pronounced at low growth temperature (16°C) and largely rescued at high growth temperature (29°C). Bulk Segregant Analysis (BSA) revealed that TSL2 encodes FtsH-Inactive Protein 5 (FtsHi5). Genetic complementation analysis confirmed that complemented expression of FtsHi5 rescued the chlorophyll content and thylakoid development defects observed in tsl2 mutants at 16°C. Quantitative mass spectrometry analysis with Tandem Mass Tag (TMT) isobaric labeling revealed broad changes in the chloroplast proteome of tsl2 mutant plants at low temperature, which is agreed with the impaired chloroplast biogenesis and function in tsl2 plants. Together, our data demonstrates that FtsHi5/TSL2 plays an important role in chloroplast development and protein accumulation in chloroplasts, especially at low environmental temperatures in Arabidopsis.
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Affiliation(s)
- Jin-Yu Li
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, China
| | - Jing-Liang Sun
- College of Environment and Resources, Dalian Nationalities University, Dalian, China
| | - Ying-Ying Tian
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, China
| | - Jian-Xiang Liu
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, China
- *Correspondence: Jian-Xiang Liu,
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12
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Correction: FtsHi4 Is Essential for Embryogenesis Due to Its Influence on Chloroplast Development in Arabidopsis. PLoS One 2020; 15:e0229232. [PMID: 32049998 PMCID: PMC7015396 DOI: 10.1371/journal.pone.0229232] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
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13
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Bouchnak I, Brugière S, Moyet L, Le Gall S, Salvi D, Kuntz M, Tardif M, Rolland N. Unraveling Hidden Components of the Chloroplast Envelope Proteome: Opportunities and Limits of Better MS Sensitivity. Mol Cell Proteomics 2019; 18:1285-1306. [PMID: 30962257 PMCID: PMC6601204 DOI: 10.1074/mcp.ra118.000988] [Citation(s) in RCA: 41] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2018] [Revised: 04/03/2019] [Indexed: 12/31/2022] Open
Abstract
The chloroplast is a major plant cell organelle that fulfills essential metabolic and biosynthetic functions. Located at the interface between the chloroplast and other cell compartments, the chloroplast envelope system is a strategic barrier controlling the exchange of ions, metabolites and proteins, thus regulating essential metabolic functions (synthesis of hormones precursors, amino acids, pigments, sugars, vitamins, lipids, nucleotides etc.) of the plant cell. However, unraveling the contents of the chloroplast envelope proteome remains a difficult challenge; many proteins constituting this functional double membrane system remain to be identified. Indeed, the envelope contains only 1% of the chloroplast proteins (i.e. 0.4% of the whole cell proteome). In other words, most envelope proteins are so rare at the cell, chloroplast, or even envelope level, that they remained undetectable using targeted MS studies. Cross-contamination of chloroplast subcompartments by each other and by other cell compartments during cell fractionation, impedes accurate localization of many envelope proteins. The aim of the present study was to take advantage of technologically improved MS sensitivity to better define the proteome of the chloroplast envelope (differentiate genuine envelope proteins from contaminants). This MS-based analysis relied on an enrichment factor that was calculated for each protein identified in purified envelope fractions as compared with the value obtained for the same protein in crude cell extracts. Using this approach, a total of 1269 proteins were detected in purified envelope fractions, of which, 462 could be assigned an envelope localization by combining MS-based spectral count analyses with manual annotation using data from the literature and prediction tools. Many of such proteins being previously unknown envelope components, these data constitute a new resource of significant value to the broader plant science community aiming to define principles and molecular mechanisms controlling fundamental aspects of plastid biogenesis and functions.
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Affiliation(s)
- Imen Bouchnak
- From the ‡University Grenoble Alpes, INRA, CNRS, CEA, IRIG-LPCV, 38000 Grenoble, France
| | - Sabine Brugière
- §University Grenoble Alpes, CEA, Inserm, IRIG-BGE, 38000 Grenoble, France
| | - Lucas Moyet
- From the ‡University Grenoble Alpes, INRA, CNRS, CEA, IRIG-LPCV, 38000 Grenoble, France
| | - Sophie Le Gall
- From the ‡University Grenoble Alpes, INRA, CNRS, CEA, IRIG-LPCV, 38000 Grenoble, France
| | - Daniel Salvi
- From the ‡University Grenoble Alpes, INRA, CNRS, CEA, IRIG-LPCV, 38000 Grenoble, France
| | - Marcel Kuntz
- From the ‡University Grenoble Alpes, INRA, CNRS, CEA, IRIG-LPCV, 38000 Grenoble, France
| | - Marianne Tardif
- §University Grenoble Alpes, CEA, Inserm, IRIG-BGE, 38000 Grenoble, France
| | - Norbert Rolland
- From the ‡University Grenoble Alpes, INRA, CNRS, CEA, IRIG-LPCV, 38000 Grenoble, France;.
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14
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Mishra LS, Mielke K, Wagner R, Funk C. Reduced expression of the proteolytically inactive FtsH members has impacts on the Darwinian fitness of Arabidopsis thaliana. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:2173-2184. [PMID: 30721974 PMCID: PMC6460958 DOI: 10.1093/jxb/erz004] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/02/2018] [Accepted: 01/04/2019] [Indexed: 05/20/2023]
Abstract
FtsH (filamentation-temperature-sensitive protein H) proteases are a family of membrane-bound enzymes present in eubacteria, animals, and plants. Besides the 12 genes encoding proteolytically active members of the FtsH family in the genome of Arabidopsis, there are five genes coding for members that are assumed to be proteolytically inactive due to mutations in the protease domain; these are termed FtsHi (i for inactive). Despite their lack of proteolytic activity, these FtsHi members seem to be important for chloroplast and plant development as four out of five homozygous knockout-mutants of FtsHis are embryo-lethal. Here, we analysed the Darwinian fitness of weak homozygous (ftshi1,3,4) and heterozygous (ftshi/FTSHi2,4,5) mutants. We compared the growth and development of these mutants to their respective wild-type Arabidopsis plants under controlled laboratory conditions and in the field, and we also evaluated the photosynthetic efficiency by pulse-amplitude modulation fluorescence. Homologous genotypes were subjected to various stress conditions in a greenhouse and gene co-expression as well as phylogenetic analyses were performed. Analysis of the gene-expression network of the five FTSHi genes indicated common clusters with genes encoding FtsH12, OTP51, and methylase. Phylogenetic analyses pointed to a common evolution (and common disappearance in grasses and gymnosperms) of FtsH12 and multiple presumably proteolytically inactive FtsHi enzymes. Our data show that the FtsHi enzymes are highly important during the seedling stage and for Darwinian fitness analyses in semi-natural conditions.
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Affiliation(s)
| | - Kati Mielke
- Department of Chemistry, Umeå University, Umeå, Sweden
| | - Raik Wagner
- Department of Chemistry, Umeå University, Umeå, Sweden
| | - Christiane Funk
- Department of Chemistry, Umeå University, Umeå, Sweden
- Correspondence:
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15
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Adam Z, Aviv-Sharon E, Keren-Paz A, Naveh L, Rozenberg M, Savidor A, Chen J. The Chloroplast Envelope Protease FTSH11 - Interaction With CPN60 and Identification of Potential Substrates. FRONTIERS IN PLANT SCIENCE 2019; 10:428. [PMID: 31024594 PMCID: PMC6459962 DOI: 10.3389/fpls.2019.00428] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2019] [Accepted: 03/21/2019] [Indexed: 05/03/2023]
Abstract
FTSH proteases are membrane-bound, ATP-dependent metalloproteases found in bacteria, mitochondria and chloroplasts. The product of one of the 12 genes encoding FTSH proteases in Arabidopsis, FTSH11, has been previously shown to be essential for acquired thermotolerance. However, the substrates of this protease, as well as the mechanism linking it to thermotolerance are largely unknown. To get insight into these, the FTSH11 knockout mutant was complemented with proteolytically active or inactive variants of this protease, tagged with HA-tag, under the control of the native promoter. Using these plants in thermotolerance assay demonstrated that the proteolytic activity, and not only the ATPase one, is essential for conferring thermotolerance. Immunoblot analyses of leaf extracts, isolated organelles and sub-fractionated chloroplast membranes localized FTSH11 mostly to chloroplast envelopes. Affinity purification followed by mass spectrometry analysis revealed interaction between FTSH11 and different components of the CPN60 chaperonin. In affinity enrichment assays, CPN60s as well as a number of envelope, stroma and thylakoid proteins were found associated with proteolytically inactive FTSH11. Comparative proteomic analysis of WT and knockout plants, grown at 20°C or exposed to 30°C for 6 h, revealed a plethora of upregulated chloroplast proteins in the knockout, some of them might be candidate substrates. Among these stood out TIC40, which was stabilized in the knockout line after recovery from heat stress, and three proteins that were found trapped in the affinity enrichment assay: the nucleotide antiporter PAPST2, the fatty acid binding protein FAP1 and the chaperone HSP70. The consistent behavior of these four proteins in different assays suggest that they are potential FTSH11 substrates.
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Affiliation(s)
- Zach Adam
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel
- *Correspondence: Zach Adam,
| | - Elinor Aviv-Sharon
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel
| | - Alona Keren-Paz
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel
| | - Leah Naveh
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel
| | - Mor Rozenberg
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel
| | - Alon Savidor
- de Botton Institute for Protein Profiling, The Nancy and Stephen Grand Israel National Center for Personalized Medicine, Weizmann Institute of Science, Rehovot, Israel
| | - Junping Chen
- Plant Stress and Germplasm Development Unit, USDA-ARS, Lubbock, TX, United States
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16
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Wang T, Li S, Chen D, Xi Y, Xu X, Ye N, Zhang J, Peng X, Zhu G. Impairment of FtsHi5 Function Affects Cellular Redox Balance and Photorespiratory Metabolism in Arabidopsis. PLANT & CELL PHYSIOLOGY 2018; 59:2526-2535. [PMID: 30137570 DOI: 10.1093/pcp/pcy174] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2018] [Accepted: 08/18/2018] [Indexed: 05/20/2023]
Abstract
Photorespiration is an essential process for plant photosynthesis, development and growth in aerobic conditions. Recent studies have shown that photorespiration is an open system integrated with the plant primary metabolism network and intracellular redox systems, though the mechanisms of regulating photorespiration are far from clear. Through a forward genetic method, we identified a photorespiratory mutant pr1 (photorespiratory related 1), which produced a chlorotic and smaller photorespiratory growth phenotype with decreased chlorophyll content and accumulation of glycine and serine in ambient air. Morphological and physiological defects in pr1 plants can be largely abolished under elevated CO2 conditions. Genetic mapping and complementation confirmed that PR1 encodes an FtsH (Filamentation temperature-sensitive H)-like protein, FtsHi5. Reduced FtsHi5 expression in DEX-induced RNAi transgenic plants produced a similar growth phenotype with pr1 (ftsHi5-1). Transcriptome analysis suggested a changed expression pattern of redox-related genes and an increased expression of senescence-related genes in DEX: RNAi-FtsHi5 seedlings. Together with the observation that decreased accumulation of D1 and D2 proteins of photosystem II (PSII) and over-accumulation of reactive oxygen species (ROS) in ftsHi5 mutants, we hypothesize that FtsHi5 functions in maintaining the cellular redox balance and thus regulates photorespiratory metabolism.
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Affiliation(s)
- Ting Wang
- College of Life Sciences, South China Agricultural University, Guangzhou, China
| | - Sihui Li
- College of Life Sciences, South China Agricultural University, Guangzhou, China
| | - Dan Chen
- College of Life Sciences, South China Agricultural University, Guangzhou, China
| | - Yue Xi
- College of Life Sciences, South China Agricultural University, Guangzhou, China
| | - Xuezhong Xu
- College of Life Sciences, South China Agricultural University, Guangzhou, China
| | - Nenghui Ye
- Southern Regional Collaborative Innovation Center for Grain and Oil Crops in China, Hunan Agricultural University, Changsha, China
| | - Jianhua Zhang
- Faculty of Science, Hong Kong Baptist University, Kowloon Tong, Hong Kong
| | - Xinxiang Peng
- College of Life Sciences, South China Agricultural University, Guangzhou, China
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, South China Agricultural University, Guangzhou, China
| | - Guohui Zhu
- College of Life Sciences, South China Agricultural University, Guangzhou, China
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, South China Agricultural University, Guangzhou, China
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17
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Kikuchi S, Asakura Y, Imai M, Nakahira Y, Kotani Y, Hashiguchi Y, Nakai Y, Takafuji K, Bédard J, Hirabayashi-Ishioka Y, Mori H, Shiina T, Nakai M. A Ycf2-FtsHi Heteromeric AAA-ATPase Complex Is Required for Chloroplast Protein Import. THE PLANT CELL 2018; 30:2677-2703. [PMID: 30309901 PMCID: PMC6305978 DOI: 10.1105/tpc.18.00357] [Citation(s) in RCA: 100] [Impact Index Per Article: 16.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2018] [Revised: 08/16/2018] [Accepted: 10/01/2018] [Indexed: 05/20/2023]
Abstract
Chloroplasts import thousands of nucleus-encoded preproteins synthesized in the cytosol through the TOC and TIC translocons on the outer and inner envelope membranes, respectively. Preprotein translocation across the inner membrane requires ATP; however, the import motor has remained unclear. Here, we report that a 2-MD heteromeric AAA-ATPase complex associates with the TIC complex and functions as the import motor, directly interacting with various translocating preproteins. This 2-MD complex consists of a protein encoded by the previously enigmatic chloroplast gene ycf2 and five related nuclear-encoded FtsH-like proteins, namely, FtsHi1, FtsHi2, FtsHi4, FtsHi5, and FtsH12. These components are each essential for plant viability and retain the AAA-type ATPase domain, but only FtsH12 contains the zinc binding active site generally conserved among FtsH-type metalloproteases. Furthermore, even the FtsH12 zinc binding site is dispensable for its essential function. Phylogenetic analyses suggest that all AAA-type members of the Ycf2/FtsHi complex including Ycf2 evolved from the chloroplast-encoded membrane-bound AAA-protease FtsH of the ancestral endosymbiont. The Ycf2/FtsHi complex also contains an NAD-malate dehydrogenase, a proposed key enzyme for ATP production in chloroplasts in darkness or in nonphotosynthetic plastids. These findings advance our understanding of this ATP-driven protein translocation system that is unique to the green lineage of photosynthetic eukaryotes.
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Affiliation(s)
- Shingo Kikuchi
- Institute for Protein Research, Osaka University, Osaka 565-0871, Japan
| | - Yukari Asakura
- Institute for Protein Research, Osaka University, Osaka 565-0871, Japan
| | - Midori Imai
- Institute for Protein Research, Osaka University, Osaka 565-0871, Japan
| | - Yoichi Nakahira
- College of Agriculture, Ibaraki University, Ami-cho, Inashiki, Ibaraki 300-0393, Japan
| | - Yoshiko Kotani
- Institute for Protein Research, Osaka University, Osaka 565-0871, Japan
| | - Yasuyuki Hashiguchi
- Department of Biology, Osaka Medical College, Takatsuki, Osaka 569-8686, Japan
| | - Yumi Nakai
- Department of Biochemistry, Osaka Medical College, Takatsuki, Osaka 569-8686, Japan
| | - Kazuaki Takafuji
- CoMIT Omics Center, Graduate School of Medicine, Osaka University, Osaka 565-0871, Japan
| | - Jocelyn Bédard
- Institute for Protein Research, Osaka University, Osaka 565-0871, Japan
| | | | - Hitoshi Mori
- Graduate School of Bioagricultural Sciences, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8601, Japan
| | - Takashi Shiina
- School of Human Environment Science, Kyoto Prefectural University, Sakyo-ku, Kyoto 606-8522, Japan
| | - Masato Nakai
- Institute for Protein Research, Osaka University, Osaka 565-0871, Japan
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18
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Schreier TB, Cléry A, Schläfli M, Galbier F, Stadler M, Demarsy E, Albertini D, Maier BA, Kessler F, Hörtensteiner S, Zeeman SC, Kötting O. Plastidial NAD-Dependent Malate Dehydrogenase: A Moonlighting Protein Involved in Early Chloroplast Development through Its Interaction with an FtsH12-FtsHi Protease Complex. THE PLANT CELL 2018; 30:1745-1769. [PMID: 29934433 PMCID: PMC6139691 DOI: 10.1105/tpc.18.00121] [Citation(s) in RCA: 51] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2018] [Revised: 05/21/2018] [Accepted: 06/19/2018] [Indexed: 05/18/2023]
Abstract
Malate dehydrogenases (MDHs) convert malate to oxaloacetate using NAD(H) or NADP(H) as a cofactor. Arabidopsis thaliana mutants lacking plastidial NAD-dependent MDH (pdnad-mdh) are embryo-lethal, and constitutive silencing (miR-mdh-1) causes a pale, dwarfed phenotype. The reason for these severe phenotypes is unknown. Here, we rescued the embryo lethality of pdnad-mdh via embryo-specific expression of pdNAD-MDH. Rescued seedlings developed white leaves with aberrant chloroplasts and failed to reproduce. Inducible silencing of pdNAD-MDH at the rosette stage also resulted in white newly emerging leaves. These data suggest that pdNAD-MDH is important for early plastid development, which is consistent with the reductions in major plastidial galactolipid, carotenoid, and protochlorophyllide levels in miR-mdh-1 seedlings. Surprisingly, the targeting of other NAD-dependent MDH isoforms to the plastid did not complement the embryo lethality of pdnad-mdh, while expression of enzymatically inactive pdNAD-MDH did. These complemented plants grew indistinguishably from the wild type. Both active and inactive forms of pdNAD-MDH interact with a heteromeric AAA-ATPase complex at the inner membrane of the chloroplast envelope. Silencing the expression of FtsH12, a key member of this complex, resulted in a phenotype that strongly resembles miR-mdh-1. We propose that pdNAD-MDH is essential for chloroplast development due to its moonlighting role in stabilizing FtsH12, distinct from its enzymatic function.
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Affiliation(s)
- Tina B Schreier
- Institute of Molecular Plant Biology, ETH Zurich, CH-8092 Zurich, Switzerland
| | - Antoine Cléry
- Institute of Molecular Biology and Biophysics, Department of Biology, ETH Zurich, CH-8093 Zurich, Switzerland
| | - Michael Schläfli
- Institute of Molecular Plant Biology, ETH Zurich, CH-8092 Zurich, Switzerland
| | - Florian Galbier
- Institute of Molecular Plant Biology, ETH Zurich, CH-8092 Zurich, Switzerland
| | - Martha Stadler
- Institute of Molecular Plant Biology, ETH Zurich, CH-8092 Zurich, Switzerland
| | - Emilie Demarsy
- Laboratory of Plant Physiology, University of Neuchâtel, CH-2000 Neuchâtel, Switzerland
- Department of Botany and Plant Biology, University of Geneva, CH-1211 Geneva, Switzerland
| | - Daniele Albertini
- Institute of Molecular Plant Biology, ETH Zurich, CH-8092 Zurich, Switzerland
| | - Benjamin A Maier
- Institute of Molecular Plant Biology, ETH Zurich, CH-8092 Zurich, Switzerland
| | - Felix Kessler
- Laboratory of Plant Physiology, University of Neuchâtel, CH-2000 Neuchâtel, Switzerland
| | | | - Samuel C Zeeman
- Institute of Molecular Plant Biology, ETH Zurich, CH-8092 Zurich, Switzerland
| | - Oliver Kötting
- Institute of Molecular Plant Biology, ETH Zurich, CH-8092 Zurich, Switzerland
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19
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Chen H, Li S, Li L, Hu H, Zhao J. Arabidopsis EMB1990 Encoding a Plastid-Targeted YlmG Protein Is Required for Chloroplast Biogenesis and Embryo Development. FRONTIERS IN PLANT SCIENCE 2018; 9:181. [PMID: 29503657 PMCID: PMC5820536 DOI: 10.3389/fpls.2018.00181] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2017] [Accepted: 01/31/2018] [Indexed: 05/24/2023]
Abstract
In higher plants, embryo development originated from fertilized egg cell is the first step of the life cycle. The chloroplast participates in many essential metabolic pathways, and its function is highly associated with embryo development. However, the mechanisms and relevant genetic components by which the chloroplast functions in embryogenesis are largely uncharacterized. In this paper, we describe the Arabidopsis EMB1990 gene, encoding a plastid-targeted YlmG protein which is required for chloroplast biogenesis and embryo development. Loss of the EMB1990/YLMG1-1 resulted in albino seeds containing abortive embryos, and the morphological development of homozygous emb1990 embryos was disrupted after the globular stage. Our results showed that EMB1990/YLMG1-1 was expressed in the primordia and adaxial region of cotyledon during embryogenesis, and the encoded protein was targeted to the chloroplast. TEM observation of cellular ultrastructure showed that chloroplast biogenesis was impaired in emb1990 embryo cells. Expression of certain plastid genes was also affected in the loss-of-function mutants, including genes encoding core protein complex subunits located in the thylakoid membrane. Moreover, the tissue-specific genes of embryo development were misexpressed in emb1990 mutant, including genes known to delineate cell fate decisions in the SAM (shoot apical meristem), cotyledon and hypophysis. Taken together, we propose that the nuclear-encoded YLMG1-1 is targeted to the chloroplast and required for normal plastid gene expression. Hence, YLMG1-1 plays a critical role in Arabidopsis embryogenesis through participating in chloroplast biogenesis.
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Majsec K, Bhuiyan NH, Sun Q, Kumari S, Kumar V, Ware D, van Wijk KJ. The Plastid and Mitochondrial Peptidase Network in Arabidopsis thaliana: A Foundation for Testing Genetic Interactions and Functions in Organellar Proteostasis. THE PLANT CELL 2017; 29:2687-2710. [PMID: 28947489 PMCID: PMC5728138 DOI: 10.1105/tpc.17.00481] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/20/2017] [Revised: 08/29/2017] [Accepted: 09/21/2017] [Indexed: 05/17/2023]
Abstract
Plant plastids and mitochondria have dynamic proteomes. Protein homeostasis in these organelles is maintained by a proteostasis network containing protein chaperones, peptidases, and their substrate recognition factors. However, many peptidases, as well as their functional connections and substrates, are poorly characterized. This review provides a systematic insight into the organellar peptidase network in Arabidopsis thaliana We present a compendium of known and putative Arabidopsis peptidases and inhibitors, and compare the distribution of plastid and mitochondrial peptidases to the total peptidase complement. This comparison shows striking biases, such as the (near) absence of cysteine and aspartic peptidases and peptidase inhibitors, whereas other peptidase families were exclusively organellar; reasons for such biases are discussed. A genome-wide mRNA-based coexpression data set was generated based on quality controlled and normalized public data, and used to infer additional plastid peptidases and to generate a coexpression network for 97 organellar peptidase baits (1742 genes, making 2544 edges). The graphical network includes 10 modules with specialized/enriched functions, such as mitochondrial protein maturation, thermotolerance, senescence, or enriched subcellular locations such as the thylakoid lumen or chloroplast envelope. The peptidase compendium, including the autophagy and proteosomal systems, and the annotation based on the MEROPS nomenclature of peptidase clans and families, is incorporated into the Plant Proteome Database.
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Affiliation(s)
- Kristina Majsec
- Faculty of Science, University of Zagreb, 10000 Zagreb, Croatia
| | - Nazmul H Bhuiyan
- School for Integrative Plant Sciences, Section Plant Biology, Cornell University, Ithaca, New York 14853
| | - Qi Sun
- Computational Biology Service Unit, Cornell University, Ithaca, New York 14853
| | - Sunita Kumari
- Cold Spring Harbor laboratory, Cold Spring Harbor, New York 17724
| | - Vivek Kumar
- Cold Spring Harbor laboratory, Cold Spring Harbor, New York 17724
| | - Doreen Ware
- Cold Spring Harbor laboratory, Cold Spring Harbor, New York 17724
| | - Klaas J van Wijk
- School for Integrative Plant Sciences, Section Plant Biology, Cornell University, Ithaca, New York 14853
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Ye LS, Zhang Q, Pan H, Huang C, Yang ZN, Yu QB. EMB2738, which encodes a putative plastid-targeted GTP-binding protein, is essential for embryogenesis and chloroplast development in higher plants. PHYSIOLOGIA PLANTARUM 2017; 161:414-430. [PMID: 28675462 DOI: 10.1111/ppl.12603] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2017] [Revised: 06/22/2017] [Accepted: 06/26/2017] [Indexed: 06/07/2023]
Abstract
In higher plants, chloroplasts carry out many important functions, and normal chloroplast development is required for embryogenesis. Numerous chloroplast-targeted proteins involved in embryogenesis have been identified. Nevertheless, their functions remain unclear. In this study, a chloroplast-localized protein, EMB2738, was reported to be involved in Arabidopsis embryogenesis. EMB2738 knockout led to defective embryos, and the embryo development in emb2738 was interrupted after the globular stage. Complementation experiments identified the AT3G12080 locus as EMB2738. Cellular observation indicated that severely impaired chloroplast development was observed in these aborted embryos. Quantitative reverse transcription-polymerase chain reaction (qRT-PCR) analysis showed that chloroplast-encoded photosynthetic genes, which are transcribed by plastid-encoded RNA polymerase (PEP), are predominantly decreased in defective embryogenesis, compared with those in the wild-type. In contrast, genes encoding PEP core subunits, which are transcribed by nucleus-encoded RNA polymerase (NEP), were increased. These results suggested that the knockout of EMB2738 strongly blocked chloroplast-encoded photosynthesis gene expression in embryos. Silencing of the EMB2738 orthologue in tobacco through a virus-induced genome silencing technique resulted in an albinism phenotype, vacuolated chloroplasts and decreased PEP-dependent plastid transcription. These results suggested that NtEMB2738 might be involved in plastid gene expression. Nevertheless, genetic analysis showed that the NtEMB2738 coding sequence could not fully rescue the defective embryogenesis of the emb2738 mutant, which suggested functional divergence between NtEMB2738 and EMB2738 in embryogenesis. Taken together, these results indicated that both EMB2738 and NtEMB2738 are involved in the expression of plastid genes in higher plants, and there is a functional divergence between NtEMB2738 and EMB2738 in embryogenesis.
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Affiliation(s)
- Lin-Shan Ye
- College of Life and Environmental Sciences, Shanghai Normal University, Shanghai 200234, China
- College of Tourism, Shanghai Normal University, Shanghai 200234, China
| | - Qin Zhang
- College of Life and Environmental Sciences, Shanghai Normal University, Shanghai 200234, China
| | - Hui Pan
- College of Life and Environmental Sciences, Shanghai Normal University, Shanghai 200234, China
| | - Chao Huang
- College of Life and Environmental Sciences, Shanghai Normal University, Shanghai 200234, China
| | - Zhong-Nan Yang
- College of Life and Environmental Sciences, Shanghai Normal University, Shanghai 200234, China
- College of Tourism, Shanghai Normal University, Shanghai 200234, China
| | - Qing-Bo Yu
- College of Life and Environmental Sciences, Shanghai Normal University, Shanghai 200234, China
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Liu H, Wang X, Ren K, Li K, Wei M, Wang W, Sheng X. Light Deprivation-Induced Inhibition of Chloroplast Biogenesis Does Not Arrest Embryo Morphogenesis But Strongly Reduces the Accumulation of Storage Reserves during Embryo Maturation in Arabidopsis. FRONTIERS IN PLANT SCIENCE 2017; 8:1287. [PMID: 28775734 PMCID: PMC5517488 DOI: 10.3389/fpls.2017.01287] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2017] [Accepted: 07/07/2017] [Indexed: 05/18/2023]
Abstract
The chloroplast is one of the most important organelles found exclusively in plant and algal cells. Previous reports indicated that the chloroplast is involved in plant embryogenesis, but the role of the organelle during embryo morphogenesis and maturation is still a controversial question demanding further research. In the present study, siliques of Arabidopsis at the early globular stage were enwrapped using tinfoil, and light deprivation-induced inhibition of the chloroplast biogenesis were validated by stereomicroscope, laser scanning confocal microscope and transmission electron microscope. Besides, the effects of inhibited chloroplast differentiation on embryogenesis, especially on the reserve deposition were analyzed using periodic acid-Schiff reaction, Nile red labeling, and Coomassie brilliant blue staining. Our results indicated that tinfoil enwrapping strongly inhibited the formation of chloroplasts, which did not arrest embryo morphogenesis, but markedly influenced embryo maturation, mainly through reducing the accumulation of storage reserves, especially starch grains and oil. Our data provide a new insight into the roles of the chloroplast during embryogenesis.
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Affiliation(s)
- Huichao Liu
- College of Life Sciences, Capital Normal UniversityBeijing, China
| | - Xiaoxia Wang
- College of Life Sciences, Capital Normal UniversityBeijing, China
| | - Kaixuan Ren
- College of Life Sciences, Capital Normal UniversityBeijing, China
| | - Kai Li
- Department of Chemistry, Capital Normal UniversityBeijing, China
| | - Mengmeng Wei
- College of Life Sciences, Capital Normal UniversityBeijing, China
| | - Wenjie Wang
- College of Life Sciences, Capital Normal UniversityBeijing, China
| | - Xianyong Sheng
- College of Life Sciences, Capital Normal UniversityBeijing, China
- *Correspondence: Xianyong Sheng,
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Wang C, Zhao R, Li B, Gu LY, Gou H. An in vivo and in vitro study: High-dosage Danshen injection induces peripheral vascular endothelial cells injury. Hum Exp Toxicol 2015; 35:404-17. [PMID: 26078283 DOI: 10.1177/0960327115591374] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Danshen injection, a pharmaceutical dosage form of Danshen, has been widely used in the treatment of coronary heart diseases, myocardial infarction, and hypertension. With more and more adverse drug reactions linked with Danshen injection, its safety comes under suspicion. To evaluate its safety, mice were divided into four groups: vehicle, low-, middle-, and high-Danshen group, and each group was intravenously administered with Danshen injection at a dose of 0, 0.64, 1.55, and 5.76 g/kg/day for 5 days, respectively (the low dosage was the recommended clinical dosage, the middle dosage was the most commonly used higher dosage, and the high dosage was the highest dosage used in clinic). Peripheral vascular toxicity wasn't observed in the low-dosage group, elevated serum endothelin-1 (ET-1) was observed in the middle-dosage group; and more peripheral vascular toxicities like increased vascular leakage, elevated serum nitrate and ET-1, and vascular endothelial cells apoptosis were detected in the high-dosage group. In vitro study, low-concentration Danshen injection showed protective effect to human umbilical vein endothelial cells (HUVECs), while high concentration displayed strong cytotoxic effects, including increase in nitric oxide and ET-1 production, inhibition of cell viability, and apoptosis induction. Further, the HUVECs' apoptosis induced by high-concentration Danshen injection was found along with the induction of reactive oxygen species. In conclusion, these results suggest that Danshen injection is nontoxic in its recommended clinical dosage, and the 2.4-fold as the recommended clinical dosage might be the highest safety dosage in clinic treatment. In addition, Danshen injection is a potential vascular toxic drug in its high dosage and shouldn't be used far beyond its recommended dosage in clinic treatment.
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Affiliation(s)
- C Wang
- Department of Cell Biology, Key Laboratory of Ministry of Education for TCM Viscera-State Theory and Applications, Ministry of Education of China (Province-Ministry Co-construct), Liaoning University of Traditional Chinese Medicine, China
| | - R Zhao
- Department of Cell Biology, Key Laboratory of Ministry of Education for TCM Viscera-State Theory and Applications, Ministry of Education of China (Province-Ministry Co-construct), Liaoning University of Traditional Chinese Medicine, China
| | - B Li
- Department of Developmental Biology, Key Laboratory of Cell Biology, Ministry of Public Health and Key Laboratory of Medical Cell Biology, Ministry of Education, China Medical University, China
| | - L Y Gu
- Department of Cell Biology, Key Laboratory of Ministry of Education for TCM Viscera-State Theory and Applications, Ministry of Education of China (Province-Ministry Co-construct), Liaoning University of Traditional Chinese Medicine, China
| | - H Gou
- Department of Cell Biology, Key Laboratory of Ministry of Education for TCM Viscera-State Theory and Applications, Ministry of Education of China (Province-Ministry Co-construct), Liaoning University of Traditional Chinese Medicine, China
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