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For: Boyle NR, Sengupta N, Morgan JA. Metabolic flux analysis of heterotrophic growth in Chlamydomonas reinhardtii. PLoS One 2017;12:e0177292. [PMID: 28542252 DOI: 10.1371/journal.pone.0177292] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2016] [Accepted: 04/25/2017] [Indexed: 12/18/2022]  Open
Number Cited by Other Article(s)
1
Kaste JA, Shachar-Hill Y. Model validation and selection in metabolic flux analysis and flux balance analysis. Biotechnol Prog 2024;40:e3413. [PMID: 37997613 PMCID: PMC10922127 DOI: 10.1002/btpr.3413] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2023] [Revised: 11/03/2023] [Accepted: 11/10/2023] [Indexed: 11/25/2023]
2
Moulin S. The way out: TPT3 allows triose-P export from the chloroplast. THE PLANT CELL 2023:koad106. [PMID: 37052933 DOI: 10.1093/plcell/koad106] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2023] [Revised: 04/04/2023] [Accepted: 04/06/2023] [Indexed: 06/19/2023]
3
Huang W, Krishnan A, Plett A, Meagher M, Linka N, Wang Y, Ren B, Findinier J, Redekop P, Fakhimi N, Kim RG, Karns DA, Boyle N, Posewitz MC, Grossman AR. Chlamydomonas mutants lacking chloroplast TRIOSE PHOSPHATE TRANSPORTER3 are metabolically compromised and light-sensitive. THE PLANT CELL 2023:koad095. [PMID: 36970811 DOI: 10.1093/plcell/koad095] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2023] [Revised: 03/08/2023] [Accepted: 03/23/2023] [Indexed: 06/18/2023]
4
Kaste JAM, Shachar-Hill Y. Model Validation and Selection in Metabolic Flux Analysis and Flux Balance Analysis. ARXIV 2023:arXiv:2303.12651v1. [PMID: 36994165 PMCID: PMC10055486] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Subscribe] [Scholar Register] [Indexed: 03/31/2023]
5
Joun J, Sirohi R, Sim SJ. The effects of acetate and glucose on carbon fixation and carbon utilization in mixotrophy of Haematococcus pluvialis. BIORESOURCE TECHNOLOGY 2023;367:128218. [PMID: 36332870 DOI: 10.1016/j.biortech.2022.128218] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2022] [Revised: 10/22/2022] [Accepted: 10/25/2022] [Indexed: 06/16/2023]
6
Systems biology's role in leveraging microalgal biomass potential: Current status and future perspectives. ALGAL RES 2022. [DOI: 10.1016/j.algal.2022.102963] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
7
Lacroux J, Atteia A, Brugière S, Couté Y, Vallon O, Steyer JP, van Lis R. Proteomics unveil a central role for peroxisomes in butyrate assimilation of the heterotrophic Chlorophyte alga Polytomella sp. Front Microbiol 2022;13:1029828. [PMID: 36353459 PMCID: PMC9637915 DOI: 10.3389/fmicb.2022.1029828] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2022] [Accepted: 10/05/2022] [Indexed: 09/08/2023]  Open
8
Kato N, McCuiston C, Szuska KA, Lauersen KJ, Nelson G, Strain A. Chlamydomonas reinhardtii Alternates Peroxisomal Contents in Response to Trophic Conditions. Cells 2022;11:cells11172724. [PMID: 36078132 PMCID: PMC9454557 DOI: 10.3390/cells11172724] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2022] [Revised: 08/23/2022] [Accepted: 08/29/2022] [Indexed: 11/16/2022]  Open
9
Dvoretsky DS, Temnov MS, Markin IV, Ustinskaya YV, Es’kova MA. Problems in the Development of Efficient Biotechnology for the Synthesis of Valuable Components from Microalgae Biomass. THEORETICAL FOUNDATIONS OF CHEMICAL ENGINEERING 2022. [DOI: 10.1134/s0040579522040224] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
10
Briones-Baez MF, Aguilera-Vazquez L, Rangel-Valdez N, Martinez-Salazar AL, Zuñiga C. Multi-Objective Optimization of Microalgae Metabolism: An Evolutive Algorithm Based on FBA. Metabolites 2022;12:metabo12070603. [PMID: 35888727 PMCID: PMC9325016 DOI: 10.3390/metabo12070603] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2022] [Revised: 06/17/2022] [Accepted: 06/22/2022] [Indexed: 12/07/2022]  Open
11
Srivastava A, Kalwani M, Chakdar H, Pabbi S, Shukla P. Biosynthesis and biotechnological interventions for commercial production of microalgal pigments: A review. BIORESOURCE TECHNOLOGY 2022;352:127071. [PMID: 35351568 DOI: 10.1016/j.biortech.2022.127071] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/21/2022] [Revised: 03/20/2022] [Accepted: 03/23/2022] [Indexed: 06/14/2023]
12
Saint-Sorny M, Brzezowski P, Arrivault S, Alric J, Johnson X. Interactions Between Carbon Metabolism and Photosynthetic Electron Transport in a Chlamydomonas reinhardtii Mutant Without CO2 Fixation by RuBisCO. FRONTIERS IN PLANT SCIENCE 2022;13:876439. [PMID: 35574084 PMCID: PMC9096841 DOI: 10.3389/fpls.2022.876439] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/15/2022] [Accepted: 03/31/2022] [Indexed: 06/15/2023]
13
Huang G, Zhao D, Lan C, Wu B, Li X, Lou S, Zheng Y, Huang Y, Hu Z, Jia B. Glucose-assisted trophic conversion of Chlamydomonas reinhardtii by expression of glucose transporter GLUT1. ALGAL RES 2022. [DOI: 10.1016/j.algal.2021.102626] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
14
Füßl M, König AC, Eirich J, Hartl M, Kleinknecht L, Bohne AV, Harzen A, Kramer K, Leister D, Nickelsen J, Finkemeier I. Dynamic light- and acetate-dependent regulation of the proteome and lysine acetylome of Chlamydomonas. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2022;109:261-277. [PMID: 34709689 DOI: 10.1111/tpj.15555] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2021] [Revised: 10/19/2021] [Accepted: 10/22/2021] [Indexed: 06/13/2023]
15
Jiang Z, Sun Y, Guan H, Sun D, Fang S, Ma X, Wang Z, Li Z, Zhang C, Ge Y. Contributions of polysaccharides to arsenate resistance in Chlamydomonas reinhardtii. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2022;229:113091. [PMID: 34922168 DOI: 10.1016/j.ecoenv.2021.113091] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2021] [Revised: 12/10/2021] [Accepted: 12/13/2021] [Indexed: 06/14/2023]
16
Subcellular Localizations of Catalase and Exogenously Added Fatty Acid in Chlamydomonas reinhardtii. Cells 2021;10:cells10081940. [PMID: 34440712 PMCID: PMC8391285 DOI: 10.3390/cells10081940] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2021] [Revised: 07/22/2021] [Accepted: 07/26/2021] [Indexed: 02/01/2023]  Open
17
Correa SM, Fernie AR, Nikoloski Z, Brotman Y. Towards model-driven characterization and manipulation of plant lipid metabolism. Prog Lipid Res 2020;80:101051. [PMID: 32640289 DOI: 10.1016/j.plipres.2020.101051] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2020] [Revised: 06/20/2020] [Accepted: 06/21/2020] [Indexed: 01/09/2023]
18
Lee BS, Koo KM, Ryu J, Hong MJ, Kim SH, Kwon SJ, Kim JB, Choi JI, Ahn JW. Overexpression of fructose-1,6-bisphosphate aldolase 1 enhances accumulation of fatty acids in Chlamydomonas reinhardtii. ALGAL RES 2020. [DOI: 10.1016/j.algal.2020.101825] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
19
Roell MS, Zurbriggen MD. The impact of synthetic biology for future agriculture and nutrition. Curr Opin Biotechnol 2020;61:102-109. [DOI: 10.1016/j.copbio.2019.10.004] [Citation(s) in RCA: 47] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2019] [Revised: 09/30/2019] [Accepted: 10/14/2019] [Indexed: 12/25/2022]
20
Allen DK, Young JD. Tracing metabolic flux through time and space with isotope labeling experiments. Curr Opin Biotechnol 2019;64:92-100. [PMID: 31864070 PMCID: PMC7302994 DOI: 10.1016/j.copbio.2019.11.003] [Citation(s) in RCA: 38] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2019] [Revised: 11/02/2019] [Accepted: 11/04/2019] [Indexed: 12/11/2022]
21
Wang L, Zhang H, Zhang Y, Song Y. 13C metabolic flux analysis on roles of malate transporter in lipid accumulation of Mucor circinelloides. Microb Cell Fact 2019;18:154. [PMID: 31506101 PMCID: PMC6737672 DOI: 10.1186/s12934-019-1207-9] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2019] [Accepted: 09/04/2019] [Indexed: 12/04/2022]  Open
22
Herrmann HA, Dyson BC, Vass L, Johnson GN, Schwartz JM. Flux sampling is a powerful tool to study metabolism under changing environmental conditions. NPJ Syst Biol Appl 2019;5:32. [PMID: 31482008 PMCID: PMC6718391 DOI: 10.1038/s41540-019-0109-0] [Citation(s) in RCA: 46] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2019] [Accepted: 08/06/2019] [Indexed: 12/26/2022]  Open
23
Herrmann HA, Schwartz JM, Johnson GN. Metabolic acclimation-a key to enhancing photosynthesis in changing environments? JOURNAL OF EXPERIMENTAL BOTANY 2019;70:3043-3056. [PMID: 30997505 DOI: 10.1093/jxb/erz157] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/17/2018] [Accepted: 03/21/2019] [Indexed: 05/18/2023]
24
Abernathy MH, Czajka JJ, Allen DK, Hill NC, Cameron JC, Tang YJ. Cyanobacterial carboxysome mutant analysis reveals the influence of enzyme compartmentalization on cellular metabolism and metabolic network rigidity. Metab Eng 2019;54:222-231. [PMID: 31029860 DOI: 10.1016/j.ymben.2019.04.010] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2019] [Revised: 04/13/2019] [Accepted: 04/22/2019] [Indexed: 12/18/2022]
25
Paik SM, Kim J, Jin E, Jeon NL. Overproduction of recombinant E. coli malate synthase enhances Chlamydomonas reinhardtii biomass by upregulating heterotrophic metabolism. BIORESOURCE TECHNOLOGY 2019;272:594-598. [PMID: 30348480 DOI: 10.1016/j.biortech.2018.10.029] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2018] [Revised: 10/10/2018] [Accepted: 10/11/2018] [Indexed: 06/08/2023]
26
Sake CL, Metcalf AJ, Boyle NR. The challenge and potential of photosynthesis: unique considerations for metabolic flux measurements in photosynthetic microorganisms. Biotechnol Lett 2018;41:35-45. [PMID: 30430405 PMCID: PMC6313361 DOI: 10.1007/s10529-018-2622-4] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2018] [Accepted: 11/07/2018] [Indexed: 11/29/2022]
27
Brinkrolf C, Henke NA, Ochel L, Pucker B, Kruse O, Lutter P. Modeling and Simulating the Aerobic Carbon Metabolism of a Green Microalga Using Petri Nets and New Concepts of VANESA. J Integr Bioinform 2018;15:/j/jib.2018.15.issue-3/jib-2018-0018/jib-2018-0018.xml. [PMID: 30218605 PMCID: PMC6340121 DOI: 10.1515/jib-2018-0018] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2018] [Accepted: 08/16/2018] [Indexed: 12/21/2022]  Open
28
Tibocha-Bonilla JD, Zuñiga C, Godoy-Silva RD, Zengler K. Advances in metabolic modeling of oleaginous microalgae. BIOTECHNOLOGY FOR BIOFUELS 2018;11:241. [PMID: 30202436 PMCID: PMC6124020 DOI: 10.1186/s13068-018-1244-3] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/05/2018] [Accepted: 08/27/2018] [Indexed: 06/08/2023]
29
Lancet D, Zidovetzki R, Markovitch O. Systems protobiology: origin of life in lipid catalytic networks. J R Soc Interface 2018;15:20180159. [PMID: 30045888 PMCID: PMC6073634 DOI: 10.1098/rsif.2018.0159] [Citation(s) in RCA: 82] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2018] [Accepted: 06/29/2018] [Indexed: 12/17/2022]  Open
30
Cell-Type Specific Metabolic Flux Analysis: A Challenge for Metabolic Phenotyping and a Potential Solution in Plants. Metabolites 2017;7:metabo7040059. [PMID: 29137184 PMCID: PMC5746739 DOI: 10.3390/metabo7040059] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2017] [Revised: 11/09/2017] [Accepted: 11/10/2017] [Indexed: 12/22/2022]  Open
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