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Ajith A, Milnes PJ, Johnson GN, Lockyer NP. Mass Spectrometry Imaging for Spatial Chemical Profiling of Vegetative Parts of Plants. Plants 2022; 11:plants11091234. [PMID: 35567235 PMCID: PMC9102225 DOI: 10.3390/plants11091234] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/30/2022] [Revised: 04/28/2022] [Accepted: 04/28/2022] [Indexed: 11/23/2022]
Abstract
The detection of chemical species and understanding their respective localisations in tissues have important implications in plant science. The conventional methods for imaging spatial localisation of chemical species are often restricted by the number of species that can be identified and is mostly done in a targeted manner. Mass spectrometry imaging combines the ability of traditional mass spectrometry to detect numerous chemical species in a sample with their spatial localisation information by analysing the specimen in a 2D manner. This article details the popular mass spectrometry imaging methodologies which are widely pursued along with their respective sample preparation and the data analysis methods that are commonly used. We also review the advancements through the years in the usage of the technique for the spatial profiling of endogenous metabolites, detection of xenobiotic agrochemicals and disease detection in plants. As an actively pursued area of research, we also address the hurdles in the analysis of plant tissues, the future scopes and an integrated approach to analyse samples combining different mass spectrometry imaging methods to obtain the most information from a sample of interest.
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Affiliation(s)
- Akhila Ajith
- Department of Chemistry, Photon Science Institute, University of Manchester, Manchester M13 9PL, UK;
| | - Phillip J. Milnes
- Syngenta, Jeolott’s Hill International Research Centre, Bracknell RG42 6EY, UK;
| | - Giles N. Johnson
- Department of Earth and Environmental Sciences, University of Manchester, Manchester M13 9PY, UK;
| | - Nicholas P. Lockyer
- Department of Chemistry, Photon Science Institute, University of Manchester, Manchester M13 9PL, UK;
- Correspondence:
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Saunders HA, Calzadilla PI, Schwartz JM, Johnson GN. Cytosolic fumarase acts as a metabolic fail-safe for both high and low temperature acclimation of Arabidopsis thaliana. J Exp Bot 2022; 73:2112-2124. [PMID: 34951633 DOI: 10.1093/jxb/erab560] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/28/2021] [Accepted: 12/22/2021] [Indexed: 06/14/2023]
Abstract
Plants acclimate their photosynthetic capacity (Pmax) in response to changing environmental conditions. In Arabidopsis thaliana, photosynthetic acclimation to cold requires the accumulation of the organic acid fumarate, catalysed by a cytosolically localized fumarase, FUM2. However, the role of this accumulation is currently unknown. Here, we use an integrated experimental and modelling approach to examine the role of FUM2 and fumarate across the physiological temperature range. We have studied three genotypes: Col-0; a fum2 mutant in a Col-0 background; and C24, an accession with reduced FUM2 expression. While low temperature causes an increase in Pmax in the Col-0 plants, this parameter decreases following exposure of plants to 30 °C for 7 d. Plants in which fumarate accumulation is partially (C24) or completely (fum2) abolished show a reduced acclimation of Pmax across the physiological temperature range (i.e. Pmax changes less in response to changing temperature). To understand the role of fumarate accumulation, we have adapted a reliability engineering technique, Failure Mode and Effect Analysis (FMEA), to formalize a rigorous approach for ranking metabolites according to the potential risk that they pose to the metabolic system. FMEA identifies fumarate as a low-risk metabolite, while its precursor, malate, is shown to be high risk and liable to cause system instability. We propose that the role of FUM2 is to provide a fail-safe in order to control malate concentration, maintaining system stability in a changing environment. We suggest that FMEA is a technique that is not only useful in understanding plant metabolism but can also be used to study reliability in other systems and synthetic pathways.
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Affiliation(s)
- Helena A Saunders
- Department of Earth and Environmental Sciences, Faculty of Science and Engineering, University of Manchester, Manchester M13 9PT, UK
- School of Biological Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester M13 9PT, UK
| | - Pablo I Calzadilla
- Department of Earth and Environmental Sciences, Faculty of Science and Engineering, University of Manchester, Manchester M13 9PT, UK
| | - Jean-Marc Schwartz
- School of Biological Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester M13 9PT, UK
| | - Giles N Johnson
- Department of Earth and Environmental Sciences, Faculty of Science and Engineering, University of Manchester, Manchester M13 9PT, UK
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Gjindali A, Herrmann HA, Schwartz JM, Johnson GN, Calzadilla PI. A Holistic Approach to Study Photosynthetic Acclimation Responses of Plants to Fluctuating Light. Front Plant Sci 2021; 12:668512. [PMID: 33936157 PMCID: PMC8079764 DOI: 10.3389/fpls.2021.668512] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/16/2021] [Accepted: 03/23/2021] [Indexed: 05/10/2023]
Abstract
Plants in natural environments receive light through sunflecks, the duration and distribution of these being highly variable across the day. Consequently, plants need to adjust their photosynthetic processes to avoid photoinhibition and maximize yield. Changes in the composition of the photosynthetic apparatus in response to sustained changes in the environment are referred to as photosynthetic acclimation, a process that involves changes in protein content and composition. Considering this definition, acclimation differs from regulation, which involves processes that alter the activity of individual proteins over short-time periods, without changing the abundance of those proteins. The interconnection and overlapping of the short- and long-term photosynthetic responses, which can occur simultaneously or/and sequentially over time, make the study of long-term acclimation to fluctuating light in plants challenging. In this review we identify short-term responses of plants to fluctuating light that could act as sensors and signals for acclimation responses, with the aim of understanding how plants integrate environmental fluctuations over time and tailor their responses accordingly. Mathematical modeling has the potential to integrate physiological processes over different timescales and to help disentangle short-term regulatory responses from long-term acclimation responses. We review existing mathematical modeling techniques for studying photosynthetic responses to fluctuating light and propose new methods for addressing the topic from a holistic point of view.
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Affiliation(s)
- Armida Gjindali
- Department of Earth and Environmental Sciences, Faculty of Science and Engineering, University of Manchester, Manchester, United Kingdom
| | - Helena A. Herrmann
- Department of Earth and Environmental Sciences, Faculty of Science and Engineering, University of Manchester, Manchester, United Kingdom
- Division of Evolution & Genomic Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester, United Kingdom
| | - Jean-Marc Schwartz
- Division of Evolution & Genomic Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester, United Kingdom
| | - Giles N. Johnson
- Department of Earth and Environmental Sciences, Faculty of Science and Engineering, University of Manchester, Manchester, United Kingdom
| | - Pablo I. Calzadilla
- Department of Earth and Environmental Sciences, Faculty of Science and Engineering, University of Manchester, Manchester, United Kingdom
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Karim MF, Johnson GN. Acclimation of Photosynthesis to Changes in the Environment Results in Decreases of Oxidative Stress in Arabidopsis thaliana. Front Plant Sci 2021; 12:683986. [PMID: 34630448 PMCID: PMC8495028 DOI: 10.3389/fpls.2021.683986] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2021] [Accepted: 08/18/2021] [Indexed: 05/08/2023]
Abstract
The dynamic acclimation of photosynthesis plays an important role in increasing the fitness of a plant under variable light environments. Since acclimation is partially mediated by a glucose-6-phosphate/phosphate translocator 2 (GPT2), this study examined whether plants lacking GPT2, which consequently have defective acclimation to increases in light, are more susceptible to oxidative stress. To understand this mechanism, we used the model plant Arabidopsis thaliana [accession Wassilewskija-4 (Ws-4)] and compared it with mutants lacking GPT2. The plants were then grown at low light (LL) at 100 μmol m-2 s-1 for 7 weeks. For the acclimation experiments, a set of plants from LL was transferred to 400 μmol m-2 s-1 conditions for 7 days. Biochemical and physiological analyses showed that the gpt2 mutant plants had significantly greater activity for ascorbate peroxidase (APX), guiacol peroxidase (GPOX), and superoxide dismutase (SOD). Furthermore, the mutant plants had significantly lower maximum quantum yields of photosynthesis (Fv/Fm). A microarray analysis also showed that gpt2 plants exhibited a greater induction of stress-related genes relative to wild-type (WT) plants. We then concluded that photosynthetic acclimation to a higher intensity of light protects plants against oxidative stress.
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Herrmann HA, Dyson BC, Miller MAE, Schwartz JM, Johnson GN. Metabolic flux from the chloroplast provides signals controlling photosynthetic acclimation to cold in Arabidopsis thaliana. Plant Cell Environ 2021; 44:171-185. [PMID: 32981099 DOI: 10.1111/pce.13896] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/2020] [Revised: 09/08/2020] [Accepted: 09/09/2020] [Indexed: 06/11/2023]
Abstract
Photosynthesis is especially sensitive to environmental conditions, and the composition of the photosynthetic apparatus can be modulated in response to environmental change, a process termed photosynthetic acclimation. Previously, we identified a role for a cytosolic fumarase, FUM2 in acclimation to low temperature in Arabidopsis thaliana. Mutant lines lacking FUM2 were unable to acclimate their photosynthetic apparatus to cold. Here, using gas exchange measurements and metabolite assays of acclimating and non-acclimating plants, we show that acclimation to low temperature results in a change in the distribution of photosynthetically fixed carbon to different storage pools during the day. Proteomic analysis of wild-type Col-0 Arabidopsis and of a fum2 mutant, which was unable to acclimate to cold, indicates that extensive changes occurring in response to cold are affected in the mutant. Metabolic and proteomic data were used to parameterize metabolic models. Using an approach called flux sampling, we show how the relative export of triose phosphate and 3-phosphoglycerate provides a signal of the chloroplast redox state that could underlie photosynthetic acclimation to cold.
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Affiliation(s)
- Helena A Herrmann
- School of Natural Sciences, University of Manchester, Michael Smith Building, Manchester, UK
- Institue of Analytical Chemistry, University of Vienna, Vienna, Austria
| | - Beth C Dyson
- School of Natural Sciences, University of Manchester, Michael Smith Building, Manchester, UK
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield, UK
| | - Matthew A E Miller
- School of Natural Sciences, University of Manchester, Michael Smith Building, Manchester, UK
| | - Jean-Marc Schwartz
- School of Natural Sciences, University of Manchester, Michael Smith Building, Manchester, UK
| | - Giles N Johnson
- School of Natural Sciences, University of Manchester, Michael Smith Building, Manchester, UK
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Herrmann HA, Schwartz JM, Johnson GN. From empirical to theoretical models of light response curves - linking photosynthetic and metabolic acclimation. Photosynth Res 2020; 145:5-14. [PMID: 31654195 PMCID: PMC7308256 DOI: 10.1007/s11120-019-00681-2] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/03/2019] [Accepted: 10/04/2019] [Indexed: 05/08/2023]
Abstract
Light response curves (LRCs) describe how the rate of photosynthesis varies as a function of light. They provide information on the maximum photosynthetic capacity, quantum yield, light compensation point and leaf radiation use efficiency of leaves. Light response curves are widely used to capture photosynthetic phenotypes in response to changing environmental conditions. However, models describing these are predominantly empirical and do not attempt to explain behaviour at a mechanistic level. Here, we use modelling to understand the metabolic changes required for photosynthetic acclimation to changing environmental conditions. Using a simple kinetic model, we predicted LRCs across the physiological temperature range of Arabidopsis thaliana and confirm these using experimental data. We use our validated metabolic model to make novel predictions about the metabolic changes of temperature acclimation. We demonstrate that NADPH utilization are enhanced in warm-acclimated plants, whereas both NADPH and CO2 utilization is enhanced in cold-acclimated plants. We demonstrate how different metabolic acclimation strategies may lead to the same photosynthetic response across environmental change. We further identify that certain metabolic acclimation strategies, such as NADPH utilization, are only triggered when plants are moved beyond a threshold high or low temperature.
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Affiliation(s)
- Helena A. Herrmann
- Department of Earth and Environmental Sciences, Faculty of Science and Engineering, University of Manchester, Manchester, M13 9PT UK
- Division of Evolution & Genomic Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester, M13 9PT UK
| | - Jean-Marc Schwartz
- Division of Evolution & Genomic Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester, M13 9PT UK
| | - Giles N. Johnson
- Department of Earth and Environmental Sciences, Faculty of Science and Engineering, University of Manchester, Manchester, M13 9PT UK
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Ahmad N, Khan MO, Islam E, Wei ZY, McAusland L, Lawson T, Johnson GN, Nixon PJ. Contrasting Responses to Stress Displayed by Tobacco Overexpressing an Algal Plastid Terminal Oxidase in the Chloroplast. Front Plant Sci 2020; 11:501. [PMID: 32411169 PMCID: PMC7199157 DOI: 10.3389/fpls.2020.00501] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2019] [Accepted: 04/03/2020] [Indexed: 05/10/2023]
Abstract
The plastid terminal oxidase (PTOX) - an interfacial diiron carboxylate protein found in the thylakoid membranes of chloroplasts - oxidizes plastoquinol and reduces molecular oxygen to water. It is believed to play a physiologically important role in the response of some plant species to light and salt (NaCl) stress by diverting excess electrons to oxygen thereby protecting photosystem II (PSII) from photodamage. PTOX is therefore a candidate for engineering stress tolerance in crop plants. Previously, we used chloroplast transformation technology to over express PTOX1 from the green alga Chlamydomonas reinhardtii in tobacco (generating line Nt-PTOX-OE). Contrary to expectation, growth of Nt-PTOX-OE plants was more sensitive to light stress. Here we have examined in detail the effects of PTOX1 on photosynthesis in Nt-PTOX-OE tobacco plants grown at two different light intensities. Under 'low light' (50 μmol photons m-2 s-1) conditions, Nt-PTOX-OE and WT plants showed similar photosynthetic activities. In contrast, under 'high light' (125 μmol photons m-2 s-1) conditions, Nt-PTOX-OE showed less PSII activity than WT while photosystem I (PSI) activity was unaffected. Nt-PTOX-OE grown under high light also failed to increase the chlorophyll a/b ratio and the maximum rate of CO2 assimilation compared to low-light grown plants, suggesting a defect in acclimation. In contrast, Nt-PTOX-OE plants showed much better germination, root length, and shoot biomass accumulation than WT when exposed to high levels of NaCl and showed better recovery and less chlorophyll bleaching after NaCl stress when grown hydroponically. Overall, our results strengthen the link between PTOX and the resistance of plants to salt stress.
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Affiliation(s)
- Niaz Ahmad
- Agricultural Biotechnology Division, National Institute for Biotechnology and Genetic Engineering, Faisalabad, Pakistan
- Department of Life Sciences, Sir Ernst Chain Building–Wolfson Laboratories, Imperial College London, London, United Kingdom
- *Correspondence: Niaz Ahmad, ;
| | - Muhammad Omar Khan
- Agricultural Biotechnology Division, National Institute for Biotechnology and Genetic Engineering, Faisalabad, Pakistan
| | - Ejazul Islam
- Soil and Environmental Biotechnology Division, National Institute for Biotechnology and Genetic Engineering, Faisalabad, Pakistan
| | - Zheng-Yi Wei
- Department of Life Sciences, Sir Ernst Chain Building–Wolfson Laboratories, Imperial College London, London, United Kingdom
- Institute of Agricultural Biotechnology, Jilin Academy of Agricultural Science, Changchun, China
| | - Lorna McAusland
- School of Life Sciences, University of Essex, Essex, United Kingdom
| | - Tracy Lawson
- School of Life Sciences, University of Essex, Essex, United Kingdom
| | - Giles N. Johnson
- School of Natural Sciences, The University of Manchester, Manchester, United Kingdom
| | - Peter J. Nixon
- Department of Life Sciences, Sir Ernst Chain Building–Wolfson Laboratories, Imperial College London, London, United Kingdom
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Herrmann HA, Dyson BC, Vass L, Johnson GN, Schwartz JM. Flux sampling is a powerful tool to study metabolism under changing environmental conditions. NPJ Syst Biol Appl 2019; 5:32. [PMID: 31482008 PMCID: PMC6718391 DOI: 10.1038/s41540-019-0109-0] [Citation(s) in RCA: 45] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2019] [Accepted: 08/06/2019] [Indexed: 12/26/2022] Open
Abstract
The development of high-throughput 'omic techniques has sparked a rising interest in genome-scale metabolic models, with applications ranging from disease diagnostics to crop adaptation. Efficient and accurate methods are required to analyze large metabolic networks. Flux sampling can be used to explore the feasible flux solutions in metabolic networks by generating probability distributions of steady-state reaction fluxes. Unlike other methods, flux sampling can be used without assuming a particular cellular objective. We have undertaken a rigorous comparison of several sampling algorithms and concluded that the coordinate hit-and-run with rounding (CHRR) algorithm is the most efficient based on both run-time and multiple convergence diagnostics. We demonstrate the power of CHRR by using it to study the metabolic changes that underlie photosynthetic acclimation to cold of Arabidopsis thaliana plant leaves. In combination with experimental measurements, we show how the regulated interplay between diurnal starch and organic acid accumulation defines the plant acclimation process. We confirm fumarate accumulation as a requirement for cold acclimation and further predict γ-aminobutyric acid to have a key role in metabolic signaling under cold conditions. These results demonstrate how flux sampling can be used to analyze the feasible flux solutions across changing environmental conditions, whereas eliminating the need to make assumptions which introduce observer bias.
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Affiliation(s)
- Helena A. Herrmann
- Department of Earth and Environmental Sciences, University of Manchester, Manchester, UK
| | - Beth C. Dyson
- Department of Earth and Environmental Sciences, University of Manchester, Manchester, UK
- Present Address: Department of Animal and Plant Sciences, University of Sheffield, Sheffield, UK
| | - Lucy Vass
- School of Biological Sciences, University of Manchester, Manchester, UK
- Present Address: Bristol Veterinary School and Department of Population Health Sciences, University of Bristol, Bristol, UK
| | - Giles N. Johnson
- Department of Earth and Environmental Sciences, University of Manchester, Manchester, UK
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Herrmann HA, Schwartz JM, Johnson GN. Metabolic acclimation-a key to enhancing photosynthesis in changing environments? J Exp Bot 2019; 70:3043-3056. [PMID: 30997505 DOI: 10.1093/jxb/erz157] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/17/2018] [Accepted: 03/21/2019] [Indexed: 05/18/2023]
Abstract
Plants adjust their photosynthetic capacity in response to their environment in a way that optimizes their yield and fitness. There is growing evidence that this acclimation is a response to changes in the leaf metabolome, but the extent to which these are linked and how this is optimized remain poorly understood. Using as an example the metabolic perturbations occurring in response to cold, we define the different stages required for acclimation, discuss the evidence for a metabolic temperature sensor, and suggest further work towards designing climate-smart crops. In particular, we discuss how constraint-based and kinetic metabolic modelling approaches can be used to generate targeted hypotheses about relevant pathways, and argue that a stronger integration of experimental and in silico studies will help us to understand the tightly regulated interplay of carbon partitioning and resource allocation required for photosynthetic acclimation to different environmental conditions.
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Affiliation(s)
- Helena A Herrmann
- School of Earth and Environmental Sciences, Faculty of Science and Engineering, University of Manchester, Manchester, UK
- Division of Evolution & Genomic Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester, UK
| | - Jean-Marc Schwartz
- Division of Evolution & Genomic Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester, UK
| | - Giles N Johnson
- School of Earth and Environmental Sciences, Faculty of Science and Engineering, University of Manchester, Manchester, UK
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Fry EL, Johnson GN, Hall AL, Pritchard WJ, Bullock JM, Bardgett RD. Drought neutralises plant-soil feedback of two mesic grassland forbs. Oecologia 2018; 186:1113-1125. [PMID: 29399737 PMCID: PMC5859691 DOI: 10.1007/s00442-018-4082-x] [Citation(s) in RCA: 43] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2016] [Accepted: 01/20/2018] [Indexed: 11/27/2022]
Abstract
Plant-soil feedbacks (PSFs) describe the effect of a plant species on soil properties, which affect the performance of future generations. Here we test the hypothesis that drought alters PSFs by reducing plant-microbe associations and nutrient uptake. We chose two grassland forb species, previously shown to respond differently to soil conditioning and drought, to test our hypothesis. We conditioned unsterilised grassland soil with one generation of each species, and left a third soil unconditioned. We grew a second generation consisting of each combination of plant species, soil, and drought in a full factorial design, and measured soil microbial community and nutrient availability. Scabiosa columbaria displayed negative PSF (smaller plants) under non-droughted conditions, but neutral under drought, suggesting that drought disrupts plant-soil interactions and can advantage the plant. Photosynthetic efficiency of S. columbaria was reduced under drought, but recovered on rewetting regardless of soil conditioning, indicating that PSFs do not impede resilience of this species. Sanguisorba minor showed positive PSFs (larger plants), probably due to an increase in soil N in conspecific soil, but neutral PSF under drought. PSF neutralisation appeared to occur through drought-induced change in the soil microbial community for this species. When S. minor was planted in conspecific soil, photosynthetic efficiency declined to almost zero, with no recovery following rewetting. We attributed this to increased demand for water through higher demand for nutrients with positive PSF. Here we show that drought neutralises PSFs of two grassland forbs, which could have implications for plant communities under climate change.
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Affiliation(s)
- Ellen L Fry
- School of Earth and Environmental Sciences, Michael Smith Building, The University of Manchester, Oxford Road, Manchester, M13 9PT, UK.
| | - Giles N Johnson
- School of Earth and Environmental Sciences, Michael Smith Building, The University of Manchester, Oxford Road, Manchester, M13 9PT, UK
| | - Amy L Hall
- School of Earth and Environmental Sciences, Michael Smith Building, The University of Manchester, Oxford Road, Manchester, M13 9PT, UK
| | - W James Pritchard
- School of Earth and Environmental Sciences, Michael Smith Building, The University of Manchester, Oxford Road, Manchester, M13 9PT, UK
| | - James M Bullock
- NERC Centre for Ecology and Hydrology, Maclean Building, Benson Lane, Crowmarsh Gifford, Wallingford, Oxfordshire, OX10 8BB, UK
| | - Richard D Bardgett
- School of Earth and Environmental Sciences, Michael Smith Building, The University of Manchester, Oxford Road, Manchester, M13 9PT, UK
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11
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Casella S, Huang F, Mason D, Zhao GY, Johnson GN, Mullineaux CW, Liu LN. Dissecting the Native Architecture and Dynamics of Cyanobacterial Photosynthetic Machinery. Mol Plant 2017; 10:1434-1448. [PMID: 29017828 PMCID: PMC5683893 DOI: 10.1016/j.molp.2017.09.019] [Citation(s) in RCA: 59] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/29/2017] [Revised: 09/25/2017] [Accepted: 09/29/2017] [Indexed: 05/18/2023]
Abstract
The structural dynamics and flexibility of cell membranes play fundamental roles in the functions of the cells, i.e., signaling, energy transduction, and physiological adaptation. The cyanobacterial thylakoid membrane represents a model membrane that can conduct both oxygenic photosynthesis and respiration simultaneously. In this study, we conducted direct visualization of the global organization and mobility of photosynthetic complexes in thylakoid membranes from a model cyanobacterium, Synechococcus elongatus PCC 7942, using high-resolution atomic force, confocal, and total internal reflection fluorescence microscopy. We visualized the native arrangement and dense packing of photosystem I (PSI), photosystem II (PSII), and cytochrome (Cyt) b6f within thylakoid membranes at the molecular level. Furthermore, we functionally tagged PSI, PSII, Cyt b6f, and ATP synthase individually with fluorescent proteins, and revealed the heterogeneous distribution of these four photosynthetic complexes and determined their dynamic features within the crowding membrane environment using live-cell fluorescence imaging. We characterized red light-induced clustering localization and adjustable diffusion of photosynthetic complexes in thylakoid membranes, representative of the reorganization of photosynthetic apparatus in response to environmental changes. Understanding the organization and dynamics of photosynthetic membranes is essential for rational design and construction of artificial photosynthetic systems to underpin bioenergy development. Knowledge of cyanobacterial thylakoid membranes could also be extended to other cell membranes, such as chloroplast and mitochondrial membranes.
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Affiliation(s)
- Selene Casella
- Institute of Integrative Biology, University of Liverpool, Crown Street, Liverpool L69 7ZB, UK
| | - Fang Huang
- Institute of Integrative Biology, University of Liverpool, Crown Street, Liverpool L69 7ZB, UK
| | - David Mason
- Institute of Integrative Biology, University of Liverpool, Crown Street, Liverpool L69 7ZB, UK; Centre for Cell Imaging, University of Liverpool, Crown Street, Liverpool L69 7ZB, UK
| | - Guo-Yan Zhao
- Institute of Integrative Biology, University of Liverpool, Crown Street, Liverpool L69 7ZB, UK; College of Life Science, Shandong Normal University, Jinan 250014, P. R. China
| | - Giles N Johnson
- School of Earth and Environmental Sciences, University of Manchester, Oxford Road, Manchester M13 9PT, UK
| | - Conrad W Mullineaux
- School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London E1 4NS, UK
| | - Lu-Ning Liu
- Institute of Integrative Biology, University of Liverpool, Crown Street, Liverpool L69 7ZB, UK.
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Miller MAE, O’Cualain R, Selley J, Knight D, Karim MF, Hubbard SJ, Johnson GN. Dynamic Acclimation to High Light in Arabidopsis thaliana Involves Widespread Reengineering of the Leaf Proteome. Front Plant Sci 2017; 8:1239. [PMID: 28775726 PMCID: PMC5517461 DOI: 10.3389/fpls.2017.01239] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2017] [Accepted: 06/30/2017] [Indexed: 05/18/2023]
Abstract
Leaves of Arabidopsis thaliana transferred from low to high light increase their capacity for photosynthesis, a process of dynamic acclimation. A mutant, gpt2, lacking a chloroplast glucose-6-phosphate/phosphate translocator, is deficient in its ability to acclimate to increased light. Here, we have used a label-free proteomics approach, to perform relative quantitation of 1993 proteins from Arabidopsis wild type and gpt2 leaves exposed to increased light. Data are available via ProteomeXchange with identifier PXD006598. Acclimation to light is shown to involve increases in electron transport and carbon metabolism but no change in the abundance of photosynthetic reaction centers. The gpt2 mutant shows a similar increase in total protein content to wild type but differences in the extent of change of certain proteins, including in the relative abundance of the cytochrome b6f complex and plastocyanin, the thylakoid ATPase and selected Benson-Calvin cycle enzymes. Changes in leaf metabolite content as plants acclimate can be explained by changes in the abundance of enzymes involved in metabolism, which were reduced in gpt2 in some cases. Plants of gpt2 invest more in stress-related proteins, suggesting that their reduced ability to acclimate photosynthetic capacity results in increased stress.
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Affiliation(s)
- Matthew A. E. Miller
- School of Earth and Environmental Sciences, University of ManchesterManchester, United Kingdom
| | - Ronan O’Cualain
- School of Biological Sciences, University of ManchesterManchester, United Kingdom
| | - Julian Selley
- School of Biological Sciences, University of ManchesterManchester, United Kingdom
| | - David Knight
- School of Biological Sciences, University of ManchesterManchester, United Kingdom
| | - Mohd F. Karim
- School of Earth and Environmental Sciences, University of ManchesterManchester, United Kingdom
| | - Simon J. Hubbard
- School of Biological Sciences, University of ManchesterManchester, United Kingdom
| | - Giles N. Johnson
- School of Earth and Environmental Sciences, University of ManchesterManchester, United Kingdom
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Dyson BC, Miller MAE, Feil R, Rattray N, Bowsher CG, Goodacre R, Lunn JE, Johnson GN. FUM2, a Cytosolic Fumarase, Is Essential for Acclimation to Low Temperature in Arabidopsis thaliana. Plant Physiol 2016; 172:118-27. [PMID: 27440755 PMCID: PMC5074615 DOI: 10.1104/pp.16.00852] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/27/2016] [Accepted: 07/18/2016] [Indexed: 05/20/2023]
Abstract
Although cold acclimation is a key process in plants from temperate climates, the mechanisms sensing low temperature remain obscure. Here, we show that the accumulation of the organic acid fumaric acid, mediated by the cytosolic fumarase FUM2, is essential for cold acclimation of metabolism in the cold-tolerant model species Arabidopsis (Arabidopsis thaliana). A nontargeted metabolomic approach, using gas chromatography-mass spectrometry, identifies fumarate as a key component of the cold response in this species. Plants of T-DNA insertion mutants, lacking FUM2, show marked differences in their response to cold, with contrasting responses both in terms of metabolite concentrations and gene expression. The fum2 plants accumulated higher concentrations of phosphorylated sugar intermediates and of starch and malate. Transcripts for proteins involved in photosynthesis were markedly down-regulated in fum2.2 but not in wild-type Columbia-0. Plants of fum2 show a complete loss of the ability to acclimate photosynthesis to low temperature. We conclude that fumarate accumulation plays an essential role in low temperature sensing in Arabidopsis, either indirectly modulating metabolic or redox signals or possibly being itself directly involved in cold sensing.
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Affiliation(s)
- Beth C Dyson
- Faculty of Life Sciences, University of Manchester, Manchester M13 9PT, United Kingdom (B.C.D., M.A.E.M., C.G.B., G.N.J.);Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam, Germany (R.F., J.E.L.); andSchool of Chemistry and Manchester Institute of Biotechnology, University of Manchester, Manchester M1 7DN, United Kingdom (N.R., R.G.)
| | - Matthew A E Miller
- Faculty of Life Sciences, University of Manchester, Manchester M13 9PT, United Kingdom (B.C.D., M.A.E.M., C.G.B., G.N.J.);Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam, Germany (R.F., J.E.L.); andSchool of Chemistry and Manchester Institute of Biotechnology, University of Manchester, Manchester M1 7DN, United Kingdom (N.R., R.G.)
| | - Regina Feil
- Faculty of Life Sciences, University of Manchester, Manchester M13 9PT, United Kingdom (B.C.D., M.A.E.M., C.G.B., G.N.J.);Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam, Germany (R.F., J.E.L.); andSchool of Chemistry and Manchester Institute of Biotechnology, University of Manchester, Manchester M1 7DN, United Kingdom (N.R., R.G.)
| | - Nicholas Rattray
- Faculty of Life Sciences, University of Manchester, Manchester M13 9PT, United Kingdom (B.C.D., M.A.E.M., C.G.B., G.N.J.);Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam, Germany (R.F., J.E.L.); andSchool of Chemistry and Manchester Institute of Biotechnology, University of Manchester, Manchester M1 7DN, United Kingdom (N.R., R.G.)
| | - Caroline G Bowsher
- Faculty of Life Sciences, University of Manchester, Manchester M13 9PT, United Kingdom (B.C.D., M.A.E.M., C.G.B., G.N.J.);Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam, Germany (R.F., J.E.L.); andSchool of Chemistry and Manchester Institute of Biotechnology, University of Manchester, Manchester M1 7DN, United Kingdom (N.R., R.G.)
| | - Royston Goodacre
- Faculty of Life Sciences, University of Manchester, Manchester M13 9PT, United Kingdom (B.C.D., M.A.E.M., C.G.B., G.N.J.);Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam, Germany (R.F., J.E.L.); andSchool of Chemistry and Manchester Institute of Biotechnology, University of Manchester, Manchester M1 7DN, United Kingdom (N.R., R.G.)
| | - John E Lunn
- Faculty of Life Sciences, University of Manchester, Manchester M13 9PT, United Kingdom (B.C.D., M.A.E.M., C.G.B., G.N.J.);Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam, Germany (R.F., J.E.L.); andSchool of Chemistry and Manchester Institute of Biotechnology, University of Manchester, Manchester M1 7DN, United Kingdom (N.R., R.G.)
| | - Giles N Johnson
- Faculty of Life Sciences, University of Manchester, Manchester M13 9PT, United Kingdom (B.C.D., M.A.E.M., C.G.B., G.N.J.);Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam, Germany (R.F., J.E.L.); andSchool of Chemistry and Manchester Institute of Biotechnology, University of Manchester, Manchester M1 7DN, United Kingdom (N.R., R.G.)
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14
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Abstract
Over the last 15 years, research into the process of cyclic electron flow in photosynthesis has seen a huge resurgence. Having been considered by some in the early 1990s as a physiologically unimportant artefact, it is now recognised as essential to normal plant growth. Here, we provide an overview of the major developments covered in this special issue of photosynthesis research.
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Affiliation(s)
- Giovanni Finazzi
- Laboratoire de Physiologie Cellulaire et Végétale, UMR 5168, Centre National de la Recherche Scientifique (CNRS), Commissariat à l'Energie Atomique et aux Energies Alternatives (CEA), Institut National Recherche Agronomique (INRA), Institut de Biosciences et Biotechnologie de Grenoble (BIG), Université Grenoble Alpes (UGA), Grenoble, 38100, France.
| | - Giles N Johnson
- School of Earth and Environmental Sciences, University of Manchester, Michael Smith Building, Oxford Road, Manchester, M13 9PT, UK.
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15
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Johnson GN, Stepien P. Plastid Terminal Oxidase as a Route to Improving Plant Stress Tolerance: Known Knowns and Known Unknowns. Plant Cell Physiol 2016; 57:1387-1396. [PMID: 26936791 DOI: 10.1093/pcp/pcw042] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/07/2016] [Accepted: 02/21/2016] [Indexed: 05/24/2023]
Abstract
A plastid-localized terminal oxidase, PTox, was first described due to its role in chloroplast development, with plants lacking PTox producing white sectors on their leaves. This phenotype is explained as being due to PTox playing a role in carotenoid biosynthesis, as a cofactor of phytoene desaturase. Co-occurrence of PTox with a chloroplast-localized NADPH dehydrogenase (NDH) has suggested the possibility of a functional respiratory pathway in plastids. Evidence has also been found that, in certain stress-tolerant plant species, PTox can act as an electron acceptor from PSII, making it a candidate for engineering stress-tolerant crops. However, attempts to induce such a pathway via overexpression of the PTox protein have failed to date. Here we review the current understanding of PTox function in higher plants and discuss possible barriers to inducing PTox activity to improve stress tolerance.
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Affiliation(s)
- Giles N Johnson
- Faculty of Life Sciences, University of Manchester, Michael Smith Building, Oxford Road, Manchester M13 9PT, UK
| | - Piotr Stepien
- Department of Plant Nutrition, Wroclaw University of Environmental and Life Sciences, ul. Grunwaldzka 53, 50-357 Wroclaw, Poland
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16
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Ogbaga CC, Stepien P, Dyson BC, Rattray NJW, Ellis DI, Goodacre R, Johnson GN. Biochemical Analyses of Sorghum Varieties Reveal Differential Responses to Drought. PLoS One 2016; 11:e0154423. [PMID: 27153323 PMCID: PMC4859509 DOI: 10.1371/journal.pone.0154423] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2015] [Accepted: 04/13/2016] [Indexed: 12/17/2022] Open
Abstract
We have examined the biochemical responses of two sorghum cultivars of differing drought tolerance, Samsorg 17 (more drought tolerant) and Samsorg 40 (less drought tolerant), to sustained drought. Plants were exposed to different degrees of drought and then maintained at that level for five days. Responses were examined in terms of metabolic changes and the expression of drought induced proteins-Heat Shock Proteins (HSPs) and dehydrins (DHNs). Generalised phenotypic changes were studied using Fourier transform infrared (FT-IR) Spectroscopy and non-targeted Gas Chromatography Mass Spectrometry (GC-MS) was employed to detect changes in metabolites, while changes in protein expression were examined using Western blot analysis. Different response profiles of metabolites, HSPs and DHNs were observed in the two cultivars. Metabolic changes involved variation in amino acids, polysaccharides and their derivatives. A total of 188 compounds, with 142 known metabolites and 46 unknown small molecules, were detected in the two sorghum varieties. Under water deficit conditions, Samsorg 17 accumulated sugars and sugar alcohols, while in Samsorg 40 amino acids increased in concentration. This study suggest that the two Sorghum varieties adopt distinct approaches in response to drought, with Samsorg 17 being better able to maintain leaf function under severe drought conditions.
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Affiliation(s)
- Chukwuma C. Ogbaga
- The University of Manchester, Faculty of Life Sciences, Oxford Road, Manchester, United Kingdom
| | - Piotr Stepien
- The University of Manchester, Faculty of Life Sciences, Oxford Road, Manchester, United Kingdom
- Wroclaw University of Environmental and Life Sciences, Department of Plant Nutrition, ul. Grunwaldzka, Wroclaw, Poland
| | - Beth C. Dyson
- The University of Manchester, Faculty of Life Sciences, Oxford Road, Manchester, United Kingdom
- Manchester Institute of Biotechnology, School of Chemistry, University of Manchester, United Kingdom
| | - Nicholas J. W. Rattray
- Manchester Institute of Biotechnology, School of Chemistry, University of Manchester, United Kingdom
| | - David I. Ellis
- Manchester Institute of Biotechnology, School of Chemistry, University of Manchester, United Kingdom
| | - Royston Goodacre
- Manchester Institute of Biotechnology, School of Chemistry, University of Manchester, United Kingdom
| | - Giles N. Johnson
- The University of Manchester, Faculty of Life Sciences, Oxford Road, Manchester, United Kingdom
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17
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Chapman SP, Paget CM, Johnson GN, Schwartz JM. Corrigendum: Flux balance analysis reveals acetate metabolism modulates cyclic electron flow and alternative glycolytic pathways in Chlamydomonas reinhardtii. Front Plant Sci 2016; 7:362. [PMID: 27047529 PMCID: PMC4801870 DOI: 10.3389/fpls.2016.00362] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2016] [Accepted: 03/08/2016] [Indexed: 06/05/2023]
Abstract
[This corrects the article on p. 474 in vol. 6, PMID: 26175742.].
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18
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Dyson BC, Allwood JW, Feil R, Xu Y, Miller M, Bowsher CG, Goodacre R, Lunn JE, Johnson GN. Acclimation of metabolism to light in Arabidopsis thaliana: the glucose 6-phosphate/phosphate translocator GPT2 directs metabolic acclimation. Plant Cell Environ 2015; 38:1404-17. [PMID: 25474495 PMCID: PMC4949648 DOI: 10.1111/pce.12495] [Citation(s) in RCA: 58] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2014] [Revised: 11/24/2014] [Accepted: 11/25/2014] [Indexed: 05/18/2023]
Abstract
Mature leaves of plants transferred from low to high light typically increase their photosynthetic capacity. In Arabidopsis thaliana, this dynamic acclimation requires expression of GPT2, a glucose 6-phosphate/phosphate translocator. Here, we examine the impact of GPT2 on leaf metabolism and photosynthesis. Plants of wild type and of a GPT2 knockout (gpt2.2) grown under low light achieved the same photosynthetic rate despite having different metabolic and transcriptomic strategies. Immediately upon transfer to high light, gpt2.2 plants showed a higher rate of photosynthesis than wild-type plants (35%); however, over subsequent days, wild-type plants acclimated photosynthetic capacity, increasing the photosynthesis rate by 100% after 7 d. Wild-type plants accumulated more starch than gpt2.2 plants throughout acclimation. We suggest that GPT2 activity results in the net import of glucose 6-phosphate from cytosol to chloroplast, increasing starch synthesis. There was clear acclimation of metabolism, with short-term changes typically being reversed as plants acclimated. Distinct responses to light were observed in wild-type and gpt2.2 leaves. Significantly higher levels of sugar phosphates were observed in gpt2.2. We suggest that GPT2 alters the distribution of metabolites between compartments and that this plays an essential role in allowing the cell to interpret environmental signals.
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Affiliation(s)
- Beth C Dyson
- Faculty of Life Sciences, University of Manchester, Manchester, M13 9PT, UK
| | - J William Allwood
- School of Chemistry and Manchester Institute of Biotechnology, University of Manchester, Manchester, M1 7DN, UK
| | - Regina Feil
- Max Planck Institute of Molecular Plant Physiology, 14476, Potsdam-Golm, Germany
| | - Yun Xu
- School of Chemistry and Manchester Institute of Biotechnology, University of Manchester, Manchester, M1 7DN, UK
| | - Matthew Miller
- Faculty of Life Sciences, University of Manchester, Manchester, M13 9PT, UK
| | - Caroline G Bowsher
- Faculty of Life Sciences, University of Manchester, Manchester, M13 9PT, UK
| | - Royston Goodacre
- School of Chemistry and Manchester Institute of Biotechnology, University of Manchester, Manchester, M1 7DN, UK
| | - John E Lunn
- Max Planck Institute of Molecular Plant Physiology, 14476, Potsdam-Golm, Germany
| | - Giles N Johnson
- Faculty of Life Sciences, University of Manchester, Manchester, M13 9PT, UK
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19
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Retkute R, Smith-Unna SE, Smith RW, Burgess AJ, Jensen OE, Johnson GN, Preston SP, Murchie EH. Exploiting heterogeneous environments: does photosynthetic acclimation optimize carbon gain in fluctuating light? J Exp Bot 2015; 66:2437-47. [PMID: 25788730 PMCID: PMC4629418 DOI: 10.1093/jxb/erv055] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
Plants have evolved complex mechanisms to balance the efficient use of absorbed light energy in photosynthesis with the capacity to use that energy in assimilation, so avoiding potential damage from excess light. This is particularly important under natural light, which can vary according to weather, solar movement and canopy movement. Photosynthetic acclimation is the means by which plants alter their leaf composition and structure over time to enhance photosynthetic efficiency and productivity. However there is no empirical or theoretical basis for understanding how leaves track historic light levels to determine acclimation status, or whether they do this accurately. We hypothesized that in fluctuating light (varying in both intensity and frequency), the light-response characteristics of a leaf should adjust (dynamically acclimate) to maximize daily carbon gain. Using a framework of mathematical modelling based on light-response curves, we have analysed carbon-gain dynamics under various light patterns. The objective was to develop new tools to quantify the precision with which photosynthesis acclimates according to the environment in which plants exist and to test this tool on existing data. We found an inverse relationship between the optimal maximum photosynthetic capacity and the frequency of low to high light transitions. Using experimental data from the literature we were able to show that the observed patterns for acclimation were consistent with a strategy towards maximizing daily carbon gain. Refinement of the model will further determine the precision of acclimation.
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Affiliation(s)
- Renata Retkute
- Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington Campus, LE12 5RD, UK School of Mathematical Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, UK
| | - Stephanie E Smith-Unna
- Sainsbury Laboratory, University of Cambridge, Bateman Street, Cambridge CB2 1LR, UK Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge CB2 3EA, UK
| | - Robert W Smith
- Systems and Synthetic Biology, Wageningen UR, Building 316, Dreijenplein 10, 6703HB Wageningen, Netherlands
| | - Alexandra J Burgess
- Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington Campus, LE12 5RD, UK
| | - Oliver E Jensen
- School of Mathematics, University of Manchester, Oxford Road, Manchester M13 9PL, UK
| | - Giles N Johnson
- Faculty of Life Sciences, University of Manchester, Michael Smith Building, Oxford Road, Manchester M13 9PT, UK
| | - Simon P Preston
- School of Mathematical Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, UK
| | - Erik H Murchie
- Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington Campus, LE12 5RD, UK
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20
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21
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Chapman SP, Paget CM, Johnson GN, Schwartz JM. Flux balance analysis reveals acetate metabolism modulates cyclic electron flow and alternative glycolytic pathways in Chlamydomonas reinhardtii. Front Plant Sci 2015; 6:474. [PMID: 26175742 PMCID: PMC4485056 DOI: 10.3389/fpls.2015.00474] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2015] [Accepted: 06/15/2015] [Indexed: 05/18/2023]
Abstract
Cells of the green alga Chlamydomonas reinhardtii cultured in the presence of acetate perform mixotrophic growth, involving both photosynthesis and organic carbon assimilation. Under such conditions, cells exhibit a reduced capacity for photosynthesis but a higher growth rate, compared to phototrophic cultures. Better understanding of the down regulation of photosynthesis would enable more efficient conversion of carbon into valuable products like biofuels. In this study, Flux Balance Analysis (FBA) and Flux Variability Analysis (FVA) have been used with a genome scale model of C. reinhardtii to examine changes in intracellular flux distribution in order to explain their changing physiology. Additionally, a reaction essentiality analysis was performed to identify which reaction subsets are essential for a given growth condition. Our results suggest that exogenous acetate feeds into a modified tricarboxylic acid (TCA) cycle, which bypasses the CO2 evolution steps, explaining increases in biomass, consistent with experimental data. In addition, reactions of the oxidative pentose phosphate and glycolysis pathways, inactive under phototrophic conditions, show substantial flux under mixotrophic conditions. Importantly, acetate addition leads to an increased flux through cyclic electron flow (CEF), but results in a repression of CO2 fixation via Rubisco, explaining the down regulation of photosynthesis. However, although CEF enhances growth on acetate, it is not essential-impairment of CEF results in alternative metabolic pathways being increased. We have demonstrated how the reactions of photosynthesis interconnect with carbon metabolism on a global scale, and how systems approaches play a viable tool in understanding complex relationships at the scale of the organism.
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Affiliation(s)
| | | | | | - Jean-Marc Schwartz
- *Correspondence: Jean-Marc Schwartz, Faculty of Life Sciences, University of Manchester, Michael Smith Building, Oxford Road, Manchester, M13 9PT, UK
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22
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Ogbaga CC, Stepien P, Johnson GN. Sorghum (Sorghum bicolor) varieties adopt strongly contrasting strategies in response to drought. Physiol Plant 2014; 152:389-401. [PMID: 24666264 DOI: 10.1111/ppl.12196] [Citation(s) in RCA: 47] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/16/2013] [Revised: 02/19/2014] [Accepted: 02/20/2014] [Indexed: 05/20/2023]
Abstract
Sorghum is one of the most drought tolerant crops but surprisingly, little is known about the mechanisms achieving this. We have compared physiological and biochemical responses to drought in two sorghum cultivars with contrasting drought tolerance. These closely related cultivars have starkly contrasting responses to water deficit. In the less tolerant Samsorg 40, drought induced progressive loss of photosynthesis. The more drought tolerant Samsorg 17 maintained photosynthesis, transpiration and chlorophyll content until the most extreme conditions. In Samsorg 40, there was a highly specific down-regulation of selected proteins, with loss of PSII and Rubisco but maintenance of PSI and cytochrome b6 f, allowing plants to maintain ATP synthesis. The nitrogen released allows for accumulation of glycine betaine and proline. To the best of our knowledge, this is the first example of specific reengineering of the photosynthetic apparatus in response to drought. In contrast, in Samsorg 17 we detected no substantial change in the photosynthetic apparatus. Rather, plants showed constitutively high soluble sugar concentration, enabling them to maintain transpiration and photosynthesis, even in extremely dry conditions. The implications for these strikingly contrasted strategies are discussed in relation to agricultural and natural systems.
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Affiliation(s)
- Chukwuma C Ogbaga
- Faculty of Life Sciences, The University of Manchester, Manchester, M13 9PL, UK
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23
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Dyson BC, Webster RE, Johnson GN. GPT2: a glucose 6-phosphate/phosphate translocator with a novel role in the regulation of sugar signalling during seedling development. Ann Bot 2014; 113:643-52. [PMID: 24489010 PMCID: PMC3936590 DOI: 10.1093/aob/mct298] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
BACKGROUND AND AIMS GPT2, a glucose 6-phosphate/phosphate translocator, plays an important role in environmental sensing in mature leaves of Arabidopsis thaliana. Its expression has also been detected in arabidopsis seeds and seedlings. In order to examine the role of this protein early in development, germination and seedling growth were studied. METHODS Germination, greening and establishment of seedlings were monitored in both wild-type Arabidopsis thaliana and in a gpt2 T-DNA insertion knockout line. Seeds were sown on agar plates in the presence or absence of glucose and abscisic acid. Relative expression of GPT2 in seedlings was measured using quantitative PCR. KEY RESULTS Plants lacking GPT2 expression were delayed (25-40 %) in seedling establishment, specifically in the process of cotyledon greening (rather than germination). This phenotype could not be rescued by glucose in the growth medium, with greening being hypersensitive to glucose. Germination itself was, however, hyposensitive to glucose in the gpt2 mutant. CONCLUSIONS The expression of GPT2 modulates seedling development and plays a crucial role in determining the response of seedlings to exogenous sugars during their establishment. This allows us to conclude that endogenous sugar signals function in controlling germination and the transition from heterotrophic to autotrophic growth, and that the partitioning of glucose 6-phosphate, or related metabolites, between the cytosol and the plastid modulates these developmental responses.
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Affiliation(s)
- Beth C. Dyson
- Faculty of Life Sciences, University of Manchester, Manchester M13 9PT, UK
| | - Rachel E. Webster
- The Manchester Museum, University of Manchester, Oxford Road, Manchester M13 9PL, UK
| | - Giles N. Johnson
- Faculty of Life Sciences, University of Manchester, Manchester M13 9PT, UK
- For correspondence. E-mail
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24
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Johnson GN. Reprint of: physiology of PSI cyclic electron transport in higher plants. Biochim Biophys Acta 2011; 1807:906-11. [PMID: 21620796 DOI: 10.1016/j.bbabio.2011.05.008] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/21/2010] [Revised: 11/12/2010] [Accepted: 11/13/2010] [Indexed: 11/17/2022]
Abstract
Having long been debated, it is only in the last few years that a concensus has emerged that the cyclic flow of electrons around Photosystem I plays an important and general role in the photosynthesis of higher plants. Two major pathways of cyclic flow have been identified, involving either a complex termed NDH or mediated via a pathway involving a protein PGR5 and two functions have been described-to generate ATP and to provide a pH gradient inducing non-photochemical quenching. The best evidence for the occurrence of the two pathways comes from measurements under stress conditions-high light, drought and extreme temperatures. In this review, the possible relative functions and importance of the two pathways is discussed as well as evidence as to how the flow through these pathways is regulated. Our growing knowledge of the proteins involved in cyclic electron flow will, in the future, enable us to understand better the occurrence and diversity of cyclic electron transport pathways. This article is part of a Special Issue entitled: Regulation of Electron Transport in Chloroplasts.
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25
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Bondarava N, Gross CM, Mubarakshina M, Golecki JR, Johnson GN, Krieger-Liszkay A. Putative function of cytochrome b559 as a plastoquinol oxidase. Physiol Plant 2010; 138:463-73. [PMID: 19947963 DOI: 10.1111/j.1399-3054.2009.01312.x] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
The function of cytochrome b559 (cyt b559) in photosystem II (PSII) was studied in a tobacco mutant in which the conserved phenylalanine at position 26 in the beta-subunit was changed to serine. Young leaves of the mutant showed no significant difference in chloroplast ultra structure or in the amount and activity of PSII, while in mature leaves the size of the grana stacks and the amount of PSII were significantly reduced. Mature leaves of the mutant showed a higher susceptibility to photoinhibition and a higher production of singlet oxygen, as shown by spin trapping electron paramagnetic resonance (EPR) spectroscopy. Oxygen consumption and superoxide production were studied in thylakoid membranes in which the Mn cluster was removed to ensure that all the cyt b559 was present in its low potential form. In thylakoid membranes, from wild-type plants, the larger fraction of superoxide production was 3-(3,4-dichlorophenyl)-1,1-dimethylurea-sensitive. This type of superoxide formation was absent in thylakoid membranes from the mutant. The physiological importance of the plastoquinol oxidation by cyt b559 for photosynthesis is discussed.
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Affiliation(s)
- Natallia Bondarava
- Institut für Biologie II , Universität Freiburg, Schänzlestr. 1, 79104 Freiburg, Germany
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26
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Athanasiou K, Dyson BC, Webster RE, Johnson GN. Dynamic acclimation of photosynthesis increases plant fitness in changing environments. Plant Physiol 2010; 152:366-73. [PMID: 19939944 PMCID: PMC2799370 DOI: 10.1104/pp.109.149351] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2009] [Accepted: 11/16/2009] [Indexed: 05/18/2023]
Abstract
Plants growing in different environments develop with different photosynthetic capacities--developmental acclimation of photosynthesis. It is also possible for fully developed leaves to change their photosynthetic capacity--dynamic acclimation. The importance of acclimation has not previously been demonstrated. Here, we show that developmental and dynamic acclimation are distinct processes. Furthermore, we demonstrate that dynamic acclimation plays an important role in increasing the fitness of plants in natural environments. Plants of Arabidopsis (Arabidopsis thaliana) were grown at low light and then transferred to high light for up to 9 d. This resulted in an increase in photosynthetic capacity of approximately 40%. A microarray analysis showed that transfer to high light resulted in a substantial but transient increase in expression of a gene, At1g61800, encoding a glucose-6-phosphate/phosphate translocator GPT2. Plants where this gene was disrupted were unable to undergo dynamic acclimation. They were, however, still able to acclimate developmentally. When grown under controlled conditions, fitness, measured as seed output and germination, was identical, regardless of GPT2 expression. Under naturally variable conditions, however, fitness was substantially reduced in plants lacking the ability to acclimate. Seed production was halved in gpt2- plants, relative to wild type, and germination of the seed produced substantially less. Dynamic acclimation of photosynthesis is thus shown to play a crucial and previously unrecognized role in determining the fitness of plants growing in changing environments.
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27
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Stepien P, Johnson GN. Contrasting responses of photosynthesis to salt stress in the glycophyte Arabidopsis and the halophyte thellungiella: role of the plastid terminal oxidase as an alternative electron sink. Plant Physiol 2009. [PMID: 19052149 DOI: 10.1104/pp.108] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
Abstract
The effects of short-term salt stress on gas exchange and the regulation of photosynthetic electron transport were examined in Arabidopsis (Arabidopsis thaliana) and its salt-tolerant close relative Thellungiella (Thellungiella halophila). Plants cultivated on soil were challenged for 2 weeks with NaCl. Arabidopsis showed a much higher sensitivity to salt than Thellungiella; while Arabidopsis plants were unable to survive exposure to greater than 150 mM salt, Thellugiella could tolerate concentrations as high as 500 mM with only minimal effects on gas exchange. Exposure of Arabidopsis to sublethal salt concentrations resulted in stomatal closure and inhibition of CO2 fixation. This lead to an inhibition of electron transport though photosystem II (PSII), an increase in cyclic electron flow involving only PSI, and increased nonphotochemical quenching of chlorophyll fluorescence. In contrast, in Thellungiella, although gas exchange was marginally inhibited by high salt and PSI was unaffected, there was a large increase in electron flow involving PSII. This additional electron transport activity is oxygen dependent and sensitive to the alternative oxidase inhibitor n-propyl gallate. PSII electron transport in Thellungiella showed a reduced sensitivity to 2'-iodo-6-isopropyl-3-methyl-2',4,4'-trinitrodiphenylether, an inhibitor of the cytochrome b6f complex. At the same time, we observed a substantial up-regulation of a protein reacting with antibodies raised against the plastid terminal oxidase. No such up-regulation was seen in Arabidopsis. We conclude that in salt-stressed Thellungiella, plastid terminal oxidase acts as an alternative electron sink, accounting for up to 30% of total PSII electron flow.
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Affiliation(s)
- Piotr Stepien
- Faculty of Life Sciences, Manchester M13 9PT, United Kingdom
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Stepien P, Johnson GN. Contrasting responses of photosynthesis to salt stress in the glycophyte Arabidopsis and the halophyte thellungiella: role of the plastid terminal oxidase as an alternative electron sink. Plant Physiol 2009; 149:1154-65. [PMID: 19052149 PMCID: PMC2633845 DOI: 10.1104/pp.108.132407] [Citation(s) in RCA: 221] [Impact Index Per Article: 14.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/10/2008] [Accepted: 11/26/2008] [Indexed: 05/18/2023]
Abstract
The effects of short-term salt stress on gas exchange and the regulation of photosynthetic electron transport were examined in Arabidopsis (Arabidopsis thaliana) and its salt-tolerant close relative Thellungiella (Thellungiella halophila). Plants cultivated on soil were challenged for 2 weeks with NaCl. Arabidopsis showed a much higher sensitivity to salt than Thellungiella; while Arabidopsis plants were unable to survive exposure to greater than 150 mM salt, Thellugiella could tolerate concentrations as high as 500 mM with only minimal effects on gas exchange. Exposure of Arabidopsis to sublethal salt concentrations resulted in stomatal closure and inhibition of CO2 fixation. This lead to an inhibition of electron transport though photosystem II (PSII), an increase in cyclic electron flow involving only PSI, and increased nonphotochemical quenching of chlorophyll fluorescence. In contrast, in Thellungiella, although gas exchange was marginally inhibited by high salt and PSI was unaffected, there was a large increase in electron flow involving PSII. This additional electron transport activity is oxygen dependent and sensitive to the alternative oxidase inhibitor n-propyl gallate. PSII electron transport in Thellungiella showed a reduced sensitivity to 2'-iodo-6-isopropyl-3-methyl-2',4,4'-trinitrodiphenylether, an inhibitor of the cytochrome b6f complex. At the same time, we observed a substantial up-regulation of a protein reacting with antibodies raised against the plastid terminal oxidase. No such up-regulation was seen in Arabidopsis. We conclude that in salt-stressed Thellungiella, plastid terminal oxidase acts as an alternative electron sink, accounting for up to 30% of total PSII electron flow.
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Affiliation(s)
- Piotr Stepien
- Faculty of Life Sciences, Manchester M13 9PT, United Kingdom
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Hald S, Pribil M, Leister D, Gallois P, Johnson GN. Competition between linear and cyclic electron flow in plants deficient in Photosystem I. Biochim Biophys Acta 2008; 1777:1173-83. [PMID: 18501696 DOI: 10.1016/j.bbabio.2008.04.041] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2008] [Revised: 03/20/2008] [Accepted: 04/28/2008] [Indexed: 10/22/2022]
Abstract
Photosynthetic electron transport can involve either a linear flow from water to NADP, via Photosystems (PS) II and I or a cyclic flow just involving PSI. Little is known about factors regulating the relative flow through each of these pathways. We have examined photosynthetic electron transport through each system in plants of Arabidopsis thaliana in which either the PSI-D1 or PSI-E1 subunits of PSI have been knocked out. In both cases, this results in an imbalance in the turnover of PSI and PSII, such that PSII electron transport is limited by PSI turnover. Phosphorylation of light-harvesting complex II (LHCII) and its migration to PSI is enhanced but only partially reversible and not sufficient to balance photosystem turnover. In spite of this, cyclic electron flow is able to compete efficiently with PSI across a range of conditions. In dark-adapted leaves, the efficiency of cyclic relative to linear flow induced by far-red light is increased, implying that the limiting step of cyclic flow lies in the re-injection of electrons into the electron transport chain. Illumination of leaves with white light resulted in transient induction of a significant non-photochemical quenching in knockout plants which is probably high energy state quenching induced by cyclic electron flow. At high light and at low CO(2), non-photochemical quenching was greater in the knockout plants than in the wildtype. Comparison of PSI and PSII turnover under such conditions suggested that this is generated by cyclic electron flow around PSI. We conclude that, when the concentration of PSI is limiting, cyclic electron flow is still able to compete effectively with linear flow to maintain a high DeltapH to regulate photosynthesis.
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Affiliation(s)
- Simon Hald
- Faculty of Life Sciences, University of Manchester, Michael Smith Building, Oxford Road, Manchester, M13 9PT, UK
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Hald S, Nandha B, Gallois P, Johnson GN. Feedback regulation of photosynthetic electron transport by NADP(H) redox poise. Biochim Biophys Acta 2008; 1777:433-40. [PMID: 18371296 DOI: 10.1016/j.bbabio.2008.02.007] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2007] [Revised: 02/27/2008] [Accepted: 02/27/2008] [Indexed: 10/22/2022]
Abstract
When plants experience an imbalance between the absorption of light energy and the use of that energy to drive metabolism, they are liable to suffer from oxidative stress. Such imbalances arise due to environmental conditions (e.g. heat, chilling or drought), and can result in the production of reactive oxygen species (ROS). Here, we present evidence for a novel protective process - feedback redox regulation via the redox poise of the NADP(H) pool. Photosynthetic electron transport was studied in two transgenic tobacco (Nicotiana tabacum) lines - one having reduced levels of ferredoxin NADP+-reductase (FNR), the enzyme responsible for reducing NADP+, and the other reduced levels of glyceraldehyde 3-phosphate dehydrogenase (GAPDH), the principal consumer of NADPH. Both had a similar degree of inhibition of carbon fixation and impaired electron transport. However, whilst FNR antisense plants were obviously stressed, with extensive bleaching of leaves, GAPDH antisense plants showed no visible signs of stress, beyond having a slowed growth rate. Examination of electron transport in these plants indicated that this difference is due to feedback regulation occurring in the GAPDH but not the FNR antisense plants. We propose that this reflects the occurrence of a previously undescribed regulatory pathway responding to the redox poise of the NADP(H) pool.
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Affiliation(s)
- Simon Hald
- Faculty of Life Sciences, University of Manchester, Michael Smith Building, Oxford Road, Manchester, M13 9PT, UK
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Nandha B, Finazzi G, Joliot P, Hald S, Johnson GN. The role of PGR5 in the redox poising of photosynthetic electron transport. Biochim Biophys Acta 2007; 1767:1252-9. [PMID: 17803955 DOI: 10.1016/j.bbabio.2007.07.007] [Citation(s) in RCA: 115] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2007] [Revised: 07/11/2007] [Accepted: 07/16/2007] [Indexed: 11/19/2022]
Abstract
The pgr5 mutant of Arabidopsis thaliana has been described as being deficient in cyclic electron flow around photosystem I, however, the precise role of the PGR5 protein remains unknown. To address this issue, photosynthetic electron transport was examined in intact leaves of pgr5 and wild type A. thaliana. Based on measurements of the kinetics of P700 oxidation in far red light and re-reduction following oxidation in the presence of DCMU, we conclude that this mutant is able to perform cyclic electron flow at a rate similar to the wild type. The PGR5 protein is therefore not essential for cyclic flow. However, cyclic flow is affected by the pgr5 mutation under conditions where this process is normally enhanced in wild type leaves, i.e. high light or low CO(2) concentrations resulted in enhancement of cyclic electron flow. This suggests a different capacity to regulate cyclic flow in response to environmental stimuli in the mutant. We also show that the pgr5 mutant is affected in the redox poising of the chloroplast, with the electron transport chain being substantially reduced under most conditions. This may result in defective feedback regulation of photosynthetic electron transport under some conditions, thus providing a rationale for the reduced efficiency of cyclic electron flow.
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Affiliation(s)
- Beena Nandha
- Faculty of Life Sciences, University of Manchester, 3.614 Stopford Building Oxford Road, Manchester, UK
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32
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Abstract
We have investigated the occurrence of cyclic electron flow in intact spinach leaves. In particular, we have tested the hypothesis that cyclic flow requires the presence of supercomplexes in the thylakoid membrane or other strong associations between proteins. Using biochemical approaches, we found no evidence of the presence of supercomplexes related to cyclic electron flow, making previous structural explanations for the modulation of cyclic flow rather unlikely. On the other hand, we found that the fraction of photosystem I complexes engaged in cyclic flow could be modulated by changes in the redox state of the chloroplast stroma. Our findings support therefore a dynamic model for the occurrence of linear and cyclic electron flow in C3 plants, based on the competition between cytochrome b(6)f and FNR for electrons carried by ferredoxin. This would be ultimately regulated by the balance between the redox state of PSI acceptors and donors during photosynthesis, in a diffusing system.
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Affiliation(s)
- Cécile Breyton
- UMR-7099, CNRS-Université Paris-7, Institut de Biologie Physico-Chimique, Paris, France
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Finazzi G, Johnson GN, Dall'Osto L, Zito F, Bonente G, Bassi R, Wollman FA. Nonphotochemical Quenching of Chlorophyll Fluorescence inChlamydomonas reinhardtii. Biochemistry 2006; 45:1490-8. [PMID: 16445291 DOI: 10.1021/bi0521588] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Unlike plants, Chlamydomonas reinhardtii shows a restricted ability to develop nonphotochemical quenching upon illumination. Most of this limited quenching is due to state transitions instead of DeltapH-driven high-energy state quenching, qE. The latter could only be observed when the ability of the cells to perform photosynthesis was impaired, either by lowering temperature to approximately 0 degrees C or in mutants lacking RubisCO activity. Two main features were identified that account for the low level of qE in Chlamydomonas. On one hand, the electrochemical proton gradient generated upon illumination is apparently not sufficient to promote fluorescence quenching. On the other hand, the capacity to transduce the presence of a DeltapH into a quenching response is also intrinsically decreased in this alga, when compared to plants. The possible mechanism leading to these differences is discussed.
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Affiliation(s)
- Giovanni Finazzi
- Unité Mixte de Recherche 7141 CNRS, Université Paris 6, Institut de Biologie Physico-Chimique, 75005 Paris, France.
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Golding AJ, Joliot P, Johnson GN. Equilibration between cytochrome f and P700 in intact leaves. Biochimica et Biophysica Acta (BBA) - Bioenergetics 2005; 1706:105-9. [PMID: 15620370 DOI: 10.1016/j.bbabio.2004.09.011] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2004] [Revised: 08/13/2004] [Accepted: 09/28/2004] [Indexed: 11/20/2022]
Abstract
Electron transport between the two photosynthetic reaction centres of high plants is mediated by plastoquinone, a rieske iron-sulfur centre, cytochrome f and plastocyanin. Measurements of redox equilibration amongst these have produced confusing results, with apparent equilibrium constants being estimated that are inconsistent with in vitro measurements of redox midpoint potentials of the components concerned. We have critically reexamined methods for deconvoluting cytochrome f absorbance signals in intact leaves. We have determined the decay of cytochrome f+ following light to dark transitions from steady state and compared this with the decay of the oxidised photosystem I primary donor, P700+. Measurements across a wide range of different irradiances and CO2 concentrations were all consistent with cyt f and P700 existing in redox equilibrium, with a potential difference of around 117 mV. These results are discussed in relation to our understanding of the organisation of the photosynthetic electron transport. They also have implications for measurements of PSI electron flux--provided more than about 20% of P700+ is oxidised in the light, then the initial decay in the concentration of P700+ following a light to dark transition provides a good estimate of electron flux through PSI. Where P700 is largely reduced in the light, net reduction of cyt f+ might need to be corrected for.
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Affiliation(s)
- Alison J Golding
- School of Biological Sciences, University of Manchester, 3.614 Stopford Building, Oxford Road, Manchester, M13 9PT, UK
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Abstract
The phenomenon of cyclic electron transport was first characterized in higher plant chloroplasts 50 years ago, yet there is still a debate about whether or not this is a physiological process. The recent isolation of mutants that appear to lack cyclic electron transport, as well as new data providing functional evidence for its occurrence, support the notion that this pathway plays an important role in plant responses to stress, providing a pH gradient across the thylakoid membrane to trigger non-photochemical quenching of chlorophyll fluorescence. At present, little is known about the regulation of cyclic electron transport, but it is possible that this is activated in response to a low redox potential in the chloroplast stroma.
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Affiliation(s)
- Giles N Johnson
- School of Biological Sciences, University of Manchester, 3.614 Stopford Building, Oxford Road, Manchester M13 9PT, UK.
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Golding AJ, Finazzi G, Johnson GN. Reduction of the thylakoid electron transport chain by stromal reductants--evidence for activation of cyclic electron transport upon dark adaptation or under drought. Planta 2004; 220:356-63. [PMID: 15316779 DOI: 10.1007/s00425-004-1345-z] [Citation(s) in RCA: 62] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2004] [Accepted: 06/12/2004] [Indexed: 05/06/2023]
Abstract
The reduction of P700(+), the primary electron donor of photosystem I (PSI), following a saturating flash of white light in the presence of the photosystem II (PSII) inhibitor 3-(3.4-dichlorophenyl)-1,1-dimethylurea (DCMU), was examined in barley plants exposed to a variety of conditions. The decay kinetic fitted to a double exponential decay curve, implying the presence of two distinct pools of PSI. A fast component, with a rate constant for decay of around 0.03-0.04 ms(-1) was observed to be sensitive to the duration of illumination. This rate constant was slower than, but comparable to, that observed in non-inhibited samples (i.e. where linear flow was active). It was substantially faster than values typically reported for experiments where PSII activity is inhibited. The magnitude of this component rose in leaves that were dark-adapted or exposed to drought. This component was assigned to PSI centres involved in cyclic electron transport. The remaining slowly decaying P700(+) population (rate constant of around 0.001-0.002 ms(-1)) was assigned to centres normally involved in linear electron transport (but inhibited here because of the presence of DCMU), or inactivated centres involved in the cyclic pathway. Processes that might regulate the relative flux through cyclic electron transport are discussed.
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Affiliation(s)
- Alison J Golding
- School of Biological Sciences, University of Manchester, 3.614 Stopford Building, Oxford Road, Manchester, M13 9PT, UK
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Hermans C, Johnson GN, Strasser RJ, Verbruggen N. Physiological characterisation of magnesium deficiency in sugar beet: acclimation to low magnesium differentially affects photosystems I and II. Planta 2004; 220:344-55. [PMID: 15378366 DOI: 10.1007/s00425-004-1340-4] [Citation(s) in RCA: 70] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/17/2004] [Accepted: 06/17/2004] [Indexed: 05/03/2023]
Abstract
Magnesium deficiency in plants is a widespread problem, affecting productivity and quality in agriculture, yet at a physiological level it has been poorly studied in crop plants. Here, a physiological characterization of Mg deficiency in Beta vulgaris L., an important crop model, is presented. The impact of Mg deficiency on plant growth, mineral profile and photosynthetic activity was studied. The aerial biomass of plants decreased after 24 days of hydroponic culture in Mg-free nutrient solution, whereas the root biomass was unaffected. Analysis of mineral profiles revealed that Mg decreased more rapidly in roots than in shoots and that shoot Mg content could fall to 3 mg g(-1) DW without chlorosis development and with no effect on photosynthetic parameters. Sucrose accumulated in most recently expanded leaves before any loss in photosynthetic activity. During the development of Mg deficiency, the two photosystems showed sharply contrasting responses. Data were consistent with a down-regulation of PSII through a loss of antenna, and of PSI primarily through a loss of reaction centres. In each case, the net result was a decrease in the overall rate of linear electron transport, preventing an excess of reductant being produced during conditions under which sucrose export away from mature leaf was restricted.
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Affiliation(s)
- Christian Hermans
- Laboratoire de Physiologie et de Génétique Moléculaire des Plantes, Université Libre de Bruxelles, 1050 Brussels, Belgium
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Finazzi G, Johnson GN, Dall'Osto L, Dallosto L, Joliot P, Wollman FA, Bassi R. A zeaxanthin-independent nonphotochemical quenching mechanism localized in the photosystem II core complex. Proc Natl Acad Sci U S A 2004; 101:12375-80. [PMID: 15304641 PMCID: PMC514483 DOI: 10.1073/pnas.0404798101] [Citation(s) in RCA: 118] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Illumination of dark-adapted barley plants with low light transiently induced a large nonphotochemical quenching of chlorophyll fluorescence. This reaction was identified as a form of high-energy-state quenching. Its appearance was not accompanied by zeaxanthin synthesis but was associated with a reversible inactivation of a fraction of photosystem II (PSII) centers. Both the fluorescence quenching and PSII inactivation relaxed in parallel with the activation of the Calvin cycle. We interpret the induction of this phenomenon as due to the generation of a quenched state in the PSII core complex. This reaction is probably caused by the transient overacidification of the thylakoid lumen, whereas its dissipation results from the relaxation of both the pH gradient across the thylakoid membrane and redox pressure upon activation of carbon fixation. At saturating light intensities, inactivation of PSII was still observed at the onset of illumination, although its recovery did not result in dissipation of high-energy quenching, which presents typical characteristics of an antenna-associated quenching at steady state. Reaction-center quenching seems therefore to be a common transient feature during illumination, being replaced by other phenomena (photochemical or antenna quenching and photoinhibition), depending on the balance between light and carbon fixation fluxes.
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Affiliation(s)
- Giovanni Finazzi
- Unité Propre de Recherche, 1261 Centre National de la Recherche Scientifique (Associé Université Paris VI), Institut de Biologie Physico Chimique, 13 Rue Pierre et Marie Curie, 75005 Paris, France.
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Golding AJ, Johnson GN. Down-regulation of linear and activation of cyclic electron transport during drought. Planta 2003; 218:107-14. [PMID: 12883889 DOI: 10.1007/s00425-003-1077-5] [Citation(s) in RCA: 58] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/25/2003] [Accepted: 05/21/2003] [Indexed: 05/02/2023]
Abstract
The effects of short-term drought on the regulation of electron transport through photosystems I and II (PSI and PSII) have been studied in Hordeum vulgare L. cv. Chariot. Fluorescence measurements demonstrated that electron flow through PSII decreased in response to both drought and CO2 limitation. This was due to regulation, as opposed to photoinhibition. We demonstrate that this regulation occurs between the two photosystems--in contrast to PSII, PSI became more oxidised and the rate constant for P700 re-reduction decreased under these conditions. Thus, when carbon fixation is inhibited, electron transport is down-regulated to match the reduced requirement for electrons and minimise reactive oxygen production. At the same time non-photochemical quenching (NPQ) increases, alleviating the excitation pressure placed on PSII. We observe an increase in the proportion of PSI centres that are 'active' (i.e. can be oxidised with a saturating flash and then rapidly re-reduced) under the conditions when NPQ is increased. We suggest that these additional centres are primarily involved in cyclic electron transport, which generates the DeltapH to support NPQ and protect PSII.
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Affiliation(s)
- Alison J Golding
- School of Biological Sciences, University of Manchester, 3.164 Stopford Building, Oxford Road, Manchester, M13 9PT, UK
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40
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Abstract
Avoidance of over-reduction of the chloroplast ferredoxin pool is of paramount importance for plants in avoiding oxidative stress. The redox state of this pool can be controlled through regulation of the thylakoid electron transport chain. A model is presented for regulation of this chain via a thiol reduction mechanism, possibly involving a thioredoxin. It is shown in isolated thylakoids that electron transport is inhibited by the thiol reducing agent dithiothreitol. The kinetics of this reduction are rapid and readily reversible. The midpoint redox potential is -365 mV at pH 7.7, with a pH dependency of about -90 mV/pH. At physiological pH values, this places the potential of the species titrated between that of ferredoxin and NADPH and thus in the right potential range to be regulating the redox poise of the ferredoxin pool. This is also close to the potential of NADPH-malate dehydrogenase, an enzyme known to be regulated by thioredoxin. Regulation of electron transport by thioredoxin provides a mechanistic link between the regulation of photosynthesis and gene expression by sugars and the redox regulation of gene expression mediated through the plastoquinone pool.
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Affiliation(s)
- Giles N Johnson
- School of Biological Sciences, University of Manchester, 3.614 Stopford Building, Oxford Road, Manchester, England M13 9PT.
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41
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Abstract
The effect of temperature on the rate of electron transfer through photosystems I and II (PSI and PSII) was investigated in leaves of barley (Hordeum vulgare L.). Measurements of PSI and PSII photochemistry were made in 21% O2 and in 2% O2, to limit electron transport to O2 in the Mehler reaction. Measurements were made in the presence of saturating CO2 concentrations to suppress photorespiration. It was observed that the O2 dependency of PSII electron transport is highly temperature dependent. At 10 degrees C, the quantum yield of PSII (phi PSII) was insensitive to O2 concentration, indicating that there was no Mehler reaction operating. At high temperatures (> 25 degrees C) a substantial reduction in phi PSII was observed when the O2 concentration was reduced. However, under the same conditions, there was no effect of O2 concentration on the delta pH-dependent process of non-photochemical quenching. The rate of electron transport through PSI was also found to be independent of O2 concentration across the temperature range. We conclude that the Mehler reaction is not important in maintaining a thylakoid proton gradient that is capable of controlling PSII activity, and present evidence that cyclic electron transport around PSI acts to maintain membrane energisation at low temperature.
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Affiliation(s)
- J E Clarke
- School of Biological Sciences, University of Manchester, 3.614 Stopford Building, Oxford Road, Manchester, M13 9PT, UK
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42
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Abstract
Photoinhibition of photosystem II (PS II) activity was studied in thylakoid membranes illuminated in the presence of the inhibitor of the cytochrome b(6)f complex 2'iodo-6-isopropyl-3-methyl-2',4, 4'-trinitrodiphenylether (DNP-INT). DNP-INT was found to decrease photoinhibition. In the absence of DNP-INT, anaerobosis, superoxide dismutase and catalase protected against photoinhibition. No effect of these treatments was observed in the presence of DNP-INT. These data demonstrate that photoinhibition under these conditions is caused by reactive oxygen species which are formed most probably by the reduction of oxygen at photosystem I. The results are discussed in terms of the importance of photosynthetic control in protection against photoinhibition in vivo.
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Abstract
Trichomanes speciosum is a threatened species restricted to sheltered, very humid sites. Uniquely amongst European ferns, differing ecological tolerances of the gametophyte and sporophyte generations are manifested as widely differing distributions. The perennial, vegetatively propagating gametophyte persists in drier, colder, darker habitats than the sporophyte. In sites where the gametophyte grows, light availability was found to be < 1 μmol m2 s1 for approx. 85% of daylight hours, rarely or (in some sites) never rising above 10 μmol m2 s1 . Much of the time, light was < 0.01% of full sunlight. Measurements of gas exchange and chlorophyll fluorescence yield show that these plants have optimal photosynthesis at light intensities c. 5-10 μmol m2 s1 , the highest light to which they are normally exposed to in their natural environment. The absence of any capacity for reversible nonphotochemical fluorescence quenching means that there is little or no protection of the photosynthetic apparatus from light-induced damage. We conclude that these plants are able to create what are essentially monocultures in their extreme environments only because of a combination of low metabolic rate (at low temperatures) and an ability to make efficient use of what little light is available to them by morphological and physiological means.
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Affiliation(s)
- G N Johnson
- 1 School of Biological Sciences, University of Manchester, 3.614 Stopford Building, Oxford Road, Manchester M13 9PT, UK
| | - F J Rumsey
- 1 School of Biological Sciences, University of Manchester, 3.614 Stopford Building, Oxford Road, Manchester M13 9PT, UK
| | - A D Headley
- 1 School of Biological Sciences, University of Manchester, 3.614 Stopford Building, Oxford Road, Manchester M13 9PT, UK
| | - E Sheffield
- 1 School of Biological Sciences, University of Manchester, 3.614 Stopford Building, Oxford Road, Manchester M13 9PT, UK
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Abstract
Chlorophyll fluorescence analysis has become one of the most powerful and widely used techniques available to plant physiologists and ecophysiologists. This review aims to provide an introduction for the novice into the methodology and applications of chlorophyll fluorescence. After a brief introduction into the theoretical background of the technique, the methodology and some of the technical pitfalls that can be encountered are explained. A selection of examples is then used to illustrate the types of information that fluorescence can provide.
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Affiliation(s)
- K Maxwell
- Department of Agricultural and Environmental Science, University Newcastle upon Tyne, UK
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45
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Abstract
Chlorophyll fluorescence analysis has become one of the most powerful and widely used techniques available to plant physiologists and ecophysiologists. This review aims to provide an introduction for the novice into the methodology and applications of chlorophyll fluorescence. After a brief introduction into the theoretical background of the technique, the methodology and some of the technical pitfalls that can be encountered are explained. A selection of examples is then used to illustrate the types of information that fluorescence can provide.
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Affiliation(s)
- K Maxwell
- Department of Agricultural and Environmental Science, University Newcastle upon Tyne, UK
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46
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Abstract
This paper describes a study into the potential of plants to acclimate to light environments that fluctuate over time periods between 15 min and 3 h. Plants of Arabidopsis thaliana (L.) Heynh., Digitalis purpurea L. and Silene dioica (L.) Clairv. were grown at an irradiance 100 mumol m(-2) s(-1). After 4-6 weeks, they were transferred to light regimes that fluctuated between 100 and either 475 or 810 mumol m(-2) s(-1), in a regular cycle, for 7 days. Plants were shown, in most cases, to be able to undergo photosynthetic acclimation under such conditions, increasing maximum photosynthetic rate. The extent of acclimation varied between species. A more detailed study with S. dioica showed that this acclimation involved changes in both Rubisco protein and cytochrome f content, with only marginal changes in pigment content and composition. Acclimation to fluctuating light, at the protein level, did not fully reflect the acclimation to continuous high light - Rubisco protein increased more than would be expected from the mean irradiance, but less than expected from the high irradiance; cytochrome f increased when neither the mean nor the high irradiance would be expected to induce an increase.
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Affiliation(s)
- Z H Yin
- School of Biological Sciences, 3.614 Stopford Building, The University of Manchester, Oxford Road, Manchester, M13 9PT, UK
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Johnson GN, Rutherford A, Krieger A. A change in the midpoint potential of the quinone QA in Photosystem II associated with photoactivation of oxygen evolution. Biochimica et Biophysica Acta (BBA) - Bioenergetics 1995. [DOI: 10.1016/0005-2728(95)00003-2] [Citation(s) in RCA: 90] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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Krieger A, Rutherford A, Johnson GN. On the determination of redox midpoint potential of the primary quinone electron acceptor, QA, in Photosystem II. Biochimica et Biophysica Acta (BBA) - Bioenergetics 1995. [DOI: 10.1016/0005-2728(95)00002-z] [Citation(s) in RCA: 81] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
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49
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Palahniuk RJ, Doig GA, Johnson GN, Pash MP. Maternal halothane anesthesis reduces cerebral blood flow in the acidotic sheep fetus. Anesth Analg 1980; 59:35-9. [PMID: 7188664] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
Cerebrovascular autoregulation is lost during fetal asphyxia as cerebral vessels undergo compensatory vasodilation. In such a situation, maternal anesthetics, which decrease fetal arterial blood pressure and cardiac output, may further aggravate cerebral hypoxia. To examine this possibility, we prepared six pregnant ewes in such a manner as to be able to measure fetal regional cerebral blood flow in utero during acidosis produced by partial umbilical cord compression both before and after 15 minutes of halothane anesthesia given to the mother. Umbilical cord compression in the absence of anesthesia caused fetal metabolic and respiratory acidosis as evidenced by a decrease in arterial pH from 7.34 to 7.05; fetal arterial oxygen saturation simultaneously decreased from 29 to 17%. Halothane anesthesia administered to the mother of the acidotic fetus caused further aggravation of fetal acidosis (arterial pH 6.85) and oxygen desaturation (10%) and the fetus became markedly hypotensive. Blood flow to four cerebral areas increased 27 to 69% above control levels in the fetus during acidosis in the absence of maternal anesthesia but decreased to levels 30 to 42% below acidosis values when maternal anesthesia was combined with fetal acidosis. These data suggest that potent cardiovascular depressant anesthetics administered to the mother in the presence of fetal acidosis could decrease fetal cerebral oxygen delivery by interfering with fetal cardiovascular compensation during acidosis and reducing fetal cerebral blood flow.
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Johnson GN, Palahniuk RJ, Tweed WA, Jones MV, Wade JG. Regional cerebral blood flow changes during severe fetal asphyxia produced by slow partial umbilical cord compression. Am J Obstet Gynecol 1979; 135:48-52. [PMID: 38666] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
We studied the effects of severe partial asphyxia on regional cerebral blood flow and arterial blood pressure in the unanesthetized, physiologically stable fetal lamb. Cerebral blood flow was measured by the microsphere technique before and during partial umbilical cord compression. Asphyxia sufficient to decrease pH from 7.40 to 7.04 and reduce oxygen saturation from 50% to 19% increased cerebral blood flow to all areas of the brain with the largest increases going to the brain stem (275% of control) and deep cerebral structures (240% of control). Fetal arterial blood pressures increased from a mean of 58 mm Hg to a mean of 71 mm. Hg during asphyxia. The blood pressure increases correlated closely with the regional cerebral blood flow increases. There was a poor correlation between cerebral blood flow increases and changes in Paco2' pH, or oxygen saturation. We conclude that during severe fetal asphyxia arterial blood pressure is the critical factor in determining cerebral blood flow.
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