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Fitzpatrick MJ, Krizan J, Hsiang JC, Shen N, Kerschensteiner D. A pupillary contrast response in mice and humans: Neural mechanisms and visual functions. Neuron 2024; 112:2404-2422.e9. [PMID: 38697114 PMCID: PMC11257825 DOI: 10.1016/j.neuron.2024.04.012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2023] [Revised: 12/21/2023] [Accepted: 04/10/2024] [Indexed: 05/04/2024]
Abstract
In the pupillary light response (PLR), increases in ambient light constrict the pupil to dampen increases in retinal illuminance. Here, we report that the pupillary reflex arc implements a second input-output transformation; it senses temporal contrast to enhance spatial contrast in the retinal image and increase visual acuity. The pupillary contrast response (PCoR) is driven by rod photoreceptors via type 6 bipolar cells and M1 ganglion cells. Temporal contrast is transformed into sustained pupil constriction by the M1's conversion of excitatory input into spike output. Computational modeling explains how the PCoR shapes retinal images. Pupil constriction improves acuity in gaze stabilization and predation in mice. Humans exhibit a PCoR with similar tuning properties to mice, which interacts with eye movements to optimize the statistics of the visual input for retinal encoding. Thus, we uncover a conserved component of active vision, its cell-type-specific pathway, computational mechanisms, and optical and behavioral significance.
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Affiliation(s)
- Michael J Fitzpatrick
- Department of Ophthalmology and Visual Sciences, Washington University School of Medicine in St. Louis, St. Louis, MO 63110, USA; Graduate Program in Neuroscience, Washington University School of Medicine in St. Louis, St. Louis, MO 63110, USA; Medical Scientist Training Program, Washington University School of Medicine in St. Louis, St. Louis, MO 63110, USA
| | - Jenna Krizan
- Department of Ophthalmology and Visual Sciences, Washington University School of Medicine in St. Louis, St. Louis, MO 63110, USA; Graduate Program in Neuroscience, Washington University School of Medicine in St. Louis, St. Louis, MO 63110, USA
| | - Jen-Chun Hsiang
- Department of Ophthalmology and Visual Sciences, Washington University School of Medicine in St. Louis, St. Louis, MO 63110, USA
| | - Ning Shen
- Department of Ophthalmology and Visual Sciences, Washington University School of Medicine in St. Louis, St. Louis, MO 63110, USA
| | - Daniel Kerschensteiner
- Department of Ophthalmology and Visual Sciences, Washington University School of Medicine in St. Louis, St. Louis, MO 63110, USA; Department of Neuroscience, Washington University School of Medicine in St. Louis, St. Louis, MO 63110, USA; Department of Biomedical Engineering, Washington University School of Medicine in St. Louis, St. Louis, MO 63110, USA.
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2
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Franke K, Cai C, Ponder K, Fu J, Sokoloski S, Berens P, Tolias AS. Asymmetric distribution of color-opponent response types across mouse visual cortex supports superior color vision in the sky. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2023.06.01.543054. [PMID: 37333280 PMCID: PMC10274736 DOI: 10.1101/2023.06.01.543054] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/20/2023]
Abstract
Color is an important visual feature that informs behavior, and the retinal basis for color vision has been studied across various vertebrate species. While many studies have investigated how color information is processed in visual brain areas of primate species, we have limited understanding of how it is organized beyond the retina in other species, including most dichromatic mammals. In this study, we systematically characterized how color is represented in the primary visual cortex (V1) of mice. Using large-scale neuronal recordings and a luminance and color noise stimulus, we found that more than a third of neurons in mouse V1 are color-opponent in their receptive field center, while the receptive field surround predominantly captures luminance contrast. Furthermore, we found that color-opponency is especially pronounced in posterior V1 that encodes the sky, matching the statistics of natural scenes experienced by mice. Using unsupervised clustering, we demonstrate that the asymmetry in color representations across cortex can be explained by an uneven distribution of green-On/UV-Off color-opponent response types that are represented in the upper visual field. Finally, a simple model with natural scene-inspired parametric stimuli shows that green-On/UV-Off color-opponent response types may enhance the detection of "predatory"-like dark UV-objects in noisy daylight scenes. The results from this study highlight the relevance of color processing in the mouse visual system and contribute to our understanding of how color information is organized in the visual hierarchy across species.
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Affiliation(s)
- Katrin Franke
- Department of Ophthalmology, Byers Eye Institute, Stanford University School of Medicine, Stanford, CA, US
- Stanford Bio-X, Stanford University, Stanford, CA, US
- Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA, US
- Department of Neuroscience & Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
| | - Chenchen Cai
- Institute for Ophthalmic Research, University of Tübingen, Tübingen, Germany
- Graduate Training Center of Neuroscience, International Max Planck Research School, University of Tübingen, Tübingen, Germany
| | - Kayla Ponder
- Department of Neuroscience & Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
| | - Jiakun Fu
- Department of Neuroscience & Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
| | - Sacha Sokoloski
- Institute for Ophthalmic Research, University of Tübingen, Tübingen, Germany
- Hertie Institute for AI in Brain Health, University of Tübingen, Tübingen, Germany
| | - Philipp Berens
- Institute for Ophthalmic Research, University of Tübingen, Tübingen, Germany
- Hertie Institute for AI in Brain Health, University of Tübingen, Tübingen, Germany
| | - Andreas S Tolias
- Department of Ophthalmology, Byers Eye Institute, Stanford University School of Medicine, Stanford, CA, US
- Stanford Bio-X, Stanford University, Stanford, CA, US
- Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA, US
- Department of Neuroscience & Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
- Department of Electrical Engineering, Stanford University, Stanford, CA, US
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3
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Krizan J, Song X, Fitzpatrick MJ, Shen N, Soto F, Kerschensteiner D. Predation without direction selectivity. Proc Natl Acad Sci U S A 2024; 121:e2317218121. [PMID: 38483997 PMCID: PMC10962952 DOI: 10.1073/pnas.2317218121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2023] [Accepted: 01/27/2024] [Indexed: 03/19/2024] Open
Abstract
Across the animal kingdom, visual predation relies on motion-sensing neurons in the superior colliculus (SC) and its orthologs. These neurons exhibit complex stimulus preferences, including direction selectivity, which is thought to be critical for tracking the unpredictable escape routes of prey. The source of direction selectivity in the SC is contested, and its contributions to predation have not been tested experimentally. Here, we use type-specific cell removal to show that narrow-field (NF) neurons in the mouse SC guide predation. In vivo recordings demonstrate that direction-selective responses of NF cells are independent of recently reported stimulus-edge effects. Monosynaptic retrograde tracing reveals that NF cells receive synaptic input from direction-selective ganglion cells. When we eliminate direction selectivity in the retina of adult mice, direction-selective responses in the SC, including in NF cells, are lost. However, eliminating retinal direction selectivity does not affect the hunting success or strategies of mice, even when direction selectivity is removed after mice have learned to hunt, and despite abolishing the gaze-stabilizing optokinetic reflex. Thus, our results identify the retinal source of direction selectivity in the SC. They show that NF cells in the SC guide predation, an essential spatial orienting task, independent of their direction selectivity, revealing behavioral multiplexing of complex neural feature preferences and highlighting the importance of feature-selective manipulations for neuroethology.
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Affiliation(s)
- Jenna Krizan
- Department of Ophthalmology and Visual Sciences, Washington University School of Medicine, St. Louis, MO63110
- Graduate program in Neuroscience, Roy and Diana Vagelos Division of Biology and Biomedical Sciences, Washington University School of Medicine, St. Louis, MO63110
| | - Xiayingfang Song
- Department of Ophthalmology and Visual Sciences, Washington University School of Medicine, St. Louis, MO63110
- Graduate program in Biomedical Engineering, Department of Biomedical Engineering, Washington University in St. Louis, St. Louis, MO63130
| | - Michael J. Fitzpatrick
- Department of Ophthalmology and Visual Sciences, Washington University School of Medicine, St. Louis, MO63110
- Graduate program in Neuroscience, Roy and Diana Vagelos Division of Biology and Biomedical Sciences, Washington University School of Medicine, St. Louis, MO63110
| | - Ning Shen
- Department of Ophthalmology and Visual Sciences, Washington University School of Medicine, St. Louis, MO63110
| | - Florentina Soto
- Department of Ophthalmology and Visual Sciences, Washington University School of Medicine, St. Louis, MO63110
| | - Daniel Kerschensteiner
- Department of Ophthalmology and Visual Sciences, Washington University School of Medicine, St. Louis, MO63110
- Department of Neuroscience, Washington University School of Medicine, St. Louis, MO63110
- Department of Biomedical Engineering, Washington University in St. Louis, St. Louis, MO63130
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4
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Zhang J, Gong C, Yang Z, Wei F, Sun X, Ji J, Zeng Y, Chang CF, Liu X, Nair DSR, Thomas BB, Zhou Q. Ultrasound Flow Imaging Study on Rat Brain with Ultrasound and Light Stimulations. Bioengineering (Basel) 2024; 11:174. [PMID: 38391660 PMCID: PMC10886342 DOI: 10.3390/bioengineering11020174] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2023] [Revised: 01/29/2024] [Accepted: 02/08/2024] [Indexed: 02/24/2024] Open
Abstract
Functional ultrasound (fUS) flow imaging provides a non-invasive method for the in vivo study of cerebral blood flow and neural activity. This study used functional flow imaging to investigate rat brain's response to ultrasound and colored-light stimuli. Male Long-Evan rats were exposed to direct full-field strobe flashes light and ultrasound stimulation to their retinas, while brain activity was measured using high-frequency ultrasound imaging. Our study found that light stimuli, particularly blue light, elicited strong responses in the visual cortex and lateral geniculate nucleus (LGN), as evidenced by changes in cerebral blood volume (CBV). In contrast, ultrasound stimulation elicited responses undetectable with fUS flow imaging, although these were observable when directly measuring the brain's electrical signals. These findings suggest that fUS flow imaging can effectively differentiate neural responses to visual stimuli, with potential applications in understanding visual processing and developing new diagnostic tools.
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Affiliation(s)
- Junhang Zhang
- Department of Biomedical Engineering, University of Southern California, Los Angeles, CA 90089, USA
- Department of Ophthalmology, USC Roski Eye Institute, Keck School of Medicine of the University of Southern California, Los Angeles, CA 90033, USA
| | - Chen Gong
- Department of Biomedical Engineering, University of Southern California, Los Angeles, CA 90089, USA
- Department of Ophthalmology, USC Roski Eye Institute, Keck School of Medicine of the University of Southern California, Los Angeles, CA 90033, USA
| | - Zihan Yang
- Caruso Department of Otolaryngology-Head & Neck Surgery, University of Southern California, Los Angeles, CA 90033, USA
| | - Fan Wei
- Department of Biomedical Engineering, University of Southern California, Los Angeles, CA 90089, USA
| | - Xin Sun
- Department of Biomedical Engineering, University of Southern California, Los Angeles, CA 90089, USA
| | - Jie Ji
- Department of Biomedical Engineering, University of Southern California, Los Angeles, CA 90089, USA
| | - Yushun Zeng
- Department of Biomedical Engineering, University of Southern California, Los Angeles, CA 90089, USA
| | - Chi-Feng Chang
- Department of Biomedical Engineering, University of Southern California, Los Angeles, CA 90089, USA
- Department of Ophthalmology, USC Roski Eye Institute, Keck School of Medicine of the University of Southern California, Los Angeles, CA 90033, USA
| | - Xunan Liu
- Department of Biomedical Engineering, University of Southern California, Los Angeles, CA 90089, USA
| | - Deepthi S Rajendran Nair
- Department of Ophthalmology, USC Roski Eye Institute, Keck School of Medicine of the University of Southern California, Los Angeles, CA 90033, USA
| | - Biju B Thomas
- Department of Ophthalmology, USC Roski Eye Institute, Keck School of Medicine of the University of Southern California, Los Angeles, CA 90033, USA
| | - Qifa Zhou
- Department of Biomedical Engineering, University of Southern California, Los Angeles, CA 90089, USA
- Department of Ophthalmology, USC Roski Eye Institute, Keck School of Medicine of the University of Southern California, Los Angeles, CA 90033, USA
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5
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Feord RC, Gomoliszewska A, Pienaar A, Mouland JW, Brown TM. Colour opponency is widespread across the mouse subcortical visual system and differentially targets GABAergic and non-GABAergic neurons. Sci Rep 2023; 13:9313. [PMID: 37291239 PMCID: PMC10250360 DOI: 10.1038/s41598-023-35885-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2022] [Accepted: 05/25/2023] [Indexed: 06/10/2023] Open
Abstract
Colour vision plays many important roles in animal behaviour but the brain pathways processing colour remain surprisingly poorly understood, including in the most commonly used laboratory mammal, mice. Indeed, particular features of mouse retinal organisation present challenges in defining the mechanisms underlying colour vision in mice and have led to suggestions that this may substantially rely on 'non-classical' rod-cone opponency. By contrast, studies using mice with altered cone spectral sensitivity, to facilitate application of photoreceptor-selective stimuli, have revealed widespread cone-opponency across the subcortical visual system. To determine the extent to which such findings are truly reflective of wildtype mouse colour vision, and facilitate neural circuit mapping of colour-processing pathways using intersectional genetic approaches, we here establish and validate stimuli for selectively manipulating excitation of the native mouse S- and M-cone opsin classes. We then use these to confirm the widespread appearance of cone-opponency (> 25% of neurons) across the mouse visual thalamus and pretectum. We further extend these approaches to map the occurrence of colour-opponency across optogenetically identified GABAergic (GAD2-expressing) cells in key non-image forming visual centres (pretectum and intergeniculate leaflet/ventral lateral geniculate; IGL/vLGN). Strikingly, throughout, we find S-ON/M-OFF opponency is specifically enriched in non-GABAergic cells, with identified GABAergic cells in the IGL/VLGN entirely lacking this property. Collectively, therefore, we establish an important new approach for studying cone function in mice, confirming a surprisingly extensive appearance of cone-opponent processing in the mouse visual system and providing new insight into functional specialisation of the pathways processing such signals.
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Affiliation(s)
- R C Feord
- Centre for Biological Timing, Faculty of Biology, Medicine and Health, University of Manchester, Manchester, UK
| | - A Gomoliszewska
- Centre for Biological Timing, Faculty of Biology, Medicine and Health, University of Manchester, Manchester, UK
| | - A Pienaar
- Centre for Biological Timing, Faculty of Biology, Medicine and Health, University of Manchester, Manchester, UK
| | - J W Mouland
- Centre for Biological Timing, Faculty of Biology, Medicine and Health, University of Manchester, Manchester, UK
| | - T M Brown
- Centre for Biological Timing, Faculty of Biology, Medicine and Health, University of Manchester, Manchester, UK.
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6
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Harris SC, Dunn FA. Asymmetric retinal direction tuning predicts optokinetic eye movements across stimulus conditions. eLife 2023; 12:e81780. [PMID: 36930180 PMCID: PMC10023158 DOI: 10.7554/elife.81780] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2022] [Accepted: 02/02/2023] [Indexed: 03/18/2023] Open
Abstract
Across species, the optokinetic reflex (OKR) stabilizes vision during self-motion. OKR occurs when ON direction-selective retinal ganglion cells (oDSGCs) detect slow, global image motion on the retina. How oDSGC activity is integrated centrally to generate behavior remains unknown. Here, we discover mechanisms that contribute to motion encoding in vertically tuned oDSGCs and leverage these findings to empirically define signal transformation between retinal output and vertical OKR behavior. We demonstrate that motion encoding in vertically tuned oDSGCs is contrast-sensitive and asymmetric for oDSGC types that prefer opposite directions. These phenomena arise from the interplay between spike threshold nonlinearities and differences in synaptic input weights, including shifts in the balance of excitation and inhibition. In behaving mice, these neurophysiological observations, along with a central subtraction of oDSGC outputs, accurately predict the trajectories of vertical OKR across stimulus conditions. Thus, asymmetric tuning across competing sensory channels can critically shape behavior.
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Affiliation(s)
- Scott C Harris
- Department of Ophthalmology, University of California, San FranciscoSan FranciscoUnited States
- Neuroscience Graduate Program, University of California, San FranciscoSan FranciscoUnited States
| | - Felice A Dunn
- Department of Ophthalmology, University of California, San FranciscoSan FranciscoUnited States
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7
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Durand S, Heller GR, Ramirez TK, Luviano JA, Williford A, Sullivan DT, Cahoon AJ, Farrell C, Groblewski PA, Bennett C, Siegle JH, Olsen SR. Acute head-fixed recordings in awake mice with multiple Neuropixels probes. Nat Protoc 2023; 18:424-457. [PMID: 36477710 DOI: 10.1038/s41596-022-00768-6] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2021] [Accepted: 08/09/2022] [Indexed: 12/12/2022]
Abstract
Multi-electrode arrays such as Neuropixels probes enable electrophysiological recordings from large populations of single neurons with high temporal resolution. By using such probes, the activity from functionally interacting, yet distinct, brain regions can be measured simultaneously by inserting multiple probes into the same subject. However, the use of multiple probes in small animals such as mice requires the removal of a sizable fraction of the skull, while also minimizing tissue damage and keeping the brain stable during the recordings. Here, we describe a step-by-step process designed to facilitate reliable recordings from up to six Neuropixels probes simultaneously in awake, head-fixed mice. The procedure involves four stages: the implantation of a headframe and a removable glass coverslip, the precise positioning of the Neuropixels probes at targeted points on the brain surface, the placement of a perforated plastic imaging window and the insertion of the probes into the brain of an awake mouse. The approach provides access to multiple brain regions and has been successfully applied across hundreds of mice. The procedure has been optimized for dense recordings from the mouse visual system, but it can be adapted for alternative recording configurations to target multiple probes in other brain areas. The protocol is suitable for users with experience in stereotaxic surgery in mice.
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Affiliation(s)
| | - Greggory R Heller
- Allen Institute, Seattle, WA, USA.,Department of Brain and Cognitive Sciences, Massachussetts Institute of Technology, Cambridge, MA, USA
| | - Tamina K Ramirez
- Allen Institute, Seattle, WA, USA.,Department of Neurobiology and Behavior, Columbia University, New York, NY, USA
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8
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Franke K, Willeke KF, Ponder K, Galdamez M, Zhou N, Muhammad T, Patel S, Froudarakis E, Reimer J, Sinz FH, Tolias AS. State-dependent pupil dilation rapidly shifts visual feature selectivity. Nature 2022; 610:128-134. [PMID: 36171291 PMCID: PMC10635574 DOI: 10.1038/s41586-022-05270-3] [Citation(s) in RCA: 26] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2021] [Accepted: 08/23/2022] [Indexed: 11/09/2022]
Abstract
To increase computational flexibility, the processing of sensory inputs changes with behavioural context. In the visual system, active behavioural states characterized by motor activity and pupil dilation1,2 enhance sensory responses, but typically leave the preferred stimuli of neurons unchanged2-9. Here we find that behavioural state also modulates stimulus selectivity in the mouse visual cortex in the context of coloured natural scenes. Using population imaging in behaving mice, pharmacology and deep neural network modelling, we identified a rapid shift in colour selectivity towards ultraviolet stimuli during an active behavioural state. This was exclusively caused by state-dependent pupil dilation, which resulted in a dynamic switch from rod to cone photoreceptors, thereby extending their role beyond night and day vision. The change in tuning facilitated the decoding of ethological stimuli, such as aerial predators against the twilight sky10. For decades, studies in neuroscience and cognitive science have used pupil dilation as an indirect measure of brain state. Our data suggest that, in addition, state-dependent pupil dilation itself tunes visual representations to behavioural demands by differentially recruiting rods and cones on fast timescales.
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Affiliation(s)
- Katrin Franke
- Institute for Ophthalmic Research, Tübingen University, Tübingen, Germany.
- Center for Integrative Neuroscience, Tübingen University, Tübingen, Germany.
- Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA.
- Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA.
| | - Konstantin F Willeke
- Institute for Bioinformatics and Medical Informatics, Tübingen University, Tübingen, Germany
- Department of Computer Science, Göttingen University, Göttingen, Germany
| | - Kayla Ponder
- Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
- Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
| | - Mario Galdamez
- Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
- Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
| | - Na Zhou
- Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
- Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
| | - Taliah Muhammad
- Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
- Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
| | - Saumil Patel
- Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
- Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
| | - Emmanouil Froudarakis
- Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
- Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
- Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology Hellas, Heraklion, Greece
| | - Jacob Reimer
- Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
- Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
| | - Fabian H Sinz
- Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
- Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
- Institute for Bioinformatics and Medical Informatics, Tübingen University, Tübingen, Germany
- Department of Computer Science, Göttingen University, Göttingen, Germany
| | - Andreas S Tolias
- Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
- Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
- Department of Electrical and Computer Engineering, Rice University, Houston, TX, USA
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9
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High-density electrode recordings reveal strong and specific connections between retinal ganglion cells and midbrain neurons. Nat Commun 2022; 13:5218. [PMID: 36064789 PMCID: PMC9445019 DOI: 10.1038/s41467-022-32775-2] [Citation(s) in RCA: 21] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2021] [Accepted: 08/16/2022] [Indexed: 11/29/2022] Open
Abstract
The superior colliculus is a midbrain structure that plays important roles in visually guided behaviors in mammals. Neurons in the superior colliculus receive inputs from retinal ganglion cells but how these inputs are integrated in vivo is unknown. Here, we discovered that high-density electrodes simultaneously capture the activity of retinal axons and their postsynaptic target neurons in the superior colliculus, in vivo. We show that retinal ganglion cell axons in the mouse provide a single cell precise representation of the retina as input to superior colliculus. This isomorphic mapping builds the scaffold for precise retinotopic wiring and functionally specific connection strength. Our methods are broadly applicable, which we demonstrate by recording retinal inputs in the optic tectum in zebra finches. We find common wiring rules in mice and zebra finches that provide a precise representation of the visual world encoded in retinal ganglion cells connections to neurons in retinorecipient areas. The superior colliculus receives visual information from retinal ganglion cells, but it remains unclear how this information is organized and integrated in vivo. Here the authors describe how high-density electrodes can simultaneously capture the activity of incoming axons and target neurons in the superior colliculus, and demonstrate isomorphic mapping and strong and specific connections in mice and zebrafinches.
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10
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Tangential high-density electrode insertions allow to simultaneously measure neuronal activity across an extended region of the visual field in mouse superior colliculus. J Neurosci Methods 2022; 376:109622. [PMID: 35525463 DOI: 10.1016/j.jneumeth.2022.109622] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2022] [Revised: 04/13/2022] [Accepted: 05/02/2022] [Indexed: 11/21/2022]
Abstract
BACKGROUND The superior colliculus (SC) is a midbrain structure that plays a central role in visual processing. Although we have learned a considerable amount about the function of single SC neurons, the way in which sensory information is represented and processed on the population level in awake behaving animals and across a large region of the retinotopic map is still largely unknown. Partially because the SC is anatomically located below the cortical sheet and the transverse sinus, which render the measure of neuronal activity from a large population of neurons in the SC technically difficult to perform. NEW METHOD To address this, we propose a tangential recording configuration using high-density electrode probes (Neuropixels) in mouse SC in vivo. This method permits a large number of recording sites (~200) inside the SC circuitry allowing to record from a large population of SC neurons along a vast area of retinotopic space. RESULTS This approach provides a unique opportunity to measure the activity of SC neuronal populations over up to ~2mm of SC tissue reporting for the first time the continuous receptive fields coverage of almost the entire SC retinotopy. Here we describe how to perform targeted tangential recordings along the anterior-posterior and the medio-lateral axis of the mouse SC in vivo in the upper visual layers. Furthermore, we describe how to combine this approach with optogenetic tools for cell-type identification on the population level. COMPARISON WITH EXISTING METHODS Vertical insertion has been a standard way to record visual responses in the SC. Inserting multi-shank probes vertically allows to cover a larger region of the SC but misses both the complete extent of the available retinotopy and the continuous measure allowed by the high density of recording sites on Neuropixels probes. CONCLUSION Altogether tangential insertions in the upper visual layers of the mouse SC using Neuropixels permit for the first time to access a majority of the retinotopically organized visual representation of the world at an unprecedented precision.
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11
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Abstract
Retinal circuits transform the pixel representation of photoreceptors into the feature representations of ganglion cells, whose axons transmit these representations to the brain. Functional, morphological, and transcriptomic surveys have identified more than 40 retinal ganglion cell (RGC) types in mice. RGCs extract features of varying complexity; some simply signal local differences in brightness (i.e., luminance contrast), whereas others detect specific motion trajectories. To understand the retina, we need to know how retinal circuits give rise to the diverse RGC feature representations. A catalog of the RGC feature set, in turn, is fundamental to understanding visual processing in the brain. Anterograde tracing indicates that RGCs innervate more than 50 areas in the mouse brain. Current maps connecting RGC types to brain areas are rudimentary, as is our understanding of how retinal signals are transformed downstream to guide behavior. In this article, I review the feature selectivities of mouse RGCs, how they arise, and how they are utilized downstream. Not only is knowledge of the behavioral purpose of RGC signals critical for understanding the retinal contributions to vision; it can also guide us to the most relevant areas of visual feature space. Expected final online publication date for the Annual Review of Vision Science, Volume 8 is September 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
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Affiliation(s)
- Daniel Kerschensteiner
- John F. Hardesty, MD, Department of Ophthalmology and Visual Sciences; Department of Neuroscience; Department of Biomedical Engineering; and Hope Center for Neurological Disorders, Washington University School of Medicine, Saint Louis, Missouri, USA;
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12
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Ichinose T, Habib S. ON and OFF Signaling Pathways in the Retina and the Visual System. FRONTIERS IN OPHTHALMOLOGY 2022; 2:989002. [PMID: 36926308 PMCID: PMC10016624 DOI: 10.3389/fopht.2022.989002] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
Visual processing starts at the retina of the eye, and signals are then transferred primarily to the visual cortex and the tectum. In the retina, multiple neural networks encode different aspects of visual input, such as color and motion. Subsequently, multiple neural streams in parallel convey unique aspects of visual information to cortical and subcortical regions. Bipolar cells, which are the second order neurons of the retina, separate visual signals evoked by light and dark contrasts and encode them to ON and OFF pathways, respectively. The interplay between ON and OFF neural signals is the foundation for visual processing for object contrast which underlies higher order stimulus processing. ON and OFF pathways have been classically thought to signal in a mirror-symmetric manner. However, while these two pathways contribute synergistically to visual perception in some instances, they have pronounced asymmetries suggesting independent operation in other cases. In this review, we summarize the role of the ON-OFF dichotomy in visual signaling, aiming to contribute to the understanding of visual recognition.
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Affiliation(s)
- Tomomi Ichinose
- Department of Ophthalmology, Visual and Anatomical Sciences, Wayne State University School of Medicine, Detroit, Michigan, USA
- Correspondence: Tomomi Ichinose, MD, PhD,
| | - Samar Habib
- Department of Ophthalmology, Visual and Anatomical Sciences, Wayne State University School of Medicine, Detroit, Michigan, USA
- Department of Medical Parasitology, Mansoura Faculty of Medicine, Mansoura University, Mansoura, Egypt
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Miralles de Imperial-Ollero JA, Gallego-Ortega A, Ortín-Martínez A, Villegas-Pérez MP, Valiente-Soriano FJ, Vidal-Sanz M. Animal Models of LED-Induced Phototoxicity. Short- and Long-Term In Vivo and Ex Vivo Retinal Alterations. Life (Basel) 2021; 11:life11111137. [PMID: 34833013 PMCID: PMC8617611 DOI: 10.3390/life11111137] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2021] [Revised: 10/20/2021] [Accepted: 10/21/2021] [Indexed: 12/26/2022] Open
Abstract
Phototoxicity animal models have been largely studied due to their degenerative communalities with human pathologies, e.g., age-related macular degeneration (AMD). Studies have documented not only the effects of white light exposure, but also other wavelengths using LEDs, such as blue or green light. Recently, a blue LED-induced phototoxicity (LIP) model has been developed that causes focal damage in the outer layers of the superior-temporal region of the retina in rodents. In vivo studies described a progressive reduction in retinal thickness that affected the most extensively the photoreceptor layer. Functionally, a transient reduction in a- and b-wave amplitude of the ERG response was observed. Ex vivo studies showed a progressive reduction of cones and an involvement of retinal pigment epithelium cells in the area of the lesion and, in parallel, an activation of microglial cells that perfectly circumscribe the damage in the outer retinal layer. The use of neuroprotective strategies such as intravitreal administration of trophic factors, e.g., basic fibroblast growth factor (bFGF), brain-derived neurotrophic factor (BDNF), ciliary neurotrophic factor (CNTF) or pigment epithelium-derived factor (PEDF) and topical administration of the selective alpha-2 agonist (Brimonidine) have demonstrated to increase the survival of the cone population after LIP.
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Affiliation(s)
- Juan A. Miralles de Imperial-Ollero
- Departamento de Oftalmología, Universidad de Murcia e Instituto Murciano de Investigación Biosanitaria (IMIB) Virgen de la Arrixaca, Campus de CC de la Salud, El Palmar, 30120 Murcia, Spain; (J.A.M.d.I.-O.); (A.G.-O.); (M.P.V.-P.)
| | - Alejandro Gallego-Ortega
- Departamento de Oftalmología, Universidad de Murcia e Instituto Murciano de Investigación Biosanitaria (IMIB) Virgen de la Arrixaca, Campus de CC de la Salud, El Palmar, 30120 Murcia, Spain; (J.A.M.d.I.-O.); (A.G.-O.); (M.P.V.-P.)
| | - Arturo Ortín-Martínez
- Donald K. Johnson Eye Institute, Krembil Research Institute, University Health Network, Toronto, ON M5T 2S8, Canada;
| | - María Paz Villegas-Pérez
- Departamento de Oftalmología, Universidad de Murcia e Instituto Murciano de Investigación Biosanitaria (IMIB) Virgen de la Arrixaca, Campus de CC de la Salud, El Palmar, 30120 Murcia, Spain; (J.A.M.d.I.-O.); (A.G.-O.); (M.P.V.-P.)
| | - Francisco J. Valiente-Soriano
- Departamento de Oftalmología, Universidad de Murcia e Instituto Murciano de Investigación Biosanitaria (IMIB) Virgen de la Arrixaca, Campus de CC de la Salud, El Palmar, 30120 Murcia, Spain; (J.A.M.d.I.-O.); (A.G.-O.); (M.P.V.-P.)
- Correspondence: (F.J.V.-S.); (M.V.-S.); Tel.: +34-868-88-4503 (F.J.V-S.); +34-868-88-4330 (M.V.-S.)
| | - Manuel Vidal-Sanz
- Departamento de Oftalmología, Universidad de Murcia e Instituto Murciano de Investigación Biosanitaria (IMIB) Virgen de la Arrixaca, Campus de CC de la Salud, El Palmar, 30120 Murcia, Spain; (J.A.M.d.I.-O.); (A.G.-O.); (M.P.V.-P.)
- Correspondence: (F.J.V.-S.); (M.V.-S.); Tel.: +34-868-88-4503 (F.J.V-S.); +34-868-88-4330 (M.V.-S.)
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14
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Miralles de Imperial-Ollero JA, Gallego-Ortega A, Norte-Muñoz M, Di Pierdomenico J, Valiente-Soriano FJ, Vidal-Sanz M. An in vivo model of focal light emitting diode-induced cone photoreceptor phototoxicity in adult pigmented mice: Protection with bFGF. Exp Eye Res 2021; 211:108746. [PMID: 34450185 DOI: 10.1016/j.exer.2021.108746] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2021] [Revised: 08/18/2021] [Accepted: 08/20/2021] [Indexed: 12/13/2022]
Abstract
PURPOSE To develop a model of focal injury by blue light-emitting diode (LED)-induced phototoxicity (LIP) in pigmented mouse retinas and to study the effects on cone, Iba-1+ cells and retinal pigment epithelium (RPE) cell populations after administration of basic fibroblast growth factor (bFGF) and minocycline, alone or combined. METHODS In anesthetized dark-adapted adult female pigmented C57BL/6 mice, left pupils were dilated and the eye exposed to LIP (500 lux, 45 s). The retina was monitored longitudinally in vivo with SD-OCT for 7 days (d). Ex vivo, the effects of LIP and its protection with bFGF (0.5 μg) administered alone or combined with minocycline (45 mg/kg) were studied in immunolabeled arrestin-cone outer segments (a+OS) and quantified within a predetermined fixed-size circular area (PCA) centered on the lesion in flattened retinas at 1, 3, 5 or 7d. Moreover, Iba-1+ cells and RPE cell morphology were analysed with Iba-1 and ZO-1 antibodies, respectively. RESULTS LIP caused a focal lesion within the superior-temporal retina with retinal thinning, particularly the outer retinal layers (116.5 ± 2.9 μm to 36.8 ± 6.3 μm at 7d), and with progressive diminution of a+OS within the PCA reaching minimum values at 7d (6218 ± 342 to 3966 ± 311). Administration of bFGF alone (4519 ± 320) or in combination with minocycline (4882 ± 446) had a significant effect on a+OS survival at 7d and Iba-1+ cell activation was attenuated in the groups treated with minocycline. In parallel, the RPE cell integrity was progressively altered after LIP and administration of neuroprotective components had no restorative effect at 7d. CONCLUSIONS LIP resulted in progressive outer retinal damage affecting the OS cone population and RPE. Administration of bFGF increased a+OS survival but did not prevent RPE deterioration.
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Affiliation(s)
- Juan A Miralles de Imperial-Ollero
- Departamento de Oftalmología, Universidad de Murcia e Instituto Murciano de Investigación Biosanitaria (IMIB) Virgen de la Arrixaca. Campus de CC de la Salud, 30120, El Palmar, Murcia, Spain
| | - Alejandro Gallego-Ortega
- Departamento de Oftalmología, Universidad de Murcia e Instituto Murciano de Investigación Biosanitaria (IMIB) Virgen de la Arrixaca. Campus de CC de la Salud, 30120, El Palmar, Murcia, Spain
| | - María Norte-Muñoz
- Departamento de Oftalmología, Universidad de Murcia e Instituto Murciano de Investigación Biosanitaria (IMIB) Virgen de la Arrixaca. Campus de CC de la Salud, 30120, El Palmar, Murcia, Spain
| | - Johnny Di Pierdomenico
- Departamento de Oftalmología, Universidad de Murcia e Instituto Murciano de Investigación Biosanitaria (IMIB) Virgen de la Arrixaca. Campus de CC de la Salud, 30120, El Palmar, Murcia, Spain
| | - Francisco J Valiente-Soriano
- Departamento de Oftalmología, Universidad de Murcia e Instituto Murciano de Investigación Biosanitaria (IMIB) Virgen de la Arrixaca. Campus de CC de la Salud, 30120, El Palmar, Murcia, Spain.
| | - Manuel Vidal-Sanz
- Departamento de Oftalmología, Universidad de Murcia e Instituto Murciano de Investigación Biosanitaria (IMIB) Virgen de la Arrixaca. Campus de CC de la Salud, 30120, El Palmar, Murcia, Spain.
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15
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Mouland JW, Pienaar A, Williams C, Watson AJ, Lucas RJ, Brown TM. Extensive cone-dependent spectral opponency within a discrete zone of the lateral geniculate nucleus supporting mouse color vision. Curr Biol 2021; 31:3391-3400.e4. [PMID: 34111401 PMCID: PMC8360768 DOI: 10.1016/j.cub.2021.05.024] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2020] [Revised: 04/23/2021] [Accepted: 05/13/2021] [Indexed: 12/15/2022]
Abstract
Color vision, originating with opponent processing of spectrally distinct photoreceptor signals, plays important roles in animal behavior.1-4 Surprisingly, however, comparatively little is understood about color processing in the brain, including in widely used laboratory mammals such as mice. The retinal gradient in S- and M-cone opsin (co-)expression has traditionally been considered an impediment to mouse color vision.5-8 However, recent data indicate that mice exhibit robust chromatic discrimination within the central-upper visual field.9 Retinal color opponency has been reported to emerge from superimposing inhibitory surround receptive fields on the cone opsin expression gradient, and by introducing opponent rod signals in retinal regions with sparse M-cone opsin expression.10-13 The relative importance of these proposed mechanisms in determining the properties of neurons at higher visual processing stages remains unknown. We address these questions using multielectrode recordings from the lateral geniculate nucleus (LGN) in mice with altered M-cone spectral sensitivity (Opn1mwR) and multispectral stimuli that allow selective modulation of signaling by individual opsin classes. Remarkably, we find many (∼25%) LGN cells are color opponent, that such cells are localized to a distinct medial LGN zone and that their properties cannot simply be explained by the proposed retinal opponent mechanisms. Opponent responses in LGN can be driven solely by cones, independent of cone-opsin expression gradients and rod input, with many cells exhibiting spatially congruent antagonistic receptive fields. Our data therefore suggest previously unidentified mechanisms may support extensive and sophisticated color processing in the mouse LGN.
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Affiliation(s)
- Josh W Mouland
- Centre for Biological Timing, Faculty of Biology, Medicine and Health, University of Manchester, Manchester M13 9PT, UK
| | - Abigail Pienaar
- Centre for Biological Timing, Faculty of Biology, Medicine and Health, University of Manchester, Manchester M13 9PT, UK
| | - Christopher Williams
- Centre for Biological Timing, Faculty of Biology, Medicine and Health, University of Manchester, Manchester M13 9PT, UK
| | - Alex J Watson
- Centre for Biological Timing, Faculty of Biology, Medicine and Health, University of Manchester, Manchester M13 9PT, UK
| | - Robert J Lucas
- Centre for Biological Timing, Faculty of Biology, Medicine and Health, University of Manchester, Manchester M13 9PT, UK
| | - Timothy M Brown
- Centre for Biological Timing, Faculty of Biology, Medicine and Health, University of Manchester, Manchester M13 9PT, UK.
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16
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Jeczmien-Lazur JS, Orlowska-Feuer P, Kustron A, Lewandowski MH. Short Wavelengths Contribution to Light-induced Responses and Irradiance Coding in the Rat Dorsal Lateral Geniculate Nucleus - An In vivo Electrophysiological Approach. Neuroscience 2021; 468:220-234. [PMID: 34146632 DOI: 10.1016/j.neuroscience.2021.06.016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2021] [Revised: 06/07/2021] [Accepted: 06/10/2021] [Indexed: 10/21/2022]
Abstract
The dorsal lateral geniculate nucleus (dLGN) is the main neuronal station en route to higher visual areas. It receives information about environmental light from retinal photoreceptors whose sensitivity peaks are distributed across a visible spectrum. Here, using electrophysiological multichannel recordings in vivo combined with different light stimulations, we investigated short wavelength contribution to the dLGN responses to light and irradiance coding. The results showed that the majority of dLGN cells responded evenly to almost all wavelengths from the 340 to 490 nm spectrum; however, some cells representing extremes of unimodal distribution of Blue-UV index were specialised in the reception of blue or UV light. Moreover, by using alternate yellow and monochromatic light stimuli from blue - UV range, we also assessed the relative spectral contribution to rat dLGN responses to light. Finally, we observed no clear changes in the irradiance coding property of short wavelength-deficient light stimuli, however we noticed a distortion of the coding curves manifested by a significant drop in measure of fit after using short wavelength blocking filter. In conclusion, our data provide the first electrophysiological report on dLGN short wavelength-induced responses under changing light conditions and suggest the presence of colour opponent cells in the rat dLGN.
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Affiliation(s)
- Jagoda Stanislawa Jeczmien-Lazur
- Department of Neurophysiology and Chronobiology, Institute of Zoology and Biomedical Research, Jagiellonian University in Krakow, Krakow, Poland; Malopolska Centre of Biotechnology (MCB), Jagiellonian University in Krakow, Krakow, Poland
| | - Patrycja Orlowska-Feuer
- Department of Neurophysiology and Chronobiology, Institute of Zoology and Biomedical Research, Jagiellonian University in Krakow, Krakow, Poland; Malopolska Centre of Biotechnology (MCB), Jagiellonian University in Krakow, Krakow, Poland.
| | - Anna Kustron
- Department of Neurophysiology and Chronobiology, Institute of Zoology and Biomedical Research, Jagiellonian University in Krakow, Krakow, Poland
| | - Marian Henryk Lewandowski
- Department of Neurophysiology and Chronobiology, Institute of Zoology and Biomedical Research, Jagiellonian University in Krakow, Krakow, Poland.
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17
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Rhim I, Coello-Reyes G, Nauhaus I. Variations in photoreceptor throughput to mouse visual cortex and the unique effects on tuning. Sci Rep 2021; 11:11937. [PMID: 34099749 PMCID: PMC8184960 DOI: 10.1038/s41598-021-90650-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2021] [Accepted: 05/12/2021] [Indexed: 11/24/2022] Open
Abstract
Visual input to primary visual cortex (V1) depends on highly adaptive filtering in the retina. In turn, isolation of V1 computations requires experimental control of retinal adaptation to infer its spatio-temporal-chromatic output. Here, we measure the balance of input to mouse V1, in the anesthetized setup, from the three main photoreceptor opsins-M-opsin, S-opsin, and rhodopsin-as a function of two stimulus dimensions. The first dimension is the level of light adaptation within the mesopic range, which governs the balance of rod and cone inputs to cortex. The second stimulus dimension is retinotopic position, which governs the balance of S- and M-cone opsin input due to the opsin expression gradient in the retina. The fitted model predicts opsin input under arbitrary lighting environments, which provides a much-needed handle on in-vivo studies of the mouse visual system. We use it here to reveal that V1 is rod-mediated in common laboratory settings yet cone-mediated in natural daylight. Next, we compare functional properties of V1 under rod and cone-mediated inputs. The results show that cone-mediated V1 responds to 2.5-fold higher temporal frequencies than rod-mediated V1. Furthermore, cone-mediated V1 has smaller receptive fields, yet similar spatial frequency tuning. V1 responses in rod-deficient (Gnat1-/-) mice confirm that the effects are due to differences in photoreceptor opsin contribution.
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Affiliation(s)
- I Rhim
- Department of Psychology, University of Texas At Austin, 108 E. Dean Keeton, Austin, TX, 78712, USA
- Center for Perceptual Systems, University of Texas At Austin, 108 E. Dean Keeton, Austin, TX, 78712, USA
| | - G Coello-Reyes
- Department of Psychology, University of Texas At Austin, 108 E. Dean Keeton, Austin, TX, 78712, USA
- Center for Perceptual Systems, University of Texas At Austin, 108 E. Dean Keeton, Austin, TX, 78712, USA
| | - I Nauhaus
- Department of Psychology, University of Texas At Austin, 108 E. Dean Keeton, Austin, TX, 78712, USA.
- Department of Neuroscience, University of Texas At Austin, 1 University Station, Stop C7000, Austin, TX, 78712, USA.
- Center for Perceptual Systems, University of Texas At Austin, 108 E. Dean Keeton, Austin, TX, 78712, USA.
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18
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Khani MH, Gollisch T. Linear and nonlinear chromatic integration in the mouse retina. Nat Commun 2021; 12:1900. [PMID: 33772000 PMCID: PMC7997992 DOI: 10.1038/s41467-021-22042-1] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2020] [Accepted: 02/23/2021] [Indexed: 11/09/2022] Open
Abstract
The computations performed by a neural circuit depend on how it integrates its input signals into an output of its own. In the retina, ganglion cells integrate visual information over time, space, and chromatic channels. Unlike the former two, chromatic integration is largely unexplored. Analogous to classical studies of spatial integration, we here study chromatic integration in mouse retina by identifying chromatic stimuli for which activation from the green or UV color channel is maximally balanced by deactivation through the other color channel. This reveals nonlinear chromatic integration in subsets of On, Off, and On-Off ganglion cells. Unlike the latter two, nonlinear On cells display response suppression rather than activation under balanced chromatic stimulation. Furthermore, nonlinear chromatic integration occurs independently of nonlinear spatial integration, depends on contributions from the rod pathway and on surround inhibition, and may provide information about chromatic boundaries, such as the skyline in natural scenes.
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Affiliation(s)
- Mohammad Hossein Khani
- Department of Ophthalmology, University Medical Center Göttingen, Göttingen, Germany.
- Bernstein Center for Computational Neuroscience, Göttingen, Germany.
- International Max Planck Research School for Neuroscience, Göttingen, Germany.
| | - Tim Gollisch
- Department of Ophthalmology, University Medical Center Göttingen, Göttingen, Germany.
- Bernstein Center for Computational Neuroscience, Göttingen, Germany.
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19
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Aranda ML, Schmidt TM. Diversity of intrinsically photosensitive retinal ganglion cells: circuits and functions. Cell Mol Life Sci 2021; 78:889-907. [PMID: 32965515 PMCID: PMC8650628 DOI: 10.1007/s00018-020-03641-5] [Citation(s) in RCA: 75] [Impact Index Per Article: 25.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2020] [Revised: 08/10/2020] [Accepted: 09/03/2020] [Indexed: 12/25/2022]
Abstract
The melanopsin-expressing, intrinsically photosensitive retinal ganglion cells (ipRGCs) are a relatively recently discovered class of atypical ganglion cell photoreceptor. These ipRGCs are a morphologically and physiologically heterogeneous population that project widely throughout the brain and mediate a wide array of visual functions ranging from photoentrainment of our circadian rhythms, to driving the pupillary light reflex to improve visual function, to modulating our mood, alertness, learning, sleep/wakefulness, regulation of body temperature, and even our visual perception. The presence of melanopsin as a unique molecular signature of ipRGCs has allowed for the development of a vast array of molecular and genetic tools to study ipRGC circuits. Given the emerging complexity of this system, this review will provide an overview of the genetic tools and methods used to study ipRGCs, how these tools have been used to dissect their role in a variety of visual circuits and behaviors in mice, and identify important directions for future study.
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Affiliation(s)
- Marcos L Aranda
- Department of Neurobiology, Northwestern University, Evanston, IL, USA
| | - Tiffany M Schmidt
- Department of Neurobiology, Northwestern University, Evanston, IL, USA.
- Department of Ophthalmology, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.
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20
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Orlowska-Feuer P, Smyk MK, Alwani A, Lewandowski MH. Neuronal Responses to Short Wavelength Light Deficiency in the Rat Subcortical Visual System. Front Neurosci 2021; 14:615181. [PMID: 33488355 PMCID: PMC7815651 DOI: 10.3389/fnins.2020.615181] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2020] [Accepted: 12/08/2020] [Indexed: 12/26/2022] Open
Abstract
The amount and spectral composition of light changes considerably during the day, with dawn and dusk being the most crucial moments when light is within the mesopic range and short wavelength enriched. It was recently shown that animals use both cues to adjust their internal circadian clock, thereby their behavior and physiology, with the solar cycle. The role of blue light in circadian processes and neuronal responses is well established, however, an unanswered question remains: how do changes in the spectral composition of light (short wavelengths blocking) influence neuronal activity? In this study we addressed this question by performing electrophysiological recordings in image (dorsal lateral geniculate nucleus; dLGN) and non-image (the olivary pretectal nucleus; OPN, the suprachiasmatic nucleus; SCN) visual structures to determine neuronal responses to spectrally varied light stimuli. We found that removing short-wavelength from the polychromatic light (cut off at 525 nm) attenuates the most transient ON and sustained cells in the dLGN and OPN, respectively. Moreover, we compared the ability of different types of sustained OPN neurons (either changing or not their response profile to filtered polychromatic light) to irradiance coding, and show that both groups achieve it with equal efficacy. On the other hand, even very dim monochromatic UV light (360 nm; log 9.95 photons/cm2/s) evokes neuronal responses in the dLGN and SCN. To our knowledge, this is the first electrophysiological experiment supporting previous behavioral findings showing visual and circadian functions disruptions under short wavelength blocking environment. The current results confirm that neuronal activity in response to polychromatic light in retinorecipient structures is affected by removing short wavelengths, however, with type and structure – specific action. Moreover, they show that rats are sensitive to even very dim UV light.
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Affiliation(s)
- Patrycja Orlowska-Feuer
- Malopolska Centre of Biotechnology (MCB), Jagiellonian University in Kraków, Kraków, Poland.,Department of Neurophysiology and Chronobiology, Jagiellonian University in Kraków, Kraków, Poland
| | - Magdalena Kinga Smyk
- Malopolska Centre of Biotechnology (MCB), Jagiellonian University in Kraków, Kraków, Poland.,Department of Neurophysiology and Chronobiology, Jagiellonian University in Kraków, Kraków, Poland
| | - Anna Alwani
- Department of Neurophysiology and Chronobiology, Jagiellonian University in Kraków, Kraków, Poland
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21
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Abstract
A retina completely devoid of topographic variations would be homogenous, encoding any given feature uniformly across the visual field. In a naive view, such homogeneity would appear advantageous. However, it is now clear that retinal topographic variations exist across mammalian species in a variety of forms and patterns. We briefly review some of the more established topographic variations in retinas of different mammalian species and focus on the recent discovery that cells belonging to a single neuronal subtype may exhibit distinct topographic variations in distribution, morphology, and even function. We concentrate on the mouse retina-originally viewed as homogenous-in which genetic labeling of distinct neuronal subtypes and other advanced techniques have revealed unexpected anatomical and physiological topographic variations. Notably, different subtypes reveal different patterns of nonuniformity, which may even be opposite or orthogonal to one another. These topographic variations in the encoding of visual space should be considered when studying visual processing in the retina and beyond.
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Affiliation(s)
- Alina Sophie Heukamp
- Department of Neurobiology, Weizmann Institute of Science, Rehovot 7610001, Israel; , ,
| | - Rebekah Anne Warwick
- Department of Neurobiology, Weizmann Institute of Science, Rehovot 7610001, Israel; , ,
| | - Michal Rivlin-Etzion
- Department of Neurobiology, Weizmann Institute of Science, Rehovot 7610001, Israel; , ,
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22
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Sonoda T, Okabe Y, Schmidt TM. Overlapping morphological and functional properties between M4 and M5 intrinsically photosensitive retinal ganglion cells. J Comp Neurol 2020; 528:1028-1040. [PMID: 31691279 PMCID: PMC7007370 DOI: 10.1002/cne.24806] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2019] [Revised: 10/24/2019] [Accepted: 10/30/2019] [Indexed: 02/03/2023]
Abstract
Multiple retinal ganglion cell (RGC) types in the mouse retina mediate pattern vision by responding to specific features of the visual scene. The M4 and M5 melanopsin-expressing, intrinsically photosensitive retinal ganglion cell (ipRGC) subtypes are two RGC types that are thought to play major roles in pattern vision. The M4 ipRGCs overlap in population with ON-alpha RGCs, while M5 ipRGCs were recently reported to exhibit opponent responses to different wavelengths of light (color opponency). Despite their seemingly distinct roles in visual processing, previous reports have suggested that these two populations may exhibit overlap in their morphological and functional properties, which calls into question whether these are in fact distinct RGC types. Here, we show that M4 and M5 ipRGCs are distinct morphological classes of ipRGCs, but they cannot be exclusively differentiated based on color opponency and dendritic morphology as previously reported. Instead, we find that M4 and M5 ipRGCs can only be distinguished based on soma size and the number of dendritic branch points in combination with SMI-32 immunoreactivity. These results have important implications for clearly defining RGC types and their roles in visual behavior.
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Affiliation(s)
- Takuma Sonoda
- Department of Neurobiology, Northwestern University, Evanston, IL, USA
- Northwestern University Interdepartmental Neuroscience Program, Northwestern University, Chicago, IL, USA
| | - Yudai Okabe
- Department of Neurobiology, Northwestern University, Evanston, IL, USA
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23
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Sondereker KB, Stabio ME, Renna JM. Crosstalk: The diversity of melanopsin ganglion cell types has begun to challenge the canonical divide between image-forming and non-image-forming vision. J Comp Neurol 2020; 528:2044-2067. [PMID: 32003463 DOI: 10.1002/cne.24873] [Citation(s) in RCA: 41] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2019] [Revised: 01/22/2020] [Accepted: 01/22/2020] [Indexed: 12/15/2022]
Abstract
Melanopsin ganglion cells have defied convention since their discovery almost 20 years ago. In the years following, many types of these intrinsically photosensitive retinal ganglion cells (ipRGCs) have emerged. In the mouse retina, there are currently six known types (M1-M6) of melanopsin ganglion cells, each with unique morphology, mosaics, connections, physiology, projections, and functions. While melanopsin-expressing cells are usually associated with behaviors like circadian photoentrainment and the pupillary light reflex, the characterization of multiple types has demonstrated a reach that may extend far beyond non-image-forming vision. In fact, studies have shown that individual types of melanopsin ganglion cells have the potential to impact image-forming functions like contrast sensitivity and color opponency. Thus, the goal of this review is to summarize the morphological and functional aspects of the six known types of melanopsin ganglion cells in the mouse retina and to highlight their respective roles in non-image-forming and image-forming vision. Although many melanopsin ganglion cell types do project to image-forming brain targets, it is important to note that this is only the first step in determining their influence on image-forming vision. Even so, the visual system has canonically been divided into these two functional realms and melanopsin ganglion cells have begun to challenge the boundary between them, providing an overlap of visual information that is complementary rather than redundant. Further studies on these ganglion cell photoreceptors will no doubt continue to illustrate an ever-expanding role for melanopsin ganglion cells in image-forming vision.
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Affiliation(s)
| | - Maureen E Stabio
- Department of Cell & Developmental Biology, University of Colorado School of Medicine, Aurora, Colorado
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24
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Katzner S, Born G, Busse L. V1 microcircuits underlying mouse visual behavior. Curr Opin Neurobiol 2019; 58:191-198. [PMID: 31585332 DOI: 10.1016/j.conb.2019.09.006] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2019] [Revised: 08/12/2019] [Accepted: 09/06/2019] [Indexed: 11/29/2022]
Abstract
Visual behavior is based on the concerted activity of neurons in visual areas, where sensory signals are integrated with top-down information. In the past decade, the advent of new tools, such as functional imaging of populations of identified single neurons, high-density electrophysiology, virus-assisted circuit mapping, and precisely timed, cell-type specific manipulations, has advanced our understanding of the neuronal microcircuits underlying visual behavior. Studies in head-fixed mice, where such tools can routinely be applied, begin to provide new insights into the neural code of primary visual cortex (V1) underlying visual perception, and the micro-circuits of attention, predictive processing, and learning.
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Affiliation(s)
- Steffen Katzner
- Division of Neurobiology, Department Biology II, LMU Munich, 82151 Munich, Germany
| | - Gregory Born
- Division of Neurobiology, Department Biology II, LMU Munich, 82151 Munich, Germany; Graduate School of Systemic Neuroscience (GSN), LMU Munich, 82151 Munich, Germany
| | - Laura Busse
- Division of Neurobiology, Department Biology II, LMU Munich, 82151 Munich, Germany; Bernstein Center for Computational Neuroscience, 82151 Munich, Germany.
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25
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Franke K, Maia Chagas A, Zhao Z, Zimmermann MJY, Bartel P, Qiu Y, Szatko KP, Baden T, Euler T. An arbitrary-spectrum spatial visual stimulator for vision research. eLife 2019; 8:e48779. [PMID: 31545172 PMCID: PMC6783264 DOI: 10.7554/elife.48779] [Citation(s) in RCA: 35] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2019] [Accepted: 09/20/2019] [Indexed: 01/05/2023] Open
Abstract
Visual neuroscientists require accurate control of visual stimulation. However, few stimulator solutions simultaneously offer high spatio-temporal resolution and free control over the spectra of the light sources, because they rely on off-the-shelf technology developed for human trichromatic vision. Importantly, consumer displays fail to drive UV-shifted short wavelength-sensitive photoreceptors, which strongly contribute to visual behaviour in many animals, including mice, zebrafish and fruit flies. Moreover, many non-mammalian species feature more than three spectral photoreceptor types. Here, we present a flexible, spatial visual stimulator with up to six arbitrary spectrum chromatic channels. It combines a standard digital light processing engine with open source hard- and software that can be easily adapted to the experimentalist's needs. We demonstrate the capability of this general visual stimulator experimentally in the in vitro mouse retinal whole-mount and the in vivo zebrafish. With this work, we intend to start a community effort of sharing and developing a common stimulator design for vision research.
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Affiliation(s)
- Katrin Franke
- Institute for Ophthalmic ResearchUniversity of TübingenTübingenGermany
- Bernstein Center for Computational NeuroscienceUniversity of TübingenTübingenGermany
| | - André Maia Chagas
- Institute for Ophthalmic ResearchUniversity of TübingenTübingenGermany
- Center for Integrative NeuroscienceUniversity of TübingenTübingenGermany
- Sussex Neuroscience, School of Life SciencesUniversity of SussexFalmerUnited Kingdom
| | - Zhijian Zhao
- Institute for Ophthalmic ResearchUniversity of TübingenTübingenGermany
- Center for Integrative NeuroscienceUniversity of TübingenTübingenGermany
| | - Maxime JY Zimmermann
- Sussex Neuroscience, School of Life SciencesUniversity of SussexFalmerUnited Kingdom
| | - Philipp Bartel
- Sussex Neuroscience, School of Life SciencesUniversity of SussexFalmerUnited Kingdom
| | - Yongrong Qiu
- Institute for Ophthalmic ResearchUniversity of TübingenTübingenGermany
- Center for Integrative NeuroscienceUniversity of TübingenTübingenGermany
| | - Klaudia P Szatko
- Institute for Ophthalmic ResearchUniversity of TübingenTübingenGermany
- Bernstein Center for Computational NeuroscienceUniversity of TübingenTübingenGermany
| | - Tom Baden
- Institute for Ophthalmic ResearchUniversity of TübingenTübingenGermany
- Sussex Neuroscience, School of Life SciencesUniversity of SussexFalmerUnited Kingdom
| | - Thomas Euler
- Institute for Ophthalmic ResearchUniversity of TübingenTübingenGermany
- Bernstein Center for Computational NeuroscienceUniversity of TübingenTübingenGermany
- Center for Integrative NeuroscienceUniversity of TübingenTübingenGermany
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26
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Guido W. Development, form, and function of the mouse visual thalamus. J Neurophysiol 2018; 120:211-225. [PMID: 29641300 PMCID: PMC6093956 DOI: 10.1152/jn.00651.2017] [Citation(s) in RCA: 55] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2017] [Revised: 04/04/2018] [Accepted: 04/04/2018] [Indexed: 12/16/2022] Open
Abstract
The dorsal lateral geniculate nucleus (dLGN) of the thalamus is the exclusive relay of retinal information en route to the visual cortex. Although much of our understanding about dLGN comes from studies done in higher mammals, such as the cat and primate, the mouse as a model organism has moved to the forefront as a tractable experimental platform to examine cell type-specific relations. This review highlights our current knowledge about the development, structure, and function of the mouse dLGN.
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Affiliation(s)
- William Guido
- Department of Anatomical Sciences and Neurobiology, University of Louisville School of Medicine , Louisville, Kentucky
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27
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Zhang Z, Cui L, Shi X, Tian X, Wang D, Gu C, Chen E, Cheng X, Xu Y, Hu Y, Zhang J, Zhou L, Fong HH, Ma P, Jiang G, Sun X, Zhang B, Peng H. Textile Display for Electronic and Brain-Interfaced Communications. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2018; 30:e1800323. [PMID: 29572973 DOI: 10.1002/adma.201800323] [Citation(s) in RCA: 70] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2018] [Indexed: 05/24/2023]
Abstract
Textile displays are poised to revolutionize current electronic devices, and reshape the future of electronics and related fields such as biomedicine and soft robotics. However, they remain unavailable due to the difficulty of directly constructing electroluminescent devices onto the textile-like substrate to really display desired programmable patterns. Here, a novel textile display is developed from continuous electroluminescent fibers made by a one-step extrusion process. The resulting displaying textile is flexible, stretchable, three-dimensionally twistable, conformable to arbitrarily curved skins, and breathable, and can dynamically display a series of desired patterns, making it useful for bioinspired electronics, soft robotics, and electroluminescent skins, among other applications. It is demonstrated that these displaying textiles can also communicate with a computer and mouse brain for smart display and camouflage applications. This work may open up a new direction for the integration of wearable electroluminescent devices with the human body, providing new and promising communication platforms.
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Affiliation(s)
- Zhitao Zhang
- State Key Laboratory of Molecular Engineering of Polymers, Department of Macromolecular Science, and Laboratory of Advanced Materials, Fudan University, Shanghai, 200438, China
| | - Liyuan Cui
- State Key Laboratory of Medical Neurobiology, Institute of Brain Science, Department of Ophthalmology, Zhongshan Hospital, Fudan University, Shanghai, 200032, China
| | - Xiang Shi
- State Key Laboratory of Molecular Engineering of Polymers, Department of Macromolecular Science, and Laboratory of Advanced Materials, Fudan University, Shanghai, 200438, China
| | - Xiaochaoran Tian
- State Key Laboratory of Surface Physics and Key Laboratory of Micro and Nano Photonic Structures (Ministry of Education), Fudan University, Shanghai, 200433, China
| | - Dongping Wang
- Department of Electronic Engineering, Shanghai Jiao Tong University, Shanghai, 200240, China
- Department of Chemistry, Tianjin University, Tianjin, 300072, China
| | - Chunni Gu
- Shanghai Nuoyi Fashion Design & Technology Co., Ltd., Shanghai, 200050, China
| | - Er Chen
- State Key Laboratory of Medical Neurobiology, Institute of Brain Science, Department of Ophthalmology, Zhongshan Hospital, Fudan University, Shanghai, 200032, China
| | - Xunliang Cheng
- State Key Laboratory of Molecular Engineering of Polymers, Department of Macromolecular Science, and Laboratory of Advanced Materials, Fudan University, Shanghai, 200438, China
| | - Yifan Xu
- State Key Laboratory of Molecular Engineering of Polymers, Department of Macromolecular Science, and Laboratory of Advanced Materials, Fudan University, Shanghai, 200438, China
| | - Yajie Hu
- State Key Laboratory of Molecular Engineering of Polymers, Department of Macromolecular Science, and Laboratory of Advanced Materials, Fudan University, Shanghai, 200438, China
| | - Jiayi Zhang
- State Key Laboratory of Medical Neurobiology, Institute of Brain Science, Department of Ophthalmology, Zhongshan Hospital, Fudan University, Shanghai, 200032, China
| | - Lei Zhou
- State Key Laboratory of Surface Physics and Key Laboratory of Micro and Nano Photonic Structures (Ministry of Education), Fudan University, Shanghai, 200433, China
| | - Hon Hang Fong
- Department of Electronic Engineering, Shanghai Jiao Tong University, Shanghai, 200240, China
- Department of Chemistry, Tianjin University, Tianjin, 300072, China
| | - Pibo Ma
- Engineering Research Center for Knitting Technology, Ministry of Education, Jiangnan University, Wuxi, 214122, China
| | - Gaoming Jiang
- Engineering Research Center for Knitting Technology, Ministry of Education, Jiangnan University, Wuxi, 214122, China
| | - Xuemei Sun
- State Key Laboratory of Molecular Engineering of Polymers, Department of Macromolecular Science, and Laboratory of Advanced Materials, Fudan University, Shanghai, 200438, China
| | - Bo Zhang
- State Key Laboratory of Molecular Engineering of Polymers, Department of Macromolecular Science, and Laboratory of Advanced Materials, Fudan University, Shanghai, 200438, China
| | - Huisheng Peng
- State Key Laboratory of Molecular Engineering of Polymers, Department of Macromolecular Science, and Laboratory of Advanced Materials, Fudan University, Shanghai, 200438, China
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28
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Toth PG, Marsalek P, Pokora O. Ergodicity and parameter estimates in auditory neural circuits. BIOLOGICAL CYBERNETICS 2018; 112:41-55. [PMID: 29082437 PMCID: PMC5908860 DOI: 10.1007/s00422-017-0739-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/05/2017] [Accepted: 10/12/2017] [Indexed: 06/07/2023]
Abstract
This paper discusses ergodic properties and circular statistical characteristics in neuronal spike trains. Ergodicity means that the average taken over a long time period and over smaller population should equal the average in less time and larger population. The objectives are to show simple examples of design and validation of a neuronal model, where the ergodicity assumption helps find correspondence between variables and parameters. The methods used are analytical and numerical computations, numerical models of phenomenological spiking neurons and neuronal circuits. Results obtained using these methods are the following. They are: a formula to calculate vector strength of neural spike timing dependent on the spike train parameters, description of parameters of spike train variability and model of output spiking density based on assumption of the computation realized by sound localization neural circuit. Theoretical results are illustrated by references to experimental data. Examples of neurons where spike trains have and do not have the ergodic property are then discussed.
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Affiliation(s)
- Peter G. Toth
- Institute of Pathological Physiology, First Medical Faculty, Charles University, U Nemocnice 5, 12853 Prague 2, Czech Republic
| | - Petr Marsalek
- Max Planck Institute for the Physics of Complex Systems, Noethnitzer Strasse 38, 01187 Dresden, Germany
- Czech Technical University in Prague, Zikova 1903/4, 16636 Prague 6, Czech Republic
| | - Ondrej Pokora
- Department of Mathematics and Statistics, Faculty of Science, Masaryk University, Kotlarska 2, 61137 Brno, Czech Republic
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29
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Yger P, Spampinato GLB, Esposito E, Lefebvre B, Deny S, Gardella C, Stimberg M, Jetter F, Zeck G, Picaud S, Duebel J, Marre O. A spike sorting toolbox for up to thousands of electrodes validated with ground truth recordings in vitro and in vivo. eLife 2018; 7:e34518. [PMID: 29557782 PMCID: PMC5897014 DOI: 10.7554/elife.34518] [Citation(s) in RCA: 155] [Impact Index Per Article: 25.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2017] [Accepted: 03/19/2018] [Indexed: 01/03/2023] Open
Abstract
In recent years, multielectrode arrays and large silicon probes have been developed to record simultaneously between hundreds and thousands of electrodes packed with a high density. However, they require novel methods to extract the spiking activity of large ensembles of neurons. Here, we developed a new toolbox to sort spikes from these large-scale extracellular data. To validate our method, we performed simultaneous extracellular and loose patch recordings in rodents to obtain 'ground truth' data, where the solution to this sorting problem is known for one cell. The performance of our algorithm was always close to the best expected performance, over a broad range of signal-to-noise ratios, in vitro and in vivo. The algorithm is entirely parallelized and has been successfully tested on recordings with up to 4225 electrodes. Our toolbox thus offers a generic solution to sort accurately spikes for up to thousands of electrodes.
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Affiliation(s)
- Pierre Yger
- Institut de la Vision, INSERM UMRS 968, UPMC UM 80ParisFrance
| | | | - Elric Esposito
- Institut de la Vision, INSERM UMRS 968, UPMC UM 80ParisFrance
| | | | - Stéphane Deny
- Institut de la Vision, INSERM UMRS 968, UPMC UM 80ParisFrance
| | - Christophe Gardella
- Institut de la Vision, INSERM UMRS 968, UPMC UM 80ParisFrance
- Laboratoire de Physique Statistique, CNRS, ENS, UPMC, 75005ParisFrance
| | - Marcel Stimberg
- Institut de la Vision, INSERM UMRS 968, UPMC UM 80ParisFrance
| | | | | | - Serge Picaud
- Institut de la Vision, INSERM UMRS 968, UPMC UM 80ParisFrance
| | - Jens Duebel
- Institut de la Vision, INSERM UMRS 968, UPMC UM 80ParisFrance
| | - Olivier Marre
- Institut de la Vision, INSERM UMRS 968, UPMC UM 80ParisFrance
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30
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Seabrook TA, Burbridge TJ, Crair MC, Huberman AD. Architecture, Function, and Assembly of the Mouse Visual System. Annu Rev Neurosci 2018; 40:499-538. [PMID: 28772103 DOI: 10.1146/annurev-neuro-071714-033842] [Citation(s) in RCA: 165] [Impact Index Per Article: 27.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Vision is the sense humans rely on most to navigate the world, make decisions, and perform complex tasks. Understanding how humans see thus represents one of the most fundamental and important goals of neuroscience. The use of the mouse as a model for parsing how vision works at a fundamental level started approximately a decade ago, ushered in by the mouse's convenient size, relatively low cost, and, above all, amenability to genetic perturbations. In the course of that effort, a large cadre of new and powerful tools for in vivo labeling, monitoring, and manipulation of neurons were applied to this species. As a consequence, a significant body of work now exists on the architecture, function, and development of mouse central visual pathways. Excitingly, much of that work includes causal testing of the role of specific cell types and circuits in visual perception and behavior-something rare to find in studies of the visual system of other species. Indeed, one could argue that more information is now available about the mouse visual system than any other sensory system, in any species, including humans. As such, the mouse visual system has become a platform for multilevel analysis of the mammalian central nervous system generally. Here we review the mouse visual system structure, function, and development literature and comment on the similarities and differences between the visual system of this and other model species. We also make it a point to highlight the aspects of mouse visual circuitry that remain opaque and that are in need of additional experimentation to enrich our understanding of how vision works on a broad scale.
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Affiliation(s)
- Tania A Seabrook
- Department of Neurobiology, Stanford University School of Medicine, Stanford, California 94305
| | - Timothy J Burbridge
- Department of Neuroscience, Yale University School of Medicine, New Haven, Connecticut 06520;
| | - Michael C Crair
- Department of Neuroscience, Yale University School of Medicine, New Haven, Connecticut 06520;
| | - Andrew D Huberman
- Department of Neurobiology, Stanford University School of Medicine, Stanford, California 94305.,Department of Ophthalmology, Stanford University School of Medicine, Palo Alto, California 94303; .,Bio-X, Stanford University, Stanford, California 94305
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31
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Denman DJ, Luviano JA, Ollerenshaw DR, Cross S, Williams D, Buice MA, Olsen SR, Reid RC. Mouse color and wavelength-specific luminance contrast sensitivity are non-uniform across visual space. eLife 2018; 7:e31209. [PMID: 29319502 PMCID: PMC5762155 DOI: 10.7554/elife.31209] [Citation(s) in RCA: 50] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2017] [Accepted: 12/13/2017] [Indexed: 01/10/2023] Open
Abstract
Mammalian visual behaviors, as well as responses in the neural systems underlying these behaviors, are driven by luminance and color contrast. With constantly improving tools for measuring activity in cell-type-specific populations in the mouse during visual behavior, it is important to define the extent of luminance and color information that is behaviorally accessible to the mouse. A non-uniform distribution of cone opsins in the mouse retina potentially complicates both luminance and color sensitivity; opposing gradients of short (UV-shifted) and middle (blue/green) cone opsins suggest that color discrimination and wavelength-specific luminance contrast sensitivity may differ with retinotopic location. Here we ask how well mice can discriminate color and wavelength-specific luminance changes across visuotopic space. We found that mice were able to discriminate color and were able to do so more broadly across visuotopic space than expected from the cone-opsin distribution. We also found wavelength-band-specific differences in luminance sensitivity.
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Affiliation(s)
| | | | | | - Sissy Cross
- Allen Institute for Brain ScienceSeattleUnited States
| | | | | | - Shawn R Olsen
- Allen Institute for Brain ScienceSeattleUnited States
| | - R Clay Reid
- Allen Institute for Brain ScienceSeattleUnited States
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32
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Stabio ME, Sabbah S, Quattrochi LE, Ilardi MC, Fogerson PM, Leyrer ML, Kim MT, Kim I, Schiel M, Renna JM, Briggman KL, Berson DM. The M5 Cell: A Color-Opponent Intrinsically Photosensitive Retinal Ganglion Cell. Neuron 2018; 97:150-163.e4. [PMID: 29249284 PMCID: PMC5757626 DOI: 10.1016/j.neuron.2017.11.030] [Citation(s) in RCA: 56] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2017] [Revised: 10/09/2017] [Accepted: 11/17/2017] [Indexed: 12/19/2022]
Abstract
Intrinsically photosensitive retinal ganglion cells (ipRGCs) combine direct photosensitivity through melanopsin with synaptically mediated drive from classical photoreceptors through bipolar-cell input. Here, we sought to provide a fuller description of the least understood ipRGC type, the M5 cell, and discovered a distinctive functional characteristic-chromatic opponency (ultraviolet excitatory, green inhibitory). Serial electron microscopic reconstructions revealed that M5 cells receive selective UV-opsin drive from Type 9 cone bipolar cells but also mixed cone signals from bipolar Types 6, 7, and 8. Recordings suggest that both excitation and inhibition are driven by the ON channel and that chromatic opponency results from M-cone-driven surround inhibition mediated by wide-field spiking GABAergic amacrine cells. We show that M5 cells send axons to the dLGN and are thus positioned to provide chromatic signals to visual cortex. These findings underscore that melanopsin's influence extends beyond unconscious reflex functions to encompass cortical vision, perhaps including the perception of color.
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Affiliation(s)
- Maureen E Stabio
- Department of Cell & Developmental Biology, University of Colorado School of Medicine, Aurora, CO 80045, USA.
| | - Shai Sabbah
- Department of Neuroscience, Brown University, Providence, RI 02912, USA
| | | | - Marissa C Ilardi
- Department of Neuroscience, Brown University, Providence, RI 02912, USA
| | | | - Megan L Leyrer
- Department of Neuroscience, Brown University, Providence, RI 02912, USA
| | - Min Tae Kim
- Department of Neuroscience, Brown University, Providence, RI 02912, USA
| | - Inkyu Kim
- Department of Neuroscience, Brown University, Providence, RI 02912, USA
| | - Matthew Schiel
- Circuit Dynamics and Connectivity Unit, National Institute of Neurological Disorders and Stroke, Bethesda, MD 20892, USA
| | - Jordan M Renna
- Department of Biology, University of Akron, Akron, OH 44325, USA
| | - Kevin L Briggman
- Circuit Dynamics and Connectivity Unit, National Institute of Neurological Disorders and Stroke, Bethesda, MD 20892, USA
| | - David M Berson
- Department of Neuroscience, Brown University, Providence, RI 02912, USA
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33
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Leinonen H, Tanila H. Vision in laboratory rodents-Tools to measure it and implications for behavioral research. Behav Brain Res 2017; 352:172-182. [PMID: 28760697 DOI: 10.1016/j.bbr.2017.07.040] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2017] [Revised: 07/17/2017] [Accepted: 07/27/2017] [Indexed: 02/09/2023]
Abstract
Mice and rats are nocturnal mammals and their vision is specialized for detection of motion and contrast in dim light conditions. These species possess a large proportion of UV-sensitive cones in their retinas and the majority of their optic nerve axons target superior colliculus rather than visual cortex. Therefore, it was a widely held belief that laboratory rodents hardly utilize vision during day-time behavior. This dogma is being questioned as accumulating evidence suggests that laboratory rodents are able to perform complex visual functions, such as perceiving subjective contours, and that declined vision may affect their performance in many behavioral tasks. For instance, genetic engineering may have unexpected consequences on vision as mouse models of Alzheimer's and Huntington's diseases have declined visual function. Rodent vision can be tested in numerous ways using operant training or reflex-based behavioral tasks, or alternatively using electrophysiological recordings. In this article, we will first provide a summary of visual system and explain its characteristics unique to rodents. Then, we present well-established techniques to test rodent vision, with an emphasis on pattern vision: visual water test, optomotor reflex test, pattern electroretinography and pattern visual evoked potentials. Finally, we highlight the importance of visual phenotyping in rodents. As the number of genetically engineered rodent models and volume of behavioral testing increase simultaneously, the possibility of visual dysfunctions needs to be addressed. Neglect in this matter potentially leads to crude biases in the field of neuroscience and beyond.
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Affiliation(s)
- Henri Leinonen
- A.I. Virtanen Institute for Molecular Sciences, University of Eastern Finland, P.O. Box 1627, Neulaniementie 2, 70211 Kuopio, Finland.
| | - Heikki Tanila
- A.I. Virtanen Institute for Molecular Sciences, University of Eastern Finland, P.O. Box 1627, Neulaniementie 2, 70211 Kuopio, Finland
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34
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Gratiy SL, Halnes G, Denman D, Hawrylycz MJ, Koch C, Einevoll GT, Anastassiou CA. From Maxwell's equations to the theory of current-source density analysis. Eur J Neurosci 2017; 45:1013-1023. [PMID: 28177156 PMCID: PMC5413824 DOI: 10.1111/ejn.13534] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2016] [Revised: 01/17/2017] [Accepted: 01/30/2017] [Indexed: 12/31/2022]
Abstract
Despite the widespread use of current‐source density (CSD) analysis of extracellular potential recordings in the brain, the physical mechanisms responsible for the generation of the signal are still debated. While the extracellular potential is thought to be exclusively generated by the transmembrane currents, recent studies suggest that extracellular diffusive, advective and displacement currents—traditionally neglected—may also contribute considerably toward extracellular potential recordings. Here, we first justify the application of the electro‐quasistatic approximation of Maxwell's equations to describe the electromagnetic field of physiological origin. Subsequently, we perform spatial averaging of currents in neural tissue to arrive at the notion of the CSD and derive an equation relating it to the extracellular potential. We show that, in general, the extracellular potential is determined by the CSD of membrane currents as well as the gradients of the putative extracellular diffusion current. The diffusion current can contribute significantly to the extracellular potential at frequencies less than a few Hertz; in which case it must be subtracted to obtain correct CSD estimates. We also show that the advective and displacement currents in the extracellular space are negligible for physiological frequencies while, within cellular membrane, displacement current contributes toward the CSD as a capacitive current. Taken together, these findings elucidate the relationship between electric currents and the extracellular potential in brain tissue and form the necessary foundation for the analysis of extracellular recordings.
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Affiliation(s)
| | - Geir Halnes
- Faculty of Science and Technology, Norwegian University of Life Sciences, Aas, Norway
| | - Daniel Denman
- Allen Institute for Brain Science, Seattle, WA, 98109, USA
| | | | - Christof Koch
- Allen Institute for Brain Science, Seattle, WA, 98109, USA
| | - Gaute T Einevoll
- Faculty of Science and Technology, Norwegian University of Life Sciences, Aas, Norway.,Department of Physics, University of Oslo, Oslo, Norway
| | - Costas A Anastassiou
- Allen Institute for Brain Science, Seattle, WA, 98109, USA.,Department of Neurology, University of British Columbia, Vancouver, BC, Canada
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35
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Abstract
The thalamocortical (TC) relay neuron of the dorsoLateral Geniculate Nucleus (dLGN) has borne its imprecise label for many decades in spite of strong evidence that its role in visual processing transcends the implied simplicity of the term "relay". The retinogeniculate synapse is the site of communication between a retinal ganglion cell and a TC neuron of the dLGN. Activation of retinal fibers in the optic tract causes reliable, rapid, and robust postsynaptic potentials that drive postsynaptics spikes in a TC neuron. Cortical and subcortical modulatory systems have been known for decades to regulate retinogeniculate transmission. The dynamic properties that the retinogeniculate synapse itself exhibits during and after developmental refinement further enrich the role of the dLGN in the transmission of the retinal signal. Here we consider the structural and functional substrates for retinogeniculate synaptic transmission and plasticity, and reflect on how the complexity of the retinogeniculate synapse imparts a novel dynamic and influential capacity to subcortical processing of visual information.
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Affiliation(s)
- Elizabeth Y Litvina
- Department of Neurology,F.M. Kirby Neurobiology Center,Children's Hospital, Boston,Boston,Massachusetts 02115
| | - Chinfei Chen
- Department of Neurology,F.M. Kirby Neurobiology Center,Children's Hospital, Boston,Boston,Massachusetts 02115
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